RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11534
         (81 letters)



>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
           {Escherichia coli [TaxId: 562]}
          Length = 338

 Score = 50.6 bits (120), Expect = 9e-10
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1   MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSL 60
            +     +  L K +  ++   +  RS   G+Q+F   W GD  A +  +  SL   LS+
Sbjct: 195 YIYNELVWNVL-KDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSI 253

Query: 61  AVS 63
            +S
Sbjct: 254 GLS 256


>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 23.4 bits (49), Expect = 3.7
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 11 LLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLK----ISLPMCLSLAVSEKK 66
          L K  +  +R F+L  +  AG       +  +             I L  C ++      
Sbjct: 8  LRKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADS 67

Query: 67 SANFVV 72
              +V
Sbjct: 68 KNKHLV 73


>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 291

 Score = 23.6 bits (50), Expect = 4.0
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 6/31 (19%)

Query: 16  NYQ------QRPFILTRSGFAGSQRFGAIWT 40
            Y        RP ++ R   +  +RF A  T
Sbjct: 261 TYIGQDGEHHRPVVIHRGVVSTMERFVAFLT 291


>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase
          (hypothetical protein TM1585) {Thermotoga maritima
          [TaxId: 2336]}
          Length = 414

 Score = 23.4 bits (50), Expect = 4.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 70 FVVGIGAAAGSM 81
           +V +G AA  M
Sbjct: 38 ILVAVGKAAWRM 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 270,923
Number of extensions: 9343
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 4
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)