BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11539
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 130/324 (40%), Gaps = 58/324 (17%)
Query: 193 IFLSFPKWKAGIPFTLASFNMNDP-----SESPILLPYPNWSYFDDSNCNSLISVFRMSV 247
+FL+ P+ +P+TLA + + SP+L + L S+++ +
Sbjct: 40 LFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSG-----HKTGKELTSIYQPVI 94
Query: 248 DKCDRLWIMDTGVTNILSSIQQLCP---PKIMVFDLKTNTL--IRKYILPTAQVFEGSLF 302
D C RLW++D G S + P P I+ +DLK + +Y PT V + + F
Sbjct: 95 DDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYF 154
Query: 303 SNIVTEVVE---DCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPE-PTQSTYILD 358
+V DC F Y+ + R L +YD K S+ +THP E PT+ Y
Sbjct: 155 GGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGK 214
Query: 359 NLKFRWVDGIFGMAISPELSGYKYKRXXXXXXXXXXXXXNGTNVDKTIRDDQRYMYFHSM 418
+F+ GIFG+ + S + R Y+ +
Sbjct: 215 EYEFK--AGIFGITLGDRDS-----------------------------EGNRPAYYLAG 243
Query: 419 SSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAIN-SNGVMFYNLVTK 477
S+ + Y V+T +L+ +N LG+R K A A A + V+F+
Sbjct: 244 SAIKVYSVNTKELKQKGGKLNP-------ELLGNRGKYNDAIALAYDPKTKVIFFAEANT 296
Query: 478 HSVGCWNTKTKVYLPQTQDIVQTS 501
V CWNT+ + D+V TS
Sbjct: 297 KQVSCWNTQKXPLRXKNTDVVYTS 320
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 130/324 (40%), Gaps = 58/324 (17%)
Query: 193 IFLSFPKWKAGIPFTLASFNMNDP-----SESPILLPYPNWSYFDDSNCNSLISVFRMSV 247
+FL+ P+ +P+TLA + + SP+L + L S+++ +
Sbjct: 40 LFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSG-----HKTGKELTSIYQPVI 94
Query: 248 DKCDRLWIMDTGVTNILSSIQQLCP---PKIMVFDLKTNTL--IRKYILPTAQVFEGSLF 302
D C RLW++D G S + P P I+ +DLK + +Y PT V + + F
Sbjct: 95 DDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYF 154
Query: 303 SNIVTEVVE---DCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPE-PTQSTYILD 358
+V DC F Y+ + R L +YD K S+ +THP E PT+ Y
Sbjct: 155 GGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGK 214
Query: 359 NLKFRWVDGIFGMAISPELSGYKYKRXXXXXXXXXXXXXNGTNVDKTIRDDQRYMYFHSM 418
+F+ GIFG+ + S + R Y+ +
Sbjct: 215 EYEFK--AGIFGITLGDRDS-----------------------------EGNRPAYYLAG 243
Query: 419 SSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAIN-SNGVMFYNLVTK 477
S+ + Y V+T +L+ +N LG+R K A A A + V+F+
Sbjct: 244 SAIKVYSVNTKELKQKGGKLNP-------ELLGNRGKYNDAIALAYDPKTKVIFFAEANT 296
Query: 478 HSVGCWNTKTKVYLPQTQDIVQTS 501
V CWNT+ + D+V TS
Sbjct: 297 KQVSCWNTQKMPLRMKNTDVVYTS 320
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 284 TLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTH 343
+++RK +L + G + V + E D V+ Y ND F YGL+ H
Sbjct: 153 SVVRKRLLGIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLL----------DDGH 202
Query: 344 PYMYPEPTQSTYILDNLKFRW 364
YP P + L F+W
Sbjct: 203 LIAYPIPGRENAESPRLNFQW 223
>pdb|2OSU|A Chain A, Probable Glutaminase From Bacillus Subtilis Complexed With
6-diazo-5-oxo-l-norleucine
pdb|2OSU|B Chain B, Probable Glutaminase From Bacillus Subtilis Complexed With
6-diazo-5-oxo-l-norleucine
pdb|3BRM|A Chain A, Crystal Structure Of The Covalent Complex Between The
Bacillus Subtilis Glutaminase Ybgj And
5-Oxo-L-Norleucine Formed By Reaction Of The Protein
With 6-Diazo-5-Oxo-L- Norleucine
pdb|3BRM|B Chain B, Crystal Structure Of The Covalent Complex Between The
Bacillus Subtilis Glutaminase Ybgj And
5-Oxo-L-Norleucine Formed By Reaction Of The Protein
With 6-Diazo-5-Oxo-L- Norleucine
Length = 330
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 78 VTTYRPMAPSGPSQPMRPAMGQKNNNQ-------PPNTKSNAGP-----ARPSTDQTKSF 125
V YRP A +G S PA+G+ N++Q P T +AG S + SF
Sbjct: 25 VEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTXIHAGDWNVSFTXQSISKVISF 84
Query: 126 YPSVPSNGHPSVPS--NAYPSSSHFQVVFRWKI 156
+ S G P V + P+ F + R +I
Sbjct: 85 IAACXSRGIPYVLDRVDVEPTGDAFNSIIRLEI 117
>pdb|3AGF|A Chain A, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
pdb|3AGF|B Chain B, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
Length = 327
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 78 VTTYRPMAPSGPSQPMRPAMGQKNNNQ-------PPNTKSNAGP-----ARPSTDQTKSF 125
V YRP A +G S PA+G+ N++Q P T +AG S + SF
Sbjct: 22 VEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISF 81
Query: 126 YPSVPSNGHPSVPS--NAYPSSSHFQVVFRWKI 156
+ S G P V + P+ F + R +I
Sbjct: 82 IAACMSRGIPYVLDRVDVEPTGDAFNSIIRLEI 114
>pdb|1MKI|A Chain A, Crystal Structure Of Bacillus Subtilis Probable
Glutaminase, Apc1040
pdb|1MKI|B Chain B, Crystal Structure Of Bacillus Subtilis Probable
Glutaminase, Apc1040
Length = 330
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 78 VTTYRPMAPSGPSQPMRPAMGQKNNNQ-------PPNTKSNAGPARPS-----TDQTKSF 125
V YRP A +G S PA+G+ N++Q P T +AG S + SF
Sbjct: 25 VEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTXIHAGDWNVSFTXQXISKVISF 84
Query: 126 YPSVPSNGHPSVPS--NAYPSSSHFQVVFRWKI 156
+ S G P V + P+ F + R +I
Sbjct: 85 IAACXSRGIPYVLDRVDVEPTGDAFNSIIRLEI 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,471,630
Number of Sequences: 62578
Number of extensions: 637317
Number of successful extensions: 1170
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 35
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)