Query psy11539
Match_columns 530
No_of_seqs 192 out of 641
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 21:05:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03022 MRJP: Major royal jel 100.0 1.1E-64 2.5E-69 513.4 26.8 253 240-528 1-256 (287)
2 PF08450 SGL: SMP-30/Gluconola 99.5 2.2E-11 4.7E-16 119.1 25.0 231 182-523 1-244 (246)
3 PLN02919 haloacid dehalogenase 99.3 3.1E-09 6.8E-14 125.4 29.7 278 181-529 568-882 (1057)
4 PF08450 SGL: SMP-30/Gluconola 99.1 6.9E-09 1.5E-13 101.5 20.9 194 243-528 3-206 (246)
5 COG3386 Gluconolactonase [Carb 99.0 3.3E-08 7.2E-13 102.3 21.0 192 242-524 69-275 (307)
6 PLN02919 haloacid dehalogenase 99.0 4.2E-08 9.1E-13 116.0 23.0 231 237-529 565-827 (1057)
7 COG4257 Vgb Streptogramin lyas 98.4 1.7E-05 3.6E-10 81.3 19.0 228 240-522 62-292 (353)
8 COG3386 Gluconolactonase [Carb 98.1 0.00031 6.6E-09 73.2 20.2 187 248-526 34-233 (307)
9 PF10282 Lactonase: Lactonase, 98.1 0.00043 9.3E-09 72.0 20.0 226 179-485 85-321 (345)
10 PRK11028 6-phosphogluconolacto 98.0 0.0022 4.9E-08 65.3 24.3 232 182-513 81-327 (330)
11 PRK11028 6-phosphogluconolacto 97.9 0.0011 2.3E-08 67.6 20.3 203 241-523 81-292 (330)
12 TIGR03866 PQQ_ABC_repeats PQQ- 97.9 0.0062 1.3E-07 58.9 24.2 73 243-338 34-107 (300)
13 TIGR02604 Piru_Ver_Nterm putat 97.8 0.011 2.4E-07 62.3 25.7 61 467-528 281-343 (367)
14 PF06977 SdiA-regulated: SdiA- 97.8 0.0029 6.4E-08 64.1 20.5 211 241-528 23-244 (248)
15 PF10282 Lactonase: Lactonase, 97.8 0.0033 7.2E-08 65.4 20.3 257 179-522 35-309 (345)
16 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.017 3.6E-07 61.5 25.3 128 190-340 12-142 (352)
17 COG4257 Vgb Streptogramin lyas 97.5 0.0025 5.4E-08 65.8 14.8 230 178-490 59-309 (353)
18 COG3391 Uncharacterized conser 97.3 0.051 1.1E-06 57.8 21.8 231 182-523 32-270 (381)
19 TIGR02604 Piru_Ver_Nterm putat 97.2 0.015 3.3E-07 61.3 17.3 82 238-332 12-96 (367)
20 TIGR03866 PQQ_ABC_repeats PQQ- 97.2 0.14 3E-06 49.6 22.4 159 244-486 77-237 (300)
21 KOG1520|consensus 97.2 0.018 4E-07 61.5 16.9 64 241-325 116-181 (376)
22 COG2706 3-carboxymuconate cycl 97.0 0.041 8.8E-07 58.2 17.8 89 242-349 147-238 (346)
23 TIGR02658 TTQ_MADH_Hv methylam 96.9 0.13 2.8E-06 54.9 20.4 114 251-430 13-137 (352)
24 COG3391 Uncharacterized conser 96.6 0.14 3E-06 54.6 18.5 204 181-486 74-283 (381)
25 PF02239 Cytochrom_D1: Cytochr 96.5 0.097 2.1E-06 55.8 16.5 171 273-523 16-189 (369)
26 cd00200 WD40 WD40 domain, foun 96.3 0.89 1.9E-05 41.9 20.9 189 241-528 95-284 (289)
27 KOG4659|consensus 96.2 0.08 1.7E-06 63.6 14.7 109 411-522 419-550 (1899)
28 KOG1214|consensus 95.9 0.05 1.1E-06 62.9 11.0 61 457-524 1111-1174(1289)
29 COG3204 Uncharacterized protei 95.9 0.84 1.8E-05 47.9 19.0 195 271-528 106-306 (316)
30 COG2706 3-carboxymuconate cycl 95.9 1.2 2.5E-05 47.6 20.1 151 314-523 155-308 (346)
31 PF06433 Me-amine-dh_H: Methyl 95.9 0.033 7.1E-07 59.1 8.7 80 249-342 248-328 (342)
32 PF06977 SdiA-regulated: SdiA- 95.8 0.73 1.6E-05 46.9 17.6 116 183-333 24-148 (248)
33 PRK02888 nitrous-oxide reducta 95.7 0.4 8.7E-06 54.7 16.9 74 406-486 328-404 (635)
34 PF03022 MRJP: Major royal jel 95.6 0.93 2E-05 46.8 17.8 83 184-287 4-102 (287)
35 PF03088 Str_synth: Strictosid 95.5 0.037 8E-07 48.0 6.3 51 303-377 1-68 (89)
36 PF02239 Cytochrom_D1: Cytochr 95.1 1.3 2.8E-05 47.4 17.5 159 245-486 42-202 (369)
37 TIGR03606 non_repeat_PQQ dehyd 94.9 1.4 3.1E-05 48.7 17.5 86 237-334 27-124 (454)
38 PF03088 Str_synth: Strictosid 94.7 0.11 2.3E-06 45.2 6.9 56 461-524 2-75 (89)
39 PF13360 PQQ_2: PQQ-like domai 94.2 5.3 0.00012 38.0 20.8 70 246-341 32-102 (238)
40 KOG4499|consensus 94.1 0.98 2.1E-05 46.3 13.0 70 411-490 170-245 (310)
41 KOG4659|consensus 94.1 3.6 7.8E-05 50.4 19.3 72 457-528 407-497 (1899)
42 PF01436 NHL: NHL repeat; Int 93.9 0.082 1.8E-06 36.0 3.5 26 458-483 3-28 (28)
43 PF13360 PQQ_2: PQQ-like domai 93.8 6.4 0.00014 37.5 19.0 124 186-340 72-198 (238)
44 KOG1539|consensus 93.7 2 4.4E-05 50.1 16.1 192 239-492 448-653 (910)
45 TIGR03606 non_repeat_PQQ dehyd 93.2 5.3 0.00012 44.3 17.9 62 459-523 148-247 (454)
46 PF01436 NHL: NHL repeat; Int 93.2 0.077 1.7E-06 36.1 2.4 25 505-529 1-25 (28)
47 PF07995 GSDH: Glucose / Sorbo 92.5 6.3 0.00014 41.3 16.6 83 239-336 1-92 (331)
48 PF05096 Glu_cyclase_2: Glutam 92.4 2.3 5E-05 44.0 12.8 125 178-342 87-211 (264)
49 PF05694 SBP56: 56kDa selenium 92.2 2.3 5.1E-05 46.8 13.2 127 271-435 220-348 (461)
50 KOG1520|consensus 92.2 0.86 1.9E-05 49.1 9.8 108 408-528 73-183 (376)
51 KOG4499|consensus 91.8 0.42 9.2E-06 48.9 6.6 66 458-525 159-231 (310)
52 COG4247 Phy 3-phytase (myo-ino 91.8 9.3 0.0002 39.9 16.1 51 314-364 65-115 (364)
53 PF13449 Phytase-like: Esteras 91.7 1.7 3.7E-05 45.3 11.2 117 238-377 18-158 (326)
54 PF02333 Phytase: Phytase; In 91.4 25 0.00053 38.4 20.4 66 457-525 208-278 (381)
55 PF07995 GSDH: Glucose / Sorbo 90.9 8.6 0.00019 40.3 15.6 61 411-482 271-331 (331)
56 PF00058 Ldl_recept_b: Low-den 90.9 0.59 1.3E-05 34.7 5.0 41 468-515 1-42 (42)
57 KOG1214|consensus 90.7 2.7 5.8E-05 49.4 12.2 174 271-523 1034-1214(1289)
58 TIGR03032 conserved hypothetic 90.4 1.2 2.5E-05 47.3 8.5 86 237-338 200-294 (335)
59 cd00200 WD40 WD40 domain, foun 90.4 14 0.00031 33.8 20.5 56 274-340 74-129 (289)
60 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.3 35 0.00076 38.3 28.3 65 245-309 239-308 (527)
61 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.1 27 0.0006 39.2 19.5 63 273-342 79-147 (527)
62 cd00216 PQQ_DH Dehydrogenases 87.6 49 0.0011 36.5 19.3 68 274-342 257-328 (488)
63 PF05096 Glu_cyclase_2: Glutam 87.4 32 0.00069 35.7 16.2 46 240-295 45-90 (264)
64 PF06739 SBBP: Beta-propeller 85.2 0.95 2.1E-05 33.1 2.9 31 447-477 3-33 (38)
65 COG4946 Uncharacterized protei 84.9 12 0.00026 41.9 12.2 87 237-344 399-487 (668)
66 PF06433 Me-amine-dh_H: Methyl 84.4 6.4 0.00014 42.1 9.8 67 250-336 2-77 (342)
67 PF13449 Phytase-like: Esteras 82.9 6.6 0.00014 41.0 9.1 70 241-321 86-164 (326)
68 smart00135 LY Low-density lipo 81.6 2.9 6.3E-05 29.4 4.2 30 457-486 9-39 (43)
69 cd00216 PQQ_DH Dehydrogenases 80.3 61 0.0013 35.8 15.9 123 187-343 58-193 (488)
70 TIGR02276 beta_rpt_yvtn 40-res 77.9 7.1 0.00015 27.6 5.3 32 250-293 3-34 (42)
71 KOG0286|consensus 77.8 1E+02 0.0022 32.9 16.5 170 270-522 163-332 (343)
72 smart00135 LY Low-density lipo 76.8 6.1 0.00013 27.7 4.7 33 300-336 9-41 (43)
73 KOG0265|consensus 75.2 1.2E+02 0.0025 32.5 15.1 55 273-338 112-167 (338)
74 PRK04792 tolB translocation pr 75.2 1.3E+02 0.0029 32.8 18.6 62 271-342 284-346 (448)
75 PRK04043 tolB translocation pr 73.8 57 0.0012 35.5 13.2 29 314-342 288-317 (419)
76 PRK04043 tolB translocation pr 73.4 64 0.0014 35.1 13.5 61 273-343 213-274 (419)
77 COG3204 Uncharacterized protei 73.3 1.3E+02 0.0029 32.0 17.3 28 457-485 284-311 (316)
78 PF05787 DUF839: Bacterial pro 72.7 8.6 0.00019 43.3 6.8 65 457-522 350-452 (524)
79 PRK03629 tolB translocation pr 71.3 1.6E+02 0.0034 31.9 16.1 61 272-342 266-327 (429)
80 smart00284 OLF Olfactomedin-li 70.1 1.4E+02 0.003 30.9 16.9 159 159-341 51-215 (255)
81 TIGR02276 beta_rpt_yvtn 40-res 70.1 10 0.00022 26.7 4.5 26 314-339 2-27 (42)
82 PRK11138 outer membrane biogen 69.8 1.5E+02 0.0033 31.3 28.0 119 183-342 113-232 (394)
83 KOG0291|consensus 69.4 1.3E+02 0.0028 35.7 15.0 61 273-342 414-474 (893)
84 PF07494 Reg_prop: Two compone 69.4 4.6 0.0001 26.6 2.3 16 241-256 6-21 (24)
85 PF06739 SBBP: Beta-propeller 68.8 5.1 0.00011 29.3 2.7 25 503-527 10-34 (38)
86 KOG0291|consensus 68.2 2.6E+02 0.0057 33.3 20.5 190 239-526 350-541 (893)
87 KOG2055|consensus 67.6 1.7E+02 0.0036 33.0 14.8 64 273-346 237-300 (514)
88 PRK04792 tolB translocation pr 66.4 2E+02 0.0044 31.4 20.7 61 273-343 242-303 (448)
89 PF05567 Neisseria_PilC: Neiss 66.3 10 0.00022 40.1 5.4 50 271-324 179-230 (335)
90 PRK11138 outer membrane biogen 66.0 32 0.00069 36.4 9.1 115 187-343 66-188 (394)
91 COG3823 Glutamine cyclotransfe 65.9 1.7E+02 0.0036 30.2 15.3 41 242-293 48-88 (262)
92 COG5276 Uncharacterized conser 65.6 46 0.00099 35.6 9.7 56 271-340 59-120 (370)
93 PF08309 LVIVD: LVIVD repeat; 64.5 12 0.00026 28.2 3.9 27 303-336 5-31 (42)
94 PF14583 Pectate_lyase22: Olig 64.3 55 0.0012 35.8 10.5 103 277-436 14-117 (386)
95 TIGR03300 assembly_YfgL outer 63.9 31 0.00067 35.9 8.4 55 274-341 116-171 (377)
96 KOG1446|consensus 62.8 2.2E+02 0.0047 30.4 17.6 181 299-526 14-208 (311)
97 TIGR03118 PEPCTERM_chp_1 conse 62.5 1.2E+02 0.0026 32.6 12.2 110 242-376 191-308 (336)
98 PRK04922 tolB translocation pr 62.2 1E+02 0.0022 33.3 12.2 61 272-342 315-376 (433)
99 PRK05137 tolB translocation pr 61.5 1.1E+02 0.0024 32.9 12.3 58 271-338 312-370 (435)
100 TIGR03300 assembly_YfgL outer 61.3 87 0.0019 32.6 11.2 26 184-215 59-84 (377)
101 PRK02888 nitrous-oxide reducta 61.2 1.9E+02 0.0042 33.7 14.5 56 273-339 296-356 (635)
102 PF14269 Arylsulfotran_2: Aryl 60.8 2.2E+02 0.0047 29.8 18.8 67 271-342 94-182 (299)
103 PRK03629 tolB translocation pr 60.3 1.2E+02 0.0026 32.8 12.3 60 272-342 222-283 (429)
104 PF01731 Arylesterase: Arylest 59.3 16 0.00034 31.6 4.4 53 271-336 34-86 (86)
105 PF01731 Arylesterase: Arylest 59.3 19 0.00042 31.1 4.9 42 478-529 36-78 (86)
106 PRK05137 tolB translocation pr 58.9 2.6E+02 0.0056 30.1 14.8 61 272-342 269-330 (435)
107 KOG0294|consensus 58.1 2.1E+02 0.0045 30.9 13.0 64 457-528 128-191 (362)
108 PRK00178 tolB translocation pr 58.0 2E+02 0.0042 30.7 13.4 62 271-342 265-327 (430)
109 PRK04922 tolB translocation pr 57.4 2.8E+02 0.006 29.9 20.8 60 272-342 227-288 (433)
110 PF02191 OLF: Olfactomedin-lik 57.4 99 0.0022 31.6 10.5 124 184-336 126-249 (250)
111 PF07433 DUF1513: Protein of u 57.2 2.7E+02 0.0058 29.7 19.8 61 273-342 28-92 (305)
112 TIGR03074 PQQ_membr_DH membran 56.7 72 0.0016 37.8 10.5 83 273-363 641-740 (764)
113 PF07433 DUF1513: Protein of u 55.0 2.9E+02 0.0062 29.5 13.6 126 190-341 126-254 (305)
114 PRK00178 tolB translocation pr 54.9 2.9E+02 0.0063 29.4 19.6 62 272-343 222-284 (430)
115 PRK01742 tolB translocation pr 54.4 3.1E+02 0.0067 29.6 20.0 61 272-342 227-288 (429)
116 KOG0268|consensus 53.1 1.2E+02 0.0026 33.2 10.5 160 270-515 164-325 (433)
117 COG2133 Glucose/sorbosone dehy 53.1 3.5E+02 0.0076 29.9 14.6 55 468-525 332-386 (399)
118 PF05787 DUF839: Bacterial pro 52.5 1.9E+02 0.0041 32.8 12.6 48 236-283 346-401 (524)
119 PF14870 PSII_BNR: Photosynthe 52.2 1.2E+02 0.0026 32.0 10.3 84 238-343 185-269 (302)
120 PF02191 OLF: Olfactomedin-lik 51.6 2.8E+02 0.0062 28.3 19.4 66 458-527 171-241 (250)
121 TIGR02800 propeller_TolB tol-p 51.4 1.5E+02 0.0033 30.9 11.1 29 314-342 289-318 (417)
122 KOG0279|consensus 50.2 2E+02 0.0043 30.6 11.2 140 275-486 174-313 (315)
123 KOG0316|consensus 50.1 2.8E+02 0.0061 29.0 12.1 53 272-335 80-132 (307)
124 COG3823 Glutamine cyclotransfe 50.1 1.3E+02 0.0029 30.8 9.7 114 172-291 82-214 (262)
125 KOG0286|consensus 47.9 3.5E+02 0.0076 29.1 12.6 79 271-377 207-285 (343)
126 COG0823 TolB Periplasmic compo 46.6 75 0.0016 35.0 8.1 61 273-343 218-279 (425)
127 COG3490 Uncharacterized protei 46.3 95 0.0021 33.2 8.3 151 169-339 150-315 (366)
128 KOG0266|consensus 46.2 3.1E+02 0.0067 30.0 12.8 63 458-527 248-310 (456)
129 KOG1273|consensus 46.2 4.3E+02 0.0092 28.8 14.9 60 463-529 160-220 (405)
130 COG4222 Uncharacterized protei 46.1 68 0.0015 35.2 7.6 167 238-423 67-250 (391)
131 KOG1446|consensus 45.1 4.2E+02 0.009 28.4 17.9 182 274-486 81-262 (311)
132 KOG0279|consensus 44.9 4.1E+02 0.009 28.3 15.8 59 273-342 38-101 (315)
133 KOG4649|consensus 44.7 4.2E+02 0.009 28.3 13.6 29 398-427 135-163 (354)
134 KOG0643|consensus 44.4 1.8E+02 0.0038 30.9 9.8 83 244-337 46-131 (327)
135 KOG2048|consensus 44.1 6E+02 0.013 29.9 15.1 71 273-349 90-165 (691)
136 TIGR02800 propeller_TolB tol-p 43.7 4E+02 0.0087 27.8 21.0 61 273-343 214-275 (417)
137 KOG0289|consensus 43.6 3.1E+02 0.0068 30.8 11.9 55 458-518 391-445 (506)
138 PF01011 PQQ: PQQ enzyme repea 43.3 73 0.0016 22.7 5.1 22 273-294 10-31 (38)
139 KOG0271|consensus 42.8 5.2E+02 0.011 28.8 16.3 223 273-517 179-470 (480)
140 KOG0973|consensus 42.8 3E+02 0.0064 33.7 12.5 197 274-527 152-357 (942)
141 KOG0315|consensus 42.3 4.4E+02 0.0095 27.8 17.8 57 269-336 57-115 (311)
142 KOG3000|consensus 40.8 27 0.00059 36.8 3.4 30 30-61 104-133 (295)
143 PRK02889 tolB translocation pr 38.9 4.4E+02 0.0095 28.4 12.4 62 271-342 306-368 (427)
144 PRK02889 tolB translocation pr 38.4 5.4E+02 0.012 27.7 20.4 61 272-342 219-280 (427)
145 smart00284 OLF Olfactomedin-li 37.8 4.9E+02 0.011 27.0 15.8 72 250-342 34-112 (255)
146 KOG0282|consensus 37.6 1.7E+02 0.0038 32.9 9.0 52 275-337 282-333 (503)
147 KOG1539|consensus 37.1 2.4E+02 0.0052 33.9 10.4 61 272-342 223-283 (910)
148 KOG2110|consensus 36.7 6.1E+02 0.013 27.9 17.3 61 458-526 175-238 (391)
149 TIGR03032 conserved hypothetic 36.3 2.1E+02 0.0046 30.8 9.1 85 243-342 155-239 (335)
150 PF00930 DPPIV_N: Dipeptidyl p 36.0 2.9E+02 0.0062 28.9 10.3 174 239-429 114-315 (353)
151 KOG2055|consensus 35.8 5.9E+02 0.013 28.9 12.6 55 273-336 280-335 (514)
152 PLN00181 protein SPA1-RELATED; 35.3 7.9E+02 0.017 28.8 27.9 58 273-340 555-612 (793)
153 PTZ00420 coronin; Provisional 35.2 7.5E+02 0.016 28.5 18.1 56 273-340 148-203 (568)
154 KOG0289|consensus 35.0 5.7E+02 0.012 28.8 12.3 56 275-342 413-469 (506)
155 KOG0646|consensus 34.7 4.7E+02 0.01 29.5 11.7 125 173-334 120-247 (476)
156 KOG0278|consensus 34.4 5.9E+02 0.013 27.0 12.1 71 236-334 143-213 (334)
157 COG1520 FOG: WD40-like repeat 34.1 2E+02 0.0044 30.1 8.8 72 247-342 65-138 (370)
158 PRK01029 tolB translocation pr 33.9 5.9E+02 0.013 27.7 12.5 29 314-342 338-367 (428)
159 KOG1272|consensus 33.9 3.1E+02 0.0068 31.0 10.2 29 458-486 295-323 (545)
160 PF13570 PQQ_3: PQQ-like domai 33.8 1.2E+02 0.0027 21.5 5.0 26 303-335 15-40 (40)
161 PF14269 Arylsulfotran_2: Aryl 32.5 6E+02 0.013 26.5 16.5 172 148-341 106-296 (299)
162 KOG0306|consensus 32.4 8.6E+02 0.019 29.3 13.7 178 272-486 433-622 (888)
163 KOG0288|consensus 32.1 4.4E+02 0.0095 29.5 10.8 92 242-340 234-336 (459)
164 PF13645 YkuD_2: L,D-transpept 30.9 90 0.0019 30.6 5.0 35 248-290 32-66 (176)
165 PF13970 DUF4221: Domain of un 30.1 1.4E+02 0.0031 31.0 6.8 65 273-342 67-131 (333)
166 COG3211 PhoX Predicted phospha 29.5 1.2E+02 0.0025 35.1 6.2 66 457-522 417-516 (616)
167 KOG0307|consensus 29.5 2.4E+02 0.0052 34.7 9.1 183 241-513 118-304 (1049)
168 KOG1274|consensus 28.7 1.2E+03 0.025 28.7 15.7 42 446-490 131-172 (933)
169 PF14298 DUF4374: Domain of un 28.3 1.2E+02 0.0026 33.7 6.1 61 271-339 365-429 (435)
170 KOG0263|consensus 27.7 1.7E+02 0.0037 34.5 7.2 51 274-335 600-650 (707)
171 PF02897 Peptidase_S9_N: Proly 27.2 7.6E+02 0.016 26.0 13.4 136 178-342 275-412 (414)
172 KOG0263|consensus 26.6 7.6E+02 0.016 29.4 12.1 32 458-490 621-652 (707)
173 TIGR03074 PQQ_membr_DH membran 25.6 2.4E+02 0.0052 33.6 8.2 64 274-339 205-283 (764)
174 KOG1445|consensus 25.4 1.2E+03 0.026 27.8 18.2 28 459-486 816-844 (1012)
175 PTZ00421 coronin; Provisional 25.2 1E+03 0.022 26.8 15.6 28 459-486 128-156 (493)
176 TIGR03118 PEPCTERM_chp_1 conse 24.8 9.1E+02 0.02 26.2 19.4 59 237-308 20-85 (336)
177 KOG0315|consensus 24.6 8.6E+02 0.019 25.8 18.3 50 275-336 107-156 (311)
178 KOG1898|consensus 23.7 1.5E+03 0.033 28.4 15.1 20 275-294 855-874 (1205)
179 KOG4378|consensus 23.6 1.2E+03 0.026 27.0 13.0 181 253-486 92-280 (673)
180 KOG0313|consensus 23.4 3.5E+02 0.0077 29.9 8.2 53 273-337 281-333 (423)
181 KOG0293|consensus 23.0 7.5E+02 0.016 27.9 10.6 52 275-336 293-344 (519)
182 smart00564 PQQ beta-propeller 22.5 1.7E+02 0.0036 19.4 3.9 17 273-289 16-32 (33)
183 COG3670 Lignostilbene-alpha,be 22.2 1.8E+02 0.0039 32.9 5.9 134 194-342 262-415 (490)
184 PRK13684 Ycf48-like protein; P 22.2 5.5E+02 0.012 27.0 9.5 81 240-343 215-296 (334)
185 PRK01742 tolB translocation pr 20.4 1.1E+03 0.023 25.4 14.5 23 316-338 305-328 (429)
No 1
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=100.00 E-value=1.1e-64 Score=513.39 Aligned_cols=253 Identities=35% Similarity=0.686 Sum_probs=213.3
Q ss_pred eEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeec-CCCCeEE
Q psy11539 240 ISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVE-DCDHVFA 318 (530)
Q Consensus 240 vSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~-~c~~~~A 318 (530)
+||++++||+||||||||+|.++..+.+.+.|+|||++|||+||+++++|.||++++++.|+|++|+||.++ +|+++||
T Consensus 1 ~sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 1 VSVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp S-EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred CcccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 699999999999999999999998877788999999999999999999999999999999999999999976 6999999
Q ss_pred EEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccC
Q psy11539 319 YVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYN 398 (530)
Q Consensus 319 YItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~ 398 (530)
||||++.+||||||+++|++|||+|++|+++|.+..|.++|+.|+|.+|++||||+|..
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~--------------------- 139 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS--------------------- 139 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS---------------------
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC---------------------
Confidence 99999999999999999999999999999999999999999999999999999999964
Q ss_pred CccccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCC
Q psy11539 399 GTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKH 478 (530)
Q Consensus 399 ~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~ 478 (530)
.++|+||||||+|+++|+|+|++|++++.+. ...+...|+.+|+|| +|++|+++|++|+|||++++++
T Consensus 140 ---------~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~-~~~~~~~v~~lG~k~--~~s~g~~~D~~G~ly~~~~~~~ 207 (287)
T PF03022_consen 140 ---------PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSD-AQALASQVQDLGDKG--SQSDGMAIDPNGNLYFTDVEQN 207 (287)
T ss_dssp ---------TTS-EEEEEETT-SEEEEEEHHHHCSTT--H-HH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCT
T ss_pred ---------CCccEEEEEeCCCCcEEEEEHHHhhCccccc-cccccccceeccccC--CCCceEEECCCCcEEEecCCCC
Confidence 3459999999999999999999999999853 222577899999987 7999999999999999999999
Q ss_pred eEEEEeCCCCccccCceeEEeecCCceeecceeEEec--CCcEEEEEeecee
Q psy11539 479 SVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEE--EKENTCTFLVNKY 528 (530)
Q Consensus 479 aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~--dG~lYv~~~snr~ 528 (530)
+|+|||++ ++|.++|+++|++|++.|+||++++|+. +|+||| ++||+
T Consensus 208 aI~~w~~~-~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v--~snrl 256 (287)
T PF03022_consen 208 AIGCWDPD-GPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV--LSNRL 256 (287)
T ss_dssp EEEEEETT-TSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE--EE-S-
T ss_pred eEEEEeCC-CCcCccchheeEEcCceeeccceeeeccccCceEEE--EECcc
Confidence 99999999 9999999999999887799999999999 887776 88886
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.47 E-value=2.2e-11 Score=119.11 Aligned_cols=231 Identities=13% Similarity=0.051 Sum_probs=153.1
Q ss_pred ceeeeEEe--CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEe-CCCcEEEEeC
Q psy11539 182 LPLGIGIW--RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVD-KCDRLWIMDT 258 (530)
Q Consensus 182 iP~GV~v~--~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID-~cgRLWVLDt 258 (530)
+|.|+.+. +++||++--. . ..|.+++..... ..+... . .+.++.++ +.|+|||.|.
T Consensus 1 l~Egp~~d~~~g~l~~~D~~--~---~~i~~~~~~~~~--~~~~~~-----------~---~~~G~~~~~~~g~l~v~~~ 59 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIP--G---GRIYRVDPDTGE--VEVIDL-----------P---GPNGMAFDRPDGRLYVADS 59 (246)
T ss_dssp CEEEEEEETTTTEEEEEETT--T---TEEEEEETTTTE--EEEEES-----------S---SEEEEEEECTTSEEEEEET
T ss_pred CCcceEEECCCCEEEEEEcC--C---CEEEEEECCCCe--EEEEec-----------C---CCceEEEEccCCEEEEEEc
Confidence 47888887 6999888433 1 378888764311 111111 1 18888999 7899999998
Q ss_pred CCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCC--------CeEEE
Q psy11539 259 GVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFR--------YGLIV 330 (530)
Q Consensus 259 G~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~--------~gLIV 330 (530)
+. +.++|++++++...+..+.. -.....+||+++| .++.+|+||+.. ++|+.
T Consensus 60 ~~--------------~~~~d~~~g~~~~~~~~~~~-~~~~~~~ND~~vd-----~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 60 GG--------------IAVVDPDTGKVTVLADLPDG-GVPFNRPNDVAVD-----PDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp TC--------------EEEEETTTTEEEEEEEEETT-CSCTEEEEEEEE------TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred Cc--------------eEEEecCCCcEEEEeeccCC-CcccCCCceEEEc-----CCCCEEEEecCCCccccccccceEE
Confidence 76 56669999988777776432 1145778999999 678899999974 34666
Q ss_pred EEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCC
Q psy11539 331 YDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQ 410 (530)
Q Consensus 331 yDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 410 (530)
++.. ++..++. .+ + ...+||+++|++
T Consensus 120 ~~~~-~~~~~~~---------------~~--~---~~pNGi~~s~dg--------------------------------- 145 (246)
T PF08450_consen 120 IDPD-GKVTVVA---------------DG--L---GFPNGIAFSPDG--------------------------------- 145 (246)
T ss_dssp EETT-SEEEEEE---------------EE--E---SSEEEEEEETTS---------------------------------
T ss_pred ECCC-CeEEEEe---------------cC--c---ccccceEECCcc---------------------------------
Confidence 7666 4433222 11 1 134799999986
Q ss_pred ceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEEEeCCCCcc
Q psy11539 411 RYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVY 490 (530)
Q Consensus 411 r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~cWnt~~~~~ 490 (530)
++||+.-....++|+++...=.. .+ .....+..+... .+.++|+++|++|+||++....+.|.++|++ +.+
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~-~~-----~~~~~~~~~~~~--~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGG-EL-----SNRRVFIDFPGG--PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTC-CE-----EEEEEEEE-SSS--SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred hheeecccccceeEEEecccccc-ce-----eeeeeEEEcCCC--CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 89999999999999997432110 01 001112222211 1359999999999999999999999999999 754
Q ss_pred ccCceeEEeecCCceeecceeEEe--cCCcEEEEE
Q psy11539 491 LPQTQDIVQTSRDILNFREEGEEE--EEKENTCTF 523 (530)
Q Consensus 491 ~~~n~~lV~~d~~~L~~Pd~l~Id--~dG~lYv~~ 523 (530)
..+|.. + ...|+.+.+. ..+.|||+.
T Consensus 217 ----~~~i~~-p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 217 ----LREIEL-P--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ----EEEEE--S--SSSEEEEEEESTTSSEEEEEE
T ss_pred ----EEEEcC-C--CCCEEEEEEECCCCCEEEEEe
Confidence 334443 2 3479999995 446888864
No 3
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=3.1e-09 Score=125.41 Aligned_cols=278 Identities=10% Similarity=0.058 Sum_probs=165.4
Q ss_pred CceeeeEEe--CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCC-Cc-CCCC--CCCCceEEEEEEEeCCC-cE
Q psy11539 181 NLPLGIGIW--RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNW-SY-FDDS--NCNSLISVFRMSVDKCD-RL 253 (530)
Q Consensus 181 ~iP~GV~v~--~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw-~w-n~~~--nc~~LvSV~rv~ID~cg-RL 253 (530)
..|.|+++. .++|||+-.. .+ .+.+++... . .+.-..+- +. ...+ +...|..+++|.+|..+ .|
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~--n~---rI~v~d~~G-~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSN--HN---RIVVTDLDG-N---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred CCCceEEEECCCCeEEEEECC--CC---eEEEEeCCC-C---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 578899996 6899999643 11 455555431 1 11111110 00 0011 12468889999999865 59
Q ss_pred EEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEEC-C-------Cccc---ccCccccceEEEeecCCCCeEEEEec
Q psy11539 254 WIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYIL-P-------TAQV---FEGSLFSNIVTEVVEDCDHVFAYVND 322 (530)
Q Consensus 254 WVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~-P-------~~v~---~~~S~lndIvVDv~~~c~~~~AYItD 322 (530)
||.|++.. .|.+||+.++.+ +++.- . .... .......+|++| -.++.+||+|
T Consensus 639 YVaDt~n~------------~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d----p~~g~LyVad 701 (1057)
T PLN02919 639 YVADTENH------------ALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE----PVNEKVYIAM 701 (1057)
T ss_pred EEEeCCCc------------eEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEe----cCCCeEEEEE
Confidence 99999863 388999987654 33321 0 0000 001233578888 2478999999
Q ss_pred CCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEe--eecCCccceecCCCcccccccCCCcccccccccccCCc
Q psy11539 323 VFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKF--RWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGT 400 (530)
Q Consensus 323 sg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f--~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~ 400 (530)
.+.+.|.+||..++....+...-. ....+|..- .......|||++|++
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~-------~~~~~g~~~~~~~~~~P~GIavspdG----------------------- 751 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGY-------ERNLNGSSGTSTSFAQPSGISLSPDL----------------------- 751 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCc-------cccCCCCccccccccCccEEEEeCCC-----------------------
Confidence 999999999999885543321100 000111000 001234577887765
Q ss_pred cccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccc------cCCCCCcceEEcCCCcEEEEc
Q psy11539 401 NVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSR------FKNTQASASAINSNGVMFYNL 474 (530)
Q Consensus 401 ~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~r------G~~sqs~G~aiD~~G~LYft~ 474 (530)
++||..---+.++..++..--..................+|+. .....+.|+++|.+|.||+++
T Consensus 752 ----------~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD 821 (1057)
T PLN02919 752 ----------KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD 821 (1057)
T ss_pred ----------CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence 7899988888888888754211000000000000111122221 112357899999999999999
Q ss_pred cCCCeEEEEeCCCCccccCceeEEee-----------cCCceeecceeEEecCCcEEEEEeeceee
Q psy11539 475 VTKHSVGCWNTKTKVYLPQTQDIVQT-----------SRDILNFREEGEEEEEKENTCTFLVNKYV 529 (530)
Q Consensus 475 ~~~~aI~cWnt~~~~~~~~n~~lV~~-----------d~~~L~~Pd~l~Id~dG~lYv~~~snr~~ 529 (530)
..++.|..||++++.. ..++. ....|..|.|++++.+|.+||....|..|
T Consensus 822 s~N~rIrviD~~tg~v-----~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 822 SYNHKIKKLDPATKRV-----TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCCCEEEEEECCCCeE-----EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 9999999999983321 11221 12357789999999999999999998876
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=6.9e-09 Score=101.52 Aligned_cols=194 Identities=12% Similarity=0.038 Sum_probs=127.2
Q ss_pred EEEEEeC-CCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEe
Q psy11539 243 FRMSVDK-CDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVN 321 (530)
Q Consensus 243 ~rv~ID~-cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYIt 321 (530)
-++..|+ .|+||++|... .+|+.+|+++++. ..+.++. .+.++++ +.++.+||+
T Consensus 3 Egp~~d~~~g~l~~~D~~~------------~~i~~~~~~~~~~-~~~~~~~--------~~G~~~~----~~~g~l~v~ 57 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPG------------GRIYRVDPDTGEV-EVIDLPG--------PNGMAFD----RPDGRLYVA 57 (246)
T ss_dssp EEEEEETTTTEEEEEETTT------------TEEEEEETTTTEE-EEEESSS--------EEEEEEE----CTTSEEEEE
T ss_pred cceEEECCCCEEEEEEcCC------------CEEEEEECCCCeE-EEEecCC--------CceEEEE----ccCCEEEEE
Confidence 3677886 99999999875 4699999988755 3466644 6788888 467999999
Q ss_pred cCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCcc
Q psy11539 322 DVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTN 401 (530)
Q Consensus 322 Dsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~ 401 (530)
+.. ++.++|+.+++.-.+.+... .+..+. +.+.+++++++
T Consensus 58 ~~~--~~~~~d~~~g~~~~~~~~~~-----------~~~~~~---~~ND~~vd~~G------------------------ 97 (246)
T PF08450_consen 58 DSG--GIAVVDPDTGKVTVLADLPD-----------GGVPFN---RPNDVAVDPDG------------------------ 97 (246)
T ss_dssp ETT--CEEEEETTTTEEEEEEEEET-----------TCSCTE---EEEEEEE-TTS------------------------
T ss_pred EcC--ceEEEecCCCcEEEEeeccC-----------CCcccC---CCceEEEcCCC------------------------
Confidence 974 66777999985554443210 000111 34567777765
Q ss_pred ccccccCCCceEEEEeCCC--------CeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCC-cEEE
Q psy11539 402 VDKTIRDDQRYMYFHSMSS--------NRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNG-VMFY 472 (530)
Q Consensus 402 ~~~~~~~~~r~LYf~plsS--------~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G-~LYf 472 (530)
.|||+-+.. .++|++... - .++.+.+. ...+-|++++.+| .||+
T Consensus 98 ----------~ly~t~~~~~~~~~~~~g~v~~~~~~-~--------------~~~~~~~~--~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 98 ----------NLYVTDSGGGGASGIDPGSVYRIDPD-G--------------KVTVVADG--LGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp -----------EEEEEECCBCTTCGGSEEEEEEETT-S--------------EEEEEEEE--ESSEEEEEEETTSSEEEE
T ss_pred ----------CEEEEecCCCccccccccceEEECCC-C--------------eEEEEecC--cccccceEECCcchheee
Confidence 388887755 347777643 1 12222221 1358899999777 5999
Q ss_pred EccCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEeecee
Q psy11539 473 NLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLVNKY 528 (530)
Q Consensus 473 t~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~snr~ 528 (530)
++...+.|..++.+.......+.++++.-....-+|||+++|.+|+|||....+..
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 99999999999985111112234455433333458999999999999998765543
No 5
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=3.3e-08 Score=102.34 Aligned_cols=192 Identities=15% Similarity=0.061 Sum_probs=126.2
Q ss_pred EEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEe
Q psy11539 242 VFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVN 321 (530)
Q Consensus 242 V~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYIt 321 (530)
.....+|..++|++++.| +..+|++++..+..+.-+++ -.+...+||++|| .++.+|++
T Consensus 69 ~~~~~~d~~g~Lv~~~~g---------------~~~~~~~~~~~~t~~~~~~~-~~~~~r~ND~~v~-----pdG~~wfg 127 (307)
T COG3386 69 SSGALIDAGGRLIACEHG---------------VRLLDPDTGGKITLLAEPED-GLPLNRPNDGVVD-----PDGRIWFG 127 (307)
T ss_pred ccceeecCCCeEEEEccc---------------cEEEeccCCceeEEeccccC-CCCcCCCCceeEc-----CCCCEEEe
Confidence 445678999999999999 45566667766543433333 3445889999999 56899999
Q ss_pred cCCC-----------CeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccc
Q psy11539 322 DVFR-----------YGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYY 390 (530)
Q Consensus 322 Dsg~-----------~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y 390 (530)
|.+. +.|+.+|.. |..-|+... .+ . ..+|||+||++
T Consensus 128 t~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~---------~~-------~---~~NGla~SpDg------------- 174 (307)
T COG3386 128 DMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDD---------DL-------T---IPNGLAFSPDG------------- 174 (307)
T ss_pred CCCccccCccccCCcceEEEEcCC-CCEEEeecC---------cE-------E---ecCceEECCCC-------------
Confidence 9982 124444432 222221110 01 1 24799999987
Q ss_pred cccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEec-cccCCCCCcceEEcCCCc
Q psy11539 391 HYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLG-SRFKNTQASASAINSNGV 469 (530)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG-~rG~~sqs~G~aiD~~G~ 469 (530)
++||+......++++++... ..... .. ...+.... +. +.++|+++|++|+
T Consensus 175 --------------------~tly~aDT~~~~i~r~~~d~-~~g~~----~~-~~~~~~~~~~~---G~PDG~~vDadG~ 225 (307)
T COG3386 175 --------------------KTLYVADTPANRIHRYDLDP-ATGPI----GG-RRGFVDFDEEP---GLPDGMAVDADGN 225 (307)
T ss_pred --------------------CEEEEEeCCCCeEEEEecCc-ccCcc----CC-cceEEEccCCC---CCCCceEEeCCCC
Confidence 89999999999999998764 11111 01 12222332 33 4799999999999
Q ss_pred EEEEccCC-CeEEEEeCCCCccccCceeEEeecCCceeecceeEEecC--CcEEEEEe
Q psy11539 470 MFYNLVTK-HSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEE--KENTCTFL 524 (530)
Q Consensus 470 LYft~~~~-~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~d--G~lYv~~~ 524 (530)
||...... .+|.+|+++ +... +.+.. +. .+|+.+.+... ..|||+..
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~----~~i~l-P~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLL----GEIKL-PV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEecccCCceEEEECCC-CcEE----EEEEC-CC--CCCccceEeCCCcCEEEEEec
Confidence 99766655 499999999 7542 23332 32 78888888763 67888554
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=4.2e-08 Score=116.00 Aligned_cols=231 Identities=13% Similarity=0.065 Sum_probs=138.4
Q ss_pred CCceEEEEEEEeC-CCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEEC-CCccccc-------CccccceEE
Q psy11539 237 NSLISVFRMSVDK-CDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYIL-PTAQVFE-------GSLFSNIVT 307 (530)
Q Consensus 237 ~~LvSV~rv~ID~-cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~-P~~v~~~-------~S~lndIvV 307 (530)
..|..+-++.+|. .|+|||.|++. -+|.+||+ +++++..+.- ...-... ......|+|
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n------------~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav 631 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNH------------NRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY 631 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCC------------CeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEE
Confidence 4567778999997 58899999986 35999998 4666554432 1110011 124578999
Q ss_pred EeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCe---EeeecCCccceecCCCcccccccC
Q psy11539 308 EVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNL---KFRWVDGIFGMAISPELSGYKYKR 384 (530)
Q Consensus 308 Dv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~---~f~~~dGi~GIALsp~~~~~~~~~ 384 (530)
| .+++.+||+|.+.+.|.++|+.++..-.+...-.. .+...|. ..+......||+++|++
T Consensus 632 d----~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~------g~~~~gg~~~~~~~ln~P~gVa~dp~~------- 694 (1057)
T PLN02919 632 N----AKKNLLYVADTENHALREIDFVNETVRTLAGNGTK------GSDYQGGKKGTSQVLNSPWDVCFEPVN------- 694 (1057)
T ss_pred e----CCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc------cCCCCCChhhhHhhcCCCeEEEEecCC-------
Confidence 8 24678999999999999999998865444321000 0000010 00000112355666543
Q ss_pred CCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEE
Q psy11539 385 HPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAI 464 (530)
Q Consensus 385 ~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~ai 464 (530)
+.||.+--...+++.++...-....+.. ++.........+......++.|+++
T Consensus 695 --------------------------g~LyVad~~~~~I~v~d~~~g~v~~~~G-~G~~~~~~g~~~~~~~~~~P~GIav 747 (1057)
T PLN02919 695 --------------------------EKVYIAMAGQHQIWEYNISDGVTRVFSG-DGYERNLNGSSGTSTSFAQPSGISL 747 (1057)
T ss_pred --------------------------CeEEEEECCCCeEEEEECCCCeEEEEec-CCccccCCCCccccccccCccEEEE
Confidence 5788877777777777642211111100 0000000000111111246889999
Q ss_pred cCCCc-EEEEccCCCeEEEEeCCCCccccCceeEEee-------------------cCCceeecceeEEecCCcEEEEEe
Q psy11539 465 NSNGV-MFYNLVTKHSVGCWNTKTKVYLPQTQDIVQT-------------------SRDILNFREEGEEEEEKENTCTFL 524 (530)
Q Consensus 465 D~~G~-LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~-------------------d~~~L~~Pd~l~Id~dG~lYv~~~ 524 (530)
+.+|. ||+++...+.|.+||.+++.. .+++. ....+..|.|++++.+|.+||...
T Consensus 748 spdG~~LYVADs~n~~Irv~D~~tg~~-----~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs 822 (1057)
T PLN02919 748 SPDLKELYIADSESSSIRALDLKTGGS-----RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS 822 (1057)
T ss_pred eCCCCEEEEEECCCCeEEEEECCCCcE-----EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC
Confidence 98775 999999999999999873321 11110 123577899999999999999999
Q ss_pred eceee
Q psy11539 525 VNKYV 529 (530)
Q Consensus 525 snr~~ 529 (530)
.|..|
T Consensus 823 ~N~rI 827 (1057)
T PLN02919 823 YNHKI 827 (1057)
T ss_pred CCCEE
Confidence 88775
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.44 E-value=1.7e-05 Score=81.28 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=155.6
Q ss_pred eEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEE
Q psy11539 240 ISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAY 319 (530)
Q Consensus 240 vSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AY 319 (530)
...+.|..+.+|-+|.-+.|... |=-.|.+||++. +|.|+. ++....|+++ .++-++
T Consensus 62 ~ap~dvapapdG~VWft~qg~ga------------iGhLdP~tGev~-~ypLg~-----Ga~Phgiv~g-----pdg~~W 118 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGA------------IGHLDPATGEVE-TYPLGS-----GASPHGIVVG-----PDGSAW 118 (353)
T ss_pred CCccccccCCCCceEEecCcccc------------ceecCCCCCceE-EEecCC-----CCCCceEEEC-----CCCCee
Confidence 45788899999999999998754 667899999875 699965 5667889998 689999
Q ss_pred EecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeee---cCCccceecCCCcccccccCCCcccccccccc
Q psy11539 320 VNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRW---VDGIFGMAISPELSGYKYKRHPYEYYHYNVHH 396 (530)
Q Consensus 320 ItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~---~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~ 396 (530)
|+|.+. +|..+|.++..+-|+..+--+++..-.+-..++.-..| ..|+.| -|.|..+.+++-..|
T Consensus 119 itd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG-rLdPa~~~i~vfpaP---------- 186 (353)
T COG4257 119 ITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG-RLDPARNVISVFPAP---------- 186 (353)
T ss_pred EecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce-ecCcccCceeeeccC----------
Confidence 999998 99999999999999875422222111122223322233 345555 577776666664444
Q ss_pred cCCccccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccC
Q psy11539 397 YNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVT 476 (530)
Q Consensus 397 ~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~ 476 (530)
-+++-.++....++ -+||+.|.+.-+-+|++..-.-+.+.. .-+ +...+..+..|..|.+..++-.
T Consensus 187 qG~gpyGi~atpdG-svwyaslagnaiaridp~~~~aev~p~----------P~~---~~~gsRriwsdpig~~wittwg 252 (353)
T COG4257 187 QGGGPYGICATPDG-SVWYASLAGNAIARIDPFAGHAEVVPQ----------PNA---LKAGSRRIWSDPIGRAWITTWG 252 (353)
T ss_pred CCCCCcceEECCCC-cEEEEeccccceEEcccccCCcceecC----------CCc---ccccccccccCccCcEEEeccC
Confidence 23444455655554 489999999999888764322221110 001 1123566778899999999999
Q ss_pred CCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEE
Q psy11539 477 KHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCT 522 (530)
Q Consensus 477 ~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~ 522 (530)
..+++++|+.++.+.. ..+ +..-.-|.++.||..|.+|+.
T Consensus 253 ~g~l~rfdPs~~sW~e--ypL----Pgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 253 TGSLHRFDPSVTSWIE--YPL----PGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred CceeeEeCccccccee--eeC----CCCCCCcceeeeccCCcEEee
Confidence 9999999998554421 111 223345889999999999883
No 8
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.00031 Score=73.15 Aligned_cols=187 Identities=13% Similarity=0.087 Sum_probs=111.4
Q ss_pred eCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCe
Q psy11539 248 DKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYG 327 (530)
Q Consensus 248 D~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~g 327 (530)
++.++||.+|... ++|+.||+.+++. +.+..|..+ .+-+.+| .++.+...+.+
T Consensus 34 ~~~~~L~w~DI~~------------~~i~r~~~~~g~~-~~~~~p~~~------~~~~~~d-----~~g~Lv~~~~g--- 86 (307)
T COG3386 34 PDRGALLWVDILG------------GRIHRLDPETGKK-RVFPSPGGF------SSGALID-----AGGRLIACEHG--- 86 (307)
T ss_pred CCCCEEEEEeCCC------------CeEEEecCCcCce-EEEECCCCc------ccceeec-----CCCeEEEEccc---
Confidence 4567799999875 5699999987654 457776543 3445666 56777777754
Q ss_pred EEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEe-eecCCccceecCCCcccccccCCCcccccccccccCCccccccc
Q psy11539 328 LIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKF-RWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTI 406 (530)
Q Consensus 328 LIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f-~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 406 (530)
+..++.+++..|+..... + +|.+. .+.|| .+.|+
T Consensus 87 ~~~~~~~~~~~~t~~~~~---~--------~~~~~~r~ND~----~v~pd------------------------------ 121 (307)
T COG3386 87 VRLLDPDTGGKITLLAEP---E--------DGLPLNRPNDG----VVDPD------------------------------ 121 (307)
T ss_pred cEEEeccCCceeEEeccc---c--------CCCCcCCCCce----eEcCC------------------------------
Confidence 466666777777655321 1 11111 11221 22333
Q ss_pred cCCCceEEEEeCCC----C-------eeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCC-cEEEEc
Q psy11539 407 RDDQRYMYFHSMSS----N-------RHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNG-VMFYNL 474 (530)
Q Consensus 407 ~~~~r~LYf~plsS----~-------~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G-~LYft~ 474 (530)
..+||..|++ . .+|+++.. ...++.+-+. -..+-|++++.+| .||+++
T Consensus 122 ----G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--------------g~~~~l~~~~--~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 122 ----GRIWFGDMGYFDLGKSEERPTGSLYRVDPD--------------GGVVRLLDDD--LTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ----CCEEEeCCCccccCccccCCcceEEEEcCC--------------CCEEEeecCc--EEecCceEECCCCCEEEEEe
Confidence 2466666662 1 36666521 1122222221 2478999999777 999999
Q ss_pred cCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEeec
Q psy11539 475 VTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLVN 526 (530)
Q Consensus 475 ~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~sn 526 (530)
...+.|.+++-+.......+....+.-+..=-.|||+.+|.+|++|+.+..+
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 9999999987651011111222122112223569999999999999877765
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.05 E-value=0.00043 Score=72.03 Aligned_cols=226 Identities=15% Similarity=0.242 Sum_probs=127.2
Q ss_pred CCCceeeeEEe--CCeEEEEccCCCCCCCcEEEEEECCCCCC-CCc--cCCCCCCCcCCCCCCCCceEEEEEEEeCCCc-
Q psy11539 179 ENNLPLGIGIW--RSTIFLSFPKWKAGIPFTLASFNMNDPSE-SPI--LLPYPNWSYFDDSNCNSLISVFRMSVDKCDR- 252 (530)
Q Consensus 179 ~n~iP~GV~v~--~gRlFVTiPR~~~GvP~TLa~V~~~~~~~-sP~--L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgR- 252 (530)
...-|..|+++ +..||++- +..| ++..+.....+. ... +..++.-. .......--.+..+.+++.|+
T Consensus 85 ~g~~p~~i~~~~~g~~l~van--y~~g---~v~v~~l~~~g~l~~~~~~~~~~g~g--~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVAN--YGGG---SVSVFPLDDDGSLGEVVQTVRHEGSG--PNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEE--TTTT---EEEEEEECTTSEEEEEEEEEESEEEE--SSTTTTSSTCEEEEEE-TTSSE
T ss_pred CCCCcEEEEEecCCCEEEEEE--ccCC---eEEEEEccCCcccceeeeecccCCCC--CcccccccccceeEEECCCCCE
Confidence 34467788885 45566663 2233 666666543321 000 11110000 001122345677889998865
Q ss_pred EEEEeCCCCCcccCccccCCCEEEEEECCCCc--EEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEE
Q psy11539 253 LWIMDTGVTNILSSIQQLCPPKIMVFDLKTNT--LIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIV 330 (530)
Q Consensus 253 LWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~--li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIV 330 (530)
|||.|.|.- +|.+|++..+. +...-.+ .+..++....|+++ -++.++|+++.....|.|
T Consensus 158 v~v~dlG~D------------~v~~~~~~~~~~~l~~~~~~---~~~~G~GPRh~~f~----pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 158 VYVPDLGAD------------RVYVYDIDDDTGKLTPVDSI---KVPPGSGPRHLAFS----PDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp EEEEETTTT------------EEEEEEE-TTS-TEEEEEEE---ECSTTSSEEEEEE-----TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCC------------EEEEEEEeCCCceEEEeecc---ccccCCCCcEEEEc----CCcCEEEEecCCCCcEEE
Confidence 999999963 48888887765 6442222 13457889999998 367899999999999999
Q ss_pred EEcc--CCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccC
Q psy11539 331 YDFF--KNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRD 408 (530)
Q Consensus 331 yDl~--~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 408 (530)
|++. +|+.-.+..-...|+. + .|. ...-+|+|+|++
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~----~--~~~-----~~~~~i~ispdg------------------------------- 256 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEG----F--TGE-----NAPAEIAISPDG------------------------------- 256 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETT----S--CSS-----SSEEEEEE-TTS-------------------------------
T ss_pred EeecccCCceeEEEEeeecccc----c--ccc-----CCceeEEEecCC-------------------------------
Confidence 9999 5533222221222210 0 111 123467888776
Q ss_pred CCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCc-EEEEccCCCeEEEEeC
Q psy11539 409 DQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGV-MFYNLVTKHSVGCWNT 485 (530)
Q Consensus 409 ~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~-LYft~~~~~aI~cWnt 485 (530)
++||.+--.+..+-..+.+. ....+ ..++.+-..| ..+.++++|.+|. ||++.-..+.|.+|+.
T Consensus 257 --~~lyvsnr~~~sI~vf~~d~-~~g~l--------~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 257 --RFLYVSNRGSNSISVFDLDP-ATGTL--------TLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp --SEEEEEECTTTEEEEEEECT-TTTTE--------EEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred --CEEEEEeccCCEEEEEEEec-CCCce--------EEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 89999887776654443210 01111 1222222223 2589999996665 7778888888887754
No 10
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.03 E-value=0.0022 Score=65.30 Aligned_cols=232 Identities=14% Similarity=0.199 Sum_probs=126.5
Q ss_pred ceeeeEEe-CC-eEEEEccCCCCCCCcEEEEEECCCCCCC-CccCCCCCCCcCCCCCCCCceEEEEEEEeCCC-cEEEEe
Q psy11539 182 LPLGIGIW-RS-TIFLSFPKWKAGIPFTLASFNMNDPSES-PILLPYPNWSYFDDSNCNSLISVFRMSVDKCD-RLWIMD 257 (530)
Q Consensus 182 iP~GV~v~-~g-RlFVTiPR~~~GvP~TLa~V~~~~~~~s-P~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cg-RLWVLD 257 (530)
-|.++.++ ++ ++|++- +.. -+|..++.+..+.- ..+... .+...+..+.++.+| .|||.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~--~~~---~~v~v~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 81 SPTHISTDHQGRFLFSAS--YNA---NCVSVSPLDKDGIPVAPIQII-----------EGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CceEEEECCCCCEEEEEE--cCC---CeEEEEEECCCCCCCCceeec-----------cCCCcccEeEeCCCCCEEEEee
Confidence 37788887 44 577663 222 25666665422210 011111 122345667788876 577888
Q ss_pred CCCCCcccCccccCCCEEEEEECCCCcEEE-----EEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEE
Q psy11539 258 TGVTNILSSIQQLCPPKIMVFDLKTNTLIR-----KYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYD 332 (530)
Q Consensus 258 tG~~~~~~~~~~~c~PKLvvfDL~Td~li~-----~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyD 332 (530)
.|. .+|.+||+.++..+. .+.++ .++....++++ -++.++|+++.+...|.|||
T Consensus 145 ~~~------------~~v~v~d~~~~g~l~~~~~~~~~~~-----~g~~p~~~~~~----pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 145 LKE------------DRIRLFTLSDDGHLVAQEPAEVTTV-----EGAGPRHMVFH----PNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred CCC------------CEEEEEEECCCCcccccCCCceecC-----CCCCCceEEEC----CCCCEEEEEecCCCEEEEEE
Confidence 775 469999998754332 12222 24556778887 36789999999999999999
Q ss_pred ccC--CeEEEEcCC-CCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCC
Q psy11539 333 FFK--NTSYRLTHP-YMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDD 409 (530)
Q Consensus 333 l~~--g~swRv~h~-sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 409 (530)
+.. ++. ++.+. ...|.. + .+. .| ..+|+++|++
T Consensus 204 ~~~~~~~~-~~~~~~~~~p~~----~--~~~--~~---~~~i~~~pdg-------------------------------- 239 (330)
T PRK11028 204 LKDPHGEI-ECVQTLDMMPAD----F--SDT--RW---AADIHITPDG-------------------------------- 239 (330)
T ss_pred EeCCCCCE-EEEEEEecCCCc----C--CCC--cc---ceeEEECCCC--------------------------------
Confidence 984 332 32221 111110 0 010 11 1257777765
Q ss_pred CceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCC-cEEEEccCCCeEEEEeCC--
Q psy11539 410 QRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNG-VMFYNLVTKHSVGCWNTK-- 486 (530)
Q Consensus 410 ~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G-~LYft~~~~~aI~cWnt~-- 486 (530)
++||-.-..+..+..++.+. +. . ..+.++.......+.++.++.+| .||++.-..+.|..|..+
T Consensus 240 -~~lyv~~~~~~~I~v~~i~~--~~-------~---~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 240 -RHLYACDRTASLISVFSVSE--DG-------S---VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred -CEEEEecCCCCeEEEEEEeC--CC-------C---eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 78888654444444333210 00 0 11222221111357789999666 788888778888888653
Q ss_pred CCccccCceeEEeecCCceeecceeEE
Q psy11539 487 TKVYLPQTQDIVQTSRDILNFREEGEE 513 (530)
Q Consensus 487 ~~~~~~~n~~lV~~d~~~L~~Pd~l~I 513 (530)
++. ...+. .-..-.+|..++|
T Consensus 307 ~g~-----l~~~~-~~~~g~~P~~~~~ 327 (330)
T PRK11028 307 TGL-----LTELG-RYAVGQGPMWVSV 327 (330)
T ss_pred CCc-----EEEcc-ccccCCCceEEEE
Confidence 122 22222 2223456777766
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.95 E-value=0.0011 Score=67.61 Aligned_cols=203 Identities=11% Similarity=0.009 Sum_probs=113.7
Q ss_pred EEEEEEEeCCCc-EEEEeCCCCCcccCccccCCCEEEEEECCCCc-EEEEEE-CCCcccccCccccceEEEeecCCCCeE
Q psy11539 241 SVFRMSVDKCDR-LWIMDTGVTNILSSIQQLCPPKIMVFDLKTNT-LIRKYI-LPTAQVFEGSLFSNIVTEVVEDCDHVF 317 (530)
Q Consensus 241 SV~rv~ID~cgR-LWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~-li~~y~-~P~~v~~~~S~lndIvVDv~~~c~~~~ 317 (530)
++..+.+|++|+ |++..-+. .+|.+||+.++. +..... ++ .......++++ .++.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~------------~~v~v~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~----p~g~~ 139 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNA------------NCVSVSPLDKDGIPVAPIQIIE-----GLEGCHSANID----PDNRT 139 (330)
T ss_pred CceEEEECCCCCEEEEEEcCC------------CeEEEEEECCCCCCCCceeecc-----CCCcccEeEeC----CCCCE
Confidence 456788998876 77765442 469999997643 222111 21 11233456666 46789
Q ss_pred EEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCccccccccccc
Q psy11539 318 AYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHY 397 (530)
Q Consensus 318 AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~ 397 (530)
+|+++.+.+.|.|||+.++....-.... ...+ .--.|..+|+++|++
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~--------~~~~-----~~g~~p~~~~~~pdg-------------------- 186 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPA--------EVTT-----VEGAGPRHMVFHPNQ-------------------- 186 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCC--------ceec-----CCCCCCceEEECCCC--------------------
Confidence 9999999999999999874221100000 0000 001245578888775
Q ss_pred CCccccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEecccc---C-CCCCcceEEcCCCc-EEE
Q psy11539 398 NGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRF---K-NTQASASAINSNGV-MFY 472 (530)
Q Consensus 398 ~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG---~-~sqs~G~aiD~~G~-LYf 472 (530)
++||-.-..+..+...+...- ...+ ..++.++..+ . ...+.+++++.+|. ||+
T Consensus 187 -------------~~lyv~~~~~~~v~v~~~~~~-~~~~--------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 187 -------------QYAYCVNELNSSVDVWQLKDP-HGEI--------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred -------------CEEEEEecCCCEEEEEEEeCC-CCCE--------EEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 677777665555655443210 0011 0111121100 0 01344688887765 888
Q ss_pred EccCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCC-cEEEEE
Q psy11539 473 NLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEK-ENTCTF 523 (530)
Q Consensus 473 t~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG-~lYv~~ 523 (530)
+....+.|..|+.+ .. .....++..- ..-.+|.++.++.+| +||+..
T Consensus 245 ~~~~~~~I~v~~i~-~~--~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 245 CDRTASLISVFSVS-ED--GSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred ecCCCCeEEEEEEe-CC--CCeEEEeEEE-eccccCCceEECCCCCEEEEEE
Confidence 87778899999875 21 0112333321 233689999998887 777654
No 12
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.93 E-value=0.0062 Score=58.88 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=49.6
Q ss_pred EEEEEeCCCc-EEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEe
Q psy11539 243 FRMSVDKCDR-LWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVN 321 (530)
Q Consensus 243 ~rv~ID~cgR-LWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYIt 321 (530)
..+.++..|+ |++...+. -.|.+||+.++++++++..... ...++++ .++..+|++
T Consensus 34 ~~l~~~~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~~~~~-------~~~~~~~----~~g~~l~~~ 90 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDS------------DTIQVIDLATGEVIGTLPSGPD-------PELFALH----PNGKILYIA 90 (300)
T ss_pred CceEECCCCCEEEEEECCC------------CeEEEEECCCCcEEEeccCCCC-------ccEEEEC----CCCCEEEEE
Confidence 3566777765 56665432 3499999999998876544222 2334554 356789999
Q ss_pred cCCCCeEEEEEccCCeE
Q psy11539 322 DVFRYGLIVYDFFKNTS 338 (530)
Q Consensus 322 Dsg~~gLIVyDl~~g~s 338 (530)
......|.+||+.+++.
T Consensus 91 ~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKV 107 (300)
T ss_pred cCCCCeEEEEECCCCeE
Confidence 87777899999988643
No 13
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.82 E-value=0.011 Score=62.27 Aligned_cols=61 Identities=3% Similarity=-0.013 Sum_probs=41.0
Q ss_pred CCcEEEEccCCCeEEEEeCC--CCccccCceeEEeecCCceeecceeEEecCCcEEEEEeecee
Q psy11539 467 NGVMFYNLVTKHSVGCWNTK--TKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLVNKY 528 (530)
Q Consensus 467 ~G~LYft~~~~~aI~cWnt~--~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~snr~ 528 (530)
+|.||+++.....|.+...+ ...+..+-...+.. ....--|-++.++.||.|||...++..
T Consensus 281 ~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~-~~~~~rp~dv~~~pDG~Lyv~d~~~~~ 343 (367)
T TIGR02604 281 RGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRS-NDTWFRPVNVTVGPDGALYVSDWYDRG 343 (367)
T ss_pred CCCEEeeeccCCEEEEEEeecCCCccEeecCceEec-CCCcccccceeECCCCCEEEEEeccCc
Confidence 48999999999999987653 12232221223332 223356888999999999999877654
No 14
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.0029 Score=64.12 Aligned_cols=211 Identities=13% Similarity=0.117 Sum_probs=105.6
Q ss_pred EEEEEEEeC-CCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEE
Q psy11539 241 SVFRMSVDK-CDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAY 319 (530)
Q Consensus 241 SV~rv~ID~-cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AY 319 (530)
.+-++..|+ .++||++=-. ++.|+.+|+ +|++++++.|... .=+-+|++- +++...
T Consensus 23 e~SGLTy~pd~~tLfaV~d~------------~~~i~els~-~G~vlr~i~l~g~-----~D~EgI~y~-----g~~~~v 79 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDE------------PGEIYELSL-DGKVLRRIPLDGF-----GDYEGITYL-----GNGRYV 79 (248)
T ss_dssp -EEEEEEETTTTEEEEEETT------------TTEEEEEET-T--EEEEEE-SS------SSEEEEEE------STTEEE
T ss_pred CccccEEcCCCCeEEEEECC------------CCEEEEEcC-CCCEEEEEeCCCC-----CCceeEEEE-----CCCEEE
Confidence 477888887 5789987333 367999998 6899999999431 124456663 556666
Q ss_pred EecCCCCeEEEEEccCCe--EEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCccccccccccc
Q psy11539 320 VNDVFRYGLIVYDFFKNT--SYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHY 397 (530)
Q Consensus 320 ItDsg~~gLIVyDl~~g~--swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~ 397 (530)
|++-..+.|++++..... .-+-. ...+.++ ..-.-..|+=|||.++.+
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~---------~~~~~l~-~~~~~N~G~EGla~D~~~-------------------- 129 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRAD---------VQKISLG-FPNKGNKGFEGLAYDPKT-------------------- 129 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEE---------EEEEE----S---SS--EEEEEETTT--------------------
T ss_pred EEEcCCCcEEEEEEeccccccchhh---------ceEEecc-cccCCCcceEEEEEcCCC--------------------
Confidence 777777888888884331 11100 0001100 000011256688887764
Q ss_pred CCccccccccCCCceEEEEeCCCC-eeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEc-CCCcEEEEcc
Q psy11539 398 NGTNVDKTIRDDQRYMYFHSMSSN-RHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAIN-SNGVMFYNLV 475 (530)
Q Consensus 398 ~~~~~~~~~~~~~r~LYf~plsS~-~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD-~~G~LYft~~ 475 (530)
..||..-=..+ ++|.++.-. ....+.. .+ ...+. +........+|+++| .+|.||+-.-
T Consensus 130 -------------~~L~v~kE~~P~~l~~~~~~~-~~~~~~~--~~-~~~~~--~~~~~~~d~S~l~~~p~t~~lliLS~ 190 (248)
T PF06977_consen 130 -------------NRLFVAKERKPKRLYEVNGFP-GGFDLFV--SD-DQDLD--DDKLFVRDLSGLSYDPRTGHLLILSD 190 (248)
T ss_dssp -------------TEEEEEEESSSEEEEEEESTT--SS--EE--EE--HHHH---HT--SS---EEEEETTTTEEEEEET
T ss_pred -------------CEEEEEeCCCChhhEEEcccc-Cccceee--cc-ccccc--cccceeccccceEEcCCCCeEEEEEC
Confidence 22332211111 355554311 0001100 00 00010 011122468899999 8899999999
Q ss_pred CCCeEEEEeCCCCccccCceeEEeecC------CceeecceeEEecCCcEEEEEeecee
Q psy11539 476 TKHSVGCWNTKTKVYLPQTQDIVQTSR------DILNFREEGEEEEEKENTCTFLVNKY 528 (530)
Q Consensus 476 ~~~aI~cWnt~~~~~~~~n~~lV~~d~------~~L~~Pd~l~Id~dG~lYv~~~snr~ 528 (530)
+...|.++|.+ +... ..+.... ..+.=|.||++|.+|+|||+.==|+|
T Consensus 191 es~~l~~~d~~-G~~~----~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlf 244 (248)
T PF06977_consen 191 ESRLLLELDRQ-GRVV----SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLF 244 (248)
T ss_dssp TTTEEEEE-TT---EE----EEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred CCCeEEEECCC-CCEE----EEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceE
Confidence 99999999988 6542 2333222 34666999999999999998766655
No 15
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.75 E-value=0.0033 Score=65.45 Aligned_cols=257 Identities=19% Similarity=0.181 Sum_probs=141.9
Q ss_pred CCCceeeeEEe--CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCc-EEE
Q psy11539 179 ENNLPLGIGIW--RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDR-LWI 255 (530)
Q Consensus 179 ~n~iP~GV~v~--~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgR-LWV 255 (530)
.-.-|.-++++ +++||++.-.. +...+|..+......+ .|+.--... ..=.++-.+.+|++++ |+|
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g--~L~~~~~~~-------~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTG--TLTLLNSVP-------SGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTT--EEEEEEEEE-------ESSSCEEEEEECTTSSEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcc--eeEEeeeec-------cCCCCcEEEEEecCCCEEEE
Confidence 44457777884 68888886554 1233555554432201 221110000 0123455678888765 778
Q ss_pred EeCCCCCcccCccccCCCEEEEEECCC-CcEEEEE---EC----CCcccccCccccceEEEeecCCCCeEEEEecCCCCe
Q psy11539 256 MDTGVTNILSSIQQLCPPKIMVFDLKT-NTLIRKY---IL----PTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYG 327 (530)
Q Consensus 256 LDtG~~~~~~~~~~~c~PKLvvfDL~T-d~li~~y---~~----P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~g 327 (530)
..-|. ..|.+|++.. +++.... .+ |...-...+....+.++ .++.++|++|.+...
T Consensus 104 any~~------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~----pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 104 ANYGG------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS----PDGRFVYVPDLGADR 167 (345)
T ss_dssp EETTT------------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-----TTSSEEEEEETTTTE
T ss_pred EEccC------------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC----CCCCEEEEEecCCCE
Confidence 77663 4499999987 4544432 22 11111234667788888 367899999999999
Q ss_pred EEEEEccCCe--EEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCcccccc
Q psy11539 328 LIVYDFFKNT--SYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKT 405 (530)
Q Consensus 328 LIVyDl~~g~--swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 405 (530)
|.+|++..+. .-+ .+ .+ .+..-.|.-.|+++|++
T Consensus 168 v~~~~~~~~~~~l~~-~~----------~~-----~~~~G~GPRh~~f~pdg---------------------------- 203 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTP-VD----------SI-----KVPPGSGPRHLAFSPDG---------------------------- 203 (345)
T ss_dssp EEEEEE-TTS-TEEE-EE----------EE-----ECSTTSSEEEEEE-TTS----------------------------
T ss_pred EEEEEEeCCCceEEE-ee----------cc-----ccccCCCCcEEEEcCCc----------------------------
Confidence 9999998764 111 00 00 11111345567887765
Q ss_pred ccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccC-CCCCcceEEcCCC-cEEEEccCCCeEEEE
Q psy11539 406 IRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFK-NTQASASAINSNG-VMFYNLVTKHSVGCW 483 (530)
Q Consensus 406 ~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~-~sqs~G~aiD~~G-~LYft~~~~~aI~cW 483 (530)
+.||..---+..+..+.... ....+ .....+..++.... ...+.+++++.+| .||++.-..+.|.+|
T Consensus 204 -----~~~Yv~~e~s~~v~v~~~~~-~~g~~-----~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 204 -----KYAYVVNELSNTVSVFDYDP-SDGSL-----TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp -----SEEEEEETTTTEEEEEEEET-TTTEE-----EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred -----CEEEEecCCCCcEEEEeecc-cCCce-----eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 67777766666676664331 01111 11112222222110 1257888999776 589999999999999
Q ss_pred eCC--CCccccCceeEEeecCCceeecceeEEecCCc-EEEE
Q psy11539 484 NTK--TKVYLPQTQDIVQTSRDILNFREEGEEEEEKE-NTCT 522 (530)
Q Consensus 484 nt~--~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~-lYv~ 522 (530)
+.+ ++. ...+..-+..-.+|-+|.++.+|. |||.
T Consensus 273 ~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 273 DLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp EECTTTTT-----EEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred EEecCCCc-----eEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 974 122 233332222356899999988885 5554
No 16
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.73 E-value=0.017 Score=61.54 Aligned_cols=128 Identities=13% Similarity=0.006 Sum_probs=79.5
Q ss_pred CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeC-CCcEEEEeCCCCCcccCcc
Q psy11539 190 RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDK-CDRLWIMDTGVTNILSSIQ 268 (530)
Q Consensus 190 ~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~-cgRLWVLDtG~~~~~~~~~ 268 (530)
..|+||+=+.+.... .++..|+..+.. .+.-.|- + ....++ +.+ ...|+|.-+...-. ..
T Consensus 12 ~~~v~V~d~~~~~~~-~~v~ViD~~~~~---v~g~i~~--------G---~~P~~~-~spDg~~lyva~~~~~R~---~~ 72 (352)
T TIGR02658 12 ARRVYVLDPGHFAAT-TQVYTIDGEAGR---VLGMTDG--------G---FLPNPV-VASDGSFFAHASTVYSRI---AR 72 (352)
T ss_pred CCEEEEECCcccccC-ceEEEEECCCCE---EEEEEEc--------c---CCCcee-ECCCCCEEEEEecccccc---cc
Confidence 478999987754444 688888865321 1211111 0 011112 333 44688998842111 01
Q ss_pred ccCCCEEEEEECCCCcEEEEEECCCc-ccccCccccceEEEeecCCCCeEEEEecCC-CCeEEEEEccCCeEEE
Q psy11539 269 QLCPPKIMVFDLKTNTLIRKYILPTA-QVFEGSLFSNIVTEVVEDCDHVFAYVNDVF-RYGLIVYDFFKNTSYR 340 (530)
Q Consensus 269 ~~c~PKLvvfDL~Td~li~~y~~P~~-v~~~~S~lndIvVDv~~~c~~~~AYItDsg-~~gLIVyDl~~g~swR 340 (530)
-...-.|-+||++|.++++++.+|+. -..-......+++. .++.++||++.. ...+-|+|+.+++.-+
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls----~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT----PDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC----CCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 12235699999999999999999865 11113334456665 367899999976 8999999999996655
No 17
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.52 E-value=0.0025 Score=65.78 Aligned_cols=230 Identities=17% Similarity=0.283 Sum_probs=131.6
Q ss_pred cCCCceeeeEEe-CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEE
Q psy11539 178 PENNLPLGIGIW-RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIM 256 (530)
Q Consensus 178 p~n~iP~GV~v~-~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVL 256 (530)
|...-|..|+.. +|.+..+- .|. -.++.++..++ ..+-||-=+ =-+.++|.++++|-+||+
T Consensus 59 p~G~ap~dvapapdG~VWft~----qg~-gaiGhLdP~tG----ev~~ypLg~---------Ga~Phgiv~gpdg~~Wit 120 (353)
T COG4257 59 PNGSAPFDVAPAPDGAVWFTA----QGT-GAIGHLDPATG----EVETYPLGS---------GASPHGIVVGPDGSAWIT 120 (353)
T ss_pred CCCCCccccccCCCCceEEec----Ccc-ccceecCCCCC----ceEEEecCC---------CCCCceEEECCCCCeeEe
Confidence 445567777776 67777763 221 25666765432 344455311 257889999999999999
Q ss_pred eCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCC-CCeEEEEEccC
Q psy11539 257 DTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF-RYGLIVYDFFK 335 (530)
Q Consensus 257 DtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg-~~gLIVyDl~~ 335 (530)
|+|. . |..+|.||..+ .++.+|.+. ....|+..++| +.+.+++|-.. .+| .+|..+
T Consensus 121 d~~~-a------------I~R~dpkt~ev-t~f~lp~~~--a~~nlet~vfD-----~~G~lWFt~q~G~yG--rLdPa~ 177 (353)
T COG4257 121 DTGL-A------------IGRLDPKTLEV-TRFPLPLEH--ADANLETAVFD-----PWGNLWFTGQIGAYG--RLDPAR 177 (353)
T ss_pred cCcc-e------------eEEecCcccce-EEeeccccc--CCCcccceeeC-----CCccEEEeeccccce--ecCccc
Confidence 9996 3 99999998766 579998764 34568999999 78888888653 334 333333
Q ss_pred CeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCccccc-cc------ccccCCccccccc--
Q psy11539 336 NTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYH-YN------VHHYNGTNVDKTI-- 406 (530)
Q Consensus 336 g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~-~~------~~~~~~~~~~~~~-- 406 (530)
+..- .+|.|. + -|..||...|+++ -+|. |. +...+++--.+.+
T Consensus 178 ~~i~------vfpaPq-G------------~gpyGi~atpdGs---------vwyaslagnaiaridp~~~~aev~p~P~ 229 (353)
T COG4257 178 NVIS------VFPAPQ-G------------GGPYGICATPDGS---------VWYASLAGNAIARIDPFAGHAEVVPQPN 229 (353)
T ss_pred Ccee------eeccCC-C------------CCCcceEECCCCc---------EEEEeccccceEEcccccCCcceecCCC
Confidence 3111 112221 0 1445666666651 1121 00 0001111111111
Q ss_pred ----------cCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccC
Q psy11539 407 ----------RDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVT 476 (530)
Q Consensus 407 ----------~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~ 476 (530)
++-.+.+..+--....+++++-+.- .-.+..+-|.+ ..+..|-+|+.|.+++.+..
T Consensus 230 ~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~-----------sW~eypLPgs~---arpys~rVD~~grVW~sea~ 295 (353)
T COG4257 230 ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT-----------SWIEYPLPGSK---ARPYSMRVDRHGRVWLSEAD 295 (353)
T ss_pred cccccccccccCccCcEEEeccCCceeeEeCcccc-----------cceeeeCCCCC---CCcceeeeccCCcEEeeccc
Confidence 1122233333333333444432211 11223333432 46889999999999999999
Q ss_pred CCeEEEEeCCCCcc
Q psy11539 477 KHSVGCWNTKTKVY 490 (530)
Q Consensus 477 ~~aI~cWnt~~~~~ 490 (530)
.++|.++|+.+-.|
T Consensus 296 agai~rfdpeta~f 309 (353)
T COG4257 296 AGAIGRFDPETARF 309 (353)
T ss_pred cCceeecCcccceE
Confidence 99999999984333
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.051 Score=57.83 Aligned_cols=231 Identities=12% Similarity=0.101 Sum_probs=141.3
Q ss_pred ceeeeEEe--CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCC-cEEEEeC
Q psy11539 182 LPLGIGIW--RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCD-RLWIMDT 258 (530)
Q Consensus 182 iP~GV~v~--~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cg-RLWVLDt 258 (530)
.|.|+.+. ...++++.---. ++..+... .+ ...+.+. .++....++.++..+ +++|.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~-----~~~~~~~~-~n---~~~~~~~---------~g~~~p~~i~v~~~~~~vyv~~~ 93 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSN-----DVSVIDAT-SN---TVTQSLS---------VGGVYPAGVAVNPAGNKVYVTTG 93 (381)
T ss_pred CCceeEEcCccCEEEEEeecCc-----eeeecccc-cc---eeeeecc---------CCCccccceeeCCCCCeEEEecC
Confidence 78888885 448888852211 44444432 22 1111110 112445566665544 5888876
Q ss_pred CCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCC--CCeEEEEEccCC
Q psy11539 259 GVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF--RYGLIVYDFFKN 336 (530)
Q Consensus 259 G~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg--~~gLIVyDl~~g 336 (530)
.. ..+.++|+++.++++.+.+.. ....+++|. ++.++|++|.+ ..-+.|+|..++
T Consensus 94 ~~------------~~v~vid~~~~~~~~~~~vG~-------~P~~~~~~~----~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 94 DS------------NTVSVIDTATNTVLGSIPVGL-------GPVGLAVDP----DGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred CC------------CeEEEEcCcccceeeEeeecc-------CCceEEECC----CCCEEEEEecccCCceEEEEeCCCC
Confidence 63 349999999999998887744 567889983 57799999995 678888888888
Q ss_pred eEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEE
Q psy11539 337 TSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFH 416 (530)
Q Consensus 337 ~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~ 416 (530)
+.-+. ..++. .. .|+|++|++ ..+|-.
T Consensus 151 ~~~~~-------------~~vG~------~P-~~~a~~p~g---------------------------------~~vyv~ 177 (381)
T COG3391 151 KVTAT-------------IPVGN------TP-TGVAVDPDG---------------------------------NKVYVT 177 (381)
T ss_pred eEEEE-------------EecCC------Cc-ceEEECCCC---------------------------------CeEEEE
Confidence 44432 11111 11 588999886 667777
Q ss_pred eCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCc-EEEEccCC--CeEEEEeCCCCccccC
Q psy11539 417 SMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGV-MFYNLVTK--HSVGCWNTKTKVYLPQ 493 (530)
Q Consensus 417 plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~-LYft~~~~--~aI~cWnt~~~~~~~~ 493 (530)
.-.+..++.++++...-.. ...-..++ ....+.++++|.+|. +|+..-.. +.|...|..++..
T Consensus 178 ~~~~~~v~vi~~~~~~v~~--------~~~~~~~~---~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v--- 243 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVR--------GSVGSLVG---VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV--- 243 (381)
T ss_pred ecCCCeEEEEeCCCcceec--------cccccccc---cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE---
Confidence 7667777777633221110 00000111 113578899998888 77777666 5999999982211
Q ss_pred ceeEEeecCCceeecceeEEecCCcEEEEE
Q psy11539 494 TQDIVQTSRDILNFREEGEEEEEKENTCTF 523 (530)
Q Consensus 494 n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~ 523 (530)
+... ..-+.+ +|.++.++.+|..+.++
T Consensus 244 -~~~~-~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 244 -TATD-LPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred -EEec-cccccC-CCCceeECCCCCEEEEE
Confidence 1111 123467 89999998888555544
No 19
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.23 E-value=0.015 Score=61.25 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=51.4
Q ss_pred CceEEEEEEEeCCCcEEEEeCCCCCcccCccccCC-CEEEEEECCC--CcEEEEEECCCcccccCccccceEEEeecCCC
Q psy11539 238 SLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCP-PKIMVFDLKT--NTLIRKYILPTAQVFEGSLFSNIVTEVVEDCD 314 (530)
Q Consensus 238 ~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~-PKLvvfDL~T--d~li~~y~~P~~v~~~~S~lndIvVDv~~~c~ 314 (530)
.|.++..|.+|++|||||++...--. ....+... -+|++++-.+ |+..+...|-+. ......|++. .
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~-~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~-----~ 81 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSR-PAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVA-----V 81 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCC-CCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEe-----c
Confidence 47889999999999999999843111 11111122 2899998754 355444455332 2455778886 4
Q ss_pred CeEEEEecCCCCeEEEEE
Q psy11539 315 HVFAYVNDVFRYGLIVYD 332 (530)
Q Consensus 315 ~~~AYItDsg~~gLIVyD 332 (530)
++ +||++. +.|+.|.
T Consensus 82 ~G-lyV~~~--~~i~~~~ 96 (367)
T TIGR02604 82 GG-VYVATP--PDILFLR 96 (367)
T ss_pred CC-EEEeCC--CeEEEEe
Confidence 56 999874 3466563
No 20
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.21 E-value=0.14 Score=49.56 Aligned_cols=159 Identities=11% Similarity=0.077 Sum_probs=86.4
Q ss_pred EEEEeCCCc-EEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEec
Q psy11539 244 RMSVDKCDR-LWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVND 322 (530)
Q Consensus 244 rv~ID~cgR-LWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItD 322 (530)
.+.++..++ |++.... ..+|.+||+.+.+++.++.... ....++++ -++.+++++.
T Consensus 77 ~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~----~dg~~l~~~~ 133 (300)
T TIGR03866 77 LFALHPNGKILYIANED------------DNLVTVIDIETRKVLAEIPVGV-------EPEGMAVS----PDGKIVVNTS 133 (300)
T ss_pred EEEECCCCCEEEEEcCC------------CCeEEEEECCCCeEEeEeeCCC-------CcceEEEC----CCCCEEEEEe
Confidence 456677766 5554321 1359999999988887765422 13456665 2455666665
Q ss_pred CCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccc
Q psy11539 323 VFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNV 402 (530)
Q Consensus 323 sg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~ 402 (530)
.....+++||.++++..+..- .. ....++++++++
T Consensus 134 ~~~~~~~~~d~~~~~~~~~~~-------------~~-------~~~~~~~~s~dg------------------------- 168 (300)
T TIGR03866 134 ETTNMAHFIDTKTYEIVDNVL-------------VD-------QRPRFAEFTADG------------------------- 168 (300)
T ss_pred cCCCeEEEEeCCCCeEEEEEE-------------cC-------CCccEEEECCCC-------------------------
Confidence 555567788988765432110 00 012346666664
Q ss_pred cccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcE-EEEccCCCeEE
Q psy11539 403 DKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVM-FYNLVTKHSVG 481 (530)
Q Consensus 403 ~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~L-Yft~~~~~aI~ 481 (530)
++||+..-.+.+++.++.+-.+- . ..+ .++.-+......++.+++++.+|.. |++....+.|.
T Consensus 169 --------~~l~~~~~~~~~v~i~d~~~~~~--~----~~~--~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 169 --------KELWVSSEIGGTVSVIDVATRKV--I----KKI--TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred --------CEEEEEcCCCCEEEEEEcCccee--e----eee--eecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 66766644444555554332110 0 000 0000010001124567888877765 77766778899
Q ss_pred EEeCC
Q psy11539 482 CWNTK 486 (530)
Q Consensus 482 cWnt~ 486 (530)
+||..
T Consensus 233 v~d~~ 237 (300)
T TIGR03866 233 VVDAK 237 (300)
T ss_pred EEECC
Confidence 99987
No 21
>KOG1520|consensus
Probab=97.15 E-value=0.018 Score=61.48 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=47.1
Q ss_pred EEEEEEEeCCC-cEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCc-ccccCccccceEEEeecCCCCeEE
Q psy11539 241 SVFRMSVDKCD-RLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTA-QVFEGSLFSNIVTEVVEDCDHVFA 318 (530)
Q Consensus 241 SV~rv~ID~cg-RLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~-v~~~~S~lndIvVDv~~~c~~~~A 318 (530)
.+.+++.|..+ .|+|.|.=. | |++.+...++.. .+..+ .-++-.|+|++.|| .++.+
T Consensus 116 RPLGl~f~~~ggdL~VaDAYl----G---------L~~V~p~g~~a~---~l~~~~~G~~~kf~N~ldI~-----~~g~v 174 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYL----G---------LLKVGPEGGLAE---LLADEAEGKPFKFLNDLDID-----PEGVV 174 (376)
T ss_pred CcceEEeccCCCeEEEEecce----e---------eEEECCCCCcce---eccccccCeeeeecCceeEc-----CCCeE
Confidence 57899999987 999999743 2 899999776521 12122 22345789999999 58999
Q ss_pred EEecCCC
Q psy11539 319 YVNDVFR 325 (530)
Q Consensus 319 YItDsg~ 325 (530)
|+||+..
T Consensus 175 yFTDSSs 181 (376)
T KOG1520|consen 175 YFTDSSS 181 (376)
T ss_pred EEecccc
Confidence 9999963
No 22
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.041 Score=58.22 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=66.7
Q ss_pred EEEEEEeCCC-cEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEE
Q psy11539 242 VFRMSVDKCD-RLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYV 320 (530)
Q Consensus 242 V~rv~ID~cg-RLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYI 320 (530)
+.-..++..+ .||++|-|. =||.+||+..|++...... .+++++....|++. .++.+||+
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~~~---~v~~G~GPRHi~FH----pn~k~aY~ 207 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPADPA---EVKPGAGPRHIVFH----PNGKYAYL 207 (346)
T ss_pred cceeeeCCCCCEEEEeecCC------------ceEEEEEcccCcccccccc---ccCCCCCcceEEEc----CCCcEEEE
Confidence 5566777777 688888886 3589999987776543332 34788999999998 36889999
Q ss_pred ecCCCCeEEEEEccC--CeEEEEcCCCCCcC
Q psy11539 321 NDVFRYGLIVYDFFK--NTSYRLTHPYMYPE 349 (530)
Q Consensus 321 tDsg~~gLIVyDl~~--g~swRv~h~sf~pd 349 (530)
.-.-...|+||.... |+.-++.--.+.|+
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 999999999998887 66666654444444
No 23
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.89 E-value=0.13 Score=54.93 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=77.4
Q ss_pred CcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-------
Q psy11539 251 DRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV------- 323 (530)
Q Consensus 251 gRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs------- 323 (530)
.|+||.|.+.... .-+|.++|..+++++.++.... +...+ +- .++.++||+.+
T Consensus 13 ~~v~V~d~~~~~~--------~~~v~ViD~~~~~v~g~i~~G~-------~P~~~-~s----pDg~~lyva~~~~~R~~~ 72 (352)
T TIGR02658 13 RRVYVLDPGHFAA--------TTQVYTIDGEAGRVLGMTDGGF-------LPNPV-VA----SDGSFFAHASTVYSRIAR 72 (352)
T ss_pred CEEEEECCccccc--------CceEEEEECCCCEEEEEEEccC-------CCcee-EC----CCCCEEEEEecccccccc
Confidence 4799999985321 1459999999999999888743 22322 32 26889999999
Q ss_pred --CCCeEEEEEccCCeEEEEc-CCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCc
Q psy11539 324 --FRYGLIVYDFFKNTSYRLT-HPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGT 400 (530)
Q Consensus 324 --g~~gLIVyDl~~g~swRv~-h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~ 400 (530)
....|-|||.++.+.-+=. .+ ++|.+.. ......++|||++
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p---~~p~~~~----------~~~~~~~~ls~dg----------------------- 116 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELP---EGPRFLV----------GTYPWMTSLTPDN----------------------- 116 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccC---CCchhhc----------cCccceEEECCCC-----------------------
Confidence 7889999999999665422 21 2222210 0011246777765
Q ss_pred cccccccCCCceEEEEeCC-CCeeEEEecch
Q psy11539 401 NVDKTIRDDQRYMYFHSMS-SNRHYYVSTTD 430 (530)
Q Consensus 401 ~~~~~~~~~~r~LYf~pls-S~~lY~V~T~~ 430 (530)
++||..-++ ...+-.|+++.
T Consensus 117 ----------k~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 117 ----------KTLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred ----------CEEEEecCCCCCEEEEEECCC
Confidence 999998888 77777777544
No 24
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.14 Score=54.57 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=127.0
Q ss_pred CceeeeEEe--CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCC-cEEEEe
Q psy11539 181 NLPLGIGIW--RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCD-RLWIMD 257 (530)
Q Consensus 181 ~iP~GV~v~--~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cg-RLWVLD 257 (530)
..|.|+++. ..|+|++--+ . -++..|+..... .+..-+ +. ..++++.+|..+ .+||.|
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~--~---~~v~vid~~~~~---~~~~~~---------vG--~~P~~~~~~~~~~~vYV~n 134 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGD--S---NTVSVIDTATNT---VLGSIP---------VG--LGPVGLAVDPDGKYVYVAN 134 (381)
T ss_pred ccccceeeCCCCCeEEEecCC--C---CeEEEEcCcccc---eeeEee---------ec--cCCceEEECCCCCEEEEEe
Confidence 778999995 6889999643 1 145555532111 111111 11 178899999977 999999
Q ss_pred CCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCe
Q psy11539 258 TGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT 337 (530)
Q Consensus 258 tG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~ 337 (530)
.|.- .-.+.++|-.+++++++..-.. ..-.+++| .++.++|++|.....|.++|..+..
T Consensus 135 ~~~~----------~~~vsvid~~t~~~~~~~~vG~-------~P~~~a~~----p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 135 AGNG----------NNTVSVIDAATNKVTATIPVGN-------TPTGVAVD----PDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred cccC----------CceEEEEeCCCCeEEEEEecCC-------CcceEEEC----CCCCeEEEEecCCCeEEEEeCCCcc
Confidence 9851 1459999999999999833321 12677887 3678999999999999999999998
Q ss_pred EEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEe
Q psy11539 338 SYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHS 417 (530)
Q Consensus 338 swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~p 417 (530)
.|| .+.. ..+ ....+..++++++++ ..+|-.-
T Consensus 194 v~~-~~~~-------~~~-------~~~~~P~~i~v~~~g---------------------------------~~~yV~~ 225 (381)
T COG3391 194 VVR-GSVG-------SLV-------GVGTGPAGIAVDPDG---------------------------------NRVYVAN 225 (381)
T ss_pred eec-cccc-------ccc-------ccCCCCceEEECCCC---------------------------------CEEEEEe
Confidence 887 4321 011 111244578888876 4455544
Q ss_pred CCC--CeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEc-cCCCeEEEEeCC
Q psy11539 418 MSS--NRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNL-VTKHSVGCWNTK 486 (530)
Q Consensus 418 lsS--~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~-~~~~aI~cWnt~ 486 (530)
..+ .+++.+++...... ......+.. ++.+++.+..|..+|.+ ...+.+...|..
T Consensus 226 ~~~~~~~v~~id~~~~~v~-------------~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 226 DGSGSNNVLKIDTATGNVT-------------ATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred ccCCCceEEEEeCCCceEE-------------EeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 444 45666654332111 110112223 57778888665555554 555778877776
No 25
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.53 E-value=0.097 Score=55.77 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=94.7
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCc
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQ 352 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~ 352 (530)
-+|.++|.+|.++++++....+. ...+.+- .++.++|++. ..+.|-|+|+.+++.-+
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~------h~~~~~s----~Dgr~~yv~~-rdg~vsviD~~~~~~v~------------ 72 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAP------HAGLKFS----PDGRYLYVAN-RDGTVSVIDLATGKVVA------------ 72 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTE------EEEEE-T----T-SSEEEEEE-TTSEEEEEETTSSSEEE------------
T ss_pred CEEEEEECCCCeEEEEEcCCCCc------eeEEEec----CCCCEEEEEc-CCCeEEEEECCcccEEE------------
Confidence 34889999999999988874331 1222221 3578999996 45789999999996432
Q ss_pred ceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhc
Q psy11539 353 STYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLR 432 (530)
Q Consensus 353 ~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lr 432 (530)
.+.+++ +..|||+|+++ ++||-+-..+..+-.++++-|+
T Consensus 73 -~i~~G~-------~~~~i~~s~DG---------------------------------~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 73 -TIKVGG-------NPRGIAVSPDG---------------------------------KYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp -EEE-SS-------EEEEEEE--TT---------------------------------TEEEEEEEETTEEEEEETTT--
T ss_pred -EEecCC-------CcceEEEcCCC---------------------------------CEEEEEecCCCceeEecccccc
Confidence 222222 23488999886 8888877777777777766553
Q ss_pred CccccCCccccccceEEec--cccCCCCCcceEEcCCCcEE-EEccCCCeEEEEeCCCCccccCceeEEeecCCceeecc
Q psy11539 433 NSSRYVNSSDIDEYFHYLG--SRFKNTQASASAINSNGVMF-YNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFRE 509 (530)
Q Consensus 433 n~s~~~~~~~~~~~v~~lG--~rG~~sqs~G~aiD~~G~LY-ft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd 509 (530)
--. .+..-+ ..+..+...|+.....+..| ++.-+.+.|+.-|.. .. .+..+-.. +.=.+|.
T Consensus 112 ~v~----------~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~-d~---~~~~~~~i--~~g~~~~ 175 (369)
T PF02239_consen 112 PVK----------TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS-DP---KNLKVTTI--KVGRFPH 175 (369)
T ss_dssp EEE----------EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT-TS---SCEEEEEE--E--TTEE
T ss_pred cee----------ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec-cc---cccceeee--ccccccc
Confidence 211 111111 11112233445444444544 556677899998976 33 12222111 1234788
Q ss_pred eeEEecCCcEEEEE
Q psy11539 510 EGEEEEEKENTCTF 523 (530)
Q Consensus 510 ~l~Id~dG~lYv~~ 523 (530)
+..++.+|.-++.+
T Consensus 176 D~~~dpdgry~~va 189 (369)
T PF02239_consen 176 DGGFDPDGRYFLVA 189 (369)
T ss_dssp EEEE-TTSSEEEEE
T ss_pred ccccCcccceeeec
Confidence 99999998655554
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.30 E-value=0.89 Score=41.85 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=103.0
Q ss_pred EEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEE
Q psy11539 241 SVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYV 320 (530)
Q Consensus 241 SV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYI 320 (530)
.+..+...+.+++.+..... ..|.+||+.+++.+..+.-. ...+..+.++ .++.+++.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~----~~~~~l~~ 152 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD------------KTIKVWDVETGKCLTTLRGH------TDWVNSVAFS----PDGTFVAS 152 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC------------CeEEEEECCCcEEEEEeccC------CCcEEEEEEc----CcCCEEEE
Confidence 45556666666666665411 34999999988887766521 2335566665 12456655
Q ss_pred ecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCc
Q psy11539 321 NDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGT 400 (530)
Q Consensus 321 tDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~ 400 (530)
.. ....|.+||+++++..+.... . ...+..|++++++
T Consensus 153 ~~-~~~~i~i~d~~~~~~~~~~~~-------------~------~~~i~~~~~~~~~----------------------- 189 (289)
T cd00200 153 SS-QDGTIKLWDLRTGKCVATLTG-------------H------TGEVNSVAFSPDG----------------------- 189 (289)
T ss_pred Ec-CCCcEEEEEccccccceeEec-------------C------ccccceEEECCCc-----------------------
Confidence 54 345799999986644332210 0 0134456666654
Q ss_pred cccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEe-ccccCCCCCcceEEcCCCcEEEEccCCCe
Q psy11539 401 NVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYL-GSRFKNTQASASAINSNGVMFYNLVTKHS 479 (530)
Q Consensus 401 ~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~l-G~rG~~sqs~G~aiD~~G~LYft~~~~~a 479 (530)
+.|++... ...+...+... .. .+..+ +.. .....+.++.++.++++....+.
T Consensus 190 ----------~~l~~~~~-~~~i~i~d~~~---~~----------~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 190 ----------EKLLSSSS-DGTIKLWDLST---GK----------CLGTLRGHE---NGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred ----------CEEEEecC-CCcEEEEECCC---Cc----------eecchhhcC---CceEEEEEcCCCcEEEEEcCCCc
Confidence 34444443 22233333211 00 11111 211 23556777777888888877889
Q ss_pred EEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEeecee
Q psy11539 480 VGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLVNKY 528 (530)
Q Consensus 480 I~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~snr~ 528 (530)
|..|+..++. ....+.. .-....++.+..+|...+++..+..
T Consensus 243 i~i~~~~~~~----~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 243 IRVWDLRTGE----CVQTLSG---HTNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred EEEEEcCCce----eEEEccc---cCCcEEEEEECCCCCEEEEecCCCe
Confidence 9999987211 1112211 1123556777777766666665544
No 27
>KOG4659|consensus
Probab=96.24 E-value=0.08 Score=63.63 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=62.7
Q ss_pred ceEEEEeCCCCeeEEEecchhcCccccC----Ccccc-ccceEEeccccCC-----CCCcceEEcCCCcEEEEccCCCeE
Q psy11539 411 RYMYFHSMSSNRHYYVSTTDLRNSSRYV----NSSDI-DEYFHYLGSRFKN-----TQASASAINSNGVMFYNLVTKHSV 480 (530)
Q Consensus 411 r~LYf~plsS~~lY~V~T~~Lrn~s~~~----~~~~~-~~~v~~lG~rG~~-----sqs~G~aiD~~G~LYft~~~~~aI 480 (530)
.+||.+-.-|.++|+|+.-.=++....- -+++. ....+.-|+-|.. ..+.|+++|+.|+|||+|.. .|
T Consensus 419 gtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t--~I 496 (1899)
T KOG4659|consen 419 GTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT--RI 496 (1899)
T ss_pred ceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc--EE
Confidence 7899999999999999743222221100 00010 1112223332211 23899999999999999865 46
Q ss_pred EEEeCCCCccc------cCceeEE------eecCCceeecceeEEec-CCcEEEE
Q psy11539 481 GCWNTKTKVYL------PQTQDIV------QTSRDILNFREEGEEEE-EKENTCT 522 (530)
Q Consensus 481 ~cWnt~~~~~~------~~n~~lV------~~d~~~L~~Pd~l~Id~-dG~lYv~ 522 (530)
...|.+ +-.. +..+..+ ..-+-+|.||++++|+. |+-|||.
T Consensus 497 R~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vl 550 (1899)
T KOG4659|consen 497 RVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVL 550 (1899)
T ss_pred EEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEe
Confidence 666665 4221 0001111 11123799999999987 5667774
No 28
>KOG1214|consensus
Probab=95.95 E-value=0.05 Score=62.87 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=47.1
Q ss_pred CCCcceEEc-CCCcEEEEccCC--CeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEe
Q psy11539 457 TQASASAIN-SNGVMFYNLVTK--HSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFL 524 (530)
Q Consensus 457 sqs~G~aiD-~~G~LYft~~~~--~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~ 524 (530)
-.+.++++| =.|+||++|-.+ -.|..-+.+ + +|-+++..+ .+-.|+||.||....+-+|+=
T Consensus 1111 VNPR~iv~D~~rgnLYwtDWnRenPkIets~mD-G----~NrRilin~--DigLPNGLtfdpfs~~LCWvD 1174 (1289)
T KOG1214|consen 1111 VNPRAIVVDPIRGNLYWTDWNRENPKIETSSMD-G----ENRRILINT--DIGLPNGLTFDPFSKLLCWVD 1174 (1289)
T ss_pred cCcceEEeecccCceeeccccccCCcceeeccC-C----ccceEEeec--ccCCCCCceeCcccceeeEEe
Confidence 368899999 789999998643 456655555 3 477777753 588999999999999988874
No 29
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=0.84 Score=47.86 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=104.5
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCC
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEP 350 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP 350 (530)
.||.||-.++ +|+++++++++. + +=+-.|..= .++..=|+|-....|+++.+..++.--....
T Consensus 106 ~p~~iVElt~-~GdlirtiPL~g-~----~DpE~Ieyi-----g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~------ 168 (316)
T COG3204 106 KPAAIVELTK-EGDLIRTIPLTG-F----SDPETIEYI-----GGNQFVIVDERDRALYLFTVDADTTVISAKV------ 168 (316)
T ss_pred CCceEEEEec-CCceEEEecccc-c----CChhHeEEe-----cCCEEEEEehhcceEEEEEEcCCccEEeccc------
Confidence 5688999998 889999999954 1 111222221 2334446777777777777776632211110
Q ss_pred CcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEE-eCCCCeeEEEecc
Q psy11539 351 TQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFH-SMSSNRHYYVSTT 429 (530)
Q Consensus 351 ~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~-plsS~~lY~V~T~ 429 (530)
..+..+... .-.-|.-|+|-+|.. +.|||. --.-.++|.+.-+
T Consensus 169 --~~i~L~~~~-k~N~GfEGlA~d~~~---------------------------------~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 169 --QKIPLGTTN-KKNKGFEGLAWDPVD---------------------------------HRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred --eEEeccccC-CCCcCceeeecCCCC---------------------------------ceEEEEEccCCcEEEEEecC
Confidence 011111100 013467788888864 344432 2222346666511
Q ss_pred hhcCccccCC-ccccccceEEeccccCCCCCcceEEc-CCCcEEEEccCCCeEEEEeCCCCccccCceeEEeec---CCc
Q psy11539 430 DLRNSSRYVN-SSDIDEYFHYLGSRFKNTQASASAIN-SNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTS---RDI 504 (530)
Q Consensus 430 ~Lrn~s~~~~-~~~~~~~v~~lG~rG~~sqs~G~aiD-~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d---~~~ 504 (530)
. +.-+.... .......+. -..-+|+.+| .+|.|++=.-+...+.-.|.. +.- .+-..+...+ ...
T Consensus 213 ~-~~l~~~~~~~~~~~~~~f-------~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~-~~~lsL~~g~~gL~~d 282 (316)
T COG3204 213 P-SSLSVHASLDPTADRDLF-------VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEV-IELLSLTKGNHGLSSD 282 (316)
T ss_pred C-cccccccccCcccccceE-------eeccccceecCCCCcEEEEecCCceEEEEecC-CCe-eeeEEeccCCCCCccc
Confidence 1 00000000 000001111 1246788898 677887776677788888887 542 1111111111 124
Q ss_pred eeecceeEEecCCcEEEEEeecee
Q psy11539 505 LNFREEGEEEEEKENTCTFLVNKY 528 (530)
Q Consensus 505 L~~Pd~l~Id~dG~lYv~~~snr~ 528 (530)
+.=+.|+++|.+|.|||+.=.|.|
T Consensus 283 ipqaEGiamDd~g~lYIvSEPnlf 306 (316)
T COG3204 283 IPQAEGIAMDDDGNLYIVSEPNLF 306 (316)
T ss_pred CCCcceeEECCCCCEEEEecCCcc
Confidence 677999999999999998877754
No 30
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.90 E-value=1.2 Score=47.56 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=89.7
Q ss_pred CCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCccccccc
Q psy11539 314 DHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYN 393 (530)
Q Consensus 314 ~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~ 393 (530)
++.|+.+.|.|...|.+|++..|+.-...-..+ .|.+ |.-.|+++|. .-|.|-
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~--------------GPRHi~FHpn-----------~k~aY~ 207 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGA--------------GPRHIVFHPN-----------GKYAYL 207 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCcccccccccc--CCCC--------------CcceEEEcCC-----------CcEEEE
Confidence 467999999999999999999987665543333 1221 3345666554 355565
Q ss_pred ccccCCccccccccCCCceEEEEeCCCCeeEEEecc--hhcCccccCCccccccceEEeccccCCCCCcceEEcCCCc-E
Q psy11539 394 VHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTT--DLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGV-M 470 (530)
Q Consensus 394 ~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~--~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~-L 470 (530)
+++.+++ . ..|..+.. .|+.-+. ...+... ..|++ .+..+.++.+|. |
T Consensus 208 v~EL~st-----------V---------~v~~y~~~~g~~~~lQ~---i~tlP~d--F~g~~----~~aaIhis~dGrFL 258 (346)
T COG2706 208 VNELNST-----------V---------DVLEYNPAVGKFEELQT---IDTLPED--FTGTN----WAAAIHISPDGRFL 258 (346)
T ss_pred EeccCCE-----------E---------EEEEEcCCCceEEEeee---eccCccc--cCCCC----ceeEEEECCCCCEE
Confidence 5543322 0 12222221 0100000 0011111 22433 367778887765 7
Q ss_pred EEEccCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEE
Q psy11539 471 FYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTF 523 (530)
Q Consensus 471 Yft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~ 523 (530)
|.+.-.+++|.+|..+ +-.. -.+++..-+..-+||-++.++..|.+-+.+
T Consensus 259 YasNRg~dsI~~f~V~--~~~g-~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 259 YASNRGHDSIAVFSVD--PDGG-KLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EEecCCCCeEEEEEEc--CCCC-EEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 8889999999998776 2111 255666667789999999999888665543
No 31
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.88 E-value=0.033 Score=59.06 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCCcEEEE-eCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCe
Q psy11539 249 KCDRLWIM-DTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYG 327 (530)
Q Consensus 249 ~cgRLWVL-DtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~g 327 (530)
+.+||+|| +.|... ......-.|++||++|++.++|++++.. ...|.|- . -+.-.+|..+.+...
T Consensus 248 ~~~rlyvLMh~g~~g----sHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vs--q-d~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEG----SHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVS--Q-DDKPLLYALSAGDGT 313 (342)
T ss_dssp TTTEEEEEEEE--TT-----TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEE--S-SSS-EEEEEETTTTE
T ss_pred ccCeEEEEecCCCCC----CccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEc--c-CCCcEEEEEcCCCCe
Confidence 58899998 766432 2445667899999999999999999543 2356664 2 256799999998899
Q ss_pred EEEEEccCCeEEEEc
Q psy11539 328 LIVYDFFKNTSYRLT 342 (530)
Q Consensus 328 LIVyDl~~g~swRv~ 342 (530)
|.|||..+|+.-|..
T Consensus 314 l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 314 LDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEETTT--EEEEE
T ss_pred EEEEeCcCCcEEeeh
Confidence 999999999887755
No 32
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.77 E-value=0.73 Score=46.93 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=61.2
Q ss_pred eeeeEEe--CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEEeCCC
Q psy11539 183 PLGIGIW--RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGV 260 (530)
Q Consensus 183 P~GV~v~--~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVLDtG~ 260 (530)
+.|+++. .+++|... +-|..|.+++.+ +. .++-+|-. ++--.-+|..-..|++.+.|-..
T Consensus 24 ~SGLTy~pd~~tLfaV~-----d~~~~i~els~~-G~---vlr~i~l~---------g~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQ-----DEPGEIYELSLD-GK---VLRRIPLD---------GFGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp EEEEEEETTTTEEEEEE-----TTTTEEEEEETT------EEEEEE-S---------S-SSEEEEEE-STTEEEEEETTT
T ss_pred ccccEEcCCCCeEEEEE-----CCCCEEEEEcCC-CC---EEEEEeCC---------CCCCceeEEEECCCEEEEEEcCC
Confidence 7899997 57888874 347789999864 22 45444432 23345556665777777777332
Q ss_pred CCcccCccccCCCEEEEEECCCCc------EEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCC-eEEEEEc
Q psy11539 261 TNILSSIQQLCPPKIMVFDLKTNT------LIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRY-GLIVYDF 333 (530)
Q Consensus 261 ~~~~~~~~~~c~PKLvvfDL~Td~------li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~-gLIVyDl 333 (530)
..|++|++..++ -++.|.+.-. ...+..|-.|+.|. .+...|++--..+ +|+-++.
T Consensus 86 ------------~~L~~~~~~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~----~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 86 ------------QRLYIFTIDDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDP----KTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ------------TEEEEEEE----TT--EEEEEEEE---S----SS--EEEEEET----TTTEEEEEEESSSEEEEEEES
T ss_pred ------------CcEEEEEEeccccccchhhceEEecccc-cCCCcceEEEEEcC----CCCEEEEEeCCCChhhEEEcc
Confidence 247888773321 2344555333 33456788899983 3455566644443 3444443
No 33
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.71 E-value=0.4 Score=54.69 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=53.4
Q ss_pred ccCCCceEEEEeCCCCeeEEEecchhcCc---cccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEE
Q psy11539 406 IRDDQRYMYFHSMSSNRHYYVSTTDLRNS---SRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGC 482 (530)
Q Consensus 406 ~~~~~r~LYf~plsS~~lY~V~T~~Lrn~---s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~c 482 (530)
++.+++++|-.-.-|..+-.|+++-++.- .+ +....+..+++. |. -+...++|.+|+.|.++.-.+.|..
T Consensus 328 vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-~~~~~vvaevev-Gl-----GPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 328 TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-KPRDAVVAEPEL-GL-----GPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-CccceEEEeecc-CC-----CcceEEECCCCCEEEeEeecceeEE
Confidence 34445999999999999999999887641 12 111122223332 43 2667789999999999999999999
Q ss_pred EeCC
Q psy11539 483 WNTK 486 (530)
Q Consensus 483 Wnt~ 486 (530)
||.+
T Consensus 401 wn~~ 404 (635)
T PRK02888 401 WNIE 404 (635)
T ss_pred EehH
Confidence 9988
No 34
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.57 E-value=0.93 Score=46.81 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=49.4
Q ss_pred eeeEEe-CCeEEEEccCCCC--C-----CCcEEEEEECCCCCCCCccC--CCCCCCcCCCCCCCCceEEEEEEEeC----
Q psy11539 184 LGIGIW-RSTIFLSFPKWKA--G-----IPFTLASFNMNDPSESPILL--PYPNWSYFDDSNCNSLISVFRMSVDK---- 249 (530)
Q Consensus 184 ~GV~v~-~gRlFVTiPR~~~--G-----vP~TLa~V~~~~~~~sP~L~--PYPsw~wn~~~nc~~LvSV~rv~ID~---- 249 (530)
.++.+. .|||+|--..... + -|+.|..++..++. .++ ++|.-... ...+ ...++||.
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~---li~~~~~p~~~~~----~~s~--lndl~VD~~~~~ 74 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ---LIRRYPFPPDIAP----PDSF--LNDLVVDVRDGN 74 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC---EEEEEE--CCCS-----TCGG--EEEEEEECTTTT
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc---EEEEEECChHHcc----cccc--cceEEEEccCCC
Confidence 577776 7999997544321 1 15799999987543 333 44432221 1223 34456665
Q ss_pred C--CcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEE
Q psy11539 250 C--DRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIR 287 (530)
Q Consensus 250 c--gRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~ 287 (530)
| +..+|-|+|.. .|+||||++++--|
T Consensus 75 ~~~~~aYItD~~~~------------glIV~dl~~~~s~R 102 (287)
T PF03022_consen 75 CDDGFAYITDSGGP------------GLIVYDLATGKSWR 102 (287)
T ss_dssp S-SEEEEEEETTTC------------EEEEEETTTTEEEE
T ss_pred CcceEEEEeCCCcC------------cEEEEEccCCcEEE
Confidence 5 68999999963 59999999987643
No 35
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=95.54 E-value=0.037 Score=48.05 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=30.4
Q ss_pred cceEEEeecCCCCeEEEEecCC-----------------CCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeec
Q psy11539 303 SNIVTEVVEDCDHVFAYVNDVF-----------------RYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWV 365 (530)
Q Consensus 303 ndIvVDv~~~c~~~~AYItDsg-----------------~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~ 365 (530)
|||.|+ .+++.+|+||+. .+.|+.||+.+++.--+. +|..
T Consensus 1 ndldv~----~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~---------------~~L~---- 57 (89)
T PF03088_consen 1 NDLDVD----QDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL---------------DGLY---- 57 (89)
T ss_dssp -EEEE-----TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE---------------EEES----
T ss_pred CceeEe----cCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh---------------hCCC----
Confidence 467777 234999999994 256999999988554333 2221
Q ss_pred CCccceecCCCc
Q psy11539 366 DGIFGMAISPEL 377 (530)
Q Consensus 366 dGi~GIALsp~~ 377 (530)
-.+||||++++
T Consensus 58 -fpNGVals~d~ 68 (89)
T PF03088_consen 58 -FPNGVALSPDE 68 (89)
T ss_dssp -SEEEEEE-TTS
T ss_pred -ccCeEEEcCCC
Confidence 13699999986
No 36
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.06 E-value=1.3 Score=47.36 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=90.6
Q ss_pred EEEeCCCc-EEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC
Q psy11539 245 MSVDKCDR-LWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV 323 (530)
Q Consensus 245 v~ID~cgR-LWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs 323 (530)
+...++|| +||.. + + -.|-++||.++++++++....+ ..++++. -++.++|+++.
T Consensus 42 ~~~s~Dgr~~yv~~--r-d----------g~vsviD~~~~~~v~~i~~G~~-------~~~i~~s----~DG~~~~v~n~ 97 (369)
T PF02239_consen 42 LKFSPDGRYLYVAN--R-D----------GTVSVIDLATGKVVATIKVGGN-------PRGIAVS----PDGKYVYVANY 97 (369)
T ss_dssp EE-TT-SSEEEEEE--T-T----------SEEEEEETTSSSEEEEEE-SSE-------EEEEEE------TTTEEEEEEE
T ss_pred EEecCCCCEEEEEc--C-C----------CeEEEEECCcccEEEEEecCCC-------cceEEEc----CCCCEEEEEec
Confidence 44556666 77764 2 1 2499999999999999887432 4556665 35789999999
Q ss_pred CCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCcccc
Q psy11539 324 FRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVD 403 (530)
Q Consensus 324 g~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 403 (530)
..+.+.|+|.++.+.-+...- .....++ ....+-+|.-++..
T Consensus 98 ~~~~v~v~D~~tle~v~~I~~--------~~~~~~~----~~~Rv~aIv~s~~~-------------------------- 139 (369)
T PF02239_consen 98 EPGTVSVIDAETLEPVKTIPT--------GGMPVDG----PESRVAAIVASPGR-------------------------- 139 (369)
T ss_dssp ETTEEEEEETTT--EEEEEE----------EE-TTT----S---EEEEEE-SSS--------------------------
T ss_pred CCCceeEeccccccceeeccc--------ccccccc----cCCCceeEEecCCC--------------------------
Confidence 999999999998866553210 0000000 00112244434432
Q ss_pred ccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEE-ccCCCeEEE
Q psy11539 404 KTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYN-LVTKHSVGC 482 (530)
Q Consensus 404 ~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft-~~~~~aI~c 482 (530)
....+.-+-+.+++.|+.+.+++.. ......|+ .+-+..+|.+|..|++ .-..+.|..
T Consensus 140 -------~~fVv~lkd~~~I~vVdy~d~~~~~---------~~~i~~g~-----~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 140 -------PEFVVNLKDTGEIWVVDYSDPKNLK---------VTTIKVGR-----FPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp -------SEEEEEETTTTEEEEEETTTSSCEE---------EEEEE--T-----TEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred -------CEEEEEEccCCeEEEEEeccccccc---------eeeecccc-----cccccccCcccceeeecccccceeEE
Confidence 3445555556678877654442111 01112232 4556788989886655 667889999
Q ss_pred EeCC
Q psy11539 483 WNTK 486 (530)
Q Consensus 483 Wnt~ 486 (530)
+|+.
T Consensus 199 iD~~ 202 (369)
T PF02239_consen 199 IDTK 202 (369)
T ss_dssp EETT
T ss_pred Eeec
Confidence 9988
No 37
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.86 E-value=1.4 Score=48.68 Aligned_cols=86 Identities=12% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccc-cCccccceEEEeec--CC
Q psy11539 237 NSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVF-EGSLFSNIVTEVVE--DC 313 (530)
Q Consensus 237 ~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~-~~S~lndIvVDv~~--~c 313 (530)
++|..+-+|.+..+|||||..-+. -+|++++..+++......+|.-+.. ....|-+|+++..- .-
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~------------G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERAT------------GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecC------------CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccC
Confidence 567888889999999999997421 2377888766554444466543322 35778899998432 02
Q ss_pred CCeEEEEecC---------CCCeEEEEEcc
Q psy11539 314 DHVFAYVNDV---------FRYGLIVYDFF 334 (530)
Q Consensus 314 ~~~~AYItDs---------g~~gLIVyDl~ 334 (530)
.+.++|++=+ ....|+.|.+.
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYD 124 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEec
Confidence 4568888731 13457677665
No 38
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=94.74 E-value=0.11 Score=45.17 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=36.9
Q ss_pred ceEEcCC-CcEEEEccCC-----------------CeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEE
Q psy11539 461 ASAINSN-GVMFYNLVTK-----------------HSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCT 522 (530)
Q Consensus 461 G~aiD~~-G~LYft~~~~-----------------~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~ 522 (530)
+++++++ |.|||++... +++.+||+.|+ ...++.. .|.||+|+++.+|+.--++
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~-----~~~vl~~---~L~fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK-----ETTVLLD---GLYFPNGVALSPDESFVLV 73 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT-----EEEEEEE---EESSEEEEEE-TTSSEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC-----eEEEehh---CCCccCeEEEcCCCCEEEE
Confidence 5778876 9999997632 67999999943 2335543 5999999999999874444
Q ss_pred Ee
Q psy11539 523 FL 524 (530)
Q Consensus 523 ~~ 524 (530)
+=
T Consensus 74 ~E 75 (89)
T PF03088_consen 74 AE 75 (89)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 39
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.20 E-value=5.3 Score=38.04 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=49.5
Q ss_pred EEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCC
Q psy11539 246 SVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFR 325 (530)
Q Consensus 246 ~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~ 325 (530)
.+...++|++.+. ..+|++||.+||+++-++.++..+... ..++ ++.+|+.....
T Consensus 32 ~~~~~~~v~~~~~-------------~~~l~~~d~~tG~~~W~~~~~~~~~~~------~~~~------~~~v~v~~~~~ 86 (238)
T PF13360_consen 32 AVPDGGRVYVASG-------------DGNLYALDAKTGKVLWRFDLPGPISGA------PVVD------GGRVYVGTSDG 86 (238)
T ss_dssp EEEETTEEEEEET-------------TSEEEEEETTTSEEEEEEECSSCGGSG------EEEE------TTEEEEEETTS
T ss_pred EEEeCCEEEEEcC-------------CCEEEEEECCCCCEEEEeeccccccce------eeec------cccccccccee
Confidence 3334778888852 256999999999999999996553222 3554 56778877433
Q ss_pred CeEEEEEccCCe-EEEE
Q psy11539 326 YGLIVYDFFKNT-SYRL 341 (530)
Q Consensus 326 ~gLIVyDl~~g~-swRv 341 (530)
.|+.+|..+|+ .|++
T Consensus 87 -~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 87 -SLYALDAKTGKVLWSI 102 (238)
T ss_dssp -EEEEEETTTSCEEEEE
T ss_pred -eeEecccCCcceeeee
Confidence 89999966665 5875
No 40
>KOG4499|consensus
Probab=94.14 E-value=0.98 Score=46.33 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=46.1
Q ss_pred ceEEEEeCCCCee--EE--EecchhcCccccCCccccccceEEecc-cc-CCCCCcceEEcCCCcEEEEccCCCeEEEEe
Q psy11539 411 RYMYFHSMSSNRH--YY--VSTTDLRNSSRYVNSSDIDEYFHYLGS-RF-KNTQASASAINSNGVMFYNLVTKHSVGCWN 484 (530)
Q Consensus 411 r~LYf~plsS~~l--Y~--V~T~~Lrn~s~~~~~~~~~~~v~~lG~-rG-~~sqs~G~aiD~~G~LYft~~~~~aI~cWn 484 (530)
+.+||.--.+..+ |- .+|..|.+... +-.+-. +. ..-.++||++|.+|+||++--+...|.+.|
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~----------i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKV----------IFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcce----------eEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 7788877666655 33 44555544321 111110 11 113599999999999999999999999999
Q ss_pred CCCCcc
Q psy11539 485 TKTKVY 490 (530)
Q Consensus 485 t~~~~~ 490 (530)
+.|+..
T Consensus 240 p~tGK~ 245 (310)
T KOG4499|consen 240 PTTGKI 245 (310)
T ss_pred CCCCcE
Confidence 985543
No 41
>KOG4659|consensus
Probab=94.11 E-value=3.6 Score=50.39 Aligned_cols=72 Identities=8% Similarity=-0.047 Sum_probs=55.8
Q ss_pred CCCcceEEc-CCCcEEEEccCCCeEEEEeCCCCccccCceeEEeec------------------CCceeecceeEEecCC
Q psy11539 457 TQASASAIN-SNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTS------------------RDILNFREEGEEEEEK 517 (530)
Q Consensus 457 sqs~G~aiD-~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d------------------~~~L~~Pd~l~Id~dG 517 (530)
+..=-||+| =+|.||+++.+...|++-.+-...=.+.|.++|+-+ +..|.||.||+||++|
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g 486 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMG 486 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCC
Confidence 456678999 889999999999999987664122234478888732 3379999999999999
Q ss_pred cEEEEEeecee
Q psy11539 518 ENTCTFLVNKY 528 (530)
Q Consensus 518 ~lYv~~~snr~ 528 (530)
.||+..-.+=+
T Consensus 487 ~lYfaD~t~IR 497 (1899)
T KOG4659|consen 487 NLYFADGTRIR 497 (1899)
T ss_pred cEEEecccEEE
Confidence 99998876543
No 42
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=93.92 E-value=0.082 Score=36.02 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCcceEEcCCCcEEEEccCCCeEEEE
Q psy11539 458 QASASAINSNGVMFYNLVTKHSVGCW 483 (530)
Q Consensus 458 qs~G~aiD~~G~LYft~~~~~aI~cW 483 (530)
.+.|+++|++|.||++|.+++.|.++
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 57899999999999999999999875
No 43
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.77 E-value=6.4 Score=37.48 Aligned_cols=124 Identities=21% Similarity=0.245 Sum_probs=72.8
Q ss_pred eEEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCc-CCCCCCCCceEEEEEEEeCCCcEEEEeCCCCCcc
Q psy11539 186 IGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSY-FDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNIL 264 (530)
Q Consensus 186 V~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~w-n~~~nc~~LvSV~rv~ID~cgRLWVLDtG~~~~~ 264 (530)
..+.++++||.. .+| +|..++..++. . -|+. .....+..+.+.....++ .+++.+...+
T Consensus 72 ~~~~~~~v~v~~---~~~---~l~~~d~~tG~---~-----~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 131 (238)
T PF13360_consen 72 PVVDGGRVYVGT---SDG---SLYALDAKTGK---V-----LWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSS----- 131 (238)
T ss_dssp EEEETTEEEEEE---TTS---EEEEEETTTSC---E-----EEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETC-----
T ss_pred eeeccccccccc---cee---eeEecccCCcc---e-----eeeeccccccccccccccCceEe-cCEEEEEecc-----
Confidence 356789999887 223 78888865433 1 2432 111122234555556665 6677777752
Q ss_pred cCccccCCCEEEEEECCCCcEEEEEECCCccc-ccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCe-EEE
Q psy11539 265 SSIQQLCPPKIMVFDLKTNTLIRKYILPTAQV-FEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT-SYR 340 (530)
Q Consensus 265 ~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~-~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~-swR 340 (530)
-+|+++|++||+++-.+.+...-. ...+.+.++.-.+.- .++.+|++..... ++.+|.++|+ .|+
T Consensus 132 --------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~-~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 132 --------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI--SDGRVYVSSGDGR-VVAVDLATGEKLWS 198 (238)
T ss_dssp --------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC--CTTEEEEECCTSS-EEEEETTTTEEEEE
T ss_pred --------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE--ECCEEEEEcCCCe-EEEEECCCCCEEEE
Confidence 349999999999999999844211 111123333333221 1349999987654 6666999997 464
No 44
>KOG1539|consensus
Probab=93.75 E-value=2 Score=50.10 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=117.6
Q ss_pred ceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEE
Q psy11539 239 LISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFA 318 (530)
Q Consensus 239 LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~A 318 (530)
.+++..+.++.||..=++=.... -|=+|++..|-..++|.-... -+.-+.++++| .-+..
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G------------~Id~fNmQSGi~r~sf~~~~a---h~~~V~gla~D-----~~n~~ 507 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKG------------TIDRFNMQSGIHRKSFGDSPA---HKGEVTGLAVD-----GTNRL 507 (910)
T ss_pred CcceEEEEEeccCceEEEeccCC------------eEEEEEcccCeeecccccCcc---ccCceeEEEec-----CCCce
Confidence 47788899999999877744332 278999999988887752111 13446788888 33445
Q ss_pred EEecCCCCeEEEEEccCCe---EEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCc------ccccccCCCccc
Q psy11539 319 YVNDVFRYGLIVYDFFKNT---SYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPEL------SGYKYKRHPYEY 389 (530)
Q Consensus 319 YItDsg~~gLIVyDl~~g~---swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~------~~~~~~~~~~~~ 389 (530)
-|+=...+-|-.||+.++. +||+.+. +.+.......+++.|++..-. ..-|+
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~------------~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv------- 568 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKSLRLGSS------------ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV------- 568 (910)
T ss_pred EEEccCcceEEEEecCCcceeeeeccCCC------------cceeeeeehhhhhhhhcCceeEEEEEchhhhh-------
Confidence 5665555567788888765 4555543 122222333344445444311 01111
Q ss_pred ccccccccCCccc---cccccCCCceEEEEeC-CCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEc
Q psy11539 390 YHYNVHHYNGTNV---DKTIRDDQRYMYFHSM-SSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAIN 465 (530)
Q Consensus 390 y~~~~~~~~~~~~---~~~~~~~~r~LYf~pl-sS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD 465 (530)
|-..-|+.+ ++..+.++|||--..| ++.+.|-|+|..|-|.-.- + ..+..+.+.
T Consensus 569 ----vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--------------d----~~~~sls~S 626 (910)
T KOG1539|consen 569 ----VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--------------D----SPCTSLSFS 626 (910)
T ss_pred ----hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec--------------C----CcceeeEEC
Confidence 111112222 3446788899999999 9999999999888664331 1 246667777
Q ss_pred CCCc-EEEEccCCCeEEEEeCCCCcccc
Q psy11539 466 SNGV-MFYNLVTKHSVGCWNTKTKVYLP 492 (530)
Q Consensus 466 ~~G~-LYft~~~~~aI~cWnt~~~~~~~ 492 (530)
.+|- |-.+-+.+++|+.|.-. .-|..
T Consensus 627 PngD~LAT~Hvd~~gIylWsNk-slF~~ 653 (910)
T KOG1539|consen 627 PNGDFLATVHVDQNGIYLWSNK-SLFKS 653 (910)
T ss_pred CCCCEEEEEEecCceEEEEEch-hHhee
Confidence 6664 44446788999999876 55543
No 45
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.22 E-value=5.3 Score=44.26 Aligned_cols=62 Identities=8% Similarity=-0.038 Sum_probs=37.2
Q ss_pred CcceEEcCCCcEEEEccCC--------------------------------CeEEEEeCCCCccccCcee------EEee
Q psy11539 459 ASASAINSNGVMFYNLVTK--------------------------------HSVGCWNTKTKVYLPQTQD------IVQT 500 (530)
Q Consensus 459 s~G~aiD~~G~LYft~~~~--------------------------------~aI~cWnt~~~~~~~~n~~------lV~~ 500 (530)
...++++.+|.||++.-.. .+|.+.|++ +..-+.|-- -|..
T Consensus 148 GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~D-GsiP~dNPf~~g~~~eIyA 226 (454)
T TIGR03606 148 GGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLD-GSIPKDNPSINGVVSHIFT 226 (454)
T ss_pred CceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCC-CCCCCCCCccCCCcceEEE
Confidence 5677899999999963322 267888877 533222210 1111
Q ss_pred cCCceeecceeEEecCCcEEEEE
Q psy11539 501 SRDILNFREEGEEEEEKENTCTF 523 (530)
Q Consensus 501 d~~~L~~Pd~l~Id~dG~lYv~~ 523 (530)
-.+.=|-+|+++.+|.||+..
T Consensus 227 --~G~RNp~Gla~dp~G~Lw~~e 247 (454)
T TIGR03606 227 --YGHRNPQGLAFTPDGTLYASE 247 (454)
T ss_pred --EeccccceeEECCCCCEEEEe
Confidence 012236688888889988753
No 46
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=93.15 E-value=0.077 Score=36.15 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=22.6
Q ss_pred eeecceeEEecCCcEEEEEeeceee
Q psy11539 505 LNFREEGEEEEEKENTCTFLVNKYV 529 (530)
Q Consensus 505 L~~Pd~l~Id~dG~lYv~~~snr~~ 529 (530)
|.+|.|++++++|.+||...-|++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV 25 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRV 25 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEE
Confidence 5689999999999999999988876
No 47
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.48 E-value=6.3 Score=41.27 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=49.0
Q ss_pred ceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcE-EEEEECCCcccccCccccceEEEeecCCCCeE
Q psy11539 239 LISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTL-IRKYILPTAQVFEGSLFSNIVTEVVEDCDHVF 317 (530)
Q Consensus 239 LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~l-i~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~ 317 (530)
|..+-.|.+..+|||+|.+.. -+|++++ +.+.. .....+++-.......|-+|++|..- -.+++
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~-------------G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f-~~n~~ 65 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERS-------------GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDF-ASNGY 65 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETT-------------TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTC-CCC-E
T ss_pred CCCceEEEEeCCCcEEEEeCC-------------ceEEEEe-CCCcCcceecccccccccccCCcccceecccc-CCCCE
Confidence 345678889899999999872 3488888 45554 22234543223345788999999321 12467
Q ss_pred EEEecCC--------CCeEEEEEccCC
Q psy11539 318 AYVNDVF--------RYGLIVYDFFKN 336 (530)
Q Consensus 318 AYItDsg--------~~gLIVyDl~~g 336 (530)
+|++=+. ...|+.|-+..+
T Consensus 66 lYv~~t~~~~~~~~~~~~v~r~~~~~~ 92 (331)
T PF07995_consen 66 LYVYYTNADEDGGDNDNRVVRFTLSDG 92 (331)
T ss_dssp EEEEEEEE-TSSSSEEEEEEEEEEETT
T ss_pred EEEEEEcccCCCCCcceeeEEEeccCC
Confidence 7765442 135666666555
No 48
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.41 E-value=2.3 Score=43.97 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=75.1
Q ss_pred cCCCceeeeEEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEEe
Q psy11539 178 PENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMD 257 (530)
Q Consensus 178 p~n~iP~GV~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVLD 257 (530)
|....-.||++.+++||.=. |+.|+- -..+.+.-.. -.--+||...|- |. -| ..+||+-|
T Consensus 87 ~~~~FgEGit~~~d~l~qLT--Wk~~~~---f~yd~~tl~~-~~~~~y~~EGWG-------Lt------~d-g~~Li~SD 146 (264)
T PF05096_consen 87 PPRYFGEGITILGDKLYQLT--WKEGTG---FVYDPNTLKK-IGTFPYPGEGWG-------LT------SD-GKRLIMSD 146 (264)
T ss_dssp TTT--EEEEEEETTEEEEEE--SSSSEE---EEEETTTTEE-EEEEE-SSS--E-------EE------EC-SSCEEEE-
T ss_pred CccccceeEEEECCEEEEEE--ecCCeE---EEEccccceE-EEEEecCCcceE-------EE------cC-CCEEEEEC
Confidence 45667789999999999766 888743 2234321100 012366665553 33 33 55788887
Q ss_pred CCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCe
Q psy11539 258 TGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT 337 (530)
Q Consensus 258 tG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~ 337 (530)
-- .+|..+|.++=++++++..... -.+-..+|-|..- ++++|.-==....|++.|..+|+
T Consensus 147 GS-------------~~L~~~dP~~f~~~~~i~V~~~-g~pv~~LNELE~i------~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 147 GS-------------SRLYFLDPETFKEVRTIQVTDN-GRPVSNLNELEYI------NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp SS-------------SEEEEE-TTT-SEEEEEE-EET-TEE---EEEEEEE------TTEEEEEETTSSEEEEEETTT-B
T ss_pred Cc-------------cceEEECCcccceEEEEEEEEC-CEECCCcEeEEEE------cCEEEEEeCCCCeEEEEeCCCCe
Confidence 53 5699999988889998887432 2334567766654 68888777678899999999997
Q ss_pred EEEEc
Q psy11539 338 SYRLT 342 (530)
Q Consensus 338 swRv~ 342 (530)
--.+.
T Consensus 207 V~~~i 211 (264)
T PF05096_consen 207 VVGWI 211 (264)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 49
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.17 E-value=2.3 Score=46.84 Aligned_cols=127 Identities=16% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeec--CCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCc
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVE--DCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYP 348 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~--~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~p 348 (530)
-.-+|++||+++.+++++++|+++ .-+.+++|. +....+.|+.=+....|..|=...+-.|..+-
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~--------g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~k----- 286 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEE--------GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEK----- 286 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TT--------EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEE-----
T ss_pred ccCeEEEEECCCCcEeeEEecCCC--------CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeE-----
Confidence 467899999999999999999875 234555554 55678888888888888888775566687652
Q ss_pred CCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEec
Q psy11539 349 EPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVST 428 (530)
Q Consensus 349 dP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T 428 (530)
.+.|..++..-- .+--| |.+-+ . -+ +.=.+|.|+-++|+||++-----.+-.-+.
T Consensus 287 -----Vi~ip~~~v~~~-~lp~m-l~~~~------~------~P------~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 287 -----VIDIPAKKVEGW-ILPEM-LKPFG------A------VP------PLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp -----EEEE--EE--SS----GG-GGGG-------E------E------------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred -----EEECCCcccCcc-ccccc-ccccc------c------CC------CceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 344444332100 00000 00000 0 00 112367788889999998876655544443
Q ss_pred chhcCcc
Q psy11539 429 TDLRNSS 435 (530)
Q Consensus 429 ~~Lrn~s 435 (530)
+.-.++.
T Consensus 342 SDP~~Pk 348 (461)
T PF05694_consen 342 SDPFNPK 348 (461)
T ss_dssp SSTTS-E
T ss_pred CCCCCCc
Confidence 3333333
No 50
>KOG1520|consensus
Probab=92.17 E-value=0.86 Score=49.08 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=72.4
Q ss_pred CCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEc-CCCcEEEEccCCCeEEEEeCC
Q psy11539 408 DDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAIN-SNGVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 408 ~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD-~~G~LYft~~~~~aI~cWnt~ 486 (530)
.++|.|+|......-+-.+.+..-.+.+.- .+ ...++.-...| .+-|++.| +.|.||++|.-. ++...++.
T Consensus 73 ~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~---~~-~~~~~~e~~CG---RPLGl~f~~~ggdL~VaDAYl-GL~~V~p~ 144 (376)
T KOG1520|consen 73 VDGRILKYTGNDDGWVKFADTKDSTNRSQC---CD-PGSFETEPLCG---RPLGIRFDKKGGDLYVADAYL-GLLKVGPE 144 (376)
T ss_pred ECCceEEEeccCceEEEEEecccccccccc---CC-CcceecccccC---CcceEEeccCCCeEEEEecce-eeEEECCC
Confidence 467899999987776777766411111110 00 01333333334 79999999 555999999864 58888887
Q ss_pred CCccccCceeEEe--ecCCceeecceeEEecCCcEEEEEeecee
Q psy11539 487 TKVYLPQTQDIVQ--TSRDILNFREEGEEEEEKENTCTFLVNKY 528 (530)
Q Consensus 487 ~~~~~~~n~~lV~--~d~~~L~~Pd~l~Id~dG~lYv~~~snr~ 528 (530)
+... ++++ .+...+.|.+++-|+++|.+|++..|-|+
T Consensus 145 -g~~a----~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~ 183 (376)
T KOG1520|consen 145 -GGLA----ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKY 183 (376)
T ss_pred -CCcc----eeccccccCeeeeecCceeEcCCCeEEEecccccc
Confidence 5442 2333 23346999999999999999999999865
No 51
>KOG4499|consensus
Probab=91.83 E-value=0.42 Score=48.89 Aligned_cols=66 Identities=8% Similarity=-0.032 Sum_probs=49.3
Q ss_pred CCcceEEc-CCCcEEEEccCCCeEEEEe--CCCCccccCceeEEe----ecCCceeecceeEEecCCcEEEEEee
Q psy11539 458 QASASAIN-SNGVMFYNLVTKHSVGCWN--TKTKVYLPQTQDIVQ----TSRDILNFREEGEEEEEKENTCTFLV 525 (530)
Q Consensus 458 qs~G~aiD-~~G~LYft~~~~~aI~cWn--t~~~~~~~~n~~lV~----~d~~~L~~Pd~l~Id~dG~lYv~~~s 525 (530)
-+-|++.| ....+||.+..+..|-.|| -.++... |-..|. ..+..-.+|||+.||.+|+|||.+-+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--nr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n 231 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--NRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN 231 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCccccc--CcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec
Confidence 68899999 6788999999999998888 3323332 333333 22345678999999999999998754
No 52
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=91.77 E-value=9.3 Score=39.89 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeee
Q psy11539 314 DHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRW 364 (530)
Q Consensus 314 ~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~ 364 (530)
.+.-+-||-.-..||+|||+..+....+...-+.--...-.|.++|+.+..
T Consensus 65 P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idi 115 (364)
T COG4247 65 PDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDI 115 (364)
T ss_pred cCcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEE
Confidence 455667777778899999999876665553222111122256677776643
No 53
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.66 E-value=1.7 Score=45.34 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=71.7
Q ss_pred CceEEEEEEEe-CCCcEEEE-eCCCCCcccCccccCCCEEEEEECCCC-------cEEEEEECCCcccccCccc------
Q psy11539 238 SLISVFRMSVD-KCDRLWIM-DTGVTNILSSIQQLCPPKIMVFDLKTN-------TLIRKYILPTAQVFEGSLF------ 302 (530)
Q Consensus 238 ~LvSV~rv~ID-~cgRLWVL-DtG~~~~~~~~~~~c~PKLvvfDL~Td-------~li~~y~~P~~v~~~~S~l------ 302 (530)
.|-..-++..| ..|++|+| |.|. + ..+++++.+++..+ ++...+.|... .+.-+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---~G~~~~~~~~D 86 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGP-N-------KGPPRFYTFRIDYDQGGIGGVTILDMIPLRDP---DGQPFPKNGLD 86 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCC-C-------CCCCcEEEEEeeccCCCccceEeccceeccCC---CCCcCCcCCCC
Confidence 34455667778 68999987 9987 2 25788888887652 23333333221 12222
Q ss_pred -cceEEEeecCCCCeEEEEecCCC------CeEEEEEccCCeEE-EEc-CCCCCcCCCcceeeecCeEeeecCCccceec
Q psy11539 303 -SNIVTEVVEDCDHVFAYVNDVFR------YGLIVYDFFKNTSY-RLT-HPYMYPEPTQSTYILDNLKFRWVDGIFGMAI 373 (530)
Q Consensus 303 -ndIvVDv~~~c~~~~AYItDsg~------~gLIVyDl~~g~sw-Rv~-h~sf~pdP~~~~f~I~G~~f~~~dGi~GIAL 373 (530)
-.|+++ .++-+||++-+. +.|+.||.. |+.- ++. ...+.+.... ....+-.-|+=|||+
T Consensus 87 ~Egi~~~-----~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~------~~~~~~N~G~E~la~ 154 (326)
T PF13449_consen 87 PEGIAVP-----PDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANG------TSGRRNNRGFEGLAV 154 (326)
T ss_pred hhHeEEe-----cCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCc------cccccCCCCeEEEEE
Confidence 257774 578899999999 999999988 6542 231 2222222110 022233457789999
Q ss_pred CCCc
Q psy11539 374 SPEL 377 (530)
Q Consensus 374 sp~~ 377 (530)
+|++
T Consensus 155 ~~dG 158 (326)
T PF13449_consen 155 SPDG 158 (326)
T ss_pred CCCC
Confidence 9997
No 54
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.41 E-value=25 Score=38.35 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=38.0
Q ss_pred CCCcceEEc-CCCcEEEEccCCCeEEEEeCCCCccccCceeEEeec-CCcee-ecceeEE--ecCCcEEEEEee
Q psy11539 457 TQASASAIN-SNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTS-RDILN-FREEGEE--EEEKENTCTFLV 525 (530)
Q Consensus 457 sqs~G~aiD-~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d-~~~L~-~Pd~l~I--d~dG~lYv~~~s 525 (530)
+|+-|+++| +.|.||+++-. .+|++++.+ |-....-.+|..- .+.|. =..||++ ..+|.=|+++.|
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Ae--p~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSs 278 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAE--PEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSS 278 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-TEEEEEESS--CCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEE
T ss_pred CcceEEEEecccCCEEEecCc-cEEEEEecC--CCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEc
Confidence 699999999 88999999966 589999876 2211122334321 22232 2557777 344555665554
No 55
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.93 E-value=8.6 Score=40.28 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=40.8
Q ss_pred ceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEE
Q psy11539 411 RYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGC 482 (530)
Q Consensus 411 r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~c 482 (530)
..+++.-+.+.+++++..+. .. .....-+.+++.+ ....+++++.+|.||+++-..++|++
T Consensus 271 g~~~~~~~~~~~i~~~~~~~---~~------~~~~~~~~~~~~~--~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDE---DG------SVTEEEEFLGGFG--GRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp TEEEEEETTTTEEEEEEEET---TE------EEEEEEEECTTSS--S-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred CcEEEecCCCCEEEEEeeec---CC------CccceEEccccCC--CCceEEEEcCCCeEEEEECCCCeEeC
Confidence 46888899999999997421 11 1122233344332 35789999999999999988888875
No 56
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=90.87 E-value=0.59 Score=34.70 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=33.6
Q ss_pred CcEEEEccCCC-eEEEEeCCCCccccCceeEEeecCCceeecceeEEec
Q psy11539 468 GVMFYNLVTKH-SVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEE 515 (530)
Q Consensus 468 G~LYft~~~~~-aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~ 515 (530)
|.||+++.... .|.+-+.+ +. +.++|.++ .|.+|.||+||.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~d-Gs----~~~~vi~~--~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLD-GS----NRRTVISD--DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETT-ST----SEEEEEES--STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECC-CC----CeEEEEEC--CCCCcCEEEECC
Confidence 57999999999 99999988 52 45677763 499999999983
No 57
>KOG1214|consensus
Probab=90.69 E-value=2.7 Score=49.37 Aligned_cols=174 Identities=9% Similarity=0.031 Sum_probs=105.3
Q ss_pred CCCEEEEEECCCCcEEEEEEC----CCccccc-CccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCC
Q psy11539 271 CPPKIMVFDLKTNTLIRKYIL----PTAQVFE-GSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPY 345 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~----P~~v~~~-~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~s 345 (530)
|.-+.|.|--.++.-|+|-.| |+.++.. .+-...|+||- -...+|-||+....|=|-.|. |+..|++-..
T Consensus 1034 C~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh----~~Rn~ywtDS~lD~IevA~Ld-G~~rkvLf~t 1108 (1289)
T KOG1214|consen 1034 CRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDH----IRRNMYWTDSVLDKIEVALLD-GSERKVLFYT 1108 (1289)
T ss_pred cccceEEEeecCCCccccccccCCCCceeecccCCCccceeeee----ccceeeeeccccchhheeecC-CceeeEEEee
Confidence 556666665556777777766 2223322 13345799995 367899999998888887776 7777776210
Q ss_pred CCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEE
Q psy11539 346 MYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYY 425 (530)
Q Consensus 346 f~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~ 425 (530)
+ + | ..-+|++++.+ +.|||+--.-.. =.
T Consensus 1109 ---d-----L-V---------NPR~iv~D~~r---------------------------------gnLYwtDWnRen-Pk 1136 (1289)
T KOG1214|consen 1109 ---D-----L-V---------NPRAIVVDPIR---------------------------------GNLYWTDWNREN-PK 1136 (1289)
T ss_pred ---c-----c-c---------CcceEEeeccc---------------------------------CceeeccccccC-Cc
Confidence 0 0 0 12367787765 788884332211 11
Q ss_pred EecchhcCccccCCccccccceEEec-cccCCCCCcceEEc-CCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCC
Q psy11539 426 VSTTDLRNSSRYVNSSDIDEYFHYLG-SRFKNTQASASAIN-SNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRD 503 (530)
Q Consensus 426 V~T~~Lrn~s~~~~~~~~~~~v~~lG-~rG~~sqs~G~aiD-~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~ 503 (530)
|.|+.+. ++. .-.++- +.| -+.|+.+| -.--|-..|.+.+.+-|..++ +.= +.+++ .
T Consensus 1137 Iets~mD--------G~N--rRilin~Dig---LPNGLtfdpfs~~LCWvDAGt~rleC~~p~-g~g-----RR~i~--~ 1195 (1289)
T KOG1214|consen 1137 IETSSMD--------GEN--RRILINTDIG---LPNGLTFDPFSKLLCWVDAGTKRLECTLPD-GTG-----RRVIQ--N 1195 (1289)
T ss_pred ceeeccC--------Ccc--ceEEeecccC---CCCCceeCcccceeeEEecCCcceeEecCC-CCc-----chhhh--h
Confidence 2222221 111 111222 222 58899999 446788899999999999998 632 23333 3
Q ss_pred ceeecceeEEecCCcEEEEE
Q psy11539 504 ILNFREEGEEEEEKENTCTF 523 (530)
Q Consensus 504 ~L~~Pd~l~Id~dG~lYv~~ 523 (530)
.|++|=+|.-+.+ ++|.+.
T Consensus 1196 ~LqYPF~itsy~~-~fY~TD 1214 (1289)
T KOG1214|consen 1196 NLQYPFSITSYAD-HFYHTD 1214 (1289)
T ss_pred cccCceeeeeccc-cceeec
Confidence 6999988877755 477653
No 58
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.41 E-value=1.2 Score=47.27 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=53.2
Q ss_pred CCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEE-eecCCCC
Q psy11539 237 NSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTE-VVEDCDH 315 (530)
Q Consensus 237 ~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVD-v~~~c~~ 315 (530)
++|.-+.+.+- .+||||++|+|..+ |..+|+++|+....-.+|. ....-.++.++.|= +.. -+
T Consensus 200 ~GLsmPhSPRW-hdgrLwvldsgtGe------------v~~vD~~~G~~e~Va~vpG-~~rGL~f~G~llvVgmSk--~R 263 (335)
T TIGR03032 200 SGLSMPHSPRW-YQGKLWLLNSGRGE------------LGYVDPQAGKFQPVAFLPG-FTRGLAFAGDFAFVGLSK--LR 263 (335)
T ss_pred cCccCCcCCcE-eCCeEEEEECCCCE------------EEEEcCCCCcEEEEEECCC-CCcccceeCCEEEEEecc--cc
Confidence 44444444444 47999999999855 9999999998887778864 23333444444432 111 11
Q ss_pred eEEE-----Eec---CCCCeEEEEEccCCeE
Q psy11539 316 VFAY-----VND---VFRYGLIVYDFFKNTS 338 (530)
Q Consensus 316 ~~AY-----ItD---sg~~gLIVyDl~~g~s 338 (530)
.-.. |.+ ...-||.|.|+++|..
T Consensus 264 ~~~~f~glpl~~~l~~~~CGv~vidl~tG~v 294 (335)
T TIGR03032 264 ESRVFGGLPIEERLDALGCGVAVIDLNSGDV 294 (335)
T ss_pred CCCCcCCCchhhhhhhhcccEEEEECCCCCE
Confidence 1122 111 1247999999999964
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.38 E-value=14 Score=33.85 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=35.4
Q ss_pred EEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEE
Q psy11539 274 KIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYR 340 (530)
Q Consensus 274 KLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swR 340 (530)
.|.+||+.+++.+..+.... ..+..+.+. .++..+++....+.|.+||+.+++..+
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~------~~i~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHT------SYVSSVAFS-----PDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred eEEEEEcCcccceEEEeccC------CcEEEEEEc-----CCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 49999999887777665322 234455554 223344444456789999999765444
No 60
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.35 E-value=35 Score=38.33 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=36.6
Q ss_pred EEEeCCCcEEEEeCCCCCcc-cCcc---ccCCCEEEEEECCCCcEEEEEEC-CCcccccCccccceEEEe
Q psy11539 245 MSVDKCDRLWIMDTGVTNIL-SSIQ---QLCPPKIMVFDLKTNTLIRKYIL-PTAQVFEGSLFSNIVTEV 309 (530)
Q Consensus 245 v~ID~cgRLWVLDtG~~~~~-~~~~---~~c~PKLvvfDL~Td~li~~y~~-P~~v~~~~S~lndIvVDv 309 (530)
+.+|+.-.|-.+=+|.+.-. +..+ -.-.-.|+++|++||++.=.|.. |.++---+....-+.+|+
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 37788666666667763211 1100 11244899999999999888876 444322222233445554
No 61
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.09 E-value=27 Score=39.18 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=41.9
Q ss_pred CEEEEEECCCCcEEEEEECCCc--ccccCc--cc-cceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeE-EEEc
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTA--QVFEGS--LF-SNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTS-YRLT 342 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~--v~~~~S--~l-ndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~s-wRv~ 342 (530)
.+|+++|++||+++-++..... +..... .. ..+++. ++.+|+.+. ...|+.+|.++|+. |+..
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~------~~~v~v~t~-dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY------DGKVFFGTL-DARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEE------CCEEEEEcC-CCEEEEEECCCCCEEeecc
Confidence 3699999999999998887332 110000 01 234554 568899875 45899999998876 7654
No 62
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.63 E-value=49 Score=36.49 Aligned_cols=68 Identities=9% Similarity=-0.039 Sum_probs=39.4
Q ss_pred EEEEEECCCCcEEEEEECCCccccc-CccccceEEEeecCCC--CeEEEEecCCCCeEEEEEccCCeE-EEEc
Q psy11539 274 KIMVFDLKTNTLIRKYILPTAQVFE-GSLFSNIVTEVVEDCD--HVFAYVNDVFRYGLIVYDFFKNTS-YRLT 342 (530)
Q Consensus 274 KLvvfDL~Td~li~~y~~P~~v~~~-~S~lndIvVDv~~~c~--~~~AYItDsg~~gLIVyDl~~g~s-wRv~ 342 (530)
.|+++|++||+++=++.+....... ...-.-+..++..-.. ...+|+.... +.|+.+|.++|+- |+..
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-GFFYVLDRTTGKLISARP 328 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-ceEEEEECCCCcEeeEeE
Confidence 7999999999999988774321111 1101112222110001 2368887643 4599999999864 6544
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.37 E-value=32 Score=35.74 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=34.5
Q ss_pred eEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcc
Q psy11539 240 ISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQ 295 (530)
Q Consensus 240 vSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v 295 (530)
.-.|++.++..|.||.- +|. .+.-+|..+|++|++++++..||+..
T Consensus 45 aFTQGL~~~~~g~LyES-TG~---------yG~S~l~~~d~~tg~~~~~~~l~~~~ 90 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYES-TGL---------YGQSSLRKVDLETGKVLQSVPLPPRY 90 (264)
T ss_dssp -EEEEEEEEETTEEEEE-ECS---------TTEEEEEEEETTTSSEEEEEE-TTT-
T ss_pred ccCccEEecCCCEEEEe-CCC---------CCcEEEEEEECCCCcEEEEEECCccc
Confidence 45688898778888864 443 34467999999999999999998764
No 64
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=85.16 E-value=0.95 Score=33.14 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=23.4
Q ss_pred eEEeccccCCCCCcceEEcCCCcEEEEccCC
Q psy11539 447 FHYLGSRFKNTQASASAINSNGVMFYNLVTK 477 (530)
Q Consensus 447 v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~ 477 (530)
++.+|..+....+.++++|++|++|++-...
T Consensus 3 ~~~lG~~~~~~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 3 STQLGGPGAQDYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEeCCCCCceeEEEEEECCCCCEEEEEeec
Confidence 4567754444568999999999999986554
No 65
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=84.94 E-value=12 Score=41.88 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=59.0
Q ss_pred CCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCe
Q psy11539 237 NSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHV 316 (530)
Q Consensus 237 ~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~ 316 (530)
..|-.++++.++.+|.--|+-.-+. .|+++|+.||++- .++-. ...++.++++.. ..+-
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNdr~------------el~vididngnv~-~idkS-----~~~lItdf~~~~---nsr~ 457 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVANDRF------------ELWVIDIDNGNVR-LIDKS-----EYGLITDFDWHP---NSRW 457 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcCce------------EEEEEEecCCCee-Eeccc-----ccceeEEEEEcC---Ccee
Confidence 4577788888888877666644443 3999999998763 22221 234567777762 2456
Q ss_pred EEEEecCC--CCeEEEEEccCCeEEEEcCC
Q psy11539 317 FAYVNDVF--RYGLIVYDFFKNTSYRLTHP 344 (530)
Q Consensus 317 ~AYItDsg--~~gLIVyDl~~g~swRv~h~ 344 (530)
+||--=.+ ...|-+||+.+++..++..+
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 67754444 35899999999999999854
No 66
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.44 E-value=6.4 Score=42.14 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=48.9
Q ss_pred CCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCC-----
Q psy11539 250 CDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF----- 324 (530)
Q Consensus 250 cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg----- 324 (530)
..|++|+|.+.-.. . -+++++|..+++++-.+.- +++.++++. .++.++|++.+.
T Consensus 2 ~~rvyV~D~~~~~~------~--~rv~viD~d~~k~lGmi~~--------g~~~~~~~s----pdgk~~y~a~T~~sR~~ 61 (342)
T PF06433_consen 2 AHRVYVQDPVFFHM------T--SRVYVIDADSGKLLGMIDT--------GFLGNVALS----PDGKTIYVAETFYSRGT 61 (342)
T ss_dssp TTEEEEEE-GGGGS------S--EEEEEEETTTTEEEEEEEE--------ESSEEEEE-----TTSSEEEEEEEEEEETT
T ss_pred CcEEEEECCccccc------c--ceEEEEECCCCcEEEEeec--------ccCCceeEC----CCCCEEEEEEEEEeccc
Confidence 35999999987542 1 3899999999999876654 567778886 378899998873
Q ss_pred ----CCeEEEEEccCC
Q psy11539 325 ----RYGLIVYDFFKN 336 (530)
Q Consensus 325 ----~~gLIVyDl~~g 336 (530)
..-|-+||.++=
T Consensus 62 rG~RtDvv~~~D~~TL 77 (342)
T PF06433_consen 62 RGERTDVVEIWDTQTL 77 (342)
T ss_dssp EEEEEEEEEEEETTTT
T ss_pred cccceeEEEEEecCcC
Confidence 235778887765
No 67
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.90 E-value=6.6 Score=41.02 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcc---------cccCccccceEEEeec
Q psy11539 241 SVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQ---------VFEGSLFSNIVTEVVE 311 (530)
Q Consensus 241 SV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v---------~~~~S~lndIvVDv~~ 311 (530)
-.-+|+++..|.+||.|-|... ....|.|+.||+. |++++++.+|... ...+..|-.|++..
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-- 156 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-- 156 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC--
Confidence 3445666789999999999743 2238999999996 9999999998865 23456788888872
Q ss_pred CCCCeEEEEe
Q psy11539 312 DCDHVFAYVN 321 (530)
Q Consensus 312 ~c~~~~AYIt 321 (530)
++..+|+.
T Consensus 157 --dG~~l~~~ 164 (326)
T PF13449_consen 157 --DGRTLFAA 164 (326)
T ss_pred --CCCEEEEE
Confidence 33445554
No 68
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=81.59 E-value=2.9 Score=29.39 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=26.9
Q ss_pred CCCcceEEc-CCCcEEEEccCCCeEEEEeCC
Q psy11539 457 TQASASAIN-SNGVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 457 sqs~G~aiD-~~G~LYft~~~~~aI~cWnt~ 486 (530)
..+.|+++| ..+.||+++.....|.+.+-+
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 468899999 778999999999999998876
No 69
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=80.30 E-value=61 Score=35.78 Aligned_cols=123 Identities=11% Similarity=0.170 Sum_probs=71.6
Q ss_pred EEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCC----CCCCceEEEEEEEeCCCcEEEEeCCCCC
Q psy11539 187 GIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDS----NCNSLISVFRMSVDKCDRLWIMDTGVTN 262 (530)
Q Consensus 187 ~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~----nc~~LvSV~rv~ID~cgRLWVLDtG~~~ 262 (530)
.+.++++|+..-. | .|.-++..++. .+ |+..... .+..++ ..++.+...+++++-+..
T Consensus 58 vv~~g~vy~~~~~---g---~l~AlD~~tG~---~~-----W~~~~~~~~~~~~~~~~-~~g~~~~~~~~V~v~~~~--- 119 (488)
T cd00216 58 LVVDGDMYFTTSH---S---ALFALDAATGK---VL-----WRYDPKLPADRGCCDVV-NRGVAYWDPRKVFFGTFD--- 119 (488)
T ss_pred EEECCEEEEeCCC---C---cEEEEECCCCh---hh-----ceeCCCCCccccccccc-cCCcEEccCCeEEEecCC---
Confidence 4679999998643 3 57778765432 11 3322110 011111 112334334788886532
Q ss_pred cccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC--------CCCeEEEEEcc
Q psy11539 263 ILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV--------FRYGLIVYDFF 334 (530)
Q Consensus 263 ~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs--------g~~gLIVyDl~ 334 (530)
-.|+++|.+||+++-++.+..............+|+ ++.+|+... ....|+.+|..
T Consensus 120 ----------g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~------~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 120 ----------GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV------KKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred ----------CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE------CCEEEEeccccccccCCCCcEEEEEECC
Confidence 249999999999999998865421111122345565 367777643 24579999998
Q ss_pred CCe-EEEEcC
Q psy11539 335 KNT-SYRLTH 343 (530)
Q Consensus 335 ~g~-swRv~h 343 (530)
+|+ .|+...
T Consensus 184 TG~~~W~~~~ 193 (488)
T cd00216 184 TGKLLWRFYT 193 (488)
T ss_pred CCceeeEeec
Confidence 876 488753
No 70
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.91 E-value=7.1 Score=27.56 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=26.3
Q ss_pred CCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCC
Q psy11539 250 CDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPT 293 (530)
Q Consensus 250 cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~ 293 (530)
.++|||.+.+. -.|.+||++++++++++....
T Consensus 3 ~~~lyv~~~~~------------~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 3 GTKLYVTNSGS------------NTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCEEEEEeCCC------------CEEEEEECCCCeEEEEEECCC
Confidence 46799999874 359999999999999988843
No 71
>KOG0286|consensus
Probab=77.79 E-value=1e+02 Score=32.86 Aligned_cols=170 Identities=9% Similarity=0.068 Sum_probs=94.0
Q ss_pred cCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcC
Q psy11539 270 LCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPE 349 (530)
Q Consensus 270 ~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pd 349 (530)
.+--+...||+++++.+..|.=.. -.=+.+++.+ .+..-||+=.-+..-.+||.+.+...+-.+ ..|
T Consensus 163 SGD~TCalWDie~g~~~~~f~GH~--------gDV~slsl~p--~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghe 229 (343)
T KOG0286|consen 163 SGDMTCALWDIETGQQTQVFHGHT--------GDVMSLSLSP--SDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHE 229 (343)
T ss_pred CCCceEEEEEcccceEEEEecCCc--------ccEEEEecCC--CCCCeEEecccccceeeeeccCcceeEeec---ccc
Confidence 366778999999999988665211 1224566654 256778887777777889999884433111 011
Q ss_pred CCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecc
Q psy11539 350 PTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTT 429 (530)
Q Consensus 350 P~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~ 429 (530)
..|+.+.+-|.+ |-+..-..|+ ..+||-+.+.
T Consensus 230 ----------------sDINsv~ffP~G------------~afatGSDD~--------------------tcRlyDlRaD 261 (343)
T KOG0286|consen 230 ----------------SDINSVRFFPSG------------DAFATGSDDA--------------------TCRLYDLRAD 261 (343)
T ss_pred ----------------cccceEEEccCC------------CeeeecCCCc--------------------eeEEEeecCC
Confidence 124444444443 1111111111 2356644321
Q ss_pred hhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCceeecc
Q psy11539 430 DLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFRE 509 (530)
Q Consensus 430 ~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd 509 (530)
. ++..+-......--.++++...|+|.|+-.....+..||+- + .+.+++++--+.|+ +
T Consensus 262 ----~-----------~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl-k---~e~vg~L~GHeNRv---S 319 (343)
T KOG0286|consen 262 ----Q-----------ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL-K---GERVGVLAGHENRV---S 319 (343)
T ss_pred ----c-----------EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecc-c---cceEEEeeccCCee---E
Confidence 1 11111111122234567788999999998999999999986 3 33566776433343 3
Q ss_pred eeEEecCCcEEEE
Q psy11539 510 EGEEEEEKENTCT 522 (530)
Q Consensus 510 ~l~Id~dG~lYv~ 522 (530)
.+.+.+||---++
T Consensus 320 cl~~s~DG~av~T 332 (343)
T KOG0286|consen 320 CLGVSPDGMAVAT 332 (343)
T ss_pred EEEECCCCcEEEe
Confidence 4555555544333
No 72
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=76.84 E-value=6.1 Score=27.68 Aligned_cols=33 Identities=9% Similarity=-0.157 Sum_probs=27.8
Q ss_pred ccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCC
Q psy11539 300 SLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKN 336 (530)
Q Consensus 300 S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g 336 (530)
...+.|++| +.++.+|.+|.....|-++++...
T Consensus 9 ~~~~~la~d----~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 9 GHPNGLAVD----WIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCcCEEEEe----ecCCEEEEEeCCCCEEEEEeCCCC
Confidence 456789999 567899999999999999998754
No 73
>KOG0265|consensus
Probab=75.16 E-value=1.2e+02 Score=32.49 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=32.7
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCC-CeEEEEecCCCCeEEEEEccCCeE
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCD-HVFAYVNDVFRYGLIVYDFFKNTS 338 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~-~~~AYItDsg~~gLIVyDl~~g~s 338 (530)
-.|.+||..||+.++++...... .|.+. + |+ +-..-.+=+.+..+-|||.++...
T Consensus 112 k~v~~wD~~tG~~~rk~k~h~~~------vNs~~--p---~rrg~~lv~SgsdD~t~kl~D~R~k~~ 167 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGHTSF------VNSLD--P---SRRGPQLVCSGSDDGTLKLWDIRKKEA 167 (338)
T ss_pred ceEEEEecccceeeehhccccce------eeecC--c---cccCCeEEEecCCCceEEEEeecccch
Confidence 46999999999999988875543 22222 1 12 233334444455666677664433
No 74
>PRK04792 tolB translocation protein TolB; Provisional
Probab=75.16 E-value=1.3e+02 Score=32.80 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=33.8
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEc
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~ 342 (530)
+.+.|+++|+.++++.+.... ........+. + ++...+|.+|. +...|+++|+.+++..|+.
T Consensus 284 g~~~Iy~~dl~tg~~~~lt~~-------~~~~~~p~wS--p-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 284 GQPEIYVVDIATKALTRITRH-------RAIDTEPSWH--P-DGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCeEEEEEECCCCCeEECccC-------CCCccceEEC--C-CCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 345677777766654321111 1111223332 1 23456677764 4568999999988766654
No 75
>PRK04043 tolB translocation protein TolB; Provisional
Probab=73.79 E-value=57 Score=35.55 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCeEEEEecCC-CCeEEEEEccCCeEEEEc
Q psy11539 314 DHVFAYVNDVF-RYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 314 ~~~~AYItDsg-~~gLIVyDl~~g~swRv~ 342 (530)
+...+|.+|-. .+.|+++|+.+|+..|+.
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 45688888764 458999999999887765
No 76
>PRK04043 tolB translocation protein TolB; Provisional
Probab=73.36 E-value=64 Score=35.13 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=37.1
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEcC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLTH 343 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~h 343 (530)
|.|+++|+.+++..+...++.. ....+..++ +...||..+. +...|.++|+.+++..|+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~---------~~~~~~SPD-G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM---------LVVSDVSKD-GSKLLLTMAPKGQPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc---------EEeeEECCC-CCEEEEEEccCCCcEEEEEECCCCcEEEccc
Confidence 6799999988876554443221 111222221 3345565553 45789999999998777653
No 77
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.26 E-value=1.3e+02 Score=31.99 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=21.1
Q ss_pred CCCcceEEcCCCcEEEEccCCCeEEEEeC
Q psy11539 457 TQASASAINSNGVMFYNLVTKHSVGCWNT 485 (530)
Q Consensus 457 sqs~G~aiD~~G~LYft~~~~~aI~cWnt 485 (530)
.|+-|++||.+|+||+..-. |-.++|.+
T Consensus 284 pqaEGiamDd~g~lYIvSEP-nlfy~F~~ 311 (316)
T COG3204 284 PQAEGIAMDDDGNLYIVSEP-NLFYRFTP 311 (316)
T ss_pred CCcceeEECCCCCEEEEecC-Ccceeccc
Confidence 68999999999999998643 34555543
No 78
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=72.75 E-value=8.6 Score=43.31 Aligned_cols=65 Identities=6% Similarity=0.094 Sum_probs=47.4
Q ss_pred CCCcceEEc-CCCcEEEEccCCC-------------------eEEEEeCCCCc---cccCceeEEe--ec----------
Q psy11539 457 TQASASAIN-SNGVMFYNLVTKH-------------------SVGCWNTKTKV---YLPQTQDIVQ--TS---------- 501 (530)
Q Consensus 457 sqs~G~aiD-~~G~LYft~~~~~-------------------aI~cWnt~~~~---~~~~n~~lV~--~d---------- 501 (530)
..+-|++++ .+|.|||+..+.. .|++|++. +. .......++. .+
T Consensus 350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~-~~d~~~~~f~~~~~~~~g~~~~~~~~~~~ 428 (524)
T PF05787_consen 350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD-GNDHAATTFTWELFLVGGDPTDASGNGSN 428 (524)
T ss_pred cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc-CCccccceeEEEEEEEecCcccccccccC
Confidence 568899999 7899999987766 89999987 43 1111223333 22
Q ss_pred ---CCceeecceeEEecCCcEEEE
Q psy11539 502 ---RDILNFREEGEEEEEKENTCT 522 (530)
Q Consensus 502 ---~~~L~~Pd~l~Id~dG~lYv~ 522 (530)
...|.-||.|+++.+|.|||.
T Consensus 429 ~~~~~~f~sPDNL~~d~~G~LwI~ 452 (524)
T PF05787_consen 429 KCDDNGFASPDNLAFDPDGNLWIQ 452 (524)
T ss_pred cccCCCcCCCCceEECCCCCEEEE
Confidence 345889999999999999884
No 79
>PRK03629 tolB translocation protein TolB; Provisional
Probab=71.30 E-value=1.6e+02 Score=31.95 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=36.3
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCC-CCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF-RYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg-~~gLIVyDl~~g~swRv~ 342 (530)
.+.|+++|++++++.+...- .......... + +++..+|.+|.+ ...|.++|+.+++..++.
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~-------~~~~~~~~wS--P-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDG-------RSNNTEPTWF--P-DSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CcEEEEEECCCCCEEEccCC-------CCCcCceEEC--C-CCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 35688888888765432111 1112233332 2 245678999864 568889999888766654
No 80
>smart00284 OLF Olfactomedin-like domains.
Probab=70.10 E-value=1.4e+02 Score=30.91 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=85.4
Q ss_pred eecCChHHHHhhhcCCCc-ccCCCceeeeEEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCC-CCC
Q psy11539 159 FVFRDNKQKVNLIRSNKF-IPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDD-SNC 236 (530)
Q Consensus 159 f~~p~~~~r~~ai~sg~Y-ip~n~iP~GV~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~-~nc 236 (530)
++|++.++-.....+..| .|....=+|..|.+|-+|..- . -..+|.+.+...... -..+..|.+..|+. .=+
T Consensus 51 ~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~----~-~s~~iiKydL~t~~v-~~~~~Lp~a~y~~~~~Y~ 124 (255)
T smart00284 51 REYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNK----F-NSHDICRFDLTTETY-QKEPLLNGAGYNNRFPYA 124 (255)
T ss_pred EEecCHHHHhccCCceEEECCCccccccEEEECceEEEEe----c-CCccEEEEECCCCcE-EEEEecCccccccccccc
Confidence 455555443322222222 333344468888899999862 2 235799998864321 11233455544431 111
Q ss_pred CCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCe
Q psy11539 237 NSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHV 316 (530)
Q Consensus 237 ~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~ 316 (530)
-+=-+-+.+++|+.| |||+=....+. | . =-|-.+|..|=++++++..+-. ..+.=+.+.| | |
T Consensus 125 ~~~~sdiDlAvDE~G-LWvIYat~~~~-g---~---ivvSkLnp~tL~ve~tW~T~~~---k~sa~naFmv-----C--G 186 (255)
T smart00284 125 WGGFSDIDLAVDENG-LWVIYATEQNA-G---K---IVISKLNPATLTIENTWITTYN---KRSASNAFMI-----C--G 186 (255)
T ss_pred cCCCccEEEEEcCCc-eEEEEeccCCC-C---C---EEEEeeCcccceEEEEEEcCCC---cccccccEEE-----e--e
Confidence 222566789999776 99993221110 0 0 0123456655578888876321 2233356666 4 6
Q ss_pred EEEEecCC--CC--eEEEEEccCCeEEEE
Q psy11539 317 FAYVNDVF--RY--GLIVYDFFKNTSYRL 341 (530)
Q Consensus 317 ~AYItDsg--~~--gLIVyDl~~g~swRv 341 (530)
.+|++++. .. --.+||..+++.-.+
T Consensus 187 vLY~~~s~~~~~~~I~yayDt~t~~~~~~ 215 (255)
T smart00284 187 ILYVTRSLGSKGEKVFYAYDTNTGKEGHL 215 (255)
T ss_pred EEEEEccCCCCCcEEEEEEECCCCcccee
Confidence 89999973 23 357788887755444
No 81
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=70.09 E-value=10 Score=26.74 Aligned_cols=26 Identities=23% Similarity=0.117 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCCeEEEEEccCCeEE
Q psy11539 314 DHVFAYVNDVFRYGLIVYDFFKNTSY 339 (530)
Q Consensus 314 ~~~~AYItDsg~~gLIVyDl~~g~sw 339 (530)
++.++|+++.+...|.++|..+++.-
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 56799999999999999999877443
No 82
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=69.85 E-value=1.5e+02 Score=31.26 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=69.4
Q ss_pred eeeeEEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEEeCCCCC
Q psy11539 183 PLGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTN 262 (530)
Q Consensus 183 P~GV~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVLDtG~~~ 262 (530)
-.++.+.++++|+.. .. ..|.-++..++. .-|+....+. +.+ ...++ .++|+|....
T Consensus 113 ~~~~~v~~~~v~v~~---~~---g~l~ald~~tG~--------~~W~~~~~~~---~~s--sP~v~-~~~v~v~~~~--- 169 (394)
T PRK11138 113 SGGVTVAGGKVYIGS---EK---GQVYALNAEDGE--------VAWQTKVAGE---ALS--RPVVS-DGLVLVHTSN--- 169 (394)
T ss_pred ccccEEECCEEEEEc---CC---CEEEEEECCCCC--------CcccccCCCc---eec--CCEEE-CCEEEEECCC---
Confidence 356788899999974 22 368888865433 2354432211 111 11222 5677775321
Q ss_pred cccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCe-EEEE
Q psy11539 263 ILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT-SYRL 341 (530)
Q Consensus 263 ~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~-swRv 341 (530)
-.|++||++||+++-++.+....... ......+++ ++.+|+... .+.|+.+|..+|+ .|+.
T Consensus 170 ----------g~l~ald~~tG~~~W~~~~~~~~~~~-~~~~sP~v~------~~~v~~~~~-~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 170 ----------GMLQALNESDGAVKWTVNLDVPSLTL-RGESAPATA------FGGAIVGGD-NGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred ----------CEEEEEEccCCCEeeeecCCCCcccc-cCCCCCEEE------CCEEEEEcC-CCEEEEEEccCChhhhee
Confidence 35999999999999888874221100 112234454 345777653 4578889999886 4665
Q ss_pred c
Q psy11539 342 T 342 (530)
Q Consensus 342 ~ 342 (530)
.
T Consensus 232 ~ 232 (394)
T PRK11138 232 R 232 (394)
T ss_pred c
Confidence 3
No 83
>KOG0291|consensus
Probab=69.43 E-value=1.3e+02 Score=35.70 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=50.5
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEc
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~ 342 (530)
-.+-+|||+..+-.|+|..|+. ..|..++||. .+..+.+.+-....|.||++++|+.--++
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p-----~QfscvavD~----sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDP----SGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred CeEEeeeecccceeeeecCCCc-----eeeeEEEEcC----CCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 4578999999999999999875 4578899993 46788888888899999999999666555
No 84
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=69.40 E-value=4.6 Score=26.56 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.4
Q ss_pred EEEEEEEeCCCcEEEE
Q psy11539 241 SVFRMSVDKCDRLWIM 256 (530)
Q Consensus 241 SV~rv~ID~cgRLWVL 256 (530)
.|+.|..|..|+|||-
T Consensus 6 ~I~~i~~D~~G~lWig 21 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIG 21 (24)
T ss_dssp CEEEEEE-TTSCEEEE
T ss_pred eEEEEEEcCCcCEEEE
Confidence 6889999999999984
No 85
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=68.78 E-value=5.1 Score=29.30 Aligned_cols=25 Identities=8% Similarity=-0.043 Sum_probs=21.2
Q ss_pred CceeecceeEEecCCcEEEEEeece
Q psy11539 503 DILNFREEGEEEEEKENTCTFLVNK 527 (530)
Q Consensus 503 ~~L~~Pd~l~Id~dG~lYv~~~snr 527 (530)
....++.+|++|.+|++||+-.+|.
T Consensus 10 ~~~~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 10 GAQDYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred CCceeEEEEEECCCCCEEEEEeecC
Confidence 3456899999999999999988774
No 86
>KOG0291|consensus
Probab=68.15 E-value=2.6e+02 Score=33.33 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=110.6
Q ss_pred ceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEE
Q psy11539 239 LISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFA 318 (530)
Q Consensus 239 LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~A 318 (530)
+-++..+..-++|.+-+ ||.-+ -|+-+||...+--+.++.=+. |....+.+- ..+++
T Consensus 350 ~~~i~~l~YSpDgq~ia--TG~eD----------gKVKvWn~~SgfC~vTFteHt------s~Vt~v~f~-----~~g~~ 406 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIA--TGAED----------GKVKVWNTQSGFCFVTFTEHT------SGVTAVQFT-----ARGNV 406 (893)
T ss_pred ccceeeEEECCCCcEEE--eccCC----------CcEEEEeccCceEEEEeccCC------CceEEEEEE-----ecCCE
Confidence 44444555555555533 44433 579999999988887666543 444555554 45777
Q ss_pred EEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccC
Q psy11539 319 YVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYN 398 (530)
Q Consensus 319 YItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~ 398 (530)
-++=+-++.+-.||+...+-.|-. ..|+|. ++ .-+|.+|.|
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTf---t~P~p~-----------Qf----scvavD~sG--------------------- 447 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTF---TSPEPI-----------QF----SCVAVDPSG--------------------- 447 (893)
T ss_pred EEEeecCCeEEeeeecccceeeee---cCCCce-----------ee----eEEEEcCCC---------------------
Confidence 888888888999999988777632 234442 22 135666654
Q ss_pred CccccccccCCCceEEEEeCCCCeeE--EEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccC
Q psy11539 399 GTNVDKTIRDDQRYMYFHSMSSNRHY--YVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVT 476 (530)
Q Consensus 399 ~~~~~~~~~~~~r~LYf~plsS~~lY--~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~ 476 (530)
..+.-..+-+..+| ++.|.-|.+- .-|..| .-.|+.++..|.+.++..=
T Consensus 448 ------------elV~AG~~d~F~IfvWS~qTGqllDi--------------LsGHEg---PVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 448 ------------ELVCAGAQDSFEIFVWSVQTGQLLDI--------------LSGHEG---PVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred ------------CEEEeeccceEEEEEEEeecCeeeeh--------------hcCCCC---cceeeEEccccCeEEeccc
Confidence 23333333344444 4444444321 125544 4677889988889999888
Q ss_pred CCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEeec
Q psy11539 477 KHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLVN 526 (530)
Q Consensus 477 ~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~sn 526 (530)
...|..||.-...- .++.+....+-| ++++-++|..-++++.+
T Consensus 499 DkTVRiW~if~s~~---~vEtl~i~sdvl----~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSG---TVETLEIRSDVL----AVSFRPDGKELAVATLD 541 (893)
T ss_pred cceEEEEEeeccCc---eeeeEeecccee----EEEEcCCCCeEEEEEec
Confidence 89999999751211 233443333222 34555555554444444
No 87
>KOG2055|consensus
Probab=67.62 E-value=1.7e+02 Score=32.99 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=40.7
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYM 346 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf 346 (530)
-+|+..|-+++..++.+.|-. +-+....+- .|+.. .-|+=....-+++||+.+.+.-++...+-
T Consensus 237 lrifqvDGk~N~~lqS~~l~~------fPi~~a~f~---p~G~~-~i~~s~rrky~ysyDle~ak~~k~~~~~g 300 (514)
T KOG2055|consen 237 LRIFQVDGKVNPKLQSIHLEK------FPIQKAEFA---PNGHS-VIFTSGRRKYLYSYDLETAKVTKLKPPYG 300 (514)
T ss_pred EEEEEecCccChhheeeeecc------Cccceeeec---CCCce-EEEecccceEEEEeeccccccccccCCCC
Confidence 458888888888888777722 223333443 12222 44555556778999999998877765443
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=66.40 E-value=2e+02 Score=31.36 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=36.2
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEcC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLTH 343 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~h 343 (530)
++|+++|+.+++..+.-.++.. ....++. ++ ++..||..+. +...|+++|+.+++..++..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~-------~~~~~wS--PD-G~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI-------NGAPRFS--PD-GKKLALVLSKDGQPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC-------cCCeeEC--CC-CCEEEEEEeCCCCeEEEEEECCCCCeEECcc
Confidence 6799999988875432223211 1123332 21 3446666554 34579999999998776653
No 89
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=66.28 E-value=10 Score=40.15 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=27.6
Q ss_pred CCCEEEEEECCC-CcEEEEEECCCcccccCccccce-EEEeecCCCCeEEEEecCC
Q psy11539 271 CPPKIMVFDLKT-NTLIRKYILPTAQVFEGSLFSNI-VTEVVEDCDHVFAYVNDVF 324 (530)
Q Consensus 271 c~PKLvvfDL~T-d~li~~y~~P~~v~~~~S~lndI-vVDv~~~c~~~~AYItDsg 324 (530)
..++|+++|++| |++++++..+... ..+..+ .+|...+---.+||..|.+
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~----~gl~~~~~~D~d~DG~~D~vYaGDl~ 230 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGS----GGLSSPAVVDSDGDGYVDRVYAGDLG 230 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--ST----T-EEEEEEE-TTSSSEE-EEEEEETT
T ss_pred CCcEEEEEECCCCCceEEEEecCCCC----ccccccEEEeccCCCeEEEEEEEcCC
Confidence 568999999999 9999999886532 234443 3453222223578888865
No 90
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=65.97 E-value=32 Score=36.41 Aligned_cols=115 Identities=10% Similarity=0.106 Sum_probs=70.5
Q ss_pred EEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceE-------EEEEEEeCCCcEEEEeCC
Q psy11539 187 GIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLIS-------VFRMSVDKCDRLWIMDTG 259 (530)
Q Consensus 187 ~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvS-------V~rv~ID~cgRLWVLDtG 259 (530)
.+.++++|++.. .| .|.-++..++. . -|+..... ..++.+ .-++.++ .++++|.+..
T Consensus 66 vv~~~~vy~~~~---~g---~l~ald~~tG~---~-----~W~~~~~~-~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~ 129 (394)
T PRK11138 66 AVAYNKVYAADR---AG---LVKALDADTGK---E-----IWSVDLSE-KDGWFSKNKSALLSGGVTVA-GGKVYIGSEK 129 (394)
T ss_pred EEECCEEEEECC---CC---eEEEEECCCCc---E-----eeEEcCCC-cccccccccccccccccEEE-CCEEEEEcCC
Confidence 567999999853 23 67778765432 1 13322111 011111 0123443 5788876421
Q ss_pred CCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCe-E
Q psy11539 260 VTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT-S 338 (530)
Q Consensus 260 ~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~-s 338 (530)
-.|++||.+||+++-++.++..+ ....+|. ++.+|+... .+.|+.+|.++|+ .
T Consensus 130 -------------g~l~ald~~tG~~~W~~~~~~~~------~ssP~v~------~~~v~v~~~-~g~l~ald~~tG~~~ 183 (394)
T PRK11138 130 -------------GQVYALNAEDGEVAWQTKVAGEA------LSRPVVS------DGLVLVHTS-NGMLQALNESDGAVK 183 (394)
T ss_pred -------------CEEEEEECCCCCCcccccCCCce------ecCCEEE------CCEEEEECC-CCEEEEEEccCCCEe
Confidence 35999999999999999886542 2334554 467888653 4579999999887 4
Q ss_pred EEEcC
Q psy11539 339 YRLTH 343 (530)
Q Consensus 339 wRv~h 343 (530)
|+...
T Consensus 184 W~~~~ 188 (394)
T PRK11138 184 WTVNL 188 (394)
T ss_pred eeecC
Confidence 88764
No 91
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.88 E-value=1.7e+02 Score=30.17 Aligned_cols=41 Identities=24% Similarity=0.095 Sum_probs=30.6
Q ss_pred EEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCC
Q psy11539 242 VFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPT 293 (530)
Q Consensus 242 V~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~ 293 (530)
.|++..|.. -...-+|. .+.-||-++||.+++++..-.|++
T Consensus 48 TQGL~~~~g--~i~esTG~---------yg~S~ir~~~L~~gq~~~s~~l~~ 88 (262)
T COG3823 48 TQGLEYLDG--HILESTGL---------YGFSKIRVSDLTTGQEIFSEKLAP 88 (262)
T ss_pred hcceeeeCC--EEEEeccc---------cccceeEEEeccCceEEEEeecCC
Confidence 467777644 33455664 466899999999999999988863
No 92
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=65.64 E-value=46 Score=35.59 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCCEEEEEECCCC------cEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEE
Q psy11539 271 CPPKIMVFDLKTN------TLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYR 340 (530)
Q Consensus 271 c~PKLvvfDL~Td------~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swR 340 (530)
.+--|.++|...- -++.++.+ .+.++|++|- +.+||++| +..||.++|..+=++=+
T Consensus 59 qG~~l~i~ditn~~~~t~~~l~~~i~~-------~~l~~Dv~vs------e~yvyvad-~ssGL~IvDIS~P~sP~ 120 (370)
T COG5276 59 QGFILAILDITNVSLQTHDVLLSVINA-------RDLFADVRVS------EEYVYVAD-WSSGLRIVDISTPDSPT 120 (370)
T ss_pred cCceEeeccccCcccccCcceEEEEeh-------hhhhheeEec------ccEEEEEc-CCCceEEEeccCCCCcc
Confidence 4455777776321 23333333 3557788874 78999999 77899999998764443
No 93
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=64.48 E-value=12 Score=28.22 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=20.6
Q ss_pred cceEEEeecCCCCeEEEEecCCCCeEEEEEccCC
Q psy11539 303 SNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKN 336 (530)
Q Consensus 303 ndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g 336 (530)
.+|.|. +.||||+|.. .||.|+|...-
T Consensus 5 ~~v~v~------g~yaYva~~~-~Gl~IvDISnP 31 (42)
T PF08309_consen 5 RDVAVS------GNYAYVADGN-NGLVIVDISNP 31 (42)
T ss_pred EEEEEE------CCEEEEEeCC-CCEEEEECCCC
Confidence 455664 7899999755 69999998743
No 94
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=64.34 E-value=55 Score=35.81 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=48.9
Q ss_pred EEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEcCCCCCcCCCccee
Q psy11539 277 VFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTY 355 (530)
Q Consensus 277 vfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f 355 (530)
-.|..||..+.+..=++.. -..-+|.+=..- . -+...+|-+|. +...|..+|+++++.-++.+..
T Consensus 14 ~~D~~TG~~VtrLT~~~~~-~h~~YF~~~~ft--~-dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~---------- 79 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGH-SHRLYFYQNCFT--D-DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP---------- 79 (386)
T ss_dssp EE-TTT--EEEE-S-TTS--EE---TTS--B---T-TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----------
T ss_pred EeCCCCCceEEEecCCCCc-ccceeecCCCcC--C-CCCEEEEEeccCCCcceEEEEcccCEEEECccCC----------
Confidence 4577787555444333321 111223222221 0 14578888885 4578999999999888877420
Q ss_pred eecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhcCcc
Q psy11539 356 ILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSS 435 (530)
Q Consensus 356 ~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s 435 (530)
| ++.+|..++++. +.|||. -++.+|++|+.+-|....
T Consensus 80 ---g------~~~~g~~~s~~~---------------------------------~~~~Yv-~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 80 ---G------DNTFGGFLSPDD---------------------------------RALYYV-KNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp ----------B-TTT-EE-TTS---------------------------------SEEEEE-ETTTEEEEEETTT--EEE
T ss_pred ---C------CCccceEEecCC---------------------------------CeEEEE-ECCCeEEEEECCcCcEEE
Confidence 0 134566777664 777763 266789999987776544
Q ss_pred c
Q psy11539 436 R 436 (530)
Q Consensus 436 ~ 436 (530)
+
T Consensus 117 v 117 (386)
T PF14583_consen 117 V 117 (386)
T ss_dssp E
T ss_pred E
Confidence 3
No 95
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.86 E-value=31 Score=35.94 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=25.4
Q ss_pred EEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeE-EEE
Q psy11539 274 KIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTS-YRL 341 (530)
Q Consensus 274 KLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~s-wRv 341 (530)
.|++||++||+++-++.++ +......+++ ++.+|+. .....|+.+|.++|+. |+.
T Consensus 116 ~l~ald~~tG~~~W~~~~~------~~~~~~p~v~------~~~v~v~-~~~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLS------SEVLSPPLVA------NGLVVVR-TNDGRLTALDAATGERLWTY 171 (377)
T ss_pred EEEEEECCCCcEeeeeccC------ceeecCCEEE------CCEEEEE-CCCCeEEEEEcCCCceeeEE
Confidence 4555555555555544431 2333333332 4554443 2444455555555555 443
No 96
>KOG1446|consensus
Probab=62.77 E-value=2.2e+02 Score=30.44 Aligned_cols=181 Identities=12% Similarity=0.130 Sum_probs=88.7
Q ss_pred CccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCC-CCCcCCCcceeeecCeEeeecCCccceecCCC-
Q psy11539 299 GSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHP-YMYPEPTQSTYILDNLKFRWVDGIFGMAISPE- 376 (530)
Q Consensus 299 ~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~-sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~- 376 (530)
...++.|..+ ++|-.-|+-+....|.+||..+|+.-|..+. -...+ -..|+-+... ++...
T Consensus 14 ~~~i~sl~fs-----~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~--~~~Fth~~~~----------~i~sSt 76 (311)
T KOG1446|consen 14 NGKINSLDFS-----DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD--LACFTHHSNT----------VIHSST 76 (311)
T ss_pred CCceeEEEec-----CCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc--EEEEecCCce----------EEEccC
Confidence 4556677776 4566666756667999999999988886532 11111 1122211111 11110
Q ss_pred --cccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEecccc
Q psy11539 377 --LSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRF 454 (530)
Q Consensus 377 --~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG 454 (530)
...+||+- -.++++|=|=+-...++-++..+-..+.-++ +..++.+..|--|-
T Consensus 77 k~d~tIryLs----------------------l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS---~S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 77 KEDDTIRYLS----------------------LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLS---SSLDKTVRLWDLRV 131 (311)
T ss_pred CCCCceEEEE----------------------eecCceEEEcCCCCceEEEEEecCCCCeEEe---cccCCeEEeeEecC
Confidence 01222211 1123444333444444444444333322221 12233444443331
Q ss_pred CC-------CCCcceEEcCCCcEEEEccCCCeEEEEeCC---CCccccCceeEEeecCCceeecceeEEecCCcEEEEEe
Q psy11539 455 KN-------TQASASAINSNGVMFYNLVTKHSVGCWNTK---TKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFL 524 (530)
Q Consensus 455 ~~-------sqs~G~aiD~~G~LYft~~~~~aI~cWnt~---~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~ 524 (530)
++ +...-.|+|.+|-+|....+...|..+|.. .+||. .+ . ..+...-+| ++|++..||..-+..+
T Consensus 132 ~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~--tf-~-i~~~~~~ew-~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 132 KKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT--TF-S-ITDNDEAEW-TDLEFSPDGKSILLST 206 (311)
T ss_pred CCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCce--eE-c-cCCCCccce-eeeEEcCCCCEEEEEe
Confidence 11 224456999999777777777799999984 14443 12 1 121223333 4677777776555444
Q ss_pred ec
Q psy11539 525 VN 526 (530)
Q Consensus 525 sn 526 (530)
.+
T Consensus 207 ~~ 208 (311)
T KOG1446|consen 207 NA 208 (311)
T ss_pred CC
Confidence 33
No 97
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=62.46 E-value=1.2e+02 Score=32.55 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=66.2
Q ss_pred EEEEEEeCCCcEEEE----eCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCcccc---ceEEEeec-CC
Q psy11539 242 VFRMSVDKCDRLWIM----DTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFS---NIVTEVVE-DC 313 (530)
Q Consensus 242 V~rv~ID~cgRLWVL----DtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~ln---dIvVDv~~-~c 313 (530)
++.|+. -+++|+|. |....+ +..-.+--.|=+||+ .|++++|+.= ...|| .|++-... +.
T Consensus 191 PFnIqn-ig~~lyVtYA~qd~~~~d---~v~G~G~G~VdvFd~-~G~l~~r~as-------~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 191 PFNVQN-LGGTLYVTYAQQDADRND---EVAGAGLGYVNVFTL-NGQLLRRVAS-------SGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CcceEE-ECCeEEEEEEecCCcccc---cccCCCcceEEEEcC-CCcEEEEecc-------CCcccCCceeeeChhhhCC
Confidence 444443 26788887 555432 122345568999999 8899998743 12244 35554222 11
Q ss_pred CCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCC
Q psy11539 314 DHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPE 376 (530)
Q Consensus 314 ~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~ 376 (530)
-.+-+-|..-+++.|-+||..+|++---+.. +.-..+.| +|+-||++...
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~-----~~G~pi~i--------~GLWgL~fGng 308 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLD-----PDNHPVKV--------DGLWSLTFGNG 308 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecC-----CCCCeEEe--------cCeEEeeeCCC
Confidence 2466788888999999999998865543322 11223434 36668887754
No 98
>PRK04922 tolB translocation protein TolB; Provisional
Probab=62.23 E-value=1e+02 Score=33.26 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=34.8
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~ 342 (530)
.++|+.+|+.++++ +++.+.. .....+++. + +++..||.+.. +...|.++|+.+++..++.
T Consensus 315 ~~~iy~~dl~~g~~-~~lt~~g------~~~~~~~~S--p-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 315 RPQIYRVAASGGSA-ERLTFQG------NYNARASVS--P-DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred CceEEEEECCCCCe-EEeecCC------CCccCEEEC--C-CCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence 47899999988764 3344421 111233332 2 23445555433 3457999999988765444
No 99
>PRK05137 tolB translocation protein TolB; Provisional
Probab=61.54 E-value=1.1e+02 Score=32.88 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEec-CCCCeEEEEEccCCeE
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVND-VFRYGLIVYDFFKNTS 338 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItD-sg~~gLIVyDl~~g~s 338 (530)
+.++|+++|+.++++. ++... .......++- ++ ++..||.+. .+...|.++|+.++..
T Consensus 312 g~~~Iy~~d~~g~~~~-~lt~~------~~~~~~~~~S--pd-G~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 312 GSPQLYVMNADGSNPR-RISFG------GGRYSTPVWS--PR-GDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred CCCeEEEEECCCCCeE-EeecC------CCcccCeEEC--CC-CCEEEEEEcCCCceEEEEEECCCCce
Confidence 3467888888766553 33331 1122333332 11 334455553 3346789999876643
No 100
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=61.30 E-value=87 Score=32.62 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=18.1
Q ss_pred eeeEEeCCeEEEEccCCCCCCCcEEEEEECCC
Q psy11539 184 LGIGIWRSTIFLSFPKWKAGIPFTLASFNMND 215 (530)
Q Consensus 184 ~GV~v~~gRlFVTiPR~~~GvP~TLa~V~~~~ 215 (530)
.+..+.++++|+..-. | .|..++..+
T Consensus 59 ~~p~v~~~~v~v~~~~---g---~v~a~d~~t 84 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD---G---TVVALDAET 84 (377)
T ss_pred cceEEECCEEEEECCC---C---eEEEEEccC
Confidence 4566779999999632 3 687887543
No 101
>PRK02888 nitrous-oxide reductase; Validated
Probab=61.25 E-value=1.9e+02 Score=33.70 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=43.1
Q ss_pred CEEEEEECCC-----CcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEE
Q psy11539 273 PKIMVFDLKT-----NTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSY 339 (530)
Q Consensus 273 PKLvvfDL~T-----d~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~sw 339 (530)
-++.++|.++ -++++.+..|.. .-.+.+. .++.++|++--..+-+-|+|.++.+.|
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKs-------PHGV~vS----PDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKN-------PHGVNTS----PDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCC-------ccceEEC----CCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 4688888887 367777777554 4556665 368999999999999999999987655
No 102
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=60.79 E-value=2.2e+02 Score=29.80 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=41.7
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCc---------------------cccceEEEeecCCCCeEEEEecCCCCeEE
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGS---------------------LFSNIVTEVVEDCDHVFAYVNDVFRYGLI 329 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S---------------------~lndIvVDv~~~c~~~~AYItDsg~~gLI 329 (530)
-.-.+..+|++||+++.++..-+.+....+ .+|+|..+ .++...|+=-....|+
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~-----~~G~yLiS~R~~~~i~ 168 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKD-----DDGDYLISSRNTSTIY 168 (299)
T ss_pred ecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeec-----CCccEEEEecccCEEE
Confidence 344578889999999988876443322111 23444443 3444445544567999
Q ss_pred EEEccCCeE-EEEc
Q psy11539 330 VYDFFKNTS-YRLT 342 (530)
Q Consensus 330 VyDl~~g~s-wRv~ 342 (530)
++|.++|+. ||+.
T Consensus 169 ~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 169 KIDPSTGKIIWRLG 182 (299)
T ss_pred EEECCCCcEEEEeC
Confidence 999888765 7765
No 103
>PRK03629 tolB translocation protein TolB; Provisional
Probab=60.27 E-value=1.2e+02 Score=32.84 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=36.2
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCe-EEEEecC-CCCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHV-FAYVNDV-FRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~-~AYItDs-g~~gLIVyDl~~g~swRv~ 342 (530)
.+.|+++|+.+++......++.. ...+++. .++. .||+.+. +...|.++|+++++..++.
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~-------~~~~~~S----PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRH-------NGAPAFS----PDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCC-------cCCeEEC----CCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc
Confidence 36799999988875443334322 1233443 2344 4455453 3457999999999877665
No 104
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=59.35 E-value=16 Score=31.62 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=37.9
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCC
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKN 336 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g 336 (530)
+.--++=||.++-++ ++..-++.|.|.+| .++.++|+++..+..|.||...++
T Consensus 34 ~~~~Vvyyd~~~~~~---------va~g~~~aNGI~~s----~~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 34 PWGNVVYYDGKEVKV---------VASGFSFANGIAIS----PDKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred CCceEEEEeCCEeEE---------eeccCCCCceEEEc----CCCCEEEEEeccCCeEEEEEecCC
Confidence 445577777643221 22334677899998 357899999999999999987653
No 105
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=59.31 E-value=19 Score=31.11 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=29.3
Q ss_pred CeEEEEeCCCCccccCceeEEeecCCceeecceeEEecC-CcEEEEEeeceee
Q psy11539 478 HSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEE-KENTCTFLVNKYV 529 (530)
Q Consensus 478 ~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~d-G~lYv~~~snr~~ 529 (530)
..|..||+. + ..+++ +.+.+|+||.++.+ ..|||..+..+.|
T Consensus 36 ~~Vvyyd~~-~------~~~va---~g~~~aNGI~~s~~~k~lyVa~~~~~~I 78 (86)
T PF01731_consen 36 GNVVYYDGK-E------VKVVA---SGFSFANGIAISPDKKYLYVASSLAHSI 78 (86)
T ss_pred ceEEEEeCC-E------eEEee---ccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence 446666665 2 33444 36999999999975 5899988776554
No 106
>PRK05137 tolB translocation protein TolB; Provisional
Probab=58.85 E-value=2.6e+02 Score=30.08 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=35.7
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~ 342 (530)
.+.|+++|++++++.+ +.- . .......... + .+...||.+|. +...|.++|+.+++..|+.
T Consensus 269 ~~~Iy~~d~~~~~~~~-Lt~--~----~~~~~~~~~s--p-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 269 NTDIYTMDLRSGTTTR-LTD--S----PAIDTSPSYS--P-DGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CceEEEEECCCCceEE-ccC--C----CCccCceeEc--C-CCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 4678888887776532 211 1 1111122222 1 24567888875 4568999999888777765
No 107
>KOG0294|consensus
Probab=58.14 E-value=2.1e+02 Score=30.89 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=44.3
Q ss_pred CCCcceEEcCCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEeecee
Q psy11539 457 TQASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLVNKY 528 (530)
Q Consensus 457 sqs~G~aiD~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~snr~ 528 (530)
+|-.++++...|.|-.+--....+..||--++.- .+.+-.. ..+.-+.+...|.-|++.+.|++
T Consensus 128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~---a~v~~L~-----~~at~v~w~~~Gd~F~v~~~~~i 191 (362)
T KOG0294|consen 128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV---AFVLNLK-----NKATLVSWSPQGDHFVVSGRNKI 191 (362)
T ss_pred cccceeEecCCCceEEEEcCCceeeeehhhcCcc---ceeeccC-----CcceeeEEcCCCCEEEEEeccEE
Confidence 4788889999999999999999999999752211 1111111 12333777888888888888775
No 108
>PRK00178 tolB translocation protein TolB; Provisional
Probab=57.98 E-value=2e+02 Score=30.71 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCC-CCeEEEEEccCCeEEEEc
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF-RYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg-~~gLIVyDl~~g~swRv~ 342 (530)
+.+.|+++|++++++.+ +.-.. ......... + .++..+|.+|.. ...|.++|+.+++..|+.
T Consensus 265 g~~~Iy~~d~~~~~~~~-lt~~~------~~~~~~~~s--p-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 265 GNPEIYVMDLASRQLSR-VTNHP------AIDTEPFWG--K-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCceEEEEECCCCCeEE-cccCC------CCcCCeEEC--C-CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 34567777777765432 11101 111122222 1 134567777754 568999999999877765
No 109
>PRK04922 tolB translocation protein TolB; Provisional
Probab=57.43 E-value=2.8e+02 Score=29.92 Aligned_cols=60 Identities=20% Similarity=0.002 Sum_probs=35.9
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCe-EEEEecC-CCCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHV-FAYVNDV-FRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~-~AYItDs-g~~gLIVyDl~~g~swRv~ 342 (530)
.+.|+++|+++++..+.-.++. ....+++. .++. .+|..+. +...|.++|+.+++..++.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g-------~~~~~~~S----pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt 288 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRG-------INGAPSFS----PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT 288 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCC-------CccCceEC----CCCCEEEEEEeCCCCceEEEEECCCCCeEECc
Confidence 4779999998887543222321 11233443 2343 4555443 4467999999999776654
No 110
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=57.37 E-value=99 Score=31.63 Aligned_cols=124 Identities=12% Similarity=0.045 Sum_probs=68.0
Q ss_pred eeeEEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEEeCCCCCc
Q psy11539 184 LGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNI 263 (530)
Q Consensus 184 ~GV~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVLDtG~~~~ 263 (530)
.+++++++-|.|-.+.-...--..|+.++..+ |.. -..|+.. |.+ .++-...+ .||.|+++|+.....
T Consensus 126 iD~AvDE~GLWvIYat~~~~g~ivvskld~~t------L~v--~~tw~T~--~~k-~~~~naFm-vCGvLY~~~s~~~~~ 193 (250)
T PF02191_consen 126 IDFAVDENGLWVIYATEDNNGNIVVSKLDPET------LSV--EQTWNTS--YPK-RSAGNAFM-VCGVLYATDSYDTRD 193 (250)
T ss_pred EEEEEcCCCEEEEEecCCCCCcEEEEeeCccc------Cce--EEEEEec--cCc-hhhcceee-EeeEEEEEEECCCCC
Confidence 45555667777776665432225666666432 222 2233321 211 11111122 499999999876321
Q ss_pred ccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCC
Q psy11539 264 LSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKN 336 (530)
Q Consensus 264 ~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g 336 (530)
.---.+||+.+++... ..|+-. +.-..+..|--+ ..+..+|+=|.| -++.|++.-+
T Consensus 194 --------~~I~yafDt~t~~~~~-~~i~f~--~~~~~~~~l~YN----P~dk~LY~wd~G--~~v~Y~v~f~ 249 (250)
T PF02191_consen 194 --------TEIFYAFDTYTGKEED-VSIPFP--NPYGNISMLSYN----PRDKKLYAWDNG--YQVTYDVRFK 249 (250)
T ss_pred --------cEEEEEEECCCCceec-eeeeec--cccCceEeeeEC----CCCCeEEEEECC--eEEEEEEEec
Confidence 1225899999997642 333221 122334445444 357889999985 5788887643
No 111
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.17 E-value=2.7e+02 Score=29.69 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=42.2
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEe----cCCCCeEEEEEccCCeEEEEc
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVN----DVFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYIt----Dsg~~gLIVyDl~~g~swRv~ 342 (530)
--+++||..++++++++.-|+. -.|+---++. .++..+|.| +.+.+-|-|||... ...|+.
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~g----RHFyGHg~fs----~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~ 92 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPG----RHFYGHGVFS----PDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIG 92 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCC----CEEecCEEEc----CCCCEEEEeccccCCCcEEEEEEECcC-CcEEEe
Confidence 5699999999999987766543 2333334444 367899998 45667788999993 344443
No 112
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=56.72 E-value=72 Score=37.81 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=53.7
Q ss_pred CEEEEEECCCCcEEEEEECCCcccc-------------cCccccc-eEEEeecCCCCeEEEEecCCCCeEEEEEccCCeE
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVF-------------EGSLFSN-IVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTS 338 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~-------------~~S~lnd-IvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~s 338 (530)
-.|.++|++|++++=+..+....-. ....+.. ++.+ ++.+|++-..+.-|..||.++|+-
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~Ta------gglvF~~gt~d~~l~A~D~~tGk~ 714 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATA------GGLVFIGATQDNYLRAYDLSTGKE 714 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEc------CCEEEEEeCCCCEEEEEECCCCce
Confidence 4699999999999998888321000 0111233 4443 688999544557899999988864
Q ss_pred -EEEcCCC-CCcCCCcceee-ecCeEee
Q psy11539 339 -YRLTHPY-MYPEPTQSTYI-LDNLKFR 363 (530)
Q Consensus 339 -wRv~h~s-f~pdP~~~~f~-I~G~~f~ 363 (530)
|+..-+. ....| .+|. ++|+++-
T Consensus 715 lW~~~l~~~~~a~P--~tY~~~~GkQYV 740 (764)
T TIGR03074 715 LWKARLPAGGQATP--MTYMGKDGKQYV 740 (764)
T ss_pred eeEeeCCCCcccCC--EEEEecCCEEEE
Confidence 8887542 33333 2676 7787764
No 113
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=54.96 E-value=2.9e+02 Score=29.48 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=82.8
Q ss_pred CCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEE--eCCCCCcccCc
Q psy11539 190 RSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIM--DTGVTNILSSI 267 (530)
Q Consensus 190 ~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVL--DtG~~~~~~~~ 267 (530)
.||.=+.+..+. .+|++++..++. .|.- |+ .+....-.|+--+.++..|++|+- +.|-.
T Consensus 126 ~GR~kLNl~tM~----psL~~ld~~sG~---ll~q---~~---Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~------ 186 (305)
T PF07433_consen 126 SGRAKLNLDTMQ----PSLVYLDARSGA---LLEQ---VE---LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP------ 186 (305)
T ss_pred cCceecChhhcC----CceEEEecCCCc---eeee---ee---cCccccccceeeEEecCCCcEEEEEecCCCC------
Confidence 366666766655 378888754332 2211 00 111234568888899999999987 44432
Q ss_pred cccCCCEEEEEECCCCcEEEEEECCCccccc-CccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEE
Q psy11539 268 QQLCPPKIMVFDLKTNTLIRKYILPTAQVFE-GSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRL 341 (530)
Q Consensus 268 ~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~-~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv 341 (530)
...+|-|..++. ++.++-+.+|++.... ..+..+|+++ -++..+.+|=..++.+.+||..+|+.-..
T Consensus 187 -~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~----~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 187 -GDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAAD----RDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred -CccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEe----CCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 234565555554 4446777888776433 4677899998 24668999999999999999999955543
No 114
>PRK00178 tolB translocation protein TolB; Provisional
Probab=54.91 E-value=2.9e+02 Score=29.41 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEcC
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLTH 343 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~h 343 (530)
.++|+++|+.+++..+...++. .....++. ++ ++..||..+. +...|.++|+++++..++.+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g-------~~~~~~~S--pD-G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG-------LNGAPAWS--PD-GSKLAFVLSKDGNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC-------CcCCeEEC--CC-CCEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence 3679999999887654222221 11123332 21 3345666654 44689999999998777653
No 115
>PRK01742 tolB translocation protein TolB; Provisional
Probab=54.41 E-value=3.1e+02 Score=29.56 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=34.3
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEec-CCCCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVND-VFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItD-sg~~gLIVyDl~~g~swRv~ 342 (530)
.++|+++|+.+++....-.++.. ...+++. ++ +...||..+ .+...|.++|+.+++..++.
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~-------~~~~~wS--PD-G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGH-------NGAPAFS--PD-GSRLAFASSKDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCc-------cCceeEC--CC-CCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence 36799999988764332233221 1123333 21 234566654 34446888899888766654
No 116
>KOG0268|consensus
Probab=53.14 E-value=1.2e+02 Score=33.17 Aligned_cols=160 Identities=8% Similarity=0.082 Sum_probs=89.6
Q ss_pred cCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcC
Q psy11539 270 LCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPE 349 (530)
Q Consensus 270 ~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pd 349 (530)
-|+.+|-+||+..+.-++.+....+-+ ..+... .-++.+-.+-..+.+|++||++.++-
T Consensus 164 TcGe~i~IWD~~R~~Pv~smswG~Dti------~svkfN----pvETsILas~~sDrsIvLyD~R~~~P----------- 222 (433)
T KOG0268|consen 164 TCGEQIDIWDEQRDNPVSSMSWGADSI------SSVKFN----PVETSILASCASDRSIVLYDLRQASP----------- 222 (433)
T ss_pred ccCceeeecccccCCccceeecCCCce------eEEecC----CCcchheeeeccCCceEEEecccCCc-----------
Confidence 489999999999999998888765422 122222 12344444444568999999998822
Q ss_pred CCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecc
Q psy11539 350 PTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTT 429 (530)
Q Consensus 350 P~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~ 429 (530)
... . ...--.++|+.+|. .|.+.+ .+.+-. +|.-++.
T Consensus 223 -l~K-V-------i~~mRTN~IswnPe------------afnF~~------------a~ED~n----------lY~~DmR 259 (433)
T KOG0268|consen 223 -LKK-V-------ILTMRTNTICWNPE------------AFNFVA------------ANEDHN----------LYTYDMR 259 (433)
T ss_pred -cce-e-------eeeccccceecCcc------------ccceee------------cccccc----------ceehhhh
Confidence 211 1 11112356777663 354443 223344 4444555
Q ss_pred hhcCccccCCccccccceEEeccccCCCCCcceEEc--CCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCceee
Q psy11539 430 DLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAIN--SNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNF 507 (530)
Q Consensus 430 ~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD--~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~ 507 (530)
.|..+... ..|. -+.-|.+| .+|.=|++..-..+|..|+.+ ..-. +-|+. ..++|-
T Consensus 260 ~l~~p~~v-----------~~dh-----vsAV~dVdfsptG~EfvsgsyDksIRIf~~~-~~~S----RdiYh-tkRMq~ 317 (433)
T KOG0268|consen 260 NLSRPLNV-----------HKDH-----VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN-HGHS----RDIYH-TKRMQH 317 (433)
T ss_pred hhcccchh-----------hccc-----ceeEEEeccCCCcchhccccccceEEEeecC-CCcc----hhhhh-Hhhhhe
Confidence 55433210 0011 13334444 778888888878888888887 3221 23343 346666
Q ss_pred cceeEEec
Q psy11539 508 REEGEEEE 515 (530)
Q Consensus 508 Pd~l~Id~ 515 (530)
.-+++...
T Consensus 318 V~~Vk~S~ 325 (433)
T KOG0268|consen 318 VFCVKYSM 325 (433)
T ss_pred eeEEEEec
Confidence 66666643
No 117
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=53.12 E-value=3.5e+02 Score=29.85 Aligned_cols=55 Identities=7% Similarity=-0.128 Sum_probs=38.9
Q ss_pred CcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEee
Q psy11539 468 GVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLV 525 (530)
Q Consensus 468 G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~s 525 (530)
|.||++....-.+..-+++ +.+.....+.|.. +. -.-|-|++++.||.|||+.=.
T Consensus 332 ~~lfV~~hgsw~~~~~~~~-g~~~~~~~~fl~~-d~-~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 332 GDLFVGAHGSWPVLRLRPD-GNYKVVLTGFLSG-DL-GGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred CcEEEEeecceeEEEeccC-CCcceEEEEEEec-CC-CCcccceEECCCCeEEEeecC
Confidence 6899998888788888887 6543323344443 22 267889999999999986544
No 118
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=52.51 E-value=1.9e+02 Score=32.84 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=31.9
Q ss_pred CCCceEEEEEEEeC-CCcEEEEeCCCCCcccC------c-cccCCCEEEEEECCCC
Q psy11539 236 CNSLISVFRMSVDK-CDRLWIMDTGVTNILSS------I-QQLCPPKIMVFDLKTN 283 (530)
Q Consensus 236 c~~LvSV~rv~ID~-cgRLWVLDtG~~~~~~~------~-~~~c~PKLvvfDL~Td 283 (530)
+..|-..-+|.++. .++|||.-|........ + ....--+|+.|++..+
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~ 401 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGN 401 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCC
Confidence 45688888999988 58999998776522110 1 1123346999999876
No 119
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=52.17 E-value=1.2e+02 Score=32.01 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=42.6
Q ss_pred CceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCc-cccceEEEeecCCCCe
Q psy11539 238 SLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGS-LFSNIVTEVVEDCDHV 316 (530)
Q Consensus 238 ~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S-~lndIvVDv~~~c~~~ 316 (530)
.-.+++.|..++++.||++..|- .+.|.-..+ -......+..-.+..+ .+-|++.. .+.
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg--------------~~~~s~~~~-~~~~w~~~~~~~~~~~~~~ld~a~~-----~~~ 244 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGG--------------QIQFSDDPD-DGETWSEPIIPIKTNGYGILDLAYR-----PPN 244 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTT--------------EEEEEE-TT-EEEEE---B-TTSS--S-EEEEEES-----SSS
T ss_pred ccceehhceecCCCCEEEEeCCc--------------EEEEccCCC-CccccccccCCcccCceeeEEEEec-----CCC
Confidence 34678888999999999999885 222322111 1122222111111122 24555554 345
Q ss_pred EEEEecCCCCeEEEEEccCCeEEEEcC
Q psy11539 317 FAYVNDVFRYGLIVYDFFKNTSYRLTH 343 (530)
Q Consensus 317 ~AYItDsg~~gLIVyDl~~g~swRv~h 343 (530)
-+|+ ++..|.+.++.+.|++|....
T Consensus 245 ~~wa--~gg~G~l~~S~DgGktW~~~~ 269 (302)
T PF14870_consen 245 EIWA--VGGSGTLLVSTDGGKTWQKDR 269 (302)
T ss_dssp -EEE--EESTT-EEEESSTTSS-EE-G
T ss_pred CEEE--EeCCccEEEeCCCCccceECc
Confidence 6666 566788999999999999764
No 120
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=51.61 E-value=2.8e+02 Score=28.34 Aligned_cols=66 Identities=11% Similarity=-0.044 Sum_probs=39.6
Q ss_pred CCcceEEcCCCcEEEEccCC---CeEE-EEeCCCCccccCceeEEeecCCceeecceeEEe-cCCcEEEEEeece
Q psy11539 458 QASASAINSNGVMFYNLVTK---HSVG-CWNTKTKVYLPQTQDIVQTSRDILNFREEGEEE-EEKENTCTFLVNK 527 (530)
Q Consensus 458 qs~G~aiD~~G~LYft~~~~---~aI~-cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id-~dG~lYv~~~snr 527 (530)
+..|-++=-.|+||++.... ..|. .+|+.++.. +...+... ........|.-+ .|..||+|.--+.
T Consensus 171 ~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~--~~~~i~f~--~~~~~~~~l~YNP~dk~LY~wd~G~~ 241 (250)
T PF02191_consen 171 RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKE--EDVSIPFP--NPYGNISMLSYNPRDKKLYAWDNGYQ 241 (250)
T ss_pred hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCce--eceeeeec--cccCceEeeeECCCCCeEEEEECCeE
Confidence 45555666899999997754 5565 799883322 12333322 234444455554 4788999876544
No 121
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=51.41 E-value=1.5e+02 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCeEEEEecCC-CCeEEEEEccCCeEEEEc
Q psy11539 314 DHVFAYVNDVF-RYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 314 ~~~~AYItDsg-~~gLIVyDl~~g~swRv~ 342 (530)
+...+|.+|.+ ...|.++|+.+++..++.
T Consensus 289 g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 289 GKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318 (417)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 34566777753 468999999988766554
No 122
>KOG0279|consensus
Probab=50.17 E-value=2e+02 Score=30.55 Aligned_cols=140 Identities=10% Similarity=0.122 Sum_probs=81.7
Q ss_pred EEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcce
Q psy11539 275 IMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQST 354 (530)
Q Consensus 275 LvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~ 354 (530)
+-+|||.+=++...|.= ...+++.++|- .+|.+-++=--++.+..||++.++-.--+.+
T Consensus 174 vKvWnl~~~~l~~~~~g------h~~~v~t~~vS-----pDGslcasGgkdg~~~LwdL~~~k~lysl~a---------- 232 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTFIG------HSGYVNTVTVS-----PDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---------- 232 (315)
T ss_pred EEEEccCCcchhhcccc------ccccEEEEEEC-----CCCCEEecCCCCceEEEEEccCCceeEeccC----------
Confidence 55788866565543322 24566777775 4566555533356688899998854221110
Q ss_pred eeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhcCc
Q psy11539 355 YILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNS 434 (530)
Q Consensus 355 f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~ 434 (530)
.+-|+.++++|.. -||--.--+|.++|-..+...-.+
T Consensus 233 ----------~~~v~sl~fspnr---------------------------------ywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 233 ----------FDIVNSLCFSPNR---------------------------------YWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred ----------CCeEeeEEecCCc---------------------------------eeEeeccCCceEEEeccchhhhhh
Confidence 1235678888864 233333345667777666554321
Q ss_pred cccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEEEeCC
Q psy11539 435 SRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 435 s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~cWnt~ 486 (530)
+ ..++.-.+.+....++..++...+|.-.|+....+.|..|-..
T Consensus 270 -l-------~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 -L-------KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -c-------cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 1111111333334678888998888877777788889888643
No 123
>KOG0316|consensus
Probab=50.15 E-value=2.8e+02 Score=29.03 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccC
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFK 335 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~ 335 (530)
.-.+.+||..||+++|++.=... -.|.+++. ++.-+-++-+.+..+-+||-+.
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~a------qVNtV~fN-----eesSVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLA------QVNTVRFN-----EESSVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred CceEEEEEcccCeeeeecccccc------eeeEEEec-----CcceEEEeccccceeEEEEccc
Confidence 35699999999999998865332 24666665 4455555555566666666553
No 124
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.06 E-value=1.3e+02 Score=30.81 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=65.1
Q ss_pred cCCCcccCCCceeeeEEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceE----EEEEEE
Q psy11539 172 RSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLIS----VFRMSV 247 (530)
Q Consensus 172 ~sg~Yip~n~iP~GV~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvS----V~rv~I 247 (530)
.|....|.+..-.|+..+++++|+-. |+.||.+. ++.++-++- .-.+|+...|--..+.++|+- .+=...
T Consensus 82 ~s~~l~~~~~FgEGit~~gd~~y~LT--w~egvaf~---~d~~t~~~l-g~~~y~GeGWgLt~d~~~LimsdGsatL~fr 155 (262)
T COG3823 82 FSEKLAPDTVFGEGITKLGDYFYQLT--WKEGVAFK---YDADTLEEL-GRFSYEGEGWGLTSDDKNLIMSDGSATLQFR 155 (262)
T ss_pred EEeecCCccccccceeeccceEEEEE--eccceeEE---EChHHhhhh-cccccCCcceeeecCCcceEeeCCceEEEec
Confidence 34444455666789999999999765 99998655 232211111 124788877753222222211 111111
Q ss_pred eC-----CCcEEEEeCCCCCcccC----------ccccCCCEEEEEECCCCcEEEEEEC
Q psy11539 248 DK-----CDRLWIMDTGVTNILSS----------IQQLCPPKIMVFDLKTNTLIRKYIL 291 (530)
Q Consensus 248 D~-----cgRLWVLDtG~~~~~~~----------~~~~c~PKLvvfDL~Td~li~~y~~ 291 (530)
|+ .+++=|.|-|++-..-+ ...-..-.|+.+|..+|+++..|++
T Consensus 156 dP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 156 DPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred CHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence 22 34555666665322100 0112557799999999999999998
No 125
>KOG0286|consensus
Probab=47.95 E-value=3.5e+02 Score=29.06 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=57.1
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCC
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEP 350 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP 350 (530)
|-..-.+||++.+.-+++|+-. .|=+|.+.+- ..+++|.|=+.....-.||++.+..--+-. +++
T Consensus 207 cD~~aklWD~R~~~c~qtF~gh------esDINsv~ff-----P~G~afatGSDD~tcRlyDlRaD~~~a~ys----~~~ 271 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGH------ESDINSVRFF-----PSGDAFATGSDDATCRLYDLRADQELAVYS----HDS 271 (343)
T ss_pred cccceeeeeccCcceeEeeccc------ccccceEEEc-----cCCCeeeecCCCceeEEEeecCCcEEeeec----cCc
Confidence 6677888999888888766553 3456778876 578899998888889999999986654332 111
Q ss_pred CcceeeecCeEeeecCCccceecCCCc
Q psy11539 351 TQSTYILDNLKFRWVDGIFGMAISPEL 377 (530)
Q Consensus 351 ~~~~f~I~G~~f~~~dGi~GIALsp~~ 377 (530)
-.-|+.++++|..|
T Consensus 272 -------------~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 272 -------------IICGITSVAFSKSG 285 (343)
T ss_pred -------------ccCCceeEEEcccc
Confidence 11278899999876
No 126
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=46.56 E-value=75 Score=34.95 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=37.9
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEcC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLTH 343 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~h 343 (530)
|+|+..|+++++-.+...++.... .-.+.-| +...||..+- +...|+|+|+.++..+|+.+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~-----~P~fspD-----G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~ 279 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG-----APAFSPD-----GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN 279 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC-----CccCCCC-----CCEEEEEECCCCCccEEEEcCCCCcceeccc
Confidence 788888888886555445432211 1111112 3456666654 56789999999998887554
No 127
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.27 E-value=95 Score=33.17 Aligned_cols=151 Identities=9% Similarity=0.092 Sum_probs=91.4
Q ss_pred hhhcCCCcccCCCceeeeEEe-CCeEEEEcc-------CCCC------CCCcEEEEEECCCCCCCCccCCCCCCCcCCCC
Q psy11539 169 NLIRSNKFIPENNLPLGIGIW-RSTIFLSFP-------KWKA------GIPFTLASFNMNDPSESPILLPYPNWSYFDDS 234 (530)
Q Consensus 169 ~ai~sg~Yip~n~iP~GV~v~-~gRlFVTiP-------R~~~------GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~ 234 (530)
...+.|+|---..=|..+... +||+.|-.- -+.. .--.+|..++..+++ +| +-|..+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~---li------ekh~Lp 220 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN---LI------EKHTLP 220 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc---hh------hhccCc
Confidence 344667766555567777764 777776531 1100 001244444422221 11 111222
Q ss_pred CCCCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCccccc-CccccceEEEeecCC
Q psy11539 235 NCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFE-GSLFSNIVTEVVEDC 313 (530)
Q Consensus 235 nc~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~-~S~lndIvVDv~~~c 313 (530)
......|+--+.+|.+|++|+-=.=+ |. ..--|-||+.-.+ ++-+.-+++|+++... ..++..|++..
T Consensus 221 ~~l~~lSiRHld~g~dgtvwfgcQy~----G~--~~d~ppLvg~~~~-g~~l~~~~~pee~~~~~anYigsiA~n~---- 289 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGTVWFGCQYR----GP--RNDLPPLVGHFRK-GEPLEFLDLPEEQTAAFANYIGSIAANR---- 289 (366)
T ss_pred hhhhhcceeeeeeCCCCcEEEEEEee----CC--CccCCcceeeccC-CCcCcccCCCHHHHHHHHhhhhheeecc----
Confidence 23456789999999999999853321 11 1233567777664 4566667888886443 45677888873
Q ss_pred CCeEEEEecCCCCeEEEEEccCCeEE
Q psy11539 314 DHVFAYVNDVFRYGLIVYDFFKNTSY 339 (530)
Q Consensus 314 ~~~~AYItDsg~~gLIVyDl~~g~sw 339 (530)
+++.+=+|-..++..++||.++|+..
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 56888888888899999999999443
No 128
>KOG0266|consensus
Probab=46.21 E-value=3.1e+02 Score=30.03 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=38.6
Q ss_pred CCcceEEcCCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCcEEEEEeece
Q psy11539 458 QASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKENTCTFLVNK 527 (530)
Q Consensus 458 qs~G~aiD~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~lYv~~~snr 527 (530)
.-..+++...|++.++--....|..||..++.. .+.+..-.+ ...++.+..+|.+.+...+++
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~----~~~l~~hs~---~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC----VRKLKGHSD---GISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCeE----EEeeeccCC---ceEEEEECCCCCEEEEcCCCc
Confidence 456678888889999999999999999993222 333332122 333455555554444443333
No 129
>KOG1273|consensus
Probab=46.20 E-value=4.3e+02 Score=28.79 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=42.3
Q ss_pred EEcCCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCc-eeecceeEEecCCcEEEEEeeceee
Q psy11539 463 AINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDI-LNFREEGEEEEEKENTCTFLVNKYV 529 (530)
Q Consensus 463 aiD~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~-L~~Pd~l~Id~dG~lYv~~~snr~~ 529 (530)
.+|+.|...++...++.+..+|.. ++++++.=..+ .+=...+.+...|.-.+.-.++|.+
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~-------t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAE-------TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecc-------hheeeeeeeechheeeeEEEEeccCcEEEEecCCceE
Confidence 788999999999999999999988 34455521111 1334456677788878877787765
No 130
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.14 E-value=68 Score=35.17 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=80.9
Q ss_pred CceEEEEEEEeCCC-cEEEE-eCCCCCcccCccccCCCEEEEEECCCCc--EEEEEEC--CC-ccc-------ccCcccc
Q psy11539 238 SLISVFRMSVDKCD-RLWIM-DTGVTNILSSIQQLCPPKIMVFDLKTNT--LIRKYIL--PT-AQV-------FEGSLFS 303 (530)
Q Consensus 238 ~LvSV~rv~ID~cg-RLWVL-DtG~~~~~~~~~~~c~PKLvvfDL~Td~--li~~y~~--P~-~v~-------~~~S~ln 303 (530)
.++---++..|..+ +.|+| |.|+.....+.-..--+-.+.+|..+++ ++..+.| |. .+. ..+..+.
T Consensus 67 p~~G~Sgi~~d~~~~~f~~lSDng~g~K~nS~dy~l~l~~~~~~~~~g~v~~~~~~~L~Dp~~k~pf~i~~~~~~~ralt 146 (391)
T COG4222 67 PVGGFSGITYDPQGDGYWALSDNGRGSKLNSRDYTLRLYRLGIDFGNGKVTPLDTTFLSDPNKKTPFPITGEDPEGRALT 146 (391)
T ss_pred CCCceeeeEEccCCCeEEEEeCCCcccccCccceEEEccccccccCCcceEEeEEEEeecCCCCCCccccccCchhhccc
Confidence 34556778889987 69988 8887543221111011111222233443 4444445 22 011 1122333
Q ss_pred ceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCC--CCCcCCCcceeeecCeEeeecCCccceecCCCc-ccc
Q psy11539 304 NIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHP--YMYPEPTQSTYILDNLKFRWVDGIFGMAISPEL-SGY 380 (530)
Q Consensus 304 dIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~--sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~-~~~ 380 (530)
.--.|+.. -..+||.|...+.|+.+|.. |+.-++..- -+.+ +. +...++..-|.-|||++|++ -.|
T Consensus 147 ~~d~~~~s---~~~~~igdefgP~l~~f~~~-Gk~~~~~~~~~~~~~-~~------~p~g~~~n~gfEglait~d~~~L~ 215 (391)
T COG4222 147 PADFDVES---SQGAWIGDEFGPYLLEFDAN-GKLVRVLEVPVRFLP-PD------NPKGLRNNLGFEGLAITPDGKKLY 215 (391)
T ss_pred CCCcceee---ccccccccccCcceEEECCC-CccccccccccccCc-CC------CccccccccceeeEEecCCCceEE
Confidence 32223221 12238999999999999999 655554421 1222 22 11223334467799999975 001
Q ss_pred cccCCCcccccccccccCCccccccccCCCceEEEEeCCCCee
Q psy11539 381 KYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRH 423 (530)
Q Consensus 381 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~l 423 (530)
-.++|+ +..++...+-+...--|.|+|-.-+...+
T Consensus 216 ~~le~~--------l~~d~~~~d~~~~~~lRil~~d~~~~~~~ 250 (391)
T COG4222 216 ALLEGA--------LAQDGNKADPTGGSPLRILEYDLATKQWT 250 (391)
T ss_pred EEEecc--------ccccccccCcccccceEEEEEecccCccc
Confidence 111211 22223332223333457788876666555
No 131
>KOG1446|consensus
Probab=45.12 E-value=4.2e+02 Score=28.39 Aligned_cols=182 Identities=10% Similarity=0.149 Sum_probs=102.9
Q ss_pred EEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcc
Q psy11539 274 KIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQS 353 (530)
Q Consensus 274 KLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~ 353 (530)
.|--.+|.+++.+|.+.=.. -..+.|.+ |...-.||+=+.+..|-.||++..+-.-+++-.-.| ..
T Consensus 81 tIryLsl~dNkylRYF~GH~------~~V~sL~~-----sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p---i~ 146 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHK------KRVNSLSV-----SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP---IA 146 (311)
T ss_pred ceEEEEeecCceEEEcCCCC------ceEEEEEe-----cCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc---ce
Confidence 37777888889888433221 22344444 455578899888889999999966555554432111 11
Q ss_pred eeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhcC
Q psy11539 354 TYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRN 433 (530)
Q Consensus 354 ~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn 433 (530)
.|.=.|.-|..--|-..|-|... ..+-+-|-.+|.+.......- ..++-+.+|+.|-.+...|. +|.|+.
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~---Rs~dkgPF~tf~i~~~~~~ew-~~l~FS~dGK~iLlsT~~s~-~~~lDA----- 216 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDL---RSFDKGPFTTFSITDNDEAEW-TDLEFSPDGKSILLSTNASF-IYLLDA----- 216 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEe---cccCCCCceeEccCCCCccce-eeeEEcCCCCEEEEEeCCCc-EEEEEc-----
Confidence 22223333333222223444322 234455766776664211111 24556778888777777775 555542
Q ss_pred ccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEEEeCC
Q psy11539 434 SSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 434 ~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~cWnt~ 486 (530)
+ ++.....|... .+.+.-+.+..+-.+|...++-...+.|..|+.+
T Consensus 217 --f---~G~~~~tfs~~--~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 217 --F---DGTVKSTFSGY--PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred --c---CCcEeeeEeec--cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 1 12233333332 2212234556677889899999999999999987
No 132
>KOG0279|consensus
Probab=44.88 E-value=4.1e+02 Score=28.29 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=40.0
Q ss_pred CEEEEEECCCC-----cEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEc
Q psy11539 273 PKIMVFDLKTN-----TLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 273 PKLvvfDL~Td-----~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~ 342 (530)
-++++|+|..+ ..+|++.=. ..+.+++++- .++.-.++=+.+.-|-.||+.+|+..|..
T Consensus 38 k~ii~W~L~~dd~~~G~~~r~~~GH------sH~v~dv~~s-----~dg~~alS~swD~~lrlWDl~~g~~t~~f 101 (315)
T KOG0279|consen 38 KTIIVWKLTSDDIKYGVPVRRLTGH------SHFVSDVVLS-----SDGNFALSASWDGTLRLWDLATGESTRRF 101 (315)
T ss_pred eEEEEEEeccCccccCceeeeeecc------ceEecceEEc-----cCCceEEeccccceEEEEEecCCcEEEEE
Confidence 35888888765 334444331 3466777775 45555677778889999999998777654
No 133
>KOG4649|consensus
Probab=44.66 E-value=4.2e+02 Score=28.25 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=19.5
Q ss_pred CCccccccccCCCceEEEEeCCCCeeEEEe
Q psy11539 398 NGTNVDKTIRDDQRYMYFHSMSSNRHYYVS 427 (530)
Q Consensus 398 ~~~~~~~~~~~~~r~LYf~plsS~~lY~V~ 427 (530)
+++-+.=.|..+...||++.+++. +.+|.
T Consensus 135 G~~f~sP~i~~g~~sly~a~t~G~-vlavt 163 (354)
T KOG4649|consen 135 GGTFVSPVIAPGDGSLYAAITAGA-VLAVT 163 (354)
T ss_pred CceeccceecCCCceEEEEeccce-EEEEc
Confidence 333333345677789999999886 66664
No 134
>KOG0643|consensus
Probab=44.43 E-value=1.8e+02 Score=30.91 Aligned_cols=83 Identities=10% Similarity=0.092 Sum_probs=50.5
Q ss_pred EEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC
Q psy11539 244 RMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV 323 (530)
Q Consensus 244 rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs 323 (530)
+.+--..|-+|.+|.-.-... --.-..--.+..||-+||+.+.++.++..+ . ++|.. -|+.-.++++|-
T Consensus 46 Gty~GHtGavW~~Did~~s~~-liTGSAD~t~kLWDv~tGk~la~~k~~~~V-------k--~~~F~-~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDSKH-LITGSADQTAKLWDVETGKQLATWKTNSPV-------K--RVDFS-FGGNLILASTDK 114 (327)
T ss_pred eeecCCCceEEEEEecCCcce-eeeccccceeEEEEcCCCcEEEEeecCCee-------E--EEeec-cCCcEEEEEehh
Confidence 333344566777776431100 000112345788999999999999996643 1 22221 257778899997
Q ss_pred C---CCeEEEEEccCCe
Q psy11539 324 F---RYGLIVYDFFKNT 337 (530)
Q Consensus 324 g---~~gLIVyDl~~g~ 337 (530)
. ...|-|||++...
T Consensus 115 ~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDS 131 (327)
T ss_pred hcCcceEEEEEEccCCh
Confidence 4 3568899998554
No 135
>KOG2048|consensus
Probab=44.08 E-value=6e+02 Score=29.94 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=43.6
Q ss_pred CEEEEEECCCCcEEEEEECCCccccc----CccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeE-EEEcCCCCC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFE----GSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTS-YRLTHPYMY 347 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~----~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~s-wRv~h~sf~ 347 (530)
-+|.-|||.+.+.+..++.-....-. .+. ..+.| +|++|.+|+-+.+ ++.|-|+.--++. =|++.-++.
T Consensus 90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~I----gcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAI----GCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred ceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEe----ecCCceEEEEecC-CceEEEEeecccccceEEEEEec
Confidence 56999999999888777763332111 000 23334 5999999988866 4556565444433 466655555
Q ss_pred cC
Q psy11539 348 PE 349 (530)
Q Consensus 348 pd 349 (530)
++
T Consensus 164 ~~ 165 (691)
T KOG2048|consen 164 PT 165 (691)
T ss_pred CC
Confidence 54
No 136
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=43.68 E-value=4e+02 Score=27.80 Aligned_cols=61 Identities=23% Similarity=0.140 Sum_probs=36.4
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC-CCCeEEEEEccCCeEEEEcC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV-FRYGLIVYDFFKNTSYRLTH 343 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs-g~~gLIVyDl~~g~swRv~h 343 (530)
+.|++||+.+++..+.-.++.. ...+++. ++ +..++|..+. +...|.++|+.++...++.+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-------~~~~~~s--pD-g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-------NGAPAFS--PD-GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-------ccceEEC--CC-CCEEEEEECCCCCccEEEEECCCCCEEECCC
Confidence 6799999998876543333211 1223443 11 2345565554 34579999999887776653
No 137
>KOG0289|consensus
Probab=43.61 E-value=3.1e+02 Score=30.79 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=37.2
Q ss_pred CCcceEEcCCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCceeecceeEEecCCc
Q psy11539 458 QASASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEEEEEKE 518 (530)
Q Consensus 458 qs~G~aiD~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~Id~dG~ 518 (530)
.-..+.+.+||.-..+..+...|.|||-. + -+|+..+..++ ..=..++.+|..|.
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLR-K---l~n~kt~~l~~--~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLR-K---LKNFKTIQLDE--KKEVNSLSFDQSGT 445 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEeh-h---hcccceeeccc--cccceeEEEcCCCC
Confidence 45667888999777778888889999998 4 23666666433 11345666666554
No 138
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=43.30 E-value=73 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.9
Q ss_pred CEEEEEECCCCcEEEEEECCCc
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTA 294 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~ 294 (530)
-.|+++|++||+++=+|.....
T Consensus 10 g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp SEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEEECCCCCEEEeeeCCCC
Confidence 4699999999999999988654
No 139
>KOG0271|consensus
Probab=42.84 E-value=5.2e+02 Score=28.81 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=117.0
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEee---cCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVV---EDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPE 349 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~---~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pd 349 (530)
-.|..||.++|+.+-+ .|+.. .-.+..|+-..- +.|. ...+-+.++.+.|||...++.-+.+.....|-
T Consensus 179 g~I~lwdpktg~~~g~-~l~gH----~K~It~Lawep~hl~p~~r---~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGR-ALRGH----KKWITALAWEPLHLVPPCR---RLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred CeEEEecCCCCCcccc-cccCc----ccceeEEeecccccCCCcc---ceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 4599999999976532 22221 234556665432 2455 33344456778888888887777664322111
Q ss_pred CCcceeeecCeEee-----------e--cC------------CccceecCCCc---------ccccccCCCcccc-----
Q psy11539 350 PTQSTYILDNLKFR-----------W--VD------------GIFGMAISPEL---------SGYKYKRHPYEYY----- 390 (530)
Q Consensus 350 P~~~~f~I~G~~f~-----------~--~d------------Gi~GIALsp~~---------~~~~~~~~~~~~y----- 390 (530)
.-+.-+|+.+. | .+ +|+.|||+-+- .|.+++ .++|.=
T Consensus 251 ---TCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~-~~se~~~~Al~ 326 (480)
T KOG0271|consen 251 ---TCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK-SFSEEQKKALE 326 (480)
T ss_pred ---EEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC-ChHHHHHHHHH
Confidence 00111222221 1 12 47889998431 122221 121110
Q ss_pred cccccccCCccccccccCCCceEEEEeCCCCe----e-----------EEEecchhcCccccCCccccccceEEe-cccc
Q psy11539 391 HYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNR----H-----------YYVSTTDLRNSSRYVNSSDIDEYFHYL-GSRF 454 (530)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~----l-----------Y~V~T~~Lrn~s~~~~~~~~~~~v~~l-G~rG 454 (530)
.|.+.-.+..+-+..-++++...-|.|..+.+ + |+=+..++... ...+.|+++ |..|
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa-------SFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA-------SFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe-------ecccceeeeeCCCc
Confidence 34444444333333346676667777777762 1 11122222222 234677777 5555
Q ss_pred CC-CCCc-------ceEEcCCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCc--eee-cceeEEecCC
Q psy11539 455 KN-TQAS-------ASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDI--LNF-REEGEEEEEK 517 (530)
Q Consensus 455 ~~-sqs~-------G~aiD~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~--L~~-Pd~l~Id~dG 517 (530)
+. +.-. -+++..+.+|.++-.....+-.|+..++.+. +++....++- .-| |||-+|.+.|
T Consensus 400 k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~---~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 400 KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK---QDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec---ccCCCCCceEEEEEecCCCceeecCC
Confidence 43 1111 1356678889999999999999999866552 4455444443 233 6776665544
No 140
>KOG0973|consensus
Probab=42.82 E-value=3e+02 Score=33.66 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred EEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcc
Q psy11539 274 KIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQS 353 (530)
Q Consensus 274 KLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~ 353 (530)
++++||.+|-+.++++.=.. ++...+.+| .-|--+-+-+.+..|.||...+ |-+.|-...|-..
T Consensus 152 sViiwn~~tF~~~~vl~~H~------s~VKGvs~D-----P~Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~-- 215 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQ------SLVKGVSWD-----PIGKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEE-- 215 (942)
T ss_pred eEEEEccccceeeeeeeccc------ccccceEEC-----CccCeeeeecCCceEEEEEccc---ceeeEeeccchhh--
Q ss_pred eeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEecchhcC
Q psy11539 354 TYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRN 433 (530)
Q Consensus 354 ~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn 433 (530)
..+.+|-++ +.-||+| .|.-..|..++.-.-+.|-..+.|=+=..|-+++= ++.+++=
T Consensus 216 ---~~~~T~f~R-----lSWSPDG-----------~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~---p~evvrF 273 (942)
T KOG0973|consen 216 ---SPLTTFFLR-----LSWSPDG-----------HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA---PVEVVRF 273 (942)
T ss_pred ---CCCcceeee-----cccCCCc-----------CeecchhhccCCcceeEEEecCCceeeeeeecCCC---ceEEEEe
Q ss_pred ccccCCccccccceEEeccccCCCCCc----ceEEcCCCcEEEEccCCCeEEEEeCCCCccccCceeEEeecCCc-eee-
Q psy11539 434 SSRYVNSSDIDEYFHYLGSRFKNTQAS----ASAINSNGVMFYNLVTKHSVGCWNTKTKVYLPQTQDIVQTSRDI-LNF- 507 (530)
Q Consensus 434 ~s~~~~~~~~~~~v~~lG~rG~~sqs~----G~aiD~~G~LYft~~~~~aI~cWnt~~~~~~~~n~~lV~~d~~~-L~~- 507 (530)
... -|+.--..|..+|+. -+|+-++. .+|..|++. .+----...-|....-. |.|
T Consensus 274 nP~---------lfe~~~~ng~~~~~~~~y~i~AvgSqD---------rSlSVW~T~-~~RPl~vi~~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 274 NPK---------LFERNNKNGTSTQPNCYYCIAAVGSQD---------RSLSVWNTA-LPRPLFVIHNLFNKSIVDMSWS 334 (942)
T ss_pred ChH---------HhccccccCCccCCCcceEEEEEecCC---------ccEEEEecC-CCCchhhhhhhhcCceeeeeEc
Q ss_pred cceeEE---ecCCcEEEEEeece
Q psy11539 508 REEGEE---EEEKENTCTFLVNK 527 (530)
Q Consensus 508 Pd~l~I---d~dG~lYv~~~snr 527 (530)
|||+.. .-||.|++......
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchH
No 141
>KOG0315|consensus
Probab=42.26 E-value=4.4e+02 Score=27.84 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=39.1
Q ss_pred ccCCCEEEEEECCCCc--EEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCC
Q psy11539 269 QLCPPKIMVFDLKTNT--LIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKN 336 (530)
Q Consensus 269 ~~c~PKLvvfDL~Td~--li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g 336 (530)
..|-|+|-.||+.+++ -+.+|+.+.. ....+.+. |++...|- -+.++.+-|||++.=
T Consensus 57 aa~~qhvRlyD~~S~np~Pv~t~e~h~k------NVtaVgF~----~dgrWMyT-gseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 57 AAGNQHVRLYDLNSNNPNPVATFEGHTK------NVTAVGFQ----CDGRWMYT-GSEDGTVKIWDLRSL 115 (311)
T ss_pred hccCCeeEEEEccCCCCCceeEEeccCC------ceEEEEEe----ecCeEEEe-cCCCceEEEEeccCc
Confidence 3578999999999975 6788887632 12333444 67777664 445667889999873
No 142
>KOG3000|consensus
Probab=40.81 E-value=27 Score=36.81 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCCccchhhhhcccccccceeeccccccCccc
Q psy11539 30 NPNFVDWEKELFNTNYTNNFLNVDLKKLRPQS 61 (530)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (530)
|=.|..|=|++|+.||+. .+.|-...|--.
T Consensus 104 NlEF~qWfkkffd~~~~g--~~yd~~~~R~~~ 133 (295)
T KOG3000|consen 104 NLEFLQWFKKFFDANYGG--KGYDALARREGI 133 (295)
T ss_pred hHHHHHHHHHHhhccCCc--cccCHHHHhhcc
Confidence 446889999999999999 777766655433
No 143
>PRK02889 tolB translocation protein TolB; Provisional
Probab=38.85 E-value=4.4e+02 Score=28.42 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCC-CCeEEEEEccCCeEEEEc
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF-RYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg-~~gLIVyDl~~g~swRv~ 342 (530)
+.++|+.+|+.+++.. ++.+.. .......+. + .++..||.+..+ ...|.++|+.+++..++.
T Consensus 306 g~~~Iy~~~~~~g~~~-~lt~~g------~~~~~~~~S--p-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 306 GAPQIYRMPASGGAAQ-RVTFTG------SYNTSPRIS--P-DGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred CCcEEEEEECCCCceE-EEecCC------CCcCceEEC--C-CCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 3467888888776543 333322 111223332 2 144567777543 457999999998766554
No 144
>PRK02889 tolB translocation protein TolB; Provisional
Probab=38.39 E-value=5.4e+02 Score=27.74 Aligned_cols=61 Identities=18% Similarity=0.008 Sum_probs=35.3
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEec-CCCCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVND-VFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItD-sg~~gLIVyDl~~g~swRv~ 342 (530)
.+.|+++|+.+++..+.-.++.. ....++. ++ +...||..+ .+...|.++|+.++...++.
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~-------~~~~~~S--PD-G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGS-------NSAPAWS--PD-GRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCC-------ccceEEC--CC-CCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 37799999998876543233221 1123332 21 234555544 45567999999888766654
No 145
>smart00284 OLF Olfactomedin-like domains.
Probab=37.75 E-value=4.9e+02 Score=27.04 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=45.1
Q ss_pred CCcEEEEeC-CCCCcccCccccCCCEEEEE----ECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCC
Q psy11539 250 CDRLWIMDT-GVTNILSSIQQLCPPKIMVF----DLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVF 324 (530)
Q Consensus 250 cgRLWVLDt-G~~~~~~~~~~~c~PKLvvf----DL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg 324 (530)
.++.||+|. +.. ...|..| |+..++.-++|.||... .+ ++-+|- ++.+|..=.+
T Consensus 34 ~~~~wv~~~~~~~----------~~~v~ey~~~~~f~~~~~~~~~~Lp~~~--~G---tG~VVY------ngslYY~~~~ 92 (255)
T smart00284 34 KSLYWYMPLNTRV----------LRSVREYSSMSDFQMGKNPTDHPLPHAG--QG---TGVVVY------NGSLYFNKFN 92 (255)
T ss_pred CceEEEEccccCC----------CcEEEEecCHHHHhccCCceEEECCCcc--cc---ccEEEE------CceEEEEecC
Confidence 578999874 211 1224444 33455666778887632 12 223443 4788887777
Q ss_pred CCeEEEEEccCCeE--EEEc
Q psy11539 325 RYGLIVYDFFKNTS--YRLT 342 (530)
Q Consensus 325 ~~gLIVyDl~~g~s--wRv~ 342 (530)
...||.||+.+++. ++++
T Consensus 93 s~~iiKydL~t~~v~~~~~L 112 (255)
T smart00284 93 SHDICRFDLTTETYQKEPLL 112 (255)
T ss_pred CccEEEEECCCCcEEEEEec
Confidence 88999999999976 4544
No 146
>KOG0282|consensus
Probab=37.62 E-value=1.7e+02 Score=32.91 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=37.9
Q ss_pred EEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCe
Q psy11539 275 IMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT 337 (530)
Q Consensus 275 LvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~ 337 (530)
|-.||.+||+++.++.+..- +..+-.. .++..++++=.....|+-||.++|+
T Consensus 282 lKlwDtETG~~~~~f~~~~~-------~~cvkf~----pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKV-------PTCVKFH----PDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred eeeeccccceEEEEEecCCC-------ceeeecC----CCCCcEEEEecCCCcEEEEeccchH
Confidence 56799999999999988332 2222222 1345778887778899999999996
No 147
>KOG1539|consensus
Probab=37.14 E-value=2.4e+02 Score=33.91 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=37.7
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEc
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~ 342 (530)
.-+|++|+++.|+++..+..+...+ .++.+- .++..+-.+=...+-+.+||+++.+..-+.
T Consensus 223 ~G~ViifNlK~dkil~sFk~d~g~V------tslSFr----tDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 223 NGTVIIFNLKFDKILMSFKQDWGRV------TSLSFR----TDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred CceEEEEEcccCcEEEEEEccccce------eEEEec----cCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 4679999999999999998864333 333332 122232222222234999999988765554
No 148
>KOG2110|consensus
Probab=36.73 E-value=6.1e+02 Score=27.91 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=37.8
Q ss_pred CCcceEEcCCCcEEEEccCCCeEE-EEeCCCCccccCceeEEee-cCCc-eeecceeEEecCCcEEEEEeec
Q psy11539 458 QASASAINSNGVMFYNLVTKHSVG-CWNTKTKVYLPQTQDIVQT-SRDI-LNFREEGEEEEEKENTCTFLVN 526 (530)
Q Consensus 458 qs~G~aiD~~G~LYft~~~~~aI~-cWnt~~~~~~~~n~~lV~~-d~~~-L~~Pd~l~Id~dG~lYv~~~sn 526 (530)
.-..++++.+|.|--+..+++.|. .+... +-..+++ +.+. ..=--.|+++.++. |+.|.||
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~-------~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~ 238 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVP-------EGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSN 238 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcC-------CccEeeeeeCCceeeEEEEEEECCCCC-eEEEecC
Confidence 467789999999999999988876 45544 2223331 1211 22223567777765 7777776
No 149
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=36.29 E-value=2.1e+02 Score=30.85 Aligned_cols=85 Identities=9% Similarity=-0.043 Sum_probs=52.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEec
Q psy11539 243 FRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVND 322 (530)
Q Consensus 243 ~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItD 322 (530)
.+++.+...--||-=.|..+..+.=+....-.=+++|..+++++. ..-++....+.. ++.+|+.|
T Consensus 155 NGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~---------~GLsmPhSPRWh------dgrLwvld 219 (335)
T TIGR03032 155 NGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVA---------SGLSMPHSPRWY------QGKLWLLN 219 (335)
T ss_pred cceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEE---------cCccCCcCCcEe------CCeEEEEE
Confidence 344555545566665555443321111111122447888887662 223555556664 78999999
Q ss_pred CCCCeEEEEEccCCeEEEEc
Q psy11539 323 VFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 323 sg~~gLIVyDl~~g~swRv~ 342 (530)
++.+.|+.+|.++|+.-.|.
T Consensus 220 sgtGev~~vD~~~G~~e~Va 239 (335)
T TIGR03032 220 SGRGELGYVDPQAGKFQPVA 239 (335)
T ss_pred CCCCEEEEEcCCCCcEEEEE
Confidence 99999999999999666554
No 150
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=36.00 E-value=2.9e+02 Score=28.94 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=77.3
Q ss_pred ceEEEEEEEeCCCcEEEEeCCCCCc--ccC--------ccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEE
Q psy11539 239 LISVFRMSVDKCDRLWIMDTGVTNI--LSS--------IQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTE 308 (530)
Q Consensus 239 LvSV~rv~ID~cgRLWVLDtG~~~~--~~~--------~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVD 308 (530)
.+...++---....+++++.+.... ... ....-.-+|.++|+++++.. .+.+|........++..+.--
T Consensus 114 ~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~ 192 (353)
T PF00930_consen 114 YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWS 192 (353)
T ss_dssp EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEE
T ss_pred EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceec
Confidence 3444444444456788888776532 110 01113347888999888765 345543333334444333321
Q ss_pred eecCCCCe-EEEEe-cC--CCCeEEEEEccCCeEEEEcC---CCCCcCCCcceeee--cCeEeee---cCCccceecCCC
Q psy11539 309 VVEDCDHV-FAYVN-DV--FRYGLIVYDFFKNTSYRLTH---PYMYPEPTQSTYIL--DNLKFRW---VDGIFGMAISPE 376 (530)
Q Consensus 309 v~~~c~~~-~AYIt-Ds--g~~gLIVyDl~~g~swRv~h---~sf~pdP~~~~f~I--~G~~f~~---~dGi~GIALsp~ 376 (530)
. ++. +++.. +- ..--|+.+|..+++...+.. .... +.......+ +|..|.| .+|-..|++-..
T Consensus 193 --~--d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 193 --P--DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp --E--TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred --C--CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-eeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 1 223 22222 11 12356667776665543321 1111 111111112 4444443 455545554443
Q ss_pred cccccccCCCcccccccccccCCccc--cccccCCCceEEEEeCC----CCeeEEEecc
Q psy11539 377 LSGYKYKRHPYEYYHYNVHHYNGTNV--DKTIRDDQRYMYFHSMS----SNRHYYVSTT 429 (530)
Q Consensus 377 ~~~~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~r~LYf~pls----S~~lY~V~T~ 429 (530)
. |.+.+ ..+.+.-+| -+.++..++.|||.+-. -++||+|+..
T Consensus 268 ~-~~~~~----------~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 268 D-GGKPR----------QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp T-SSEEE----------ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred c-cccee----------ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 2 11111 122222233 12246778899999886 4589999865
No 151
>KOG2055|consensus
Probab=35.79 E-value=5.9e+02 Score=28.89 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=31.0
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCC-CeEEEEEccCC
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFR-YGLIVYDFFKN 336 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~-~gLIVyDl~~g 336 (530)
+-++.|||.+.++.+. ..|-. .+...+..+.|- .|.. ||+=.|. +.|.++...++
T Consensus 280 ky~ysyDle~ak~~k~-~~~~g--~e~~~~e~FeVS---hd~~---fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKL-KPPYG--VEEKSMERFEVS---HDSN---FIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred eEEEEeeccccccccc-cCCCC--cccchhheeEec---CCCC---eEEEcccCceEEeehhhhh
Confidence 4599999999888752 22222 123456666664 1233 4554453 34666666665
No 152
>PLN00181 protein SPA1-RELATED; Provisional
Probab=35.29 E-value=7.9e+02 Score=28.78 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=38.5
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEE
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYR 340 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swR 340 (530)
-.|.+||+.+++.+..+.-. ...+..+.+. ..++...++=+.+..|.+||+.+++...
T Consensus 555 g~v~lWd~~~~~~~~~~~~H------~~~V~~l~~~----p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEH------EKRVWSIDYS----SADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CeEEEEECCCCeEEEEecCC------CCCEEEEEEc----CCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 45899999999888766432 2234556664 2244455565667789999999876543
No 153
>PTZ00420 coronin; Provisional
Probab=35.18 E-value=7.5e+02 Score=28.49 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=37.5
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEE
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYR 340 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swR 340 (530)
-.|.+||+.+++.+..+..+. .+..+.++ .++...++-..+..|.+||+++++.-+
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~-------~V~Slsws-----pdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPK-------KLSSLKWN-----IKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred CeEEEEECCCCcEEEEEecCC-------cEEEEEEC-----CCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 359999999998877665432 24556665 234444555556789999999886543
No 154
>KOG0289|consensus
Probab=34.96 E-value=5.7e+02 Score=28.84 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=37.8
Q ss_pred EEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEcc-CCeEEEEc
Q psy11539 275 IMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFF-KNTSYRLT 342 (530)
Q Consensus 275 LvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~-~g~swRv~ 342 (530)
+..|||+..+.+++|.+++. --.+++-+|. .+.|.-|+ +..|.||=.+ ..++|+-.
T Consensus 413 V~lwDLRKl~n~kt~~l~~~-----~~v~s~~fD~----SGt~L~~~---g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQLDEK-----KEVNSLSFDQ----SGTYLGIA---GSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EEEEEehhhcccceeecccc-----ccceeEEEcC----CCCeEEee---cceeEEEEEecccccceee
Confidence 89999999999999999764 1357778883 45676666 3344444433 34578743
No 155
>KOG0646|consensus
Probab=34.73 E-value=4.7e+02 Score=29.48 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=71.0
Q ss_pred CCCcccCCCceeeeEEe-CCeEEEEccCCCCCCC--cEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeC
Q psy11539 173 SNKFIPENNLPLGIGIW-RSTIFLSFPKWKAGIP--FTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDK 249 (530)
Q Consensus 173 sg~Yip~n~iP~GV~v~-~gRlFVTiPR~~~GvP--~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~ 249 (530)
++.|.+- +=+.+. +|.+|+|--. +|.- ..|..+....... ..+|+=.|.-| =-+|..++|+.
T Consensus 120 ~aHYQ~I----TcL~fs~dgs~iiTgsk--Dg~V~vW~l~~lv~a~~~~--~~~p~~~f~~H-------tlsITDl~ig~ 184 (476)
T KOG0646|consen 120 SAHYQSI----TCLKFSDDGSHIITGSK--DGAVLVWLLTDLVSADNDH--SVKPLHIFSDH-------TLSITDLQIGS 184 (476)
T ss_pred Hhhccce----eEEEEeCCCcEEEecCC--CccEEEEEEEeecccccCC--CccceeeeccC-------cceeEEEEecC
Confidence 4455443 445565 7889988533 4421 1222222111111 34566566544 46788888876
Q ss_pred CCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEE
Q psy11539 250 CDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLI 329 (530)
Q Consensus 250 cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLI 329 (530)
.|..=.|=|.. ...-+-+|||..|.|+.++.||.. +..+++|. .+..+||--.. +.|.
T Consensus 185 Gg~~~rl~TaS----------~D~t~k~wdlS~g~LLlti~fp~s-------i~av~lDp----ae~~~yiGt~~-G~I~ 242 (476)
T KOG0646|consen 185 GGTNARLYTAS----------EDRTIKLWDLSLGVLLLTITFPSS-------IKAVALDP----AERVVYIGTEE-GKIF 242 (476)
T ss_pred CCccceEEEec----------CCceEEEEEeccceeeEEEecCCc-------ceeEEEcc----cccEEEecCCc-ceEE
Confidence 54111111111 123477899999999999999754 68899994 56778886543 2444
Q ss_pred EEEcc
Q psy11539 330 VYDFF 334 (530)
Q Consensus 330 VyDl~ 334 (530)
+.++.
T Consensus 243 ~~~~~ 247 (476)
T KOG0646|consen 243 QNLLF 247 (476)
T ss_pred eeehh
Confidence 44444
No 156
>KOG0278|consensus
Probab=34.36 E-value=5.9e+02 Score=26.99 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCC
Q psy11539 236 CNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDH 315 (530)
Q Consensus 236 c~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~ 315 (530)
..++..|.-..-|.| .|=-.|.|. +-.||-+|++.++++.|+..+ +.+.|- .++
T Consensus 143 tg~Ir~v~wc~eD~~-iLSSadd~t--------------VRLWD~rTgt~v~sL~~~s~V-------tSlEvs----~dG 196 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKC-ILSSADDKT--------------VRLWDHRTGTEVQSLEFNSPV-------TSLEVS----QDG 196 (334)
T ss_pred CCcceeEEEeccCce-EEeeccCCc--------------eEEEEeccCcEEEEEecCCCC-------cceeec----cCC
Confidence 356777766666666 111123332 778999999999999997653 445554 245
Q ss_pred eEEEEecCCCCeEEEEEcc
Q psy11539 316 VFAYVNDVFRYGLIVYDFF 334 (530)
Q Consensus 316 ~~AYItDsg~~gLIVyDl~ 334 (530)
.++=|+|.+ +|+-+|.+
T Consensus 197 ~ilTia~gs--sV~Fwdak 213 (334)
T KOG0278|consen 197 RILTIAYGS--SVKFWDAK 213 (334)
T ss_pred CEEEEecCc--eeEEeccc
Confidence 666677653 56666655
No 157
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=34.06 E-value=2e+02 Score=30.12 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred EeCCCcEEEE-eCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCC
Q psy11539 247 VDKCDRLWIM-DTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFR 325 (530)
Q Consensus 247 ID~cgRLWVL-DtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~ 325 (530)
++..|++++. ..|. |.++|+.+++++-++.+.. ....++.-++. .++.+|+++...
T Consensus 65 ~~~dg~v~~~~~~G~--------------i~A~d~~~g~~~W~~~~~~----~~~~~~~~~~~-----~~G~i~~g~~~g 121 (370)
T COG1520 65 ADGDGTVYVGTRDGN--------------IFALNPDTGLVKWSYPLLG----AVAQLSGPILG-----SDGKIYVGSWDG 121 (370)
T ss_pred EeeCCeEEEecCCCc--------------EEEEeCCCCcEEecccCcC----cceeccCceEE-----eCCeEEEecccc
Q ss_pred CeEEEEEc-cCCeEEEEc
Q psy11539 326 YGLIVYDF-FKNTSYRLT 342 (530)
Q Consensus 326 ~gLIVyDl-~~g~swRv~ 342 (530)
-++++|. .....|+..
T Consensus 122 -~~y~ld~~~G~~~W~~~ 138 (370)
T COG1520 122 -KLYALDASTGTLVWSRN 138 (370)
T ss_pred -eEEEEECCCCcEEEEEe
No 158
>PRK01029 tolB translocation protein TolB; Provisional
Probab=33.95 E-value=5.9e+02 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCeEEEEecCC-CCeEEEEEccCCeEEEEc
Q psy11539 314 DHVFAYVNDVF-RYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 314 ~~~~AYItDsg-~~gLIVyDl~~g~swRv~ 342 (530)
++..||+++.. ...|.+||+.+++..++.
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQLT 367 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEEcc
Confidence 45577887653 457999999999776654
No 159
>KOG1272|consensus
Probab=33.86 E-value=3.1e+02 Score=31.03 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCcceEEcCCCcEEEEccCCCeEEEEeCC
Q psy11539 458 QASASAINSNGVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 458 qs~G~aiD~~G~LYft~~~~~aI~cWnt~ 486 (530)
.-.++++|++|..-.+.-....|-+||..
T Consensus 295 ~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 295 PVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred CcceEEECCCCcEEeecccccceeEeeec
Confidence 46789999999999998889999999998
No 160
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=33.80 E-value=1.2e+02 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=17.2
Q ss_pred cceEEEeecCCCCeEEEEecCCCCeEEEEEccC
Q psy11539 303 SNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFK 335 (530)
Q Consensus 303 ndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~ 335 (530)
..++++ ++.+|+.+. ...|+.+|.++
T Consensus 15 ~~~~v~------~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVA------GGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp S--EEC------TSEEEEE-T-TSEEEEEETT-
T ss_pred cCCEEE------CCEEEEEcC-CCEEEEEeCCC
Confidence 445775 689999997 46888888764
No 161
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=32.45 E-value=6e+02 Score=26.54 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=95.4
Q ss_pred ceEEEEEeeeeeecCChHHHH-hhh-cC--CCcccCCCc-eeeeEEe-CCeEEEEccCCCCCCCcEEEEEECCCCC----
Q psy11539 148 FQVVFRWKIMDFVFRDNKQKV-NLI-RS--NKFIPENNL-PLGIGIW-RSTIFLSFPKWKAGIPFTLASFNMNDPS---- 217 (530)
Q Consensus 148 l~~vy~Wk~ldf~~p~~~~r~-~ai-~s--g~Yip~n~i-P~GV~v~-~gRlFVTiPR~~~GvP~TLa~V~~~~~~---- 217 (530)
=+++|+|+-+|..-+.+.... ..+ .. ....|...+ ...|+.. +|.++||+ | .-.+|..|+..++.
T Consensus 106 gevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~-R----~~~~i~~I~~~tG~I~W~ 180 (299)
T PF14269_consen 106 GEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISS-R----NTSTIYKIDPSTGKIIWR 180 (299)
T ss_pred CCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEe-c----ccCEEEEEECCCCcEEEE
Confidence 369999999997765554411 111 11 111222222 4667776 67888885 3 33588888865431
Q ss_pred -CCC-----ccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCc--EEEEE
Q psy11539 218 -ESP-----ILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNT--LIRKY 289 (530)
Q Consensus 218 -~sP-----~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~--li~~y 289 (530)
+.+ .+ +--.|.|+- + ..+.+.. +..++|=|.|.+.... ........+++.+|.++.+ +++++
T Consensus 181 lgG~~~~df~~-~~~~f~~QH--d-ar~~~~~----~~~~~IslFDN~~~~~--~~~~~s~~~v~~ld~~~~~~~~~~~~ 250 (299)
T PF14269_consen 181 LGGKRNSDFTL-PATNFSWQH--D-ARFLNES----NDDGTISLFDNANSDF--NGTEPSRGLVLELDPETMTVTLVREY 250 (299)
T ss_pred eCCCCCCcccc-cCCcEeecc--C-CEEeccC----CCCCEEEEEcCCCCCC--CCCcCCCceEEEEECCCCEEEEEEEe
Confidence 111 11 112244431 1 1122111 4677888889865433 3445677899999999764 45555
Q ss_pred E-CCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEE
Q psy11539 290 I-LPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRL 341 (530)
Q Consensus 290 ~-~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv 341 (530)
. -|..+... ..-+..+ + .++.+.|+....+.+.=|+....-.|.+
T Consensus 251 ~~~~~~~~s~--~~G~~Q~-L----~nGn~li~~g~~g~~~E~~~~G~vv~~~ 296 (299)
T PF14269_consen 251 SDHPDGFYSP--SQGSAQR-L----PNGNVLIGWGNNGRISEFTPDGEVVWEA 296 (299)
T ss_pred ecCCCccccc--CCCcceE-C----CCCCEEEecCCCceEEEECCCCCEEEEE
Confidence 5 23333211 1122222 1 3578888888887788787776666653
No 162
>KOG0306|consensus
Probab=32.42 E-value=8.6e+02 Score=29.31 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=89.7
Q ss_pred CCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEcCCCCCcCCC
Q psy11539 272 PPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPT 351 (530)
Q Consensus 272 ~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~h~sf~pdP~ 351 (530)
.-+|-+||+....++-++.-.+. -+=+|.+= .++--++|=+++..+-.||+.--.+ .|.
T Consensus 433 ~Gel~vfdlaS~~l~Eti~AHdg------aIWsi~~~-----pD~~g~vT~saDktVkfWdf~l~~~----------~~g 491 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETIRAHDG------AIWSISLS-----PDNKGFVTGSADKTVKFWDFKLVVS----------VPG 491 (888)
T ss_pred CCceEEEEeehhhhhhhhhcccc------ceeeeeec-----CCCCceEEecCCcEEEEEeEEEEec----------cCc
Confidence 34577777777666655542221 12233332 2333456666666666666542211 111
Q ss_pred cc--eeee-cCeEeeecCCccceecCCCcccccccCCCcccccccccccCCccccccccCCCceEEEEeCCCCeeEEEec
Q psy11539 352 QS--TYIL-DNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVST 428 (530)
Q Consensus 352 ~~--~f~I-~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~r~LYf~plsS~~lY~V~T 428 (530)
.. .+.+ ....+.+.+.+.-+++||++ ||+ .|-..|.+ .-+---+..=+|-.|=|++|=.+..
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdg---k~L---------aVsLLdnT---VkVyflDtlKFflsLYGHkLPV~sm 556 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDG---KLL---------AVSLLDNT---VKVYFLDTLKFFLSLYGHKLPVLSM 556 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCC---cEE---------EEEeccCe---EEEEEecceeeeeeecccccceeEE
Confidence 10 1222 22346777888899999987 221 11111111 0000001223455666777766655
Q ss_pred chhcCccccCCccccccceEEecc-ccC-----CCCCcc-eEEc--CCCcEEEEccCCCeEEEEeCC
Q psy11539 429 TDLRNSSRYVNSSDIDEYFHYLGS-RFK-----NTQASA-SAIN--SNGVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 429 ~~Lrn~s~~~~~~~~~~~v~~lG~-rG~-----~sqs~G-~aiD--~~G~LYft~~~~~aI~cWnt~ 486 (530)
.+--+..+-. ...+.+.|+.||- -|. .+.-+. |.+- ..-.+||+.--...|-.||..
T Consensus 557 DIS~DSkliv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 557 DISPDSKLIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred eccCCcCeEE-eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 4443333221 1334678999983 221 021122 2222 556799999999999999987
No 163
>KOG0288|consensus
Probab=32.14 E-value=4.4e+02 Score=29.45 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=53.2
Q ss_pred EEEEEEeCCCcEEEEeCCCCC--cccCccccCCCEEE-----EEECCCCcEEEEEECCCcc----cccCccccceEEEee
Q psy11539 242 VFRMSVDKCDRLWIMDTGVTN--ILSSIQQLCPPKIM-----VFDLKTNTLIRKYILPTAQ----VFEGSLFSNIVTEVV 310 (530)
Q Consensus 242 V~rv~ID~cgRLWVLDtG~~~--~~~~~~~~c~PKLv-----vfDL~Td~li~~y~~P~~v----~~~~S~lndIvVDv~ 310 (530)
++.-.-|..-|+|=+|.++.- ..|...++|..|.. +++...|+.++-.+|-... +.+.|.-+||++-
T Consensus 234 ~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS-- 311 (459)
T ss_pred EEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--
Confidence 334445666689999988632 22333344544443 5566666666666664322 1234455666652
Q ss_pred cCCCCeEEEEecCCCCeEEEEEccCCeEEE
Q psy11539 311 EDCDHVFAYVNDVFRYGLIVYDFFKNTSYR 340 (530)
Q Consensus 311 ~~c~~~~AYItDsg~~gLIVyDl~~g~swR 340 (530)
...+|++-....|--||.++.+..+
T Consensus 312 -----~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 312 -----ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred -----ceeeeecccccceEEEeccCCceee
Confidence 4557787777777777877664443
No 164
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=30.91 E-value=90 Score=30.64 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=28.0
Q ss_pred eCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEE
Q psy11539 248 DKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYI 290 (530)
Q Consensus 248 D~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~ 290 (530)
...++|-|+|-..+- ..+++++|||++++++...-
T Consensus 32 ~~~~~l~iIDfs~pS--------~~~R~~v~Dl~~~~~l~~~~ 66 (176)
T PF13645_consen 32 YNKDILTIIDFSKPS--------GEKRFFVIDLKKGKLLYNTL 66 (176)
T ss_pred CCCCeEEEEECCCCC--------CCCeEEEEECCCCEEEEeee
Confidence 356788899999864 56899999999999986433
No 165
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=30.13 E-value=1.4e+02 Score=31.04 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=38.5
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCeEEEEc
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNTSYRLT 342 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~swRv~ 342 (530)
.+|.+|||++.++++++.|..+--..-..+..+... -+.-++|++ ....+|.++|......-++.
T Consensus 67 ~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~----~Dsi~l~~~-~~~~~l~~~n~~G~~~~~~~ 131 (333)
T PF13970_consen 67 HSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQN----LDSIFLFNS-YAFPKLFLFNSQGEVLKKID 131 (333)
T ss_dssp -EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEES----SSTTSEEEE-GGGTEEEEE-TT--EEEEEE
T ss_pred ceEEEEECCCCceeeeeeeeeECCCCccccccceEc----CCceEEEec-CCcceEEEEcCCCeEEEEEe
Confidence 579999999999999999965521111122233311 145577877 66788999998877666654
No 166
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=29.55 E-value=1.2e+02 Score=35.10 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=44.6
Q ss_pred CCCcceEEc-CCCcEEEEccCCC----------------eEEEEeCCCCccccC--ceeE--EeecCCceee--------
Q psy11539 457 TQASASAIN-SNGVMFYNLVTKH----------------SVGCWNTKTKVYLPQ--TQDI--VQTSRDILNF-------- 507 (530)
Q Consensus 457 sqs~G~aiD-~~G~LYft~~~~~----------------aI~cWnt~~~~~~~~--n~~l--V~~d~~~L~~-------- 507 (530)
..+-++++. .+|.+||++.+.. .|++|-+.++.++.. ..++ .+.+...+.-
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence 356777777 6788999988765 589998874322221 1222 2334444555
Q ss_pred -----cceeEEecCCcEEEE
Q psy11539 508 -----REEGEEEEEKENTCT 522 (530)
Q Consensus 508 -----Pd~l~Id~dG~lYv~ 522 (530)
||+|++|..|.|||.
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~ 516 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQ 516 (616)
T ss_pred ccccCCCceEECCCCCEEEE
Confidence 999999999999984
No 167
>KOG0307|consensus
Probab=29.50 E-value=2.4e+02 Score=34.70 Aligned_cols=183 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred EEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEE
Q psy11539 241 SVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYV 320 (530)
Q Consensus 241 SV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYI 320 (530)
+|.++.+-.-.+-|+..-|.-+- |++|||++ .-.-+..+ ...+.+=+.-+.=+-.-.++.-
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~ge-----------I~iWDlnn--~~tP~~~~------~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGE-----------ILIWDLNK--PETPFTPG------SQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCc-----------EEEeccCC--cCCCCCCC------CCCCcccceEeccchhhhHHhh
Q ss_pred ecCCCCeEEEEEccCCeEEEEcCCCCCcCCCcceeeecCeEeeecCCccceecCCCcccccccCCCcccccccccccCCc
Q psy11539 321 NDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGT 400 (530)
Q Consensus 321 tDsg~~gLIVyDl~~g~swRv~h~sf~pdP~~~~f~I~G~~f~~~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~ 400 (530)
+=+..+-.+|||++.++-- ..+.-.+....|. +|+-+|+.
T Consensus 179 S~s~sg~~~iWDlr~~~pi-------------i~ls~~~~~~~~S----~l~WhP~~----------------------- 218 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPI-------------IKLSDTPGRMHCS----VLAWHPDH----------------------- 218 (1049)
T ss_pred ccCCCCCceeccccCCCcc-------------cccccCCCcccee----eeeeCCCC-----------------------
Q ss_pred cccccccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEe-ccccCCCCCcceEEc---CCCcEEEEccC
Q psy11539 401 NVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYL-GSRFKNTQASASAIN---SNGVMFYNLVT 476 (530)
Q Consensus 401 ~~~~~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~l-G~rG~~sqs~G~aiD---~~G~LYft~~~ 476 (530)
-+--..+--+.+.=.|..-.||..+. -++.+ |. +.+-+.+| .+-.|-++.-.
T Consensus 219 ----------aTql~~As~dd~~PviqlWDlR~ass---------P~k~~~~H-----~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 219 ----------ATQLLVASGDDSAPVIQLWDLRFASS---------PLKILEGH-----QRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred ----------ceeeeeecCCCCCceeEeecccccCC---------chhhhccc-----ccceeeeccCCCCchhhhcccC
Q ss_pred CCeEEEEeCCCCccccCceeEEeecCCceeecceeEE
Q psy11539 477 KHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGEE 513 (530)
Q Consensus 477 ~~aI~cWnt~~~~~~~~n~~lV~~d~~~L~~Pd~l~I 513 (530)
.+.|.|||++ +-++|+.=..+=.|--++++
T Consensus 275 D~~ii~wN~~-------tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 275 DNRIICWNPN-------TGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred CCCeeEecCC-------CceEeeecCCCCcceeeeee
No 168
>KOG1274|consensus
Probab=28.74 E-value=1.2e+03 Score=28.70 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=33.0
Q ss_pred ceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEEEeCCCCcc
Q psy11539 446 YFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGCWNTKTKVY 490 (530)
Q Consensus 446 ~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~cWnt~~~~~ 490 (530)
..+.-|.++ +-.++.+|.+|++...-.-.+.|.||+.+++..
T Consensus 131 ~~~lrgh~a---pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 131 EKVLRGHDA---PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred heeecccCC---ceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence 445556554 678899999999998888999999999984443
No 169
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=28.32 E-value=1.2e+02 Score=33.74 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=42.2
Q ss_pred CCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecC---C-CCeEEEEEccCCeEE
Q psy11539 271 CPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDV---F-RYGLIVYDFFKNTSY 339 (530)
Q Consensus 271 c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDs---g-~~gLIVyDl~~g~sw 339 (530)
...+|.+||+.+.++...-.||.+.. .++-+...+ +++.|||+=. + ...|..+|..++++-
T Consensus 365 ~~~~laI~d~~~kt~t~V~glP~~~i--s~~~~~~~v------e~G~aYi~Vtt~~g~~~~IY~iDp~TatAt 429 (435)
T PF14298_consen 365 DAKKLAIFDVSNKTFTWVTGLPADLI--SGFGNAPYV------ENGKAYIPVTTEDGSDPYIYKIDPATATAT 429 (435)
T ss_pred ccceEEEEEccCceeEEeccCChhhc--cccccceEe------eCCEEEEEEeecCCCceeEEEEcCcccccc
Confidence 45789999999999988888986511 122233344 4688998643 3 367888998888654
No 170
>KOG0263|consensus
Probab=27.69 E-value=1.7e+02 Score=34.47 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=37.6
Q ss_pred EEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccC
Q psy11539 274 KIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFK 335 (530)
Q Consensus 274 KLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~ 335 (530)
-|.+||+.+++++..+.=- .+....|.+ |.++.+.+++.++..|-+||+.+
T Consensus 600 ~I~iWDl~~~~~v~~l~~H------t~ti~SlsF-----S~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGH------TGTIYSLSF-----SRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcchhhhhcc------cCceeEEEE-----ecCCCEEEecCCCCeEEEEEchh
Confidence 3889999888887643321 334455666 46789999999999999999874
No 171
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=27.15 E-value=7.6e+02 Score=26.03 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred cCCCceeeeEEeCCeEEEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCCCCCCCceEEEEEEEeCCCcEEEE-
Q psy11539 178 PENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIM- 256 (530)
Q Consensus 178 p~n~iP~GV~v~~gRlFVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~~nc~~LvSV~rv~ID~cgRLWVL- 256 (530)
+....-..+..+++++|+..-+ .+.-..|..++.........-..++--.+. +.+.++.+.+...++..
T Consensus 275 ~~~~~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~--------~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 275 REDGVEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDED--------VSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp SSSS-EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSS--------EEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCc--------eeEEEEEEECCEEEEEEE
Q ss_pred eCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCe-EEEEEccC
Q psy11539 257 DTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYG-LIVYDFFK 335 (530)
Q Consensus 257 DtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~g-LIVyDl~~ 335 (530)
+-|. ++|.++|+..+.....+.+|.. +.+..+.-+-.. +.-++.++....++ |+.||+.+
T Consensus 345 ~~~~------------~~l~v~~~~~~~~~~~~~~p~~-----g~v~~~~~~~~~--~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 345 ENGS------------SRLRVYDLDDGKESREIPLPEA-----GSVSGVSGDFDS--DELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp ETTE------------EEEEEEETT-TEEEEEEESSSS-----SEEEEEES-TT---SEEEEEEEETTEEEEEEEEETTT
T ss_pred ECCc------------cEEEEEECCCCcEEeeecCCcc-----eEEeccCCCCCC--CEEEEEEeCCCCCCEEEEEECCC
Q ss_pred CeEEEEc
Q psy11539 336 NTSYRLT 342 (530)
Q Consensus 336 g~swRv~ 342 (530)
|+.-++.
T Consensus 406 ~~~~~~k 412 (414)
T PF02897_consen 406 GELTLLK 412 (414)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
No 172
>KOG0263|consensus
Probab=26.65 E-value=7.6e+02 Score=29.38 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=27.0
Q ss_pred CCcceEEcCCCcEEEEccCCCeEEEEeCCCCcc
Q psy11539 458 QASASAINSNGVMFYNLVTKHSVGCWNTKTKVY 490 (530)
Q Consensus 458 qs~G~aiD~~G~LYft~~~~~aI~cWnt~~~~~ 490 (530)
.-..+.+..+|++.++.-..++|..||-. +..
T Consensus 621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~-~~~ 652 (707)
T KOG0263|consen 621 TIYSLSFSRDGNVLASGGADNSVRLWDLT-KVI 652 (707)
T ss_pred ceeEEEEecCCCEEEecCCCCeEEEEEch-hhc
Confidence 34567788999999999999999999988 554
No 173
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=25.64 E-value=2.4e+02 Score=33.62 Aligned_cols=64 Identities=14% Similarity=0.034 Sum_probs=38.5
Q ss_pred EEEEEECCCCcEEEEEECCCcccccCc--cccceEEEee------------c-CCCCeEEEEecCCCCeEEEEEccCCeE
Q psy11539 274 KIMVFDLKTNTLIRKYILPTAQVFEGS--LFSNIVTEVV------------E-DCDHVFAYVNDVFRYGLIVYDFFKNTS 338 (530)
Q Consensus 274 KLvvfDL~Td~li~~y~~P~~v~~~~S--~lndIvVDv~------------~-~c~~~~AYItDsg~~gLIVyDl~~g~s 338 (530)
+|+++|.+||+++-+|+.......... .-..+++--. . .| ++.+|+... +..||.+|.++|+.
T Consensus 205 ~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~-~~rV~~~T~-Dg~LiALDA~TGk~ 282 (764)
T TIGR03074 205 KVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC-ARRIILPTS-DARLIALDADTGKL 282 (764)
T ss_pred eEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc-CCEEEEecC-CCeEEEEECCCCCE
Confidence 699999999999999987543211000 0011111100 0 13 347777765 45799999998876
Q ss_pred E
Q psy11539 339 Y 339 (530)
Q Consensus 339 w 339 (530)
.
T Consensus 283 ~ 283 (764)
T TIGR03074 283 C 283 (764)
T ss_pred E
Confidence 4
No 174
>KOG1445|consensus
Probab=25.44 E-value=1.2e+03 Score=27.80 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=22.2
Q ss_pred CcceEEc-CCCcEEEEccCCCeEEEEeCC
Q psy11539 459 ASASAIN-SNGVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 459 s~G~aiD-~~G~LYft~~~~~aI~cWnt~ 486 (530)
.---.+| ..++||++.-+...|.||-.-
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEec
Confidence 3334678 778999999999999999753
No 175
>PTZ00421 coronin; Provisional
Probab=25.24 E-value=1e+03 Score=26.78 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=20.2
Q ss_pred CcceEEcCC-CcEEEEccCCCeEEEEeCC
Q psy11539 459 ASASAINSN-GVMFYNLVTKHSVGCWNTK 486 (530)
Q Consensus 459 s~G~aiD~~-G~LYft~~~~~aI~cWnt~ 486 (530)
-..+++... ++++++-...+.|.+||..
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 445667654 3577776778889999987
No 176
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=24.81 E-value=9.1e+02 Score=26.16 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCceEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEEECC-------CCcEEEEEECCCcccccCccccceEEE
Q psy11539 237 NSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLK-------TNTLIRKYILPTAQVFEGSLFSNIVTE 308 (530)
Q Consensus 237 ~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvfDL~-------Td~li~~y~~P~~v~~~~S~lndIvVD 308 (530)
..|++.-+|.+-..+-+||.|.|.-- .-.||.. -..|+-++..|.... ..+....+++.
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~------------~TlYdg~~~~~~g~~~~L~vtiP~~~~~~-~~~~PTGiVfN 85 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGT------------ATLYVGNPDTQPLVQDPLVVVIPAPPPLA-AEGTPTGQVFN 85 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcce------------EEeecCCcccccCCccceEEEecCCCCCC-CCCCccEEEEe
Confidence 56999999999999999999999732 4455554 124554444434321 22345667765
No 177
>KOG0315|consensus
Probab=24.59 E-value=8.6e+02 Score=25.78 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=37.8
Q ss_pred EEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCC
Q psy11539 275 IMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKN 336 (530)
Q Consensus 275 LvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g 336 (530)
+-+|||+.=..-|-|.++ |-.+.+++. ...+.+...|-. +.|-|||+.++
T Consensus 107 ~kIWdlR~~~~qR~~~~~-------spVn~vvlh----pnQteLis~dqs-g~irvWDl~~~ 156 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQHN-------SPVNTVVLH----PNQTELISGDQS-GNIRVWDLGEN 156 (311)
T ss_pred EEEEeccCcccchhccCC-------CCcceEEec----CCcceEEeecCC-CcEEEEEccCC
Confidence 778999885555556654 446888888 367888888854 58999999987
No 178
>KOG1898|consensus
Probab=23.69 E-value=1.5e+03 Score=28.40 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=18.6
Q ss_pred EEEEECCCCcEEEEEECCCc
Q psy11539 275 IMVFDLKTNTLIRKYILPTA 294 (530)
Q Consensus 275 LvvfDL~Td~li~~y~~P~~ 294 (530)
|-+||.++++.+..+.++.+
T Consensus 855 I~~~d~~s~~~~~~~~l~~n 874 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQN 874 (1205)
T ss_pred EEEEcCCCCceEEEEeecCC
Confidence 99999999999999999876
No 179
>KOG4378|consensus
Probab=23.63 E-value=1.2e+03 Score=27.03 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred EEEEeCCCCCcccCccccCCCEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeE-EEEecCCCCeEEEE
Q psy11539 253 LWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVF-AYVNDVFRYGLIVY 331 (530)
Q Consensus 253 LWVLDtG~~~~~~~~~~~c~PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~-AYItDsg~~gLIVy 331 (530)
|+.+-.|..+. +-+|||+ .++++|..-... +....+.-. |.+.| |=++|.|. |||.
T Consensus 92 ~y~~sgG~~~~-----------Vkiwdl~-~kl~hr~lkdh~-----stvt~v~YN----~~DeyiAsvs~gGd--iiih 148 (673)
T KOG4378|consen 92 LYEISGGQSGC-----------VKIWDLR-AKLIHRFLKDHQ-----STVTYVDYN----NTDEYIASVSDGGD--IIIH 148 (673)
T ss_pred eeeeccCcCce-----------eeehhhH-HHHHhhhccCCc-----ceeEEEEec----CCcceeEEeccCCc--EEEE
Q ss_pred EccCCeEEEEcCCCCCcCCCcceeeec-CeEeee------cCCccceecCCCcccccccCCCcccccccccccCCccccc
Q psy11539 332 DFFKNTSYRLTHPYMYPEPTQSTYILD-NLKFRW------VDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDK 404 (530)
Q Consensus 332 Dl~~g~swRv~h~sf~pdP~~~~f~I~-G~~f~~------~dGi~GIALsp~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 404 (530)
..+++ -...+|.++ |+.+++ .--+.++|=+.-....-=.+.-++++|..-.|.+..- ||
T Consensus 149 ~~~t~-------------~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~-gi 214 (673)
T KOG4378|consen 149 GTKTK-------------QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR-GI 214 (673)
T ss_pred ecccC-------------ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC-cc
Q ss_pred cccCCCceEEEEeCCCCeeEEEecchhcCccccCCccccccceEEeccccCCCCCcceEEcCCCcEEEEccCCCeEEEEe
Q psy11539 405 TIRDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVTKHSVGCWN 484 (530)
Q Consensus 405 ~~~~~~r~LYf~plsS~~lY~V~T~~Lrn~s~~~~~~~~~~~v~~lG~rG~~sqs~G~aiD~~G~LYft~~~~~aI~cWn 484 (530)
-.+..++-|+.+----.++|--+++.-+.... ..-+.. -..+++..+|.+.++.-.++.|+.||
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~------------l~y~~P----lstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRSQASTDR------------LTYSHP----LSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred eecCCccceEEEecccceEEEeecccccccce------------eeecCC----cceeeecCCceEEEeecCCceEEEEe
Q ss_pred CC
Q psy11539 485 TK 486 (530)
Q Consensus 485 t~ 486 (530)
..
T Consensus 279 ~R 280 (673)
T KOG4378|consen 279 MR 280 (673)
T ss_pred cc
No 180
>KOG0313|consensus
Probab=23.44 E-value=3.5e+02 Score=29.86 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=35.0
Q ss_pred CEEEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCCe
Q psy11539 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT 337 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g~ 337 (530)
-.|.+|||.+++.+.++.-+.. |+.|..- ..-.+-++=+.+.-|.+||.+++.
T Consensus 281 HTIk~WDletg~~~~~~~~~ks-------l~~i~~~-----~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLTTNKS-------LNCISYS-----PLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ceEEEEEeecccceeeeecCcc-------eeEeecc-----cccceeeecCCCCceeecCCCCCC
Confidence 4599999999999877766543 2333222 123344555566788999999883
No 181
>KOG0293|consensus
Probab=22.96 E-value=7.5e+02 Score=27.87 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=34.2
Q ss_pred EEEEECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEEEEecCCCCeEEEEEccCC
Q psy11539 275 IMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKN 336 (530)
Q Consensus 275 LvvfDL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~AYItDsg~~gLIVyDl~~g 336 (530)
|..||-.||.+.+.|.=. . ..| ....+ =|.+++-+|+=+-+.+|+.+|+..+
T Consensus 293 ~~lwDv~tgd~~~~y~~~--~--~~S-~~sc~-----W~pDg~~~V~Gs~dr~i~~wdlDgn 344 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSG--L--GFS-VSSCA-----WCPDGFRFVTGSPDRTIIMWDLDGN 344 (519)
T ss_pred eeeccCCcchhhhhcccC--c--CCC-cceeE-----EccCCceeEecCCCCcEEEecCCcc
Confidence 677787777777655432 0 001 11111 1567888999998999999999876
No 182
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.53 E-value=1.7e+02 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=13.1
Q ss_pred CEEEEEECCCCcEEEEE
Q psy11539 273 PKIMVFDLKTNTLIRKY 289 (530)
Q Consensus 273 PKLvvfDL~Td~li~~y 289 (530)
-+|+++|.++|+++-++
T Consensus 16 g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEEcccCcEEEEc
Confidence 35999999999887543
No 183
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.21 E-value=1.8e+02 Score=32.85 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=70.1
Q ss_pred EEEccCCCCCCCcEEEEEECCCCCCCCccCCCCCCCcCCC---CCCCCceEEEEEEEeCCCcEEEEeCCCCCcccCcccc
Q psy11539 194 FLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDD---SNCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQL 270 (530)
Q Consensus 194 FVTiPR~~~GvP~TLa~V~~~~~~~sP~L~PYPsw~wn~~---~nc~~LvSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~ 270 (530)
+....||++..|..+..|.....+.--....=|..-||-. .+|++-+-+--+..|.- -=.+|.+.-.-.+.....
T Consensus 262 ~~~~~~~~pe~ptri~V~pR~g~~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~--~~~~~~~~~~~~g~~~~~ 339 (490)
T COG3670 262 DGHAMRWRPELPTRILVLPREGDSEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDF--SQTLDTLGEGPGGDFRTL 339 (490)
T ss_pred cccceeecCCCCcEEEEEccCCCCceeEEecCCeEEEEecceeecCCCcEEEEEEeeccc--cccccccccccccccccc
Confidence 6667788888898888888652110001122244555532 23444433333222211 123444443222333333
Q ss_pred CCCEEEE--EECCCCcEEE------EEECCCcccccCccccceEEEeec-CCCCeEEEEecCC-----CCe---EEEEEc
Q psy11539 271 CPPKIMV--FDLKTNTLIR------KYILPTAQVFEGSLFSNIVTEVVE-DCDHVFAYVNDVF-----RYG---LIVYDF 333 (530)
Q Consensus 271 c~PKLvv--fDL~Td~li~------~y~~P~~v~~~~S~lndIvVDv~~-~c~~~~AYItDsg-----~~g---LIVyDl 333 (530)
.+|+|.. +||+|+++.. .-+|| +|+.+. +-...|+|++=.. ..| |+.+|+
T Consensus 340 a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP-------------~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~ 406 (490)
T COG3670 340 APPRLHRWTLNLKTGKVAEEQLDDRACEFP-------------RINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDL 406 (490)
T ss_pred CCCcceEEEEccccchhHHHhhhhhhcccC-------------ccChhhcCCceEEEEEecccCCccchhhcceeEEEec
Confidence 4777765 5788886432 12232 333222 2345788888321 124 999999
Q ss_pred cCCeEEEEc
Q psy11539 334 FKNTSYRLT 342 (530)
Q Consensus 334 ~~g~swRv~ 342 (530)
.+|+++...
T Consensus 407 ~tg~~~~~~ 415 (490)
T COG3670 407 ETGTSQVYS 415 (490)
T ss_pred cCCcEEEEe
Confidence 999999865
No 184
>PRK13684 Ycf48-like protein; Provisional
Probab=22.18 E-value=5.5e+02 Score=26.97 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=43.3
Q ss_pred eEEEEEEEeCCCcEEEEeCCCCCcccCccccCCCEEEEE-ECCCCcEEEEEECCCcccccCccccceEEEeecCCCCeEE
Q psy11539 240 ISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVF-DLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFA 318 (530)
Q Consensus 240 vSV~rv~ID~cgRLWVLDtG~~~~~~~~~~~c~PKLvvf-DL~Td~li~~y~~P~~v~~~~S~lndIvVDv~~~c~~~~A 318 (530)
.+++.+.+...+++|++-.+- .+.+ .-..++--+....|.. .....+.++++. .++.+
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G--------------~~~~~s~d~G~sW~~~~~~~~--~~~~~l~~v~~~-----~~~~~ 273 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGG--------------QIRFNDPDDLESWSKPIIPEI--TNGYGYLDLAYR-----TPGEI 273 (334)
T ss_pred ccceeeeEcCCCCEEEEecCC--------------EEEEccCCCCCccccccCCcc--ccccceeeEEEc-----CCCCE
Confidence 455566666677888774432 2233 2223333332333321 112234556654 23456
Q ss_pred EEecCCCCeEEEEEccCCeEEEEcC
Q psy11539 319 YVNDVFRYGLIVYDFFKNTSYRLTH 343 (530)
Q Consensus 319 YItDsg~~gLIVyDl~~g~swRv~h 343 (530)
|+. +..|.+......|++|+...
T Consensus 274 ~~~--G~~G~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 274 WAG--GGNGTLLVSKDGGKTWEKDP 296 (334)
T ss_pred EEE--cCCCeEEEeCCCCCCCeECC
Confidence 664 34577788999999999764
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=20.42 E-value=1.1e+03 Score=25.39 Aligned_cols=23 Identities=4% Similarity=-0.119 Sum_probs=12.6
Q ss_pred eEEEEecC-CCCeEEEEEccCCeE
Q psy11539 316 VFAYVNDV-FRYGLIVYDFFKNTS 338 (530)
Q Consensus 316 ~~AYItDs-g~~gLIVyDl~~g~s 338 (530)
..+|.+|. +..-|++++..++..
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCe
Confidence 45666664 345566666555533
Done!