RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11539
(530 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 257 bits (657), Expect = 4e-81
Identities = 81/371 (21%), Positives = 141/371 (38%), Gaps = 67/371 (18%)
Query: 151 VFRWKIMDFVFRDNKQKVNLIRSNKFIPENNLPLGIGI--WRSTIFLSFPKWKAGIPFTL 208
++WK + + + + P+N + +FL+ P+ +P+TL
Sbjct: 5 GYKWKQLLYNN---------VTPGSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPYTL 55
Query: 209 ASFNMND-----PSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNI 263
A + + SP+L + L S+++ +D C RLW++D G
Sbjct: 56 AEVDTKNSLGVKGKHSPLLNKFSGHK-----TGKELTSIYQPVIDDCRRLWVVDIGSVEY 110
Query: 264 LSSIQQLCP---PKIMVFDLKTNTL--IRKYILPTAQVFEGSLFSNIVTEVV---EDCDH 315
S + P P I+ +DLK + +Y PT V + + F +V DC
Sbjct: 111 RSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSE 170
Query: 316 VFAYVNDVFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP 375
F Y+ + R L +YD K S+ +THP E + + ++ + GIFG+ +
Sbjct: 171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERP-TKFDYGGKEYEFKAGIFGITLGD 229
Query: 376 ELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNSS 435
S + R Y+ + S+ + Y V+T +L+
Sbjct: 230 RDS-----------------------------EGNRPAYYLAGSAIKVYSVNTKELKQKG 260
Query: 436 RYVNSSDIDEYFHYLGSRFKNTQASASAINS-NGVMFYNLVTKHSVGCWNTKTKVYLPQT 494
+N LG+R K A A A + V+F+ V CWNT+ +
Sbjct: 261 GKLN-------PELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKN 313
Query: 495 QDIVQTSRDIL 505
D+V TS +
Sbjct: 314 TDVVYTSSRFV 324
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 153 bits (388), Expect = 2e-42
Identities = 52/337 (15%), Positives = 107/337 (31%), Gaps = 53/337 (15%)
Query: 180 NNLPLGIGIWRS-TIFLSFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYFDDSNCNS 238
+ P I + +FLS ++ +A L+P+P S + +
Sbjct: 16 SLAPGNITLTPDGRLFLSLHQFY-QPEMQVAELT------QDGLIPFPPQSG---NAIIT 65
Query: 239 LISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFE 298
+V + D +W++D G + PK++ +D N L R LP
Sbjct: 66 FDTVLGIKSDGNGIVWMLDNGNQSK-------SVPKLVAWDTLNNQLSRVIYLPPPITLS 118
Query: 299 GSLFSNIVTEVVEDCDHVFAYVND---VFRYGLIVYDFFKNTSYRLTHPYMYPEPTQSTY 355
S +++ D H F Y++D + LI D + R+ Y P
Sbjct: 119 NSFVNDLAV----DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174
Query: 356 ILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYF 415
++D + + V + + + ++Y
Sbjct: 175 VIDGVPVQIGQP-----------------------DGTVIRPHLGVNGIVLDAENEWLYL 211
Query: 416 HSMSSNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLV 475
M S Y + + DL N + +++ + +I+ + ++ +
Sbjct: 212 SPMHSTSMYRIKSADLSNLQ--LTDAELGSKIERYSEKP---ICDGISIDKDHNIYVGDL 266
Query: 476 TKHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEGE 512
++G + + Y D + D NF +G
Sbjct: 267 AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 5e-12
Identities = 60/403 (14%), Positives = 118/403 (29%), Gaps = 133/403 (33%)
Query: 156 IMDFVFRDNKQKVNLIRSNK-FIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMN 214
+ DF+ ++L + P+ L K+ P L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL------------LLKYLDCRPQDL------ 318
Query: 215 DPSE----SPILL--------PYPN-WSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVT 261
P E +P L W + NC+ L ++ S++ +
Sbjct: 319 -PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---------- 367
Query: 262 NILSSIQQLCPPKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVN 321
+ + ++ VF + I + ++ +++ V VN
Sbjct: 368 ---PAEYRKMFDRLSVFP--PSAHI------PTILLS-LIWFDVIKSDVMV------VVN 409
Query: 322 DVFRYGLIVYDFFKNTSYRLTHPYM-YPEPTQSTY-----ILDN----LKFRWVDGIFGM 371
+ +Y L+ K ++ + Y+ ++ Y I+D+ F D
Sbjct: 410 KLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD----- 463
Query: 372 AISPELSGYKYKRHPYEYYHYNVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDL 431
I P L Y +Y + HH K I +R F R ++ D
Sbjct: 464 LIPPYLDQY--------FYSHIGHHL------KNIEHPERMTLF------RMVFL---DF 500
Query: 432 R-------------NSSRYVNS--SDIDEYFHYLGSRFKNTQASASAINSNGVMFYNLVT 476
R N+S + + + Y Y+ N +N+ + +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVNA----ILDFLP 553
Query: 477 KHSVGCWNTKTKVYLPQTQDIVQTSRDILNFREEG-EEEEEKE 518
K +K D+++ + L +E EE K+
Sbjct: 554 KIEENLICSKYT-------DLLRIA---LMAEDEAIFEEAHKQ 586
Score = 28.7 bits (63), Expect = 6.8
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 152 FRWKIMDFVFRDNKQKVNLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASF 211
FR +DF F + K + + N N + ++ I + PK++ + + F
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDF 551
Query: 212 NMNDPSESPILLPY----------PNWSYFDDSN 235
E+ I Y + + F++++
Sbjct: 552 LPK-IEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 56/371 (15%), Positives = 111/371 (29%), Gaps = 109/371 (29%)
Query: 196 SFPKWKAGIPFTLASFNMNDPSESPILLPYPNWSYF--------DDSNCNSLISVFRMSV 247
F K +P F +D +P L F + S V + +
Sbjct: 36 QFNKI---LPEPTEGFAADDEPTTPAEL----VGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 248 DKCDRLWIMDTGVTNILSSIQQLCPPKIMVFDLKTNTLIRKYIL-------PTAQVFEGS 300
+ + ++ + + + + Q + +KT LI+ YI P + +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTL----VKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 301 LFSNIVTEVVEDCDHVFA------YVNDVFR--------YGLIVYDFFKNTSYRLTHPYM 346
LF + + A +D F Y ++V D K ++ L+
Sbjct: 145 LFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 347 YPEPTQSTY--ILDNLKFRWVDGIFGMAISPELSGYKYKRHPYEYY-------------- 390
+ + L+ L+ W++ P P + Y
Sbjct: 201 TTLDAEKVFTQGLNILE--WLEN-------PS-------NTPDKDYLLSIPISCPLIGVI 244
Query: 391 ---HY----NVHHYNGTNVDKTIRDDQRYMYFHSMSSNRHYYVSTTDLRNS----SRYVN 439
HY + + + R Y + + V+ + + S +V+
Sbjct: 245 QLAHYVVTAKLLGFTPGEL----RS-----YLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 440 SSDIDEYFHYLGSR----FKNTQASASAI-----NSNGVMFYNL----VTKHSVGCWNTK 486
++G R + NT S + N+ GV L +T+ V + K
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 487 TKVYLPQTQDI 497
T +LP + +
Sbjct: 356 TNSHLPAGKQV 366
Score = 31.2 bits (70), Expect = 1.0
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 42/145 (28%)
Query: 370 GMAISPELSGYKY-----------KRHPYEYYHYNVHH-----------YNGTNVDKTIR 407
GM + +L YK H + Y +++ + G K IR
Sbjct: 1630 GMGM--DL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 408 DDQRYMYFHSMS--SNRHYYVSTTDLRNSSRYVNSSDIDEYFHYLGSRFKNTQ------- 458
++ M F ++ + + +S+ Y S+ L S + TQ
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL----L-SATQFTQPALTLME 1740
Query: 459 -ASASAINSNGVMFYNLVTK-HSVG 481
A+ + S G++ + HS+G
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLG 1765
Score = 30.4 bits (68), Expect = 2.0
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 30/126 (23%)
Query: 414 YFHS--MSSNR-HYYVSTTDLRNSSRYVNSSD-IDEYF---HYLGSRFKNTQASA--SAI 464
F + + N H + N + V + + I Y F SA A+
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 465 NSNGVMFYNLVTKHSV----GCWNTKT---------KVYLPQTQDIVQTSRDILNFREEG 511
++ G NT + Y D+++ S + L+
Sbjct: 150 GEGNAQLV------AIFGGQG--NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 512 EEEEEK 517
+ EK
Sbjct: 202 TLDAEK 207
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 37.5 bits (86), Expect = 0.013
Identities = 14/76 (18%), Positives = 22/76 (28%)
Query: 74 QAPAVTTYRPMAPSGPSQPMRPAMGQKNNNQPPNTKSNAGPARPSTDQTKSFYPSVPSNG 133
Q PA P Q P+MGQ+ P + + + +T +VP
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Query: 134 HPSVPSNAYPSSSHFQ 149
+ P
Sbjct: 93 PNAYMQPQVPVQMGTP 108
Score = 34.0 bits (77), Expect = 0.14
Identities = 12/76 (15%), Positives = 17/76 (22%)
Query: 74 QAPAVTTYRPMAPSGPSQPMRPAMGQKNNNQPPNTKSNAGPARPSTDQTKSFYPSVPSNG 133
QA P+Q M P A PS Q + P+
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Query: 134 HPSVPSNAYPSSSHFQ 149
+ + H
Sbjct: 71 QQIDQATTSMNDMHLH 86
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 28.6 bits (63), Expect = 4.9
Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 26/223 (11%)
Query: 156 IMDFVFRDNKQKVNLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMND 215
+MD ++ I N + P GI + L N
Sbjct: 87 LMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD----------DNTVYLLVVNHPG 136
Query: 216 PSESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTG---VTNILSSIQQLCP 272
S + + + ++ + L ++ + + + + TN I
Sbjct: 137 SSSTVEVFKF----QEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192
Query: 273 PKIMVFDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYD 332
M L + + V EG F+N + D + Y+ ++ + + VY+
Sbjct: 193 SWEMHLGLAWSFVTYYSPNDVRVVAEGFDFAN---GINISPDGKYVYIAELLAHKIHVYE 249
Query: 333 FFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP 375
N + + ++DN+ V G + P
Sbjct: 250 KHANWTLTPLRVLSFD------TLVDNISVDPVTGDLWVGCHP 286
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Length = 1122
Score = 28.8 bits (63), Expect = 6.1
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 403 DKTIRDDQRYMYFHSMSSNR-HYYVSTT--DLRNSSRYVNSSDIDEYFHYLGSRF 454
D++ RDD RY++ ++ S + Y+S ++++S S + E Y+G
Sbjct: 705 DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 28.0 bits (62), Expect = 8.4
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 407 RDDQRYMYFHSMSSNRHYYVSTTDLRNSSRYVNSS 441
R++ Y++ Y + N SR++N
Sbjct: 189 REEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHH 223
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural
genomics, joint center F structural genomics, JCSG; HET:
MSE; 1.75A {Bacteroides vulgatus}
Length = 369
Score = 27.9 bits (61), Expect = 10.0
Identities = 29/204 (14%), Positives = 57/204 (27%), Gaps = 18/204 (8%)
Query: 158 DFVFRDNKQKVNLIRSNKFIPENNLPLGIGIWRSTIFLSFPKWKAGIPFTLASFNMNDPS 217
+F + + S P I + + + K AS ++
Sbjct: 117 NFQTPEGRFTPLSFGSYYNAPAFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQDLRTGE 176
Query: 218 ESPILLPYPNWSYFDDSNCNSLISVFRMSVDKCDRLWIMDTGVTNILSSIQQLCPPKIMV 277
I + YP + ++ + + F + + + + +MV
Sbjct: 177 VKWIPIFYPPI-FKEEYDNIAGGYGFSYDYNYKESRLVCGFFGYDS-----------LMV 224
Query: 278 FDLKTNTLIRKYILPTAQVFEGSLFSNIVTEVVEDCDHVFAYVNDVFRYGLIVYDFFKNT 337
D + IR Y + + E + + Y I+YD ++N
Sbjct: 225 TDDLKH--IRWYNAKSRYLKSMKPKLGNSMEGINAIIKLNENPR----YWHIMYDKYRNV 278
Query: 338 SYRLTHPYMYPEPTQSTYILDNLK 361
YR P +S Y K
Sbjct: 279 YYRFAEMPYKLAPNESPYETPKGK 302
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.408
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,951,513
Number of extensions: 454486
Number of successful extensions: 987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 25
Length of query: 530
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 432
Effective length of database: 3,965,535
Effective search space: 1713111120
Effective search space used: 1713111120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)