RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11539
         (530 letters)



>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
           {Mimivirus [TaxId: 315393]}
          Length = 128

 Score = 27.3 bits (60), Expect = 2.2
 Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 3/73 (4%)

Query: 47  NNFLNVDLKKLRPQSQNEKENRMPVSTQAPAVTTYRPMAPSGPSQPMRPAMGQKNNNQPP 106
            NF  V +K      +N  E      ++            SGP   +   + +  +    
Sbjct: 27  KNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISI---VYEGTDAISK 83

Query: 107 NTKSNAGPARPST 119
             +       P T
Sbjct: 84  IRRLQGNILTPGT 96


>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
           C-terminal domain {Bacillus stearothermophilus [TaxId:
           1422]}
          Length = 132

 Score = 27.0 bits (59), Expect = 3.5
 Identities = 7/20 (35%), Positives = 16/20 (80%)

Query: 488 KVYLPQTQDIVQTSRDILNF 507
            V+LP  +D+++T++ ++NF
Sbjct: 113 SVWLPNFKDVIETAKKVMNF 132


>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
           1406]}
          Length = 447

 Score = 26.7 bits (58), Expect = 7.1
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 331 YDFFKNTSYRLTHPYMYPEPTQSTYILDNLKFRWVDGIFGMAISP--ELSGYKYKRHPYE 388
            D      Y ++     PE         N+     D  + +      E+  Y  K    +
Sbjct: 287 IDMIGINYYSMSVNRFNPEAGFLQSEEINMGLPVTDIGWPVESRGLYEVLHYLQKYGNID 346

Query: 389 YYH-YNVHHYNGTNVDKTIRDDQRYMYFHS 417
            Y   N    N   V+  ++DD+R  Y   
Sbjct: 347 IYITENGACINDEVVNGKVQDDRRISYMQQ 376


>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
           dehydrogenase {Thermus thermophilus [TaxId: 274]}
          Length = 137

 Score = 25.5 bits (55), Expect = 9.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 486 KTKVYLPQTQDIVQTSRDILNF 507
           + K+YLP    I+  ++  L++
Sbjct: 116 QDKLYLPTVTRILNAAKRALDY 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,008,965
Number of extensions: 94487
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 17
Length of query: 530
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,171,896
Effective search space: 515634240
Effective search space used: 515634240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)