BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11542
         (187 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
 pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
 pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
 pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
          Length = 381

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 84  KRIFVTTPKFQPGIPVTLSTLSSKRA--NDGSH--LLEPFPNWSTHNEKDCDGLISVYRV 139
           +++F+  P+  P +P TL+ + +K +    G H  LL  F    T  E     L S+Y+ 
Sbjct: 38  EKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKE-----LTSIYQP 92

Query: 140 QIDECGKLWVLDTGKLNTFTGSPKKL--CNPQIVVYDLTK 177
            ID+C +LWV+D G +   +   K      P IV YDL +
Sbjct: 93  VIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQ 132


>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
           Selenomethionine Derivative
 pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
           Selenomethionine Derivative
          Length = 381

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 84  KRIFVTTPKFQPGIPVTLSTLSSKRA--NDGSH--LLEPFPNWSTHNEKDCDGLISVYRV 139
           +++F+  P+  P +P TL+ + +K +    G H  LL  F    T  E     L S+Y+ 
Sbjct: 38  EKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKE-----LTSIYQP 92

Query: 140 QIDECGKLWVLDTGKLNTFTGSPKKL--CNPQIVVYDLTK 177
            ID+C +LWV+D G +   +   K      P IV YDL +
Sbjct: 93  VIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQ 132


>pdb|3BZW|A Chain A, Crystal Structure Of A Putative Lipase From Bacteroides
           Thetaiotaomicron
 pdb|3BZW|B Chain B, Crystal Structure Of A Putative Lipase From Bacteroides
           Thetaiotaomicron
 pdb|3BZW|C Chain C, Crystal Structure Of A Putative Lipase From Bacteroides
           Thetaiotaomicron
 pdb|3BZW|D Chain D, Crystal Structure Of A Putative Lipase From Bacteroides
           Thetaiotaomicron
 pdb|3BZW|E Chain E, Crystal Structure Of A Putative Lipase From Bacteroides
           Thetaiotaomicron
 pdb|3BZW|F Chain F, Crystal Structure Of A Putative Lipase From Bacteroides
           Thetaiotaomicron
          Length = 274

 Score = 30.8 bits (68), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 99  VTLSTLSSKRANDGSHLLEPFPNWSTHNEKDCDGLISVYRVQIDECGKLWVLDTGKLNTF 158
           V L+ L    AN G   ++P  ++    +  C   I  Y   I E G +W +     N  
Sbjct: 164 VLLTPLHRSLANFGDKNVQPDESY----QNGCGEYIDAYVQAIKEAGNIWGIPVIDFNAV 219

Query: 159 TGSPKKLCNPQIVVYDLTKGDKIVPKTK 186
           TG    +    I  YD    D++ P TK
Sbjct: 220 TGXNPXVEEQLIYFYDAGY-DRLHPDTK 246


>pdb|2DRE|A Chain A, Crystal Structure Of Water-Soluble Chlorophyll Protein
           From Lepidium Virginicum At 2.00 Angstrom Resolution
 pdb|2DRE|B Chain B, Crystal Structure Of Water-Soluble Chlorophyll Protein
           From Lepidium Virginicum At 2.00 Angstrom Resolution
 pdb|2DRE|C Chain C, Crystal Structure Of Water-Soluble Chlorophyll Protein
           From Lepidium Virginicum At 2.00 Angstrom Resolution
 pdb|2DRE|D Chain D, Crystal Structure Of Water-Soluble Chlorophyll Protein
           From Lepidium Virginicum At 2.00 Angstrom Resolution
          Length = 180

 Score = 30.4 bits (67), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 86  IFVTTPKFQPGIPVTLSTLSSKRAND 111
           I  T+  +QPG+PVT+ST SS   ND
Sbjct: 49  IVRTSLPYQPGLPVTISTPSSSEGND 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.138    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,633,209
Number of Sequences: 62578
Number of extensions: 224824
Number of successful extensions: 308
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)