Query psy11542
Match_columns 187
No_of_seqs 176 out of 528
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 21:10:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01436 NHL: NHL repeat; Int 93.1 0.13 2.8E-06 29.8 3.0 23 133-155 1-23 (28)
2 PF07494 Reg_prop: Two compone 89.6 0.38 8.2E-06 26.9 2.4 15 135-149 6-20 (24)
3 PF13645 YkuD_2: L,D-transpept 81.3 3.2 6.8E-05 34.5 4.9 38 141-187 31-69 (176)
4 PF08450 SGL: SMP-30/Gluconola 79.4 4.9 0.00011 33.2 5.5 36 136-185 186-221 (246)
5 COG4257 Vgb Streptogramin lyas 77.3 3 6.6E-05 37.6 3.8 34 134-181 104-137 (353)
6 PF08450 SGL: SMP-30/Gluconola 75.0 11 0.00024 31.1 6.4 45 131-181 83-127 (246)
7 PLN02919 haloacid dehalogenase 71.7 26 0.00057 36.3 9.4 39 131-182 856-894 (1057)
8 TIGR02658 TTQ_MADH_Hv methylam 70.1 51 0.0011 30.1 10.0 43 139-185 253-296 (352)
9 TIGR02604 Piru_Ver_Nterm putat 68.1 12 0.00026 33.4 5.5 44 132-177 12-56 (367)
10 TIGR02276 beta_rpt_yvtn 40-res 67.4 15 0.00034 21.6 4.3 29 144-185 3-31 (42)
11 PF03022 MRJP: Major royal jel 67.2 54 0.0012 28.6 9.3 80 83-183 11-103 (287)
12 COG3386 Gluconolactonase [Carb 62.1 20 0.00044 31.9 5.7 53 131-186 108-160 (307)
13 KOG0641|consensus 60.2 20 0.00044 31.7 5.2 41 134-187 232-272 (350)
14 PF06433 Me-amine-dh_H: Methyl 60.1 12 0.00026 34.2 3.9 38 143-185 248-286 (342)
15 TIGR02604 Piru_Ver_Nterm putat 56.4 27 0.00057 31.2 5.5 24 131-154 181-204 (367)
16 PF01011 PQQ: PQQ enzyme repea 54.2 19 0.00042 21.6 3.0 17 168-184 10-26 (38)
17 COG3386 Gluconolactonase [Carb 53.9 25 0.00055 31.3 4.9 37 137-186 216-252 (307)
18 TIGR03032 conserved hypothetic 50.0 23 0.00049 32.4 3.9 24 144-180 212-235 (335)
19 PF03646 FlaG: FlaG protein; 43.3 25 0.00054 26.0 2.7 17 169-185 69-85 (107)
20 PF07995 GSDH: Glucose / Sorbo 42.5 23 0.00049 31.4 2.8 69 83-155 124-203 (331)
21 TIGR02658 TTQ_MADH_Hv methylam 41.4 2.8E+02 0.006 25.3 11.6 74 83-184 259-338 (352)
22 smart00564 PQQ beta-propeller 40.4 38 0.00083 19.0 2.7 17 168-184 16-32 (33)
23 PF03022 MRJP: Major royal jel 38.8 85 0.0018 27.4 5.8 61 83-157 196-259 (287)
24 PF13449 Phytase-like: Esteras 37.2 59 0.0013 28.6 4.6 41 136-184 87-127 (326)
25 PF03088 Str_synth: Strictosid 37.0 73 0.0016 23.4 4.3 42 138-180 2-49 (89)
26 PF13670 PepSY_2: Peptidase pr 35.1 82 0.0018 22.0 4.3 42 131-183 41-82 (83)
27 TIGR03606 non_repeat_PQQ dehyd 32.9 32 0.00069 32.5 2.3 26 131-156 227-252 (454)
28 PF14913 DPCD: DPCD protein fa 30.3 98 0.0021 26.3 4.5 54 134-187 109-169 (194)
29 KOG4499|consensus 30.2 77 0.0017 28.3 4.0 35 138-185 216-250 (310)
30 COG4257 Vgb Streptogramin lyas 29.6 56 0.0012 29.7 3.1 20 135-154 277-296 (353)
31 PRK08868 flagellar protein Fla 27.7 54 0.0012 26.5 2.5 17 170-186 104-120 (144)
32 PF06977 SdiA-regulated: SdiA- 27.1 2.1E+02 0.0044 24.8 6.1 38 135-186 23-61 (248)
33 smart00284 OLF Olfactomedin-li 26.6 3E+02 0.0064 24.1 7.1 30 143-182 184-214 (255)
34 COG3292 Predicted periplasmic 26.4 82 0.0018 31.2 3.8 35 133-182 164-198 (671)
35 COG0139 HisI Phosphoribosyl-AM 26.4 86 0.0019 24.3 3.2 29 124-152 62-92 (111)
36 PLN02919 haloacid dehalogenase 26.1 1.3E+02 0.0028 31.4 5.4 37 132-181 802-838 (1057)
37 PRK08452 flagellar protein Fla 25.2 63 0.0014 25.3 2.4 18 168-185 84-101 (124)
38 PF14398 ATPgrasp_YheCD: YheC/ 24.7 61 0.0013 27.9 2.4 18 136-153 213-230 (262)
39 TIGR03866 PQQ_ABC_repeats PQQ- 24.3 2E+02 0.0043 23.0 5.3 20 167-186 178-197 (300)
40 KOG2983|consensus 23.7 71 0.0015 28.8 2.7 20 135-154 231-250 (334)
41 COG3391 Uncharacterized conser 22.7 1.7E+02 0.0037 26.3 5.0 38 135-183 117-155 (381)
42 KOG2291|consensus 22.4 2.3E+02 0.0051 27.8 6.0 33 85-123 109-144 (602)
43 PRK07738 flagellar protein Fla 22.2 79 0.0017 24.6 2.4 18 168-185 77-94 (117)
44 PF03284 PHZA_PHZB: Phenazine 22.0 76 0.0016 26.0 2.3 58 115-182 74-134 (162)
45 PF06739 SBBP: Beta-propeller 21.0 2E+02 0.0043 17.5 3.6 21 130-150 9-29 (38)
46 PF10644 Misat_Tub_SegII: Misa 20.8 65 0.0014 24.4 1.7 14 165-178 55-68 (115)
47 TIGR02334 prpF probable AcnD-a 20.4 2.8E+02 0.0061 25.9 6.0 85 76-183 58-144 (390)
No 1
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=93.07 E-value=0.13 Score=29.75 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.3
Q ss_pred ceEEeEEEEeCCCcEEEEeCCCC
Q psy11542 133 LISVYRVQIDECGKLWVLDTGKL 155 (187)
Q Consensus 133 lvsV~~v~iD~~grLWVLDtG~~ 155 (187)
|....++.+|.+|+|||.|++.-
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCT
T ss_pred CcCCcEEEEeCCCCEEEEECCCC
Confidence 34578999999999999998863
No 2
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=89.63 E-value=0.38 Score=26.95 Aligned_cols=15 Identities=33% Similarity=0.904 Sum_probs=12.9
Q ss_pred EEeEEEEeCCCcEEE
Q psy11542 135 SVYRVQIDECGKLWV 149 (187)
Q Consensus 135 sV~~v~iD~~grLWV 149 (187)
.|+.|..|.+|+|||
T Consensus 6 ~I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWI 20 (24)
T ss_dssp CEEEEEE-TTSCEEE
T ss_pred eEEEEEEcCCcCEEE
Confidence 588999999999998
No 3
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=81.35 E-value=3.2 Score=34.53 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=31.9
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEE-EecCC
Q psy11542 141 IDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIV-PKTKH 187 (187)
Q Consensus 141 iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir-~y~~~ 187 (187)
+...++|-|+|-..+.. .+++++||+++++++. .++-|
T Consensus 31 ~~~~~~l~iIDfs~pS~---------~~R~~v~Dl~~~~~l~~~~VaH 69 (176)
T PF13645_consen 31 IYNKDILTIIDFSKPSG---------EKRFFVIDLKKGKLLYNTLVAH 69 (176)
T ss_pred CCCCCeEEEEECCCCCC---------CCeEEEEECCCCEEEEeeeeec
Confidence 44678999999999875 6899999999999996 57766
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=79.36 E-value=4.9 Score=33.20 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=27.7
Q ss_pred EeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEec
Q psy11542 136 VYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 136 V~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~ 185 (187)
.-++.+|..|+|||-+.+. -+|++||.. ++++++|.
T Consensus 186 pDG~~vD~~G~l~va~~~~-------------~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGG-------------GRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp EEEEEEBTTS-EEEEEETT-------------TEEEEEETT-SCEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCC-------------CEEEEECCC-ccEEEEEc
Confidence 5578999999999987643 368999988 88888774
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.31 E-value=3 Score=37.63 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=26.3
Q ss_pred eEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEE
Q psy11542 134 ISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKI 181 (187)
Q Consensus 134 vsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~li 181 (187)
-+.+.|+++++|-+||.|+|. . |..+|.||.++.
T Consensus 104 a~Phgiv~gpdg~~Witd~~~-a-------------I~R~dpkt~evt 137 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGL-A-------------IGRLDPKTLEVT 137 (353)
T ss_pred CCCceEEECCCCCeeEecCcc-e-------------eEEecCcccceE
Confidence 356789999999999999996 2 566666666554
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=74.97 E-value=11 Score=31.07 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCceEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEE
Q psy11542 131 DGLISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKI 181 (187)
Q Consensus 131 ~~lvsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~li 181 (187)
..+.....+.+|++|+||+=|++.... ....+.+|+.+|.. +++.
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~-----~~~~~g~v~~~~~~-~~~~ 127 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGA-----SGIDPGSVYRIDPD-GKVT 127 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCT-----TCGGSEEEEEEETT-SEEE
T ss_pred cccCCCceEEEcCCCCEEEEecCCCcc-----ccccccceEEECCC-CeEE
Confidence 368999999999999999999987543 11111788888888 5543
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=71.68 E-value=26 Score=36.28 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=31.3
Q ss_pred CCceEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEE
Q psy11542 131 DGLISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIV 182 (187)
Q Consensus 131 ~~lvsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir 182 (187)
..|....+|.+|++|+|+|.|++.- .|.+||++++++++
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn-------------~Irvid~~~~~~~~ 894 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNS-------------LIRYLDLNKGEAAE 894 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCC-------------EEEEEECCCCccce
Confidence 4577889999999999999998753 36788888877643
No 8
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=70.10 E-value=51 Score=30.05 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=29.4
Q ss_pred EEEe-CCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEec
Q psy11542 139 VQID-ECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 139 v~iD-~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~ 185 (187)
+.+. +.+||||+-.|.... . -....-.+.+||++|.++++++.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~---t-hk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKW---T-HKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred EEEcCCCCEEEEEecCCccc---c-ccCCCCEEEEEECCCCeEEEEEe
Confidence 6666 368999965554422 1 12234489999999999999875
No 9
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=68.08 E-value=12 Score=33.41 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=28.7
Q ss_pred CceEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCC-CeEEEEECCC
Q psy11542 132 GLISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCN-PQIVVYDLTK 177 (187)
Q Consensus 132 ~lvsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~-PKLv~~DL~T 177 (187)
.+.++..|.+|++|||||.++..-.. ........ -+|++++-.+
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~--~~~~~~~~~~rI~~l~d~d 56 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSR--PAGRQGPLGDRILILEDAD 56 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCC--CCCCCCCCCCEEEEEEcCC
Confidence 37788899999999999999854221 11111122 2788887653
No 10
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=67.41 E-value=15 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEec
Q psy11542 144 CGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 144 ~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~ 185 (187)
.++|||.+.+. -+|.+||+++.++++++.
T Consensus 3 ~~~lyv~~~~~-------------~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 3 GTKLYVTNSGS-------------NTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCEEEEEeCCC-------------CEEEEEECCCCeEEEEEE
Confidence 45688887652 358889999999988763
No 11
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=67.24 E-value=54 Score=28.63 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=46.1
Q ss_pred CCcEEEEccCC---CC----CCCceEEEEeCCCCCCCCcccccCCCCCcCCCCCCCCceEEeEEEEeC----C--CcEEE
Q psy11542 83 EKRIFVTTPKF---QP----GIPVTLSTLSSKRANDGSHLLEPFPNWSTHNEKDCDGLISVYRVQIDE----C--GKLWV 149 (187)
Q Consensus 83 ~gRlFvt~PR~---~~----gvP~TLa~v~~~~~~~~~p~l~PYP~~~wn~~~~~~~lvsV~~v~iD~----~--grLWV 149 (187)
.|||+|-=.-. .. --|+.|..++... +.--+-.+||..... ..++ ...++||. | +..+|
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t--~~li~~~~~p~~~~~----~~s~--lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKT--NQLIRRYPFPPDIAP----PDSF--LNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTT--TCEEEEEE--CCCS-----TCGG--EEEEEEECTTTTS-SEEEEE
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCC--CcEEEEEECChHHcc----cccc--cceEEEEccCCCCcceEEEE
Confidence 58998853322 11 1267899998764 222234466653222 1223 44566665 4 78999
Q ss_pred EeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEE
Q psy11542 150 LDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVP 183 (187)
Q Consensus 150 LDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~ 183 (187)
=|+|.. .|++||+++++--|.
T Consensus 83 tD~~~~-------------glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 83 TDSGGP-------------GLIVYDLATGKSWRV 103 (287)
T ss_dssp EETTTC-------------EEEEEETTTTEEEEE
T ss_pred eCCCcC-------------cEEEEEccCCcEEEE
Confidence 999853 599999999987554
No 12
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=62.11 E-value=20 Score=31.87 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=34.1
Q ss_pred CCceEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEecC
Q psy11542 131 DGLISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKTK 186 (187)
Q Consensus 131 ~~lvsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~~ 186 (187)
..+......++|++|++|+=|++..+ .+.........|..+|. .+++++....
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~--~~~~~~~~~G~lyr~~p-~g~~~~l~~~ 160 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFD--LGKSEERPTGSLYRVDP-DGGVVRLLDD 160 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccc--cCccccCCcceEEEEcC-CCCEEEeecC
Confidence 34566778899999999999999311 11111111228999998 5666665543
No 13
>KOG0641|consensus
Probab=60.25 E-value=20 Score=31.73 Aligned_cols=41 Identities=29% Similarity=0.517 Sum_probs=33.8
Q ss_pred eEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEecCC
Q psy11542 134 ISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKTKH 187 (187)
Q Consensus 134 vsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~~~ 187 (187)
..|-.|.+|+.||| |-+|..+. .-..||++-++.|++|.-|
T Consensus 232 savaav~vdpsgrl--l~sg~~ds-----------sc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRL--LASGHADS-----------SCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred ceeEEEEECCCcce--eeeccCCC-----------ceEEEEeeCCceeeeeCCC
Confidence 45888999999998 44777665 4688999999999999776
No 14
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=60.11 E-value=12 Score=34.20 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=26.5
Q ss_pred CCCcEEEE-eCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEec
Q psy11542 143 ECGKLWVL-DTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 143 ~~grLWVL-DtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~ 185 (187)
+.+||+|| +.|.... -...+-.|++||++|++.++|+.
T Consensus 248 ~~~rlyvLMh~g~~gs-----HKdpgteVWv~D~~t~krv~Ri~ 286 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGS-----HKDPGTEVWVYDLKTHKRVARIP 286 (342)
T ss_dssp TTTEEEEEEEE--TT------TTS-EEEEEEEETTTTEEEEEEE
T ss_pred ccCeEEEEecCCCCCC-----ccCCceEEEEEECCCCeEEEEEe
Confidence 68899987 4443222 33456689999999999999985
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=56.44 E-value=27 Score=31.22 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.8
Q ss_pred CCceEEeEEEEeCCCcEEEEeCCC
Q psy11542 131 DGLISVYRVQIDECGKLWVLDTGK 154 (187)
Q Consensus 131 ~~lvsV~~v~iD~~grLWVLDtG~ 154 (187)
.++.+.+++.+|+.|+||+-|.+.
T Consensus 181 ~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 181 HGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCcCCCccceECCCCCEEEEccCC
Confidence 578999999999999999999964
No 16
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.24 E-value=19 Score=21.63 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=13.9
Q ss_pred CeEEEEECCCCcEEEEe
Q psy11542 168 PQIVVYDLTKGDKIVPK 184 (187)
Q Consensus 168 PKLv~~DL~Td~lir~y 184 (187)
-.|+++|.+|++++=+|
T Consensus 10 g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKF 26 (38)
T ss_dssp SEEEEEETTTTSEEEEE
T ss_pred CEEEEEECCCCCEEEee
Confidence 47899999999988665
No 17
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=53.91 E-value=25 Score=31.27 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=26.3
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEecC
Q psy11542 137 YRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKTK 186 (187)
Q Consensus 137 ~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~~ 186 (187)
=++.+|..|.||+ .+..+ .-+|.+|+.. ++++++|..
T Consensus 216 DG~~vDadG~lw~--~a~~~----------g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 216 DGMAVDADGNLWV--AAVWG----------GGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred CceEEeCCCCEEE--ecccC----------CceEEEECCC-CcEEEEEEC
Confidence 3567788888887 22221 2479999999 999988753
No 18
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=50.02 E-value=23 Score=32.39 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=17.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcE
Q psy11542 144 CGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDK 180 (187)
Q Consensus 144 ~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~l 180 (187)
+|+||++|+|.-. +..+|++|++.
T Consensus 212 dgrLwvldsgtGe-------------v~~vD~~~G~~ 235 (335)
T TIGR03032 212 QGKLWLLNSGRGE-------------LGYVDPQAGKF 235 (335)
T ss_pred CCeEEEEECCCCE-------------EEEEcCCCCcE
Confidence 6999999999743 56666666644
No 19
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=43.25 E-value=25 Score=25.99 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.4
Q ss_pred eEEEEECCCCcEEEEec
Q psy11542 169 QIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 169 KLv~~DL~Td~lir~y~ 185 (187)
-+-++|..||++||.|+
T Consensus 69 vVkViD~~T~eVIRqIP 85 (107)
T PF03646_consen 69 VVKVIDKETGEVIRQIP 85 (107)
T ss_dssp EEEEEETTT-SEEEEE-
T ss_pred EEEEEECCCCcEEEeCC
Confidence 46789999999999987
No 20
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=42.48 E-value=23 Score=31.40 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=37.9
Q ss_pred CCcEEEEccCCCC--------CCCceEEEEeCCCCCCCCcccccCCCCCcCCCCC--CCCceEEeEEEEeCC-CcEEEEe
Q psy11542 83 EKRIFVTTPKFQP--------GIPVTLSTLSSKRANDGSHLLEPFPNWSTHNEKD--CDGLISVYRVQIDEC-GKLWVLD 151 (187)
Q Consensus 83 ~gRlFvt~PR~~~--------gvP~TLa~v~~~~~~~~~p~l~PYP~~~wn~~~~--~~~lvsV~~v~iD~~-grLWVLD 151 (187)
||+|||++=--.. .....+-.|..++ .-|.--||-+-+ ..... +.+|.+.+++..|+. |+||+.|
T Consensus 124 DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG---~~p~dnP~~~~~-~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d 199 (331)
T PF07995_consen 124 DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG---SIPADNPFVGDD-GADSEIYAYGLRNPFGLAFDPNTGRLWAAD 199 (331)
T ss_dssp TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS---SB-TTSTTTTST-TSTTTEEEE--SEEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCCCCcccccccccccceEEEecccC---cCCCCCccccCC-CceEEEEEeCCCccccEEEECCCCcEEEEc
Confidence 6899998854221 1123455565543 122233332211 00011 257999999999998 9999999
Q ss_pred CCCC
Q psy11542 152 TGKL 155 (187)
Q Consensus 152 tG~~ 155 (187)
.|.-
T Consensus 200 ~G~~ 203 (331)
T PF07995_consen 200 NGPD 203 (331)
T ss_dssp E-SS
T ss_pred cCCC
Confidence 9874
No 21
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=41.41 E-value=2.8e+02 Score=25.31 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=44.0
Q ss_pred CCcEEEEccCCCC---CCC-ceEEEEeCCCCCCCCcccccC-CCCCcCCCCCCCCceEEeEEEEeCCCc-EEEEeCCCCC
Q psy11542 83 EKRIFVTTPKFQP---GIP-VTLSTLSSKRANDGSHLLEPF-PNWSTHNEKDCDGLISVYRVQIDECGK-LWVLDTGKLN 156 (187)
Q Consensus 83 ~gRlFvt~PR~~~---gvP-~TLa~v~~~~~~~~~p~l~PY-P~~~wn~~~~~~~lvsV~~v~iD~~gr-LWVLDtG~~~ 156 (187)
.+|+||.+..-.. --| -.+..|+... .+..-+ |- =..+.+|.+.++|+ +-++-.+.-+
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t-----~kvi~~i~v-----------G~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT-----GKRLRKIEL-----------GHEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC-----CeEEEEEeC-----------CCceeeEEECCCCCeEEEEeCCCCC
Confidence 3999997653221 123 3678877543 122222 21 02466788888887 3333444333
Q ss_pred CCCCCCCccCCCeEEEEECCCCcEEEEe
Q psy11542 157 TFTGSPKKLCNPQIVVYDLTKGDKIVPK 184 (187)
Q Consensus 157 ~~~~~~~~~~~PKLv~~DL~Td~lir~y 184 (187)
. |.+||..|.++++++
T Consensus 323 ~------------VsViD~~t~k~i~~i 338 (352)
T TIGR02658 323 T------------LYIFDAETGKELSSV 338 (352)
T ss_pred c------------EEEEECcCCeEEeee
Confidence 2 889999999999987
No 22
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=40.39 E-value=38 Score=18.98 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=13.4
Q ss_pred CeEEEEECCCCcEEEEe
Q psy11542 168 PQIVVYDLTKGDKIVPK 184 (187)
Q Consensus 168 PKLv~~DL~Td~lir~y 184 (187)
-+|+++|.++++++-++
T Consensus 16 g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEEcccCcEEEEc
Confidence 36889999998887664
No 23
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=38.82 E-value=85 Score=27.40 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=37.5
Q ss_pred CCcEEEEccCCCCCCCceEEEEeCCCCCCCCcccccCCCCCcCC-CCCCCCceEEeEEEEeC--CCcEEEEeCCCCCC
Q psy11542 83 EKRIFVTTPKFQPGIPVTLSTLSSKRANDGSHLLEPFPNWSTHN-EKDCDGLISVYRVQIDE--CGKLWVLDTGKLNT 157 (187)
Q Consensus 83 ~gRlFvt~PR~~~gvP~TLa~v~~~~~~~~~p~l~PYP~~~wn~-~~~~~~lvsV~~v~iD~--~grLWVLDtG~~~~ 157 (187)
+|.+|++...- .++.....+ +||.-..... ..|...|+.+-++.+|. .|.|||+=.-....
T Consensus 196 ~G~ly~~~~~~-----~aI~~w~~~---------~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 196 NGNLYFTDVEQ-----NAIGCWDPD---------GPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp TTEEEEEECCC-----TEEEEEETT---------TSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SS
T ss_pred CCcEEEecCCC-----CeEEEEeCC---------CCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHh
Confidence 59999998762 367777655 3554333322 13556699999999999 99999998776554
No 24
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=37.19 E-value=59 Score=28.64 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=32.4
Q ss_pred EeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEe
Q psy11542 136 VYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPK 184 (187)
Q Consensus 136 V~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y 184 (187)
.-+|+++..|.+||-|-|.... ...|.|+.||+. +++++++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~-------~~~p~I~~~~~~-G~~~~~~ 127 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTG-------GIPPRIRRFDLD-GRVIRRF 127 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCC-------CCCCEEEEECCC-CcccceE
Confidence 3455667899999999998543 128999999988 8888876
No 25
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=37.00 E-value=73 Score=23.39 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=24.0
Q ss_pred EEEEeCC-CcEEEEeCCCCCCCCCCC-----CccCCCeEEEEECCCCcE
Q psy11542 138 RVQIDEC-GKLWVLDTGKLNTFTGSP-----KKLCNPQIVVYDLTKGDK 180 (187)
Q Consensus 138 ~v~iD~~-grLWVLDtG~~~~~~~~~-----~~~~~PKLv~~DL~Td~l 180 (187)
++.||.+ |.+++-|+-..-. ..+- ...+.-+|+.||++|+++
T Consensus 2 dldv~~~~g~vYfTdsS~~~~-~~~~~~~~le~~~~GRll~ydp~t~~~ 49 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYD-RRDWVYDLLEGRPTGRLLRYDPSTKET 49 (89)
T ss_dssp EEEE-TTT--EEEEES-SS---TTGHHHHHHHT---EEEEEEETTTTEE
T ss_pred ceeEecCCCEEEEEeCccccC-ccceeeeeecCCCCcCEEEEECCCCeE
Confidence 5788888 9999999965322 1110 134566999999999975
No 26
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=35.14 E-value=82 Score=22.04 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=30.5
Q ss_pred CCceEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEE
Q psy11542 131 DGLISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVP 183 (187)
Q Consensus 131 ~~lvsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~ 183 (187)
.+. .|..+.+|+.|. |-++.-..++ ..-=+.+|.+|++++++
T Consensus 41 ~G~-~v~~ve~~~~g~-yev~~~~~dG---------~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 41 QGY-QVREVEFDDDGC-YEVEARDKDG---------KKVEVYVDPATGEVVKE 82 (83)
T ss_pred cCC-ceEEEEEcCCCE-EEEEEEECCC---------CEEEEEEcCCCCeEeec
Confidence 567 899999965444 8888433332 34468899999999875
No 27
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=32.89 E-value=32 Score=32.54 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.2
Q ss_pred CCceEEeEEEEeCCCcEEEEeCCCCC
Q psy11542 131 DGLISVYRVQIDECGKLWVLDTGKLN 156 (187)
Q Consensus 131 ~~lvsV~~v~iD~~grLWVLDtG~~~ 156 (187)
-++.+.+++.+|+.|+||+-|.|.-.
T Consensus 227 ~G~RNp~Gla~dp~G~Lw~~e~Gp~~ 252 (454)
T TIGR03606 227 YGHRNPQGLAFTPDGTLYASEQGPNS 252 (454)
T ss_pred EeccccceeEECCCCCEEEEecCCCC
Confidence 47899999999999999999999743
No 28
>PF14913 DPCD: DPCD protein family
Probab=30.27 E-value=98 Score=26.25 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=38.9
Q ss_pred eEEeEEEEeCCCcEEEEeCCCCCCC-----CC--CCCccCCCeEEEEECCCCcEEEEecCC
Q psy11542 134 ISVYRVQIDECGKLWVLDTGKLNTF-----TG--SPKKLCNPQIVVYDLTKGDKIVPKTKH 187 (187)
Q Consensus 134 vsV~~v~iD~~grLWVLDtG~~~~~-----~~--~~~~~~~PKLv~~DL~Td~lir~y~~~ 187 (187)
.+||.|.+|..+|=-|+=|-.-.++ ++ .....-.+.-+-|+...|+||=+|.|+
T Consensus 109 ~dvYsVtvd~~~r~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 109 KDVYSVTVDEDERCIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKP 169 (194)
T ss_pred ccceEEEEcCCCcEEEEECcCccceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecCc
Confidence 6899999999999888888654331 10 001122456788999999999999874
No 29
>KOG4499|consensus
Probab=30.24 E-value=77 Score=28.28 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.1
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEec
Q psy11542 138 RVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 138 ~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~ 185 (187)
++.||..|.|||-= - ...++..+|+.|+++++.+.
T Consensus 216 Gm~ID~eG~L~Va~---~----------ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 216 GMTIDTEGNLYVAT---F----------NGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred cceEccCCcEEEEE---e----------cCcEEEEECCCCCcEEEEEE
Confidence 56788899999831 1 24678999999999998774
No 30
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=29.63 E-value=56 Score=29.75 Aligned_cols=20 Identities=20% Similarity=0.727 Sum_probs=16.4
Q ss_pred EEeEEEEeCCCcEEEEeCCC
Q psy11542 135 SVYRVQIDECGKLWVLDTGK 154 (187)
Q Consensus 135 sV~~v~iD~~grLWVLDtG~ 154 (187)
-.+++++|..||+|.=|.+.
T Consensus 277 rpys~rVD~~grVW~sea~a 296 (353)
T COG4257 277 RPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred CcceeeeccCCcEEeecccc
Confidence 36889999999999966553
No 31
>PRK08868 flagellar protein FlaG; Provisional
Probab=27.69 E-value=54 Score=26.50 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.7
Q ss_pred EEEEECCCCcEEEEecC
Q psy11542 170 IVVYDLTKGDKIVPKTK 186 (187)
Q Consensus 170 Lv~~DL~Td~lir~y~~ 186 (187)
+-++|.+||++||.|+-
T Consensus 104 VkViD~~T~EVIRQIP~ 120 (144)
T PRK08868 104 VTIYEASTGDIIRQIPD 120 (144)
T ss_pred EEEEECCCCceeeeCCC
Confidence 66789999999999873
No 32
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=27.10 E-value=2.1e+02 Score=24.76 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=26.5
Q ss_pred EEeEEEEeC-CCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEEecC
Q psy11542 135 SVYRVQIDE-CGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVPKTK 186 (187)
Q Consensus 135 sV~~v~iD~-~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~y~~ 186 (187)
.+-++..|+ .++||++=- .++.|+.+|+ +++++|+|.+
T Consensus 23 e~SGLTy~pd~~tLfaV~d-------------~~~~i~els~-~G~vlr~i~l 61 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD-------------EPGEIYELSL-DGKVLRRIPL 61 (248)
T ss_dssp -EEEEEEETTTTEEEEEET-------------TTTEEEEEET-T--EEEEEE-
T ss_pred CccccEEcCCCCeEEEEEC-------------CCCEEEEEcC-CCCEEEEEeC
Confidence 467888886 588998733 2577999997 5899999875
No 33
>smart00284 OLF Olfactomedin-like domains.
Probab=26.57 E-value=3e+02 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCccCCCe-EEEEECCCCcEEE
Q psy11542 143 ECGKLWVLDTGKLNTFTGSPKKLCNPQ-IVVYDLTKGDKIV 182 (187)
Q Consensus 143 ~~grLWVLDtG~~~~~~~~~~~~~~PK-Lv~~DL~Td~lir 182 (187)
.||.|.++|+.... ..+ -.+||++|++-..
T Consensus 184 vCGvLY~~~s~~~~----------~~~I~yayDt~t~~~~~ 214 (255)
T smart00284 184 ICGILYVTRSLGSK----------GEKVFYAYDTNTGKEGH 214 (255)
T ss_pred EeeEEEEEccCCCC----------CcEEEEEEECCCCccce
Confidence 49999999984322 223 3689999987543
No 34
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=26.39 E-value=82 Score=31.17 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=26.1
Q ss_pred ceEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEE
Q psy11542 133 LISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIV 182 (187)
Q Consensus 133 lvsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir 182 (187)
=..|+++.+|..|+||| |..++ |..||-.|++.++
T Consensus 164 d~~V~aLv~D~~g~lWv---gT~dG------------L~~fd~~~gkalq 198 (671)
T COG3292 164 DTPVVALVFDANGRLWV---GTPDG------------LSYFDAGRGKALQ 198 (671)
T ss_pred CccceeeeeeccCcEEE---ecCCc------------ceEEccccceEEE
Confidence 35799999999999998 55554 6666666666654
No 35
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=26.36 E-value=86 Score=24.34 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=21.0
Q ss_pred cCCCCCCCCceEEeEEEEe-CCCcEEE-EeC
Q psy11542 124 THNEKDCDGLISVYRVQID-ECGKLWV-LDT 152 (187)
Q Consensus 124 wn~~~~~~~lvsV~~v~iD-~~grLWV-LDt 152 (187)
|.++.....++.|..|++| +.|.|++ ++.
T Consensus 62 W~KGetSG~~q~v~~i~~DCD~Dall~~V~q 92 (111)
T COG0139 62 WTKGETSGHTQKVVEIRLDCDGDALLLLVEQ 92 (111)
T ss_pred eccccccCceEEEEEEEcCCCCCEEEEEEEe
Confidence 7777777889999999998 3344554 444
No 36
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=26.10 E-value=1.3e+02 Score=31.39 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=27.8
Q ss_pred CceEEeEEEEeCCCcEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEE
Q psy11542 132 GLISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKI 181 (187)
Q Consensus 132 ~lvsV~~v~iD~~grLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~li 181 (187)
.|.+..++.+|++|.|||-|++.- +|.+||+.++.+.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~-------------rIrviD~~tg~v~ 838 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNH-------------KIKKLDPATKRVT 838 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCC-------------EEEEEECCCCeEE
Confidence 467788999999999999998752 3666666665554
No 37
>PRK08452 flagellar protein FlaG; Provisional
Probab=25.23 E-value=63 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.6
Q ss_pred CeEEEEECCCCcEEEEec
Q psy11542 168 PQIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 168 PKLv~~DL~Td~lir~y~ 185 (187)
.-+-++|.+|+++||.++
T Consensus 84 ~vVkVvD~~T~eVIRqIP 101 (124)
T PRK08452 84 LVVSVKEANGGKVIREIP 101 (124)
T ss_pred EEEEEEECCCCceeeeCC
Confidence 447789999999999987
No 38
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=24.69 E-value=61 Score=27.88 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=15.2
Q ss_pred EeEEEEeCCCcEEEEeCC
Q psy11542 136 VYRVQIDECGKLWVLDTG 153 (187)
Q Consensus 136 V~~v~iD~~grLWVLDtG 153 (187)
=.++-||.+|++|+++.=
T Consensus 213 GiDl~iD~~g~iWliEvN 230 (262)
T PF14398_consen 213 GIDLGIDKNGKIWLIEVN 230 (262)
T ss_pred EEEEEEcCCCCEEEEEEe
Confidence 457789999999999973
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=24.25 E-value=2e+02 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=15.9
Q ss_pred CCeEEEEECCCCcEEEEecC
Q psy11542 167 NPQIVVYDLTKGDKIVPKTK 186 (187)
Q Consensus 167 ~PKLv~~DL~Td~lir~y~~ 186 (187)
..+|.+||++++++++++.+
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred CCEEEEEEcCcceeeeeeee
Confidence 35788999999998887753
No 40
>KOG2983|consensus
Probab=23.71 E-value=71 Score=28.78 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=17.6
Q ss_pred EEeEEEEeCCCcEEEEeCCC
Q psy11542 135 SVYRVQIDECGKLWVLDTGK 154 (187)
Q Consensus 135 sV~~v~iD~~grLWVLDtG~ 154 (187)
-|+.|+|+..+|+|++|---
T Consensus 231 fvfDVYi~k~~kv~lID~Np 250 (334)
T KOG2983|consen 231 FVFDVYITKERKVWLIDFNP 250 (334)
T ss_pred eeEEEEecCCCcEEEEeccC
Confidence 48999999999999999743
No 41
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=1.7e+02 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=28.7
Q ss_pred EEeEEEEeCCC-cEEEEeCCCCCCCCCCCCccCCCeEEEEECCCCcEEEE
Q psy11542 135 SVYRVQIDECG-KLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKIVP 183 (187)
Q Consensus 135 sV~~v~iD~~g-rLWVLDtG~~~~~~~~~~~~~~PKLv~~DL~Td~lir~ 183 (187)
..+.+.+|+.+ .+||.|.|.-+ -.+.++|..|++++++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~-----------~~vsvid~~t~~~~~~ 155 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGN-----------NTVSVIDAATNKVTAT 155 (381)
T ss_pred CCceEEECCCCCEEEEEecccCC-----------ceEEEEeCCCCeEEEE
Confidence 56778888766 89999998611 2578888888888776
No 42
>KOG2291|consensus
Probab=22.38 E-value=2.3e+02 Score=27.81 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=21.2
Q ss_pred cEE-EEccC-CCCCCCceEEEEe-CCCCCCCCcccccCCCCC
Q psy11542 85 RIF-VTTPK-FQPGIPVTLSTLS-SKRANDGSHLLEPFPNWS 123 (187)
Q Consensus 85 RlF-vt~PR-~~~gvP~TLa~v~-~~~~~~~~p~l~PYP~~~ 123 (187)
|.| |++|+ ..+|-..||.... ..+ .++|||..=
T Consensus 109 ~~y~v~lp~pl~pge~vTl~V~~~~t~------vl~P~Pe~I 144 (602)
T KOG2291|consen 109 RVYTVTLPNPLSPGEKVTLIVEAVLTH------VLRPLPEEI 144 (602)
T ss_pred ceEEEeCCCCCCCCceEEEEEEeeccc------CcccChhhh
Confidence 454 67777 5567667765543 233 799999753
No 43
>PRK07738 flagellar protein FlaG; Provisional
Probab=22.25 E-value=79 Score=24.58 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=15.2
Q ss_pred CeEEEEECCCCcEEEEec
Q psy11542 168 PQIVVYDLTKGDKIVPKT 185 (187)
Q Consensus 168 PKLv~~DL~Td~lir~y~ 185 (187)
.-+-++|-+|+++||.|+
T Consensus 77 ~vVkVvD~~T~EVIRQIP 94 (117)
T PRK07738 77 YYVQVVDERTNEVIREIP 94 (117)
T ss_pred EEEEEEECCCCeeeeeCC
Confidence 346688999999999987
No 44
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=21.99 E-value=76 Score=26.04 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=31.6
Q ss_pred ccccCCCCCcCCCCCCCCceEEeEEEEeCCCcEEEEeCCC--CCCCCCCCC-ccCCCeEEEEECCCCcEEE
Q psy11542 115 LLEPFPNWSTHNEKDCDGLISVYRVQIDECGKLWVLDTGK--LNTFTGSPK-KLCNPQIVVYDLTKGDKIV 182 (187)
Q Consensus 115 ~l~PYP~~~wn~~~~~~~lvsV~~v~iD~~grLWVLDtG~--~~~~~~~~~-~~~~PKLv~~DL~Td~lir 182 (187)
.++=||+|+|. +|.=...|.-+..||==-|. +-. +|-|. .--.-=|..|.|..+++.+
T Consensus 74 slkcFPDWeW~---------nv~ifeT~DP~~fwVEcdG~G~i~f-pGypeg~y~NHfiHsFel~nGkI~~ 134 (162)
T PF03284_consen 74 SLKCFPDWEWY---------NVRIFETQDPNHFWVECDGRGKILF-PGYPEGYYENHFIHSFELENGKIKR 134 (162)
T ss_dssp HHHHSTT-EEE---------EEEEEEBSSTTEEEEEEEEEEEE---TTS--EEEEEEEEEEEEEETTEEEE
T ss_pred HHHHCCCcEEE---------EEEeecccCCCEEEEEecCccceec-CCCCcccceeeeEEEEEeeCCEEEe
Confidence 46679999996 44444556666777754443 222 22111 1112347888888888765
No 45
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=20.95 E-value=2e+02 Score=17.50 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.2
Q ss_pred CCCceEEeEEEEeCCCcEEEE
Q psy11542 130 CDGLISVYRVQIDECGKLWVL 150 (187)
Q Consensus 130 ~~~lvsV~~v~iD~~grLWVL 150 (187)
...-....+|.+|..|.++|.
T Consensus 9 ~~~~~~~~~IavD~~GNiYv~ 29 (38)
T PF06739_consen 9 PGAQDYGNGIAVDSNGNIYVT 29 (38)
T ss_pred CCCceeEEEEEECCCCCEEEE
Confidence 344568999999999999986
No 46
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=20.83 E-value=65 Score=24.38 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=11.8
Q ss_pred cCCCeEEEEECCCC
Q psy11542 165 LCNPQIVVYDLTKG 178 (187)
Q Consensus 165 ~~~PKLv~~DL~Td 178 (187)
.-.|++++||++.+
T Consensus 55 TYtPRlL~~Dlkg~ 68 (115)
T PF10644_consen 55 TYTPRLLLFDLKGG 68 (115)
T ss_pred eECCcEEEEecCCC
Confidence 35799999999975
No 47
>TIGR02334 prpF probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126.
Probab=20.42 E-value=2.8e+02 Score=25.93 Aligned_cols=85 Identities=15% Similarity=0.405 Sum_probs=53.1
Q ss_pred CCCCCCCCCcEEEEccCCCCC--CCceEEEEeCCCCCCCCcccccCCCCCcCCCCCCCCceEEeEEEEeCCCcEEEEeCC
Q psy11542 76 YAGGPNKEKRIFVTTPKFQPG--IPVTLSTLSSKRANDGSHLLEPFPNWSTHNEKDCDGLISVYRVQIDECGKLWVLDTG 153 (187)
Q Consensus 76 ~~~~~~~~gRlFvt~PR~~~g--vP~TLa~v~~~~~~~~~p~l~PYP~~~wn~~~~~~~lvsV~~v~iD~~grLWVLDtG 153 (187)
-.||..-..++.+--|.-+++ +-+|.+.|.-+. +.=+|. +||-.+.|..+. +.+|.|
T Consensus 58 ~GGg~s~TSKvaIV~~s~~p~aDVDY~F~QV~v~~---------~~VD~~----~NCGNm~saVgp--------fAie~G 116 (390)
T TIGR02334 58 MGGATSSTSKCVILSKSSRPGHDVDYLFGQVSIDK---------PFVDWS----GNCGNLSAAVGA--------FAIHAG 116 (390)
T ss_pred ccCCccccceEEEEeCCCCCCCcceEEEEEEeeCC---------CeeecC----CCccchhhhhhH--------HHHhcC
Confidence 334444446777766665654 668888887553 232332 568777776654 458888
Q ss_pred CCCCCCCCCCccCCCeEEEEECCCCcEEEE
Q psy11542 154 KLNTFTGSPKKLCNPQIVVYDLTKGDKIVP 183 (187)
Q Consensus 154 ~~~~~~~~~~~~~~PKLv~~DL~Td~lir~ 183 (187)
.+.. ....+.+..++-+|+.+|+++|..
T Consensus 117 LV~~--~~~~~~~~t~VRI~ntNT~kii~a 144 (390)
T TIGR02334 117 LVDP--ARIPEDGICTVRIWQANIGKTIIA 144 (390)
T ss_pred CcCC--cccCCCCeEEEEEEEcCCCcEEEE
Confidence 8762 100123345799999999998864
Done!