RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11542
(187 letters)
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 69.3 bits (170), Expect = 2e-14
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 134 ISVYRVQIDECGKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKI 181
+SVYR+ +DEC +LWVLD+G +N PK++C P+++V+DL +
Sbjct: 1 VSVYRIAVDECDRLWVLDSGIVN-TLQPPKQICPPKLLVFDLATDKLL 47
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase [Energy metabolism,
TCA cycle].
Length = 745
Score = 29.1 bits (65), Expect = 1.7
Identities = 31/127 (24%), Positives = 42/127 (33%), Gaps = 24/127 (18%)
Query: 71 GPNNGYAGGPNKEKRIFVTTPKFQPGIPVTLSTLSSKRANDGSHLLEPFPNWSTHNEKDC 130
P G+ G + P + V +S S + LLEPF W N KD
Sbjct: 499 LPEKGFEAGRDT---FQAPPGSPNPNVEVAVSPSSDRLQ-----LLEPFEPW---NGKDL 547
Query: 131 DGLISVYRVQ-------IDECGKLWVLDTGKL-----NTFTGSPKKLCNPQIVVYDLTKG 178
GL + +V I G W+ G L NT G+ YDL
Sbjct: 548 SGLRVLIKVTGKCTTDHISAAGP-WLKYKGHLDNISNNTLIGAVNAETGEVNKAYDLDGS 606
Query: 179 DKIVPKT 185
+P+
Sbjct: 607 KGTIPEL 613
>gnl|CDD|170841 PRK10943, PRK10943, cold shock-like protein CspC; Provisional.
Length = 69
Score = 27.0 bits (59), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 19 IQGGGMKTLYEWSGVDFTWPSSRIRDNAIRDGKYDPSKVAILDV 62
IQG G KTL E V+F I+DG+ P+ V + +
Sbjct: 36 IQGNGFKTLAEGQNVEF----------EIQDGQKGPAAVNVTAI 69
>gnl|CDD|218803 pfam05904, DUF863, Plant protein of unknown function (DUF863).
This family consists of a number of hypothetical
proteins from Arabidopsis thaliana and Oryza sativa. The
function of this family is unknown.
Length = 766
Score = 28.1 bits (62), Expect = 3.0
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 73 NNGYAGGPNKE-KRIFVTTPKFQPGIPVTLSTLSSKRANDGSHLLEPFPNWSTHNEKDCD 131
+ G NK ++ KF P + S+LS + +N + L EP P W +
Sbjct: 66 DEHEDLGSNKFYDQVKSRDEKFLPRNDASGSSLSLRNSNGLADLNEPSPTWGLTETANVQ 125
Query: 132 G 132
G
Sbjct: 126 G 126
>gnl|CDD|182040 PRK09707, PRK09707, putative lipoprotein; Provisional.
Length = 1343
Score = 27.8 bits (61), Expect = 4.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 149 VLDTGKLNTFTGSPKKLCNPQIVVYDLTKGD 179
VL TG+LN TG K + QI + D +KGD
Sbjct: 560 VLGTGELNITTGGIVKARDTQIALNDKSKGD 590
>gnl|CDD|173170 PRK14707, PRK14707, hypothetical protein; Provisional.
Length = 2710
Score = 27.8 bits (61), Expect = 4.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 38 PSSRIRDNAIRDGKYDPSKVAIL 60
P SR+ A++DG++DP + +L
Sbjct: 2206 PYSRVTARAMQDGRFDPEQTKLL 2228
>gnl|CDD|225079 COG2168, DsrH, Uncharacterized conserved protein involved in
oxidation of intracellular sulfur [Inorganic ion
transport and metabolism].
Length = 96
Score = 26.2 bits (58), Expect = 4.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 155 LNTFTGSPKKLCNPQIVVYDLTKGDKIV 182
L+T + SP L + +++ LT+GD ++
Sbjct: 2 LHTLSKSPYPLTDLDLLLRLLTEGDAVL 29
>gnl|CDD|222326 pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1.
Transposase proteins are necessary for efficient DNA
transposition. This domain is a member of the DDE
superfamily, which contain three carboxylate residues
that are believed to be responsible for coordinating
metal ions needed for catalysis.
Length = 443
Score = 27.0 bits (60), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 54 PSKVAILDVDVFDPTTYGPN-----NGYAGG 79
+V +LD+DV D T+G NGY G
Sbjct: 138 APRVIVLDMDVTDDRTHGHQELAFFNGYYGH 168
>gnl|CDD|220476 pfam09931, DUF2163, Uncharacterized conserved protein (DUF2163).
This domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 163
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 39 SSRIRDNAIRDGKYDPSKVAILDVDVFDP 67
S+ I + + G+YD ++V I V+ DP
Sbjct: 79 SAAITEADLLAGRYDGARVEIWLVNWADP 107
>gnl|CDD|218787 pfam05871, ESCRT-II, ESCRT-II complex subunit. This family of
conserved eukaryotic proteins are subunits of the
endosome associated complex ESCRT-II which recruits
transport machinery for protein sorting at the
multivesicular body (MVB). This protein complex
transiently associates with the endosomal membrane and
thereby initiates the formation of ESCRT-III, a
membrane-associated protein complex that functions
immediately downstream of ESCRT-II during sorting of MVB
cargo. ESCRT-II in turn functions downstream of ESCRT-I,
a protein complex that binds to ubiquitinated endosomal
cargo.
Length = 139
Score = 26.1 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 16/48 (33%)
Query: 136 VYRVQIDECGKL---WVLDTGKLNT-FTGSPKKLCNPQIVVYDLTKGD 179
+Y +E L WV DTG+LN+ T +Y+LT+GD
Sbjct: 91 IYWRTPEEWADLIYQWVEDTGQLNSVLT------------LYELTEGD 126
>gnl|CDD|234020 TIGR02801, tolR, TolR protein. The model describes the inner
membrane protein TolR, part of the TolR/TolQ complex
that transduces energy from the proton-motive force,
through TolA, to an outer membrane complex made up of
TolB and Pal (peptidoglycan-associated lipoprotein). The
complex is required to maintain outer membrane
integrity, and defects may cause a defect in the import
of some organic compounds in addition to the resulting
morphologic. While several gene pairs homologous to talR
and tolQ may be found in a single genome, but the scope
of this model is set to favor finding only bone fide
TolR, supported by operon structure as well as by score
[Transport and binding proteins, Other, Cellular
processes, Pathogenesis].
Length = 129
Score = 25.6 bits (57), Expect = 9.5
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 86 IF-VTTPKFQPGIPVTLSTLSSK 107
IF VT P G+ V L S+K
Sbjct: 20 IFMVTAPLLTQGVKVDLPKSSAK 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.139 0.440
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,620,979
Number of extensions: 871748
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 17
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)