RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11542
         (187 letters)



>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
           serotonin, salivary gland, binding, ligand binging
           protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
           PDB: 3q6p_A* 3q6t_A*
          Length = 381

 Score =  107 bits (267), Expect = 4e-28
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 35/160 (21%)

Query: 25  KTLYEWSGVDFTWPSSRIRDNAIRDGKYDPSKVAILDVDVFDPTTYGPNNGYAGGPNKEK 84
              Y+W  + +   +          G Y+P  +                        + +
Sbjct: 3   TQGYKWKQLLYNNVTP---------GSYNPDNMISTAFAYDA---------------EGE 38

Query: 85  RIFVTTPKFQPGIPVTLSTLSSKR----ANDGSHLLEPFPNWSTHNEKDCDGLISVYRVQ 140
           ++F+  P+  P +P TL+ + +K         S LL  F        K    L S+Y+  
Sbjct: 39  KLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGH-----KTGKELTSIYQPV 93

Query: 141 IDECGKLWVLDTGKLNTFTGSPKK--LCNPQIVVYDLTKG 178
           ID+C +LWV+D G +   +   K      P IV YDL + 
Sbjct: 94  IDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQP 133


>2qe8_A Uncharacterized protein; structural genomics, joint center for
           structural genomics, J protein structure initiative,
           PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
           29413}
          Length = 343

 Score = 73.3 bits (179), Expect = 6e-16
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 19/97 (19%)

Query: 85  RIFVTTPKFQPGIPVTLSTLSSKRANDGSHLLEPFPNWSTHNEKDCDGLISVYRVQIDEC 144
           R+F++  +F     + ++ L+          L PFP  S +         +V  ++ D  
Sbjct: 29  RLFLSLHQFY-QPEMQVAELTQDG-------LIPFPPQSGN---AIITFDTVLGIKSDGN 77

Query: 145 GKLWVLDTGKLNTFTGSPKKLCNPQIVVYDLTKGDKI 181
           G +W+LD G  +           P++V +D       
Sbjct: 78  GIVWMLDNGNQSK--------SVPKLVAWDTLNNQLS 106


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.019
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 23/117 (19%)

Query: 41  RIRDNAIR-----DGKYDPSKVAI-LDVDVFDPTTYGPNNGYAGGPNKEKRIFVTTPKFQ 94
            IRD             D     I   ++V +P  Y             +++F     F 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-------------RKMFDRLSVFP 382

Query: 95  PGIPVTLSTLS----SKRANDGSHLLEPFPNWSTHNEKDCDGLISVYRVQIDECGKL 147
           P   +    LS        +D   ++     +S   ++  +  IS+  + ++   KL
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439



 Score = 30.6 bits (68), Expect = 0.29
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 43/124 (34%)

Query: 14  HLIAIIQGG---GMKTLYEWSGVDFTWPSSRIRDNAIRDGKYDPSKVAILDVDVFDPTTY 70
           HL  I         + ++    +DF +   +IR     D     +  +IL+  +     Y
Sbjct: 480 HLKNIEHPERMTLFRMVF----LDFRFLEQKIR----HDSTAWNASGSILN-TLQQLKFY 530

Query: 71  GPNNGYAGGPNKEKRIFVTTPKFQPGIPVTLSTLSSKRANDGSHLLEPF-PNWSTH--NE 127
                       +  I    PK+             +  N     +  F P    +    
Sbjct: 531 ------------KPYICDNDPKY------------ERLVNA----ILDFLPKIEENLICS 562

Query: 128 KDCD 131
           K  D
Sbjct: 563 KYTD 566


>2kcm_A Cold shock domain family protein; nucleic acid binding protein,
          beta barrel, structural genomi 2, protein structure
          initiative; NMR {Shewanella oneidensis}
          Length = 74

 Score = 26.1 bits (58), Expect = 2.0
 Identities = 5/22 (22%), Positives = 8/22 (36%)

Query: 14 HLIAIIQGGGMKTLYEWSGVDF 35
          H   ++       L + S V F
Sbjct: 28 HFSELLDKKDEGKLVKGSMVHF 49


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,000,081
Number of extensions: 174447
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 8
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)