Query psy11545
Match_columns 337
No_of_seqs 468 out of 1517
Neff 11.5
Searched_HMMs 46136
Date Fri Aug 16 21:13:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 100.0 5.6E-38 1.2E-42 266.6 29.8 295 6-309 176-472 (485)
2 KOG0254|consensus 100.0 2.2E-29 4.7E-34 223.9 31.4 304 3-311 193-503 (513)
3 TIGR00887 2A0109 phosphate:H+ 100.0 1.9E-28 4E-33 217.9 24.8 273 12-304 202-501 (502)
4 KOG0253|consensus 100.0 5.1E-28 1.1E-32 193.3 19.4 273 7-299 223-527 (528)
5 PF00083 Sugar_tr: Sugar (and 100.0 1.5E-33 3.4E-38 247.9 -14.7 282 12-306 169-451 (451)
6 TIGR01299 synapt_SV2 synaptic 100.0 8.1E-27 1.7E-31 211.0 24.4 267 12-298 332-740 (742)
7 PRK10077 xylE D-xylose transpo 100.0 8.8E-26 1.9E-30 200.3 29.3 279 11-310 191-476 (479)
8 TIGR00879 SP MFS transporter, 99.9 2.4E-24 5.1E-29 191.3 29.1 286 10-300 192-479 (481)
9 TIGR00898 2A0119 cation transp 99.9 1.6E-24 3.4E-29 193.5 20.7 262 12-300 241-503 (505)
10 KOG0252|consensus 99.9 2.3E-23 5E-28 171.6 8.6 273 12-305 223-511 (538)
11 PRK10642 proline/glycine betai 99.9 9.8E-21 2.1E-25 168.0 22.0 245 11-298 189-436 (490)
12 KOG0255|consensus 99.9 5.7E-20 1.2E-24 164.6 24.6 272 12-305 232-506 (521)
13 COG2271 UhpC Sugar phosphate p 99.8 2.3E-19 4.9E-24 147.4 15.2 245 11-291 182-434 (448)
14 PRK09952 shikimate transporter 99.8 3E-18 6.4E-23 150.0 21.3 236 11-295 196-436 (438)
15 PRK10489 enterobactin exporter 99.8 2.1E-18 4.6E-23 150.3 18.5 168 120-303 242-411 (417)
16 COG2814 AraJ Arabinose efflux 99.8 7.2E-18 1.6E-22 140.1 19.9 227 3-289 156-384 (394)
17 PRK11663 regulatory protein Uh 99.8 1.2E-18 2.7E-23 152.4 14.4 164 118-295 260-428 (434)
18 TIGR00903 2A0129 major facilit 99.8 7.8E-18 1.7E-22 143.4 17.9 219 9-288 139-362 (368)
19 PRK03893 putative sialic acid 99.8 9.8E-17 2.1E-21 143.2 24.4 148 119-280 293-442 (496)
20 PRK11273 glpT sn-glycerol-3-ph 99.8 3.2E-17 7E-22 144.2 20.5 158 118-289 270-433 (452)
21 PRK10406 alpha-ketoglutarate t 99.8 5.2E-17 1.1E-21 142.1 20.8 223 11-288 195-421 (432)
22 PRK11551 putative 3-hydroxyphe 99.8 3.6E-17 7.9E-22 142.2 18.8 153 118-286 237-391 (406)
23 TIGR00891 2A0112 putative sial 99.8 1.1E-16 2.5E-21 139.0 21.7 139 120-273 257-398 (405)
24 TIGR00712 glpT glycerol-3-phos 99.8 2.5E-17 5.5E-22 144.3 16.8 167 118-295 268-437 (438)
25 PRK12307 putative sialic acid 99.8 1.6E-16 3.5E-21 139.0 21.1 137 120-271 250-388 (426)
26 TIGR02332 HpaX 4-hydroxyphenyl 99.7 6.8E-17 1.5E-21 140.3 17.3 147 117-279 258-409 (412)
27 TIGR00893 2A0114 d-galactonate 99.7 8.2E-17 1.8E-21 139.4 17.6 246 11-287 145-395 (399)
28 PRK09556 uhpT sugar phosphate 99.7 1.1E-16 2.5E-21 141.3 18.4 158 117-288 274-446 (467)
29 TIGR00890 2A0111 Oxalate/Forma 99.7 1.9E-16 4.2E-21 136.2 19.4 149 122-284 226-375 (377)
30 PRK15075 citrate-proton sympor 99.7 1.9E-16 4.1E-21 138.7 19.1 142 117-270 254-398 (434)
31 PRK09528 lacY galactoside perm 99.7 1.4E-16 3E-21 139.0 18.0 140 138-293 265-405 (420)
32 PRK03545 putative arabinose tr 99.7 4.5E-16 9.8E-21 134.5 20.9 220 9-291 158-380 (390)
33 TIGR02332 HpaX 4-hydroxyphenyl 99.7 1.8E-16 4E-21 137.6 17.9 180 101-296 8-194 (412)
34 TIGR00899 2A0120 sugar efflux 99.7 4E-16 8.6E-21 134.3 19.4 149 122-287 220-370 (375)
35 COG2271 UhpC Sugar phosphate p 99.7 8.8E-17 1.9E-21 132.3 13.0 181 99-295 27-210 (448)
36 TIGR00889 2A0110 nucleoside tr 99.7 4.1E-16 8.8E-21 135.5 17.9 189 90-296 202-407 (418)
37 PRK11010 ampG muropeptide tran 99.7 1.4E-15 3E-20 134.7 20.4 233 10-294 170-405 (491)
38 TIGR00883 2A0106 metabolite-pr 99.7 7.6E-16 1.7E-20 133.3 18.2 218 11-278 167-388 (394)
39 TIGR00895 2A0115 benzoate tran 99.7 4.2E-16 9.1E-21 135.1 16.6 228 11-263 168-397 (398)
40 PRK15011 sugar efflux transpor 99.7 1E-15 2.2E-20 132.3 18.3 156 120-293 235-392 (393)
41 PRK11663 regulatory protein Uh 99.7 3.7E-16 8.1E-21 136.8 15.5 162 117-294 39-201 (434)
42 TIGR00895 2A0115 benzoate tran 99.7 9.2E-16 2E-20 133.0 17.5 163 117-295 33-196 (398)
43 COG2814 AraJ Arabinose efflux 99.7 9.4E-16 2E-20 127.6 16.2 160 117-292 29-189 (394)
44 PRK09705 cynX putative cyanate 99.7 1.9E-15 4.2E-20 130.5 17.9 165 117-298 221-388 (393)
45 PRK05122 major facilitator sup 99.7 3.1E-15 6.6E-20 129.8 18.9 156 121-294 236-391 (399)
46 PRK09874 drug efflux system pr 99.7 1.8E-15 3.9E-20 131.7 17.6 136 139-290 262-397 (408)
47 TIGR01299 synapt_SV2 synaptic 99.7 2.2E-15 4.8E-20 137.3 18.3 160 118-294 184-357 (742)
48 PRK03545 putative arabinose tr 99.7 1.6E-15 3.4E-20 131.2 16.7 159 120-294 28-187 (390)
49 TIGR00892 2A0113 monocarboxyla 99.7 3.1E-16 6.8E-21 137.8 11.3 153 117-285 257-415 (455)
50 KOG2533|consensus 99.7 3.2E-16 6.9E-21 136.0 11.0 225 12-275 204-440 (495)
51 TIGR00893 2A0114 d-galactonate 99.7 1.3E-15 2.8E-20 131.9 15.0 163 118-296 11-174 (399)
52 PLN00028 nitrate transmembrane 99.7 1.3E-15 2.8E-20 134.7 15.1 152 120-289 271-431 (476)
53 PRK10213 nepI ribonucleoside t 99.7 2.7E-15 5.8E-20 129.6 16.4 158 121-294 40-198 (394)
54 TIGR00881 2A0104 phosphoglycer 99.7 1.3E-15 2.9E-20 131.1 14.1 231 10-273 146-379 (379)
55 TIGR00902 2A0127 phenyl propri 99.7 8E-15 1.7E-19 126.3 18.6 175 89-286 198-374 (382)
56 TIGR00710 efflux_Bcr_CflA drug 99.7 2.7E-15 5.9E-20 129.5 15.8 164 117-296 21-185 (385)
57 PRK12382 putative transporter; 99.7 1E-14 2.2E-19 126.3 18.9 154 120-290 235-388 (392)
58 TIGR02718 sider_RhtX_FptX side 99.7 1.5E-14 3.2E-19 125.1 19.6 224 10-286 159-386 (390)
59 TIGR00711 efflux_EmrB drug res 99.7 1.1E-15 2.4E-20 136.1 12.4 163 117-295 18-181 (485)
60 PRK15403 multidrug efflux syst 99.6 7.3E-15 1.6E-19 127.6 16.8 164 117-296 32-196 (413)
61 KOG2532|consensus 99.6 1.3E-15 2.8E-20 131.9 11.9 240 11-290 192-446 (466)
62 PRK14995 methyl viologen resis 99.6 3.6E-15 7.9E-20 132.6 15.1 176 104-295 9-186 (495)
63 PRK10473 multidrug efflux syst 99.6 3.5E-15 7.7E-20 129.1 14.7 178 103-296 5-183 (392)
64 TIGR00881 2A0104 phosphoglycer 99.6 1.7E-15 3.8E-20 130.3 12.3 163 117-295 11-175 (379)
65 TIGR00792 gph sugar (Glycoside 99.6 1.5E-14 3.3E-19 127.0 18.4 206 11-270 170-384 (437)
66 PRK10054 putative transporter; 99.6 8.8E-15 1.9E-19 126.4 16.1 162 117-295 23-186 (395)
67 PRK11551 putative 3-hydroxyphe 99.6 3.7E-15 8E-20 129.6 13.5 163 117-295 31-194 (406)
68 TIGR00882 2A0105 oligosacchari 99.6 2.1E-14 4.6E-19 124.4 18.0 226 12-288 160-392 (396)
69 TIGR00891 2A0112 putative sial 99.6 9.2E-15 2E-19 127.1 15.7 171 108-295 19-192 (405)
70 TIGR00894 2A0114euk Na(+)-depe 99.6 3.7E-15 8.1E-20 131.9 13.2 241 11-288 195-447 (465)
71 PRK03699 putative transporter; 99.6 8.1E-15 1.7E-19 126.9 14.2 153 117-286 221-375 (394)
72 PRK15402 multidrug efflux syst 99.6 2.3E-14 5E-19 124.6 17.0 164 117-296 29-193 (406)
73 PRK10091 MFS transport protein 99.6 1.3E-14 2.8E-19 125.0 15.1 162 118-295 20-182 (382)
74 PLN00028 nitrate transmembrane 99.6 1.8E-14 3.9E-19 127.4 16.3 158 117-291 52-219 (476)
75 TIGR00897 2A0118 polyol permea 99.6 8.9E-14 1.9E-18 120.7 20.2 159 117-288 238-398 (402)
76 TIGR00903 2A0129 major facilit 99.6 1.2E-14 2.5E-19 123.9 14.3 161 118-295 8-169 (368)
77 PRK11902 ampG muropeptide tran 99.6 7.5E-14 1.6E-18 121.1 19.5 224 11-287 158-386 (402)
78 cd06174 MFS The Major Facilita 99.6 6.8E-14 1.5E-18 119.1 18.7 155 117-287 191-348 (352)
79 PRK11128 putative 3-phenylprop 99.6 6.7E-14 1.5E-18 120.6 18.8 175 88-285 197-373 (382)
80 TIGR00900 2A0121 H+ Antiporter 99.6 6E-14 1.3E-18 120.2 18.3 132 122-268 232-365 (365)
81 PRK10504 putative transporter; 99.6 2.1E-14 4.6E-19 127.3 15.9 162 117-294 26-188 (471)
82 PRK15402 multidrug efflux syst 99.6 6.2E-14 1.3E-18 121.9 18.4 220 11-282 164-386 (406)
83 PRK11273 glpT sn-glycerol-3-ph 99.6 2.3E-14 5.1E-19 126.2 15.9 163 120-295 48-212 (452)
84 PRK10091 MFS transport protein 99.6 1.2E-13 2.5E-18 119.1 19.9 148 125-288 224-373 (382)
85 PRK11652 emrD multidrug resist 99.6 3.8E-14 8.1E-19 122.8 16.5 162 119-296 26-188 (394)
86 PRK12307 putative sialic acid 99.6 2.3E-14 5E-19 125.5 15.0 146 117-278 34-180 (426)
87 TIGR00712 glpT glycerol-3-phos 99.6 1.9E-14 4.1E-19 126.2 14.3 164 118-295 44-210 (438)
88 TIGR00894 2A0114euk Na(+)-depe 99.6 3.1E-14 6.7E-19 126.0 15.3 151 130-294 70-222 (465)
89 PF07690 MFS_1: Major Facilita 99.6 1.5E-14 3.2E-19 123.4 12.7 160 120-295 15-176 (352)
90 KOG1330|consensus 99.6 7.1E-16 1.5E-20 128.3 4.4 168 117-300 49-218 (493)
91 PRK10213 nepI ribonucleoside t 99.6 2.5E-13 5.3E-18 117.4 20.3 145 124-285 240-385 (394)
92 PRK09874 drug efflux system pr 99.6 7.2E-14 1.6E-18 121.7 17.0 161 117-294 30-196 (408)
93 PRK10504 putative transporter; 99.6 1.6E-13 3.5E-18 121.7 18.8 162 91-270 256-419 (471)
94 TIGR00892 2A0113 monocarboxyla 99.6 6.3E-14 1.4E-18 123.3 15.7 158 118-292 36-195 (455)
95 TIGR00710 efflux_Bcr_CflA drug 99.6 3.3E-13 7.1E-18 116.6 19.9 202 10-265 155-360 (385)
96 PRK10473 multidrug efflux syst 99.6 1.7E-13 3.8E-18 118.6 18.0 138 122-280 224-363 (392)
97 PRK11043 putative transporter; 99.6 3.7E-13 8E-18 116.9 19.9 201 10-266 156-357 (401)
98 PRK15034 nitrate/nitrite trans 99.6 4.1E-13 8.9E-18 115.8 19.7 224 10-291 207-454 (462)
99 PRK11102 bicyclomycin/multidru 99.6 3.6E-14 7.9E-19 122.2 13.4 160 120-295 10-170 (377)
100 TIGR00900 2A0121 H+ Antiporter 99.6 8.1E-14 1.7E-18 119.4 14.9 158 119-287 17-175 (365)
101 PRK09556 uhpT sugar phosphate 99.6 6.1E-14 1.3E-18 124.1 14.2 178 105-293 33-214 (467)
102 TIGR00887 2A0109 phosphate:H+ 99.6 2.2E-13 4.7E-18 121.6 17.7 147 138-295 59-228 (502)
103 PRK03699 putative transporter; 99.6 2.7E-13 5.9E-18 117.3 17.6 154 117-286 23-178 (394)
104 TIGR00886 2A0108 nitrite extru 99.6 2E-13 4.3E-18 117.1 16.5 162 117-294 17-191 (366)
105 PRK10077 xylE D-xylose transpo 99.6 3.1E-13 6.8E-18 120.2 18.1 159 132-295 51-218 (479)
106 PRK15462 dipeptide/tripeptide 99.6 2.3E-13 5E-18 118.6 16.4 155 117-286 25-184 (493)
107 PRK03893 putative sialic acid 99.5 1.5E-13 3.3E-18 122.8 15.0 146 117-278 36-182 (496)
108 PRK11646 multidrug resistance 99.5 2E-13 4.2E-18 118.3 15.2 157 121-294 30-188 (400)
109 TIGR00711 efflux_EmrB drug res 99.5 9.9E-14 2.1E-18 123.6 13.7 159 91-266 250-410 (485)
110 PRK11043 putative transporter; 99.5 3.5E-13 7.6E-18 117.1 16.7 155 119-289 24-179 (401)
111 PRK10489 enterobactin exporter 99.5 2.4E-13 5.1E-18 118.7 15.6 164 118-294 34-199 (417)
112 PRK14995 methyl viologen resis 99.5 4.5E-13 9.7E-18 119.3 16.5 136 118-266 276-413 (495)
113 COG2223 NarK Nitrate/nitrite t 99.5 4.6E-13 1E-17 110.7 14.9 235 4-290 159-400 (417)
114 PRK10207 dipeptide/tripeptide 99.5 5.9E-13 1.3E-17 117.6 16.6 164 102-281 16-184 (489)
115 PRK10054 putative transporter; 99.5 5.2E-13 1.1E-17 115.5 15.7 135 138-288 247-381 (395)
116 TIGR00890 2A0111 Oxalate/Forma 99.5 1.3E-13 2.8E-18 118.6 11.8 159 118-293 20-179 (377)
117 TIGR00879 SP MFS transporter, 99.5 1.7E-13 3.7E-18 121.7 12.5 144 138-295 74-220 (481)
118 PRK11102 bicyclomycin/multidru 99.5 2.2E-12 4.8E-17 111.1 19.0 127 120-259 213-342 (377)
119 PRK15034 nitrate/nitrite trans 99.5 7.7E-13 1.7E-17 114.2 15.8 182 101-294 34-235 (462)
120 PRK10642 proline/glycine betai 99.5 8.5E-13 1.8E-17 117.4 16.5 167 117-295 32-216 (490)
121 PRK09705 cynX putative cyanate 99.5 1.2E-12 2.7E-17 113.1 16.8 149 118-283 26-176 (393)
122 TIGR00924 yjdL_sub1_fam amino 99.5 8.1E-13 1.7E-17 116.7 15.9 153 117-285 26-186 (475)
123 TIGR00880 2_A_01_02 Multidrug 99.5 4.9E-13 1.1E-17 98.0 11.9 136 143-294 6-141 (141)
124 PRK03633 putative MFS family t 99.5 4.8E-12 1E-16 109.1 19.7 148 120-286 219-367 (381)
125 PRK05122 major facilitator sup 99.5 1.3E-12 2.7E-17 113.5 16.1 160 117-284 31-192 (399)
126 TIGR00897 2A0118 polyol permea 99.5 9.6E-13 2.1E-17 114.2 15.3 163 119-293 31-195 (402)
127 PRK10429 melibiose:sodium symp 99.5 2.4E-12 5.3E-17 113.9 17.8 121 138-269 269-396 (473)
128 KOG2615|consensus 99.5 1.8E-13 3.9E-18 111.2 9.6 143 138-297 71-219 (451)
129 cd06174 MFS The Major Facilita 99.5 1.1E-12 2.3E-17 111.8 15.0 154 117-286 15-169 (352)
130 PRK10406 alpha-ketoglutarate t 99.5 1.6E-12 3.5E-17 113.9 16.5 169 117-294 38-221 (432)
131 PRK12382 putative transporter; 99.5 1.3E-12 2.9E-17 113.0 15.8 154 118-279 32-187 (392)
132 PRK11646 multidrug resistance 99.5 3.6E-12 7.7E-17 110.5 18.1 150 121-286 228-383 (400)
133 PRK11195 lysophospholipid tran 99.5 1.9E-12 4.2E-17 111.8 15.3 153 122-295 24-177 (393)
134 PF11700 ATG22: Vacuole efflux 99.5 8.2E-12 1.8E-16 109.2 19.1 172 117-297 297-473 (477)
135 PF03825 Nuc_H_symport: Nucleo 99.5 1.3E-11 2.7E-16 105.9 19.8 187 88-294 199-398 (400)
136 COG2211 MelB Na+/melibiose sym 99.5 1.1E-11 2.3E-16 105.8 19.0 167 87-270 227-400 (467)
137 TIGR00898 2A0119 cation transp 99.5 7.6E-13 1.6E-17 118.5 12.7 154 122-295 110-267 (505)
138 TIGR00899 2A0120 sugar efflux 99.5 1.8E-12 4E-17 111.5 14.6 159 121-295 17-180 (375)
139 TIGR00806 rfc RFC reduced fola 99.4 8.4E-12 1.8E-16 106.3 17.2 160 117-294 42-205 (511)
140 TIGR00901 2A0125 AmpG-related 99.4 4E-12 8.6E-17 108.6 15.6 129 117-250 225-355 (356)
141 PF05977 MFS_3: Transmembrane 99.4 1.4E-11 3.1E-16 108.9 19.2 151 121-287 238-390 (524)
142 PRK09952 shikimate transporter 99.4 5.4E-12 1.2E-16 110.7 16.4 139 144-294 73-222 (438)
143 PRK15075 citrate-proton sympor 99.4 4.8E-12 1E-16 111.0 16.1 161 103-278 17-199 (434)
144 PF01306 LacY_symp: LacY proto 99.4 1.6E-12 3.6E-17 109.6 12.3 188 87-295 211-404 (412)
145 PRK09669 putative symporter Ya 99.4 1.7E-11 3.8E-16 107.8 19.3 166 87-270 220-392 (444)
146 TIGR00885 fucP L-fucose:H+ sym 99.4 6.4E-12 1.4E-16 109.0 16.1 156 118-286 20-202 (410)
147 PRK08633 2-acyl-glycerophospho 99.4 5E-12 1.1E-16 124.2 17.2 149 121-285 252-404 (1146)
148 PRK11195 lysophospholipid tran 99.4 2.6E-11 5.5E-16 104.9 19.7 147 125-289 229-378 (393)
149 PRK06814 acylglycerophosphoeth 99.4 4.9E-12 1.1E-16 123.9 17.1 236 10-282 170-413 (1140)
150 TIGR01272 gluP glucose/galacto 99.4 1.4E-11 3E-16 102.6 16.7 141 118-277 157-301 (310)
151 TIGR00896 CynX cyanate transpo 99.4 8.6E-12 1.9E-16 106.5 15.9 135 118-269 214-351 (355)
152 PRK11462 putative transporter; 99.4 2.4E-11 5.2E-16 107.0 19.0 118 138-269 266-390 (460)
153 PF13347 MFS_2: MFS/sugar tran 99.4 2.1E-11 4.7E-16 106.7 18.5 205 12-270 175-388 (428)
154 COG2223 NarK Nitrate/nitrite t 99.4 3.7E-12 8E-17 105.4 12.6 162 117-293 30-195 (417)
155 PRK10133 L-fucose transporter; 99.4 2.2E-11 4.7E-16 106.6 18.2 141 123-282 280-424 (438)
156 PRK09584 tppB putative tripept 99.4 1.6E-11 3.4E-16 109.2 16.9 153 117-284 37-194 (500)
157 PF07690 MFS_1: Major Facilita 99.4 1.4E-12 3E-17 111.2 9.5 126 119-257 224-352 (352)
158 KOG0255|consensus 99.4 6.1E-12 1.3E-16 113.0 13.7 138 138-295 121-258 (521)
159 TIGR00885 fucP L-fucose:H+ sym 99.4 5.2E-11 1.1E-15 103.4 18.7 137 121-276 252-397 (410)
160 PRK06814 acylglycerophosphoeth 99.4 1.4E-11 3.1E-16 120.7 16.9 144 138-295 55-198 (1140)
161 PF06609 TRI12: Fungal trichot 99.4 1.1E-11 2.5E-16 109.4 14.6 152 121-289 64-215 (599)
162 PRK15403 multidrug efflux syst 99.4 1.2E-10 2.6E-15 101.3 20.6 222 9-283 165-389 (413)
163 PRK03633 putative MFS family t 99.4 2.3E-11 4.9E-16 104.9 15.9 135 117-267 22-157 (381)
164 PTZ00207 hypothetical protein; 99.4 2.2E-11 4.8E-16 108.2 15.8 164 117-293 43-207 (591)
165 PRK11652 emrD multidrug resist 99.4 8.4E-11 1.8E-15 101.9 19.1 132 121-266 227-360 (394)
166 PRK09848 glucuronide transport 99.4 5.3E-11 1.2E-15 104.9 18.0 163 88-269 220-391 (448)
167 TIGR00805 oat sodium-independe 99.4 4E-12 8.6E-17 115.6 10.9 191 104-295 36-284 (633)
168 KOG3764|consensus 99.4 3.8E-12 8.2E-17 104.3 9.3 143 138-296 109-252 (464)
169 TIGR00901 2A0125 AmpG-related 99.4 1.6E-11 3.4E-16 105.0 13.6 162 119-295 6-182 (356)
170 PRK09528 lacY galactoside perm 99.4 3.8E-11 8.3E-16 104.9 16.3 162 119-293 28-193 (420)
171 PRK15011 sugar efflux transpor 99.4 4.1E-11 8.9E-16 103.8 16.2 159 120-295 34-198 (393)
172 KOG2504|consensus 99.4 2.2E-12 4.7E-17 113.4 8.3 181 90-292 292-476 (509)
173 KOG2532|consensus 99.4 1.3E-11 2.8E-16 107.3 12.9 149 131-293 68-218 (466)
174 PRK10133 L-fucose transporter; 99.3 4E-11 8.7E-16 105.0 15.4 135 117-264 42-177 (438)
175 TIGR01301 GPH_sucrose GPH fami 99.3 5.3E-11 1.1E-15 103.6 15.8 192 102-296 6-223 (477)
176 PRK11010 ampG muropeptide tran 99.3 4.6E-11 1E-15 106.1 15.1 163 117-295 28-198 (491)
177 TIGR00896 CynX cyanate transpo 99.3 3.8E-11 8.2E-16 102.6 13.9 148 117-282 16-166 (355)
178 PRK08633 2-acyl-glycerophospho 99.3 6.5E-11 1.4E-15 116.4 17.1 116 138-266 50-165 (1146)
179 TIGR00788 fbt folate/biopterin 99.3 4.6E-11 1E-15 105.3 14.4 133 130-268 282-415 (468)
180 PRK11902 ampG muropeptide tran 99.3 4.4E-11 9.4E-16 103.9 13.8 163 117-295 15-185 (402)
181 PF05977 MFS_3: Transmembrane 99.3 5.5E-11 1.2E-15 105.2 14.4 137 138-285 48-184 (524)
182 COG2270 Permeases of the major 99.3 4.4E-10 9.5E-15 93.5 18.5 163 116-295 267-432 (438)
183 KOG0569|consensus 99.3 4E-11 8.7E-16 103.3 12.9 144 138-295 63-208 (485)
184 TIGR00886 2A0108 nitrite extru 99.3 3.5E-11 7.6E-16 103.2 11.4 121 119-252 243-365 (366)
185 KOG2533|consensus 99.3 1.8E-10 3.8E-15 100.6 15.3 151 130-296 75-232 (495)
186 KOG1330|consensus 99.3 3.7E-11 8E-16 100.6 10.3 213 12-267 186-413 (493)
187 KOG2504|consensus 99.2 1.4E-10 3E-15 102.2 13.6 159 117-293 62-223 (509)
188 COG2807 CynX Cyanate permease 99.2 6.3E-10 1.4E-14 90.6 15.9 217 12-289 163-383 (395)
189 TIGR00882 2A0105 oligosacchari 99.2 1.9E-10 4E-15 99.8 13.8 165 117-293 18-185 (396)
190 TIGR01301 GPH_sucrose GPH fami 99.2 1.3E-09 2.8E-14 95.0 18.5 157 139-296 309-476 (477)
191 TIGR00883 2A0106 metabolite-pr 99.2 2.8E-10 6.2E-15 98.5 13.6 138 146-294 46-193 (394)
192 PF06609 TRI12: Fungal trichot 99.2 9.6E-10 2.1E-14 97.4 16.3 113 138-264 352-465 (599)
193 KOG0254|consensus 99.2 2.4E-10 5.3E-15 102.3 12.5 140 138-295 92-233 (513)
194 PRK11128 putative 3-phenylprop 99.2 1E-09 2.2E-14 94.8 15.7 160 117-294 20-181 (382)
195 TIGR00902 2A0127 phenyl propri 99.2 2E-09 4.3E-14 92.9 16.1 146 117-279 20-167 (382)
196 PF00083 Sugar_tr: Sugar (and 99.1 5E-13 1.1E-17 118.0 -6.9 143 138-294 49-194 (451)
197 TIGR02718 sider_RhtX_FptX side 99.1 2.6E-09 5.7E-14 92.5 14.2 171 111-293 11-186 (390)
198 COG0738 FucP Fucose permease [ 99.1 7.8E-09 1.7E-13 85.6 15.1 173 88-284 228-402 (422)
199 PF06813 Nodulin-like: Nodulin 99.1 7.1E-09 1.5E-13 82.2 13.7 141 114-266 15-157 (250)
200 COG3104 PTR2 Dipeptide/tripept 99.0 2.1E-09 4.6E-14 91.4 10.1 142 133-288 58-203 (498)
201 TIGR00792 gph sugar (Glycoside 99.0 4.3E-09 9.4E-14 92.6 11.8 161 125-295 24-198 (437)
202 KOG4686|consensus 99.0 6.3E-09 1.4E-13 81.9 11.0 134 117-268 280-416 (459)
203 KOG2816|consensus 99.0 1.3E-08 2.9E-13 88.3 14.1 137 144-299 71-207 (463)
204 KOG0252|consensus 99.0 5.4E-09 1.2E-13 87.7 10.3 112 138-259 87-199 (538)
205 COG0738 FucP Fucose permease [ 99.0 6.6E-08 1.4E-12 80.2 16.0 156 118-286 30-205 (422)
206 KOG3762|consensus 98.9 6.3E-09 1.4E-13 89.0 9.6 146 126-287 396-543 (618)
207 KOG2325|consensus 98.9 4.3E-08 9.2E-13 84.4 13.7 147 138-296 74-234 (488)
208 PRK10207 dipeptide/tripeptide 98.9 3E-07 6.6E-12 81.6 19.1 148 136-289 310-474 (489)
209 TIGR00788 fbt folate/biopterin 98.9 7.2E-08 1.6E-12 85.2 15.0 159 119-295 43-212 (468)
210 PTZ00207 hypothetical protein; 98.9 2.2E-07 4.8E-12 83.1 17.4 185 88-295 345-556 (591)
211 KOG0253|consensus 98.8 1.8E-08 4E-13 82.3 8.4 145 132-295 109-254 (528)
212 KOG2563|consensus 98.8 1.5E-07 3.3E-12 79.2 13.8 194 85-295 255-454 (480)
213 KOG3764|consensus 98.8 1.3E-08 2.8E-13 84.0 6.5 229 3-287 211-450 (464)
214 TIGR00924 yjdL_sub1_fam amino 98.8 1.4E-06 3.1E-11 77.2 19.5 148 137-291 314-468 (475)
215 PF05631 DUF791: Protein of un 98.7 1.5E-06 3.3E-11 71.7 17.2 155 126-297 59-222 (354)
216 TIGR00889 2A0110 nucleoside tr 98.7 4E-07 8.7E-12 79.5 14.5 61 124-184 26-88 (418)
217 PRK09584 tppB putative tripept 98.7 1.8E-07 3.9E-12 83.5 12.0 146 137-289 318-477 (500)
218 PRK09669 putative symporter Ya 98.7 1.7E-07 3.7E-12 82.7 10.8 163 121-293 29-206 (444)
219 PRK11462 putative transporter; 98.6 8.8E-07 1.9E-11 78.3 12.9 162 121-293 29-206 (460)
220 PF13347 MFS_2: MFS/sugar tran 98.6 1.7E-07 3.6E-12 82.3 8.0 161 125-293 26-200 (428)
221 PRK10429 melibiose:sodium symp 98.5 9.6E-07 2.1E-11 78.5 11.4 164 120-294 25-204 (473)
222 PF01306 LacY_symp: LacY proto 98.5 1.1E-07 2.4E-12 80.8 4.6 160 117-293 23-190 (412)
223 COG2807 CynX Cyanate permease 98.5 1.1E-05 2.4E-10 66.4 14.9 152 117-286 28-181 (395)
224 KOG3626|consensus 98.4 6.3E-06 1.4E-10 74.5 14.1 153 12-181 320-477 (735)
225 PF03092 BT1: BT1 family; Int 98.4 1.7E-06 3.6E-11 75.7 10.2 126 138-269 258-383 (433)
226 TIGR00926 2A1704 Peptide:H+ sy 98.4 1.5E-05 3.2E-10 72.9 16.0 155 126-288 13-179 (654)
227 PF03825 Nuc_H_symport: Nucleo 98.4 5.7E-06 1.2E-10 71.4 12.0 160 117-295 18-183 (400)
228 KOG2615|consensus 98.3 1.8E-05 3.8E-10 65.6 12.4 122 129-266 290-414 (451)
229 TIGR00805 oat sodium-independe 98.3 7.7E-06 1.7E-10 75.0 10.6 90 87-181 321-415 (633)
230 PRK09848 glucuronide transport 98.2 3.1E-05 6.6E-10 68.5 12.3 55 125-179 32-93 (448)
231 TIGR00806 rfc RFC reduced fola 98.2 2.3E-05 4.9E-10 67.8 10.8 149 88-257 254-406 (511)
232 PF03092 BT1: BT1 family; Int 98.2 3.7E-05 8E-10 67.4 12.3 155 125-293 14-177 (433)
233 KOG2563|consensus 98.1 4.7E-05 1E-09 64.6 11.4 121 137-266 81-202 (480)
234 PF12832 MFS_1_like: MFS_1 lik 98.1 2.7E-05 5.9E-10 49.7 7.0 60 115-174 14-74 (77)
235 PF11700 ATG22: Vacuole efflux 98.1 0.00027 5.9E-09 62.5 15.6 144 139-296 74-252 (477)
236 PF05978 UNC-93: Ion channel r 98.0 0.00019 4.1E-09 52.8 11.9 108 138-262 40-147 (156)
237 PF03209 PUCC: PUCC protein; 98.0 0.0016 3.5E-08 55.1 18.5 123 131-266 239-363 (403)
238 COG2211 MelB Na+/melibiose sym 98.0 7.6E-05 1.6E-09 64.6 10.9 164 120-293 31-209 (467)
239 KOG2816|consensus 98.0 0.00017 3.7E-09 63.2 13.2 120 130-266 271-392 (463)
240 PRK15462 dipeptide/tripeptide 98.0 0.0011 2.3E-08 58.8 18.0 125 132-263 305-437 (493)
241 PF01770 Folate_carrier: Reduc 98.0 8.4E-05 1.8E-09 63.3 10.2 135 103-253 249-389 (412)
242 PF03209 PUCC: PUCC protein; 97.9 0.00025 5.5E-09 59.9 12.5 121 150-271 29-156 (403)
243 PF01770 Folate_carrier: Reduc 97.9 0.0019 4.1E-08 55.2 17.0 129 121-266 24-155 (412)
244 PF06963 FPN1: Ferroportin1 (F 97.8 0.0032 6.9E-08 54.7 17.9 131 121-257 278-409 (432)
245 TIGR00769 AAA ADP/ATP carrier 97.8 0.0018 3.9E-08 56.9 15.8 128 138-265 46-190 (472)
246 PF03137 OATP: Organic Anion T 97.8 4.7E-06 1E-10 74.5 0.0 175 86-266 295-514 (539)
247 COG0477 ProP Permeases of the 97.7 0.0021 4.6E-08 53.2 14.9 145 120-279 21-173 (338)
248 PF03137 OATP: Organic Anion T 97.6 1.2E-05 2.6E-10 72.0 -1.1 176 118-294 20-252 (539)
249 COG3104 PTR2 Dipeptide/tripept 97.5 0.025 5.5E-07 49.3 17.8 167 117-289 304-485 (498)
250 KOG3098|consensus 97.4 0.015 3.3E-07 50.7 16.0 123 138-262 282-410 (461)
251 KOG3626|consensus 97.4 0.0017 3.6E-08 59.4 10.1 180 118-298 114-349 (735)
252 PF07672 MFS_Mycoplasma: Mycop 97.3 0.0099 2.1E-07 47.2 12.3 23 12-34 39-61 (267)
253 PF06779 DUF1228: Protein of u 97.2 0.0029 6.3E-08 40.9 7.2 66 119-184 10-76 (85)
254 PF02487 CLN3: CLN3 protein; 97.2 0.0083 1.8E-07 51.4 12.0 60 204-263 335-394 (402)
255 KOG3810|consensus 97.0 0.028 6.1E-07 46.6 12.8 176 88-287 226-417 (433)
256 TIGR01272 gluP glucose/galacto 97.0 0.0016 3.5E-08 54.5 6.1 88 206-294 13-117 (310)
257 PF06963 FPN1: Ferroportin1 (F 97.0 0.037 8.1E-07 48.2 13.8 150 138-291 41-200 (432)
258 KOG0637|consensus 96.9 0.0013 2.8E-08 56.2 4.2 160 100-261 32-200 (498)
259 COG2270 Permeases of the major 96.8 0.022 4.8E-07 48.6 11.1 144 138-294 61-223 (438)
260 TIGR00939 2a57 Equilibrative N 96.8 0.019 4E-07 50.4 10.9 118 138-260 310-428 (437)
261 PF03219 TLC: TLC ATP/ADP tran 96.8 0.025 5.5E-07 50.1 11.5 119 147-265 71-205 (491)
262 KOG2325|consensus 96.7 0.004 8.6E-08 54.5 5.8 60 226-285 410-469 (488)
263 KOG4686|consensus 96.5 0.00058 1.3E-08 54.6 -0.3 117 138-268 82-200 (459)
264 PF00854 PTR2: POT family; In 96.5 0.015 3.3E-07 50.1 8.2 117 166-289 2-121 (372)
265 PF13000 Acatn: Acetyl-coenzym 96.4 0.11 2.3E-06 45.6 12.6 44 224-267 425-468 (544)
266 PF01733 Nucleoside_tran: Nucl 96.3 0.0011 2.3E-08 55.5 -0.0 115 140-259 187-303 (309)
267 PF02487 CLN3: CLN3 protein; 96.2 0.056 1.2E-06 46.4 10.0 132 140-293 64-197 (402)
268 KOG3098|consensus 96.2 0.071 1.5E-06 46.7 10.4 106 138-260 53-158 (461)
269 KOG1237|consensus 96.1 0.86 1.9E-05 41.6 17.2 163 124-286 61-240 (571)
270 KOG3574|consensus 96.0 0.26 5.7E-06 41.8 12.3 46 224-269 389-434 (510)
271 PRK03612 spermidine synthase; 95.4 0.65 1.4E-05 42.0 13.9 47 238-284 143-190 (521)
272 PF13000 Acatn: Acetyl-coenzym 94.8 0.69 1.5E-05 40.8 11.5 51 122-172 21-77 (544)
273 KOG3762|consensus 94.8 0.034 7.4E-07 49.0 3.7 64 116-179 26-90 (618)
274 COG3202 ATP/ADP translocase [E 94.6 1.4 3E-05 38.9 12.8 119 147-265 74-209 (509)
275 KOG4332|consensus 94.3 0.15 3.2E-06 41.0 5.9 52 128-179 64-116 (454)
276 KOG3574|consensus 94.2 0.85 1.9E-05 38.9 10.4 68 100-171 31-104 (510)
277 KOG1479|consensus 94.2 3.3 7.2E-05 35.8 15.4 48 114-161 31-82 (406)
278 KOG1479|consensus 93.6 0.55 1.2E-05 40.4 8.4 107 144-259 292-398 (406)
279 TIGR00939 2a57 Equilibrative N 91.5 4 8.7E-05 36.1 11.4 29 143-171 53-81 (437)
280 KOG3880|consensus 91.0 0.52 1.1E-05 38.8 5.0 126 144-292 71-200 (409)
281 PF11947 DUF3464: Protein of u 89.2 1.9 4.1E-05 31.5 6.2 39 217-255 107-145 (153)
282 PF03219 TLC: TLC ATP/ADP tran 88.0 18 0.0004 32.6 12.8 36 140-175 324-359 (491)
283 KOG4332|consensus 86.6 16 0.00035 29.9 13.1 139 138-286 285-426 (454)
284 PF05631 DUF791: Protein of un 77.6 29 0.00063 29.6 9.3 55 106-161 250-304 (354)
285 COG5336 Uncharacterized protei 77.4 11 0.00024 25.5 5.3 30 145-174 52-82 (116)
286 KOG0637|consensus 76.8 3.9 8.4E-05 35.9 4.0 35 139-173 336-370 (498)
287 TIGR00880 2_A_01_02 Multidrug 76.7 23 0.00049 24.7 9.3 40 138-177 90-129 (141)
288 COG5336 Uncharacterized protei 75.8 16 0.00034 24.8 5.7 35 234-268 36-70 (116)
289 COG3202 ATP/ADP translocase [E 74.3 66 0.0014 28.9 13.4 40 141-180 327-367 (509)
290 KOG3810|consensus 73.5 19 0.00042 30.7 7.0 99 151-266 58-156 (433)
291 PRK10697 DNA-binding transcrip 72.8 5.3 0.00012 27.8 3.2 26 14-39 37-68 (118)
292 COG1288 Predicted membrane pro 68.8 83 0.0018 27.8 13.0 28 12-39 217-246 (481)
293 PF07857 DUF1632: CEO family ( 66.3 25 0.00055 28.4 6.2 29 236-268 75-103 (254)
294 PF03547 Mem_trans: Membrane t 65.7 65 0.0014 28.0 9.3 19 145-163 5-23 (385)
295 COG2274 SunT ABC-type bacterio 63.6 1.2E+02 0.0026 29.1 10.9 25 138-162 160-184 (709)
296 PF10183 ESSS: ESSS subunit of 61.1 19 0.00041 24.6 4.1 28 11-38 57-85 (105)
297 COG3462 Predicted membrane pro 58.2 30 0.00066 23.4 4.4 24 8-31 44-67 (117)
298 PF01405 PsbT: Photosystem II 58.0 20 0.00043 17.7 2.6 11 29-39 18-28 (29)
299 PRK10263 DNA translocase FtsK; 57.9 39 0.00085 34.3 6.9 20 144-163 61-80 (1355)
300 KOG2601|consensus 57.3 1.3E+02 0.0029 26.3 9.5 42 243-284 178-219 (503)
301 cd02434 Nodulin-21_like_3 Nodu 56.7 1E+02 0.0022 24.6 13.2 21 148-168 180-200 (225)
302 PF05297 Herpes_LMP1: Herpesvi 53.1 4.2 9E-05 32.8 -0.2 13 284-296 178-190 (381)
303 cd02432 Nodulin-21_like_1 Nodu 51.8 1.2E+02 0.0026 24.0 12.9 21 148-168 174-194 (218)
304 KOG3880|consensus 51.6 72 0.0016 27.0 6.5 60 202-261 340-399 (409)
305 PRK11875 psbT photosystem II r 51.4 28 0.00061 17.4 2.6 9 31-39 20-28 (31)
306 TIGR02978 phageshock_pspC phag 50.9 19 0.00042 25.2 2.8 27 13-39 31-63 (121)
307 KOG2881|consensus 50.1 67 0.0014 26.0 5.8 26 155-180 260-285 (294)
308 cd02433 Nodulin-21_like_2 Nodu 49.8 1.3E+02 0.0029 24.1 13.3 20 149-168 190-209 (234)
309 KOG0055|consensus 49.8 3E+02 0.0064 28.3 11.2 31 2-32 797-827 (1228)
310 CHL00031 psbT photosystem II p 47.5 32 0.0007 17.5 2.5 9 31-39 20-28 (33)
311 TIGR00769 AAA ADP/ATP carrier 45.4 2.4E+02 0.0051 25.6 18.1 56 227-282 289-345 (472)
312 PF04024 PspC: PspC domain; I 45.0 37 0.00079 20.5 3.0 27 12-38 30-60 (61)
313 PF07672 MFS_Mycoplasma: Mycop 41.1 14 0.00031 29.8 1.1 55 236-290 2-61 (267)
314 KOG3097|consensus 40.4 2.4E+02 0.0052 24.3 8.9 33 144-176 67-99 (390)
315 PF10183 ESSS: ESSS subunit of 40.2 30 0.00064 23.6 2.4 38 262-299 52-89 (105)
316 PF01988 VIT1: VIT family; In 40.0 1.8E+02 0.004 22.8 12.4 14 152-165 174-187 (213)
317 TIGR02230 ATPase_gene1 F0F1-AT 39.5 1.2E+02 0.0026 20.5 7.2 29 149-177 57-85 (100)
318 PF01914 MarC: MarC family int 38.8 1.9E+02 0.0041 22.6 8.4 55 230-284 28-83 (203)
319 PLN02601 beta-carotene hydroxy 38.6 1.9E+02 0.0041 23.7 6.7 22 141-162 136-157 (303)
320 PRK02237 hypothetical protein; 37.8 1E+02 0.0022 21.1 4.5 46 137-182 58-103 (109)
321 PF02694 UPF0060: Uncharacteri 35.2 87 0.0019 21.4 3.9 45 138-182 57-101 (107)
322 PF12832 MFS_1_like: MFS_1 lik 34.4 1.2E+02 0.0027 19.1 7.0 38 239-276 34-71 (77)
323 COG4769 Predicted membrane pro 33.4 2.1E+02 0.0045 21.5 6.7 27 143-169 81-107 (181)
324 PF13829 DUF4191: Domain of un 32.8 45 0.00098 26.3 2.6 57 3-59 41-99 (224)
325 COG3086 RseC Positive regulato 31.1 2.1E+02 0.0046 20.9 6.6 40 131-170 67-107 (150)
326 COG2119 Predicted membrane pro 31.1 2.2E+02 0.0047 21.9 5.8 36 144-179 143-178 (190)
327 PF02990 EMP70: Endomembrane p 31.0 4.3E+02 0.0093 24.4 9.6 23 142-164 304-326 (521)
328 PF04281 Tom22: Mitochondrial 29.1 50 0.0011 23.8 2.2 24 229-252 60-83 (137)
329 PF11299 DUF3100: Protein of u 28.9 68 0.0015 25.5 3.0 33 226-259 193-225 (241)
330 TIGR00267 conserved hypothetic 28.5 2.6E+02 0.0056 21.1 11.5 25 147-171 125-149 (169)
331 PF14715 FixP_N: N-terminal do 27.3 1.3E+02 0.0028 17.4 3.2 25 12-36 23-47 (51)
332 cd02435 CCC1 CCC1. CCC1: This 27.0 3.4E+02 0.0074 21.9 14.0 19 14-32 49-67 (241)
333 PF03606 DcuC: C4-dicarboxylat 26.4 3.5E+02 0.0075 24.5 7.4 21 17-37 5-25 (465)
334 KOG4830|consensus 25.4 52 0.0011 26.9 1.9 45 123-167 39-93 (412)
335 TIGR00986 3a0801s05tom22 mitoc 25.0 88 0.0019 22.7 2.7 24 228-251 57-80 (145)
336 PF07857 DUF1632: CEO family ( 24.6 1.8E+02 0.0039 23.7 4.8 20 15-34 116-135 (254)
337 COG1268 BioY Uncharacterized c 24.1 3.4E+02 0.0073 20.9 6.3 21 144-164 91-111 (184)
338 PF06027 DUF914: Eukaryotic pr 24.1 4.6E+02 0.01 22.5 12.4 24 141-164 173-196 (334)
339 PF09605 Trep_Strep: Hypotheti 23.9 3.4E+02 0.0073 20.8 9.2 43 141-183 34-76 (186)
340 PF06912 DUF1275: Protein of u 23.1 3.6E+02 0.0079 20.9 13.8 44 141-184 52-98 (209)
341 KOG4473|consensus 22.5 2.4E+02 0.0052 22.2 4.8 41 234-274 158-198 (247)
342 PF11151 DUF2929: Protein of u 22.1 1.1E+02 0.0023 18.2 2.4 27 12-38 30-56 (57)
343 KOG2881|consensus 22.0 4.5E+02 0.0098 21.6 6.7 19 292-310 155-174 (294)
344 PF15050 SCIMP: SCIMP protein 22.0 45 0.00098 23.1 0.8 40 13-52 4-45 (133)
345 COG1422 Predicted membrane pro 21.8 3.9E+02 0.0085 20.8 11.5 11 149-159 181-191 (201)
346 PF13493 DUF4118: Domain of un 21.5 1.3E+02 0.0029 20.0 3.2 24 142-165 82-105 (105)
347 KOG4112|consensus 20.9 1.6E+02 0.0034 19.5 3.0 40 244-286 27-66 (101)
348 PF11511 RhodobacterPufX: Intr 20.8 1.3E+02 0.0028 18.5 2.5 9 288-296 49-57 (67)
349 PRK13453 F0F1 ATP synthase sub 20.7 2.5E+02 0.0054 21.2 4.7 23 12-34 17-39 (173)
350 KOG2601|consensus 20.5 92 0.002 27.2 2.5 31 226-256 408-438 (503)
No 1
>KOG0569|consensus
Probab=100.00 E-value=5.6e-38 Score=266.63 Aligned_cols=295 Identities=26% Similarity=0.424 Sum_probs=251.5
Q ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhcccCCChHHHHh-cCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhh
Q psy11545 6 SLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLS-QGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSR 84 (337)
Q Consensus 6 ~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (337)
++|....|++++.+..+++++.++...++||||||+.. |++.++|+++++.++.++++.++..++.++.++++. .+.
T Consensus 176 ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~--~~~ 253 (485)
T KOG0569|consen 176 LLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEEL--EKK 253 (485)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcc--ccc
Confidence 34555589999999999999999999999999999998 899999999999999887644443333333222221 234
Q ss_pred cHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy11545 85 NFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMG 163 (337)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g 163 (337)
+..+.++.++++..|+.+.+.+.+...++++|.+...+|...++.+.|++.+. .+.+...++...+.++++.+++||+|
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g 333 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG 333 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999999998655 88889999999999999999999999
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhh
Q psy11545 164 RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 243 (337)
Q Consensus 164 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 243 (337)
||++++.++.++.+..+++.......+... ....+..+...+.+...++.|.+|++|.+.+|++|++.|+.+++
T Consensus 334 RRpLll~~~~~~~~~~~~~~~~~~l~~~~~------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 334 RRPLLLISLSLMAVALLLMSIALFLSNSFG------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 999999999999988888777655411100 02234456777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhccc
Q psy11545 244 LTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGK 309 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 309 (337)
+..+.+++..++....++.+.+.+|- ..|+.+.+.+++..++.++++||||+|+..|+.++.+++
T Consensus 408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999887 688899999999999999999999999999998887766
No 2
>KOG0254|consensus
Probab=99.98 E-value=2.2e-29 Score=223.86 Aligned_cols=304 Identities=28% Similarity=0.467 Sum_probs=239.1
Q ss_pred ccccchhhh-----hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Q psy11545 3 FEYSLGAFL-----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRAN-NYDVEKEVQGLYEFSK 76 (337)
Q Consensus 3 ~~~~~~~~~-----~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~ 76 (337)
+++.++... +||..+.+..+++++..+..+++||||||+.++|+.+++++.+.+++.. +.+.+.+.++.+....
T Consensus 193 ~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~ 272 (513)
T KOG0254|consen 193 LGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLL 272 (513)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 344455444 6999999999999999888778999999999999999999999999984 3444444444441111
Q ss_pred HHhhhhhhcHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy11545 77 RQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASC 156 (337)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 156 (337)
.+. .....+..+.+.+. +..+++.++.+.+..+++++|.+...+|.+.+++..|.+.+......+.++...++.+++.
T Consensus 273 ~~~-~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~ 350 (513)
T KOG0254|consen 273 VEA-EVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVAT 350 (513)
T ss_pred Hhh-hcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 111 01111112333333 7788889999999999999999999999999999998874447777888889999999999
Q ss_pred HHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCcc
Q psy11545 157 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK 236 (337)
Q Consensus 157 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 236 (337)
++.||+|||++++.+...+.++.++++........+.. ......+..+...+++...++.++.+++|.+.+|.+|.+
T Consensus 351 ~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 351 YLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN---SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred HHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC---cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 99999999999999999999999988876554221100 002346677777888888899999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHH-HhheeccCCCCCCHHHHHHHhccccC
Q psy11545 237 VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTI-FFYVYLPETKNKTLQEIEEQFAGKSK 311 (337)
Q Consensus 237 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~ 311 (337)
.|+.+.++....+++...+....+....+..+....|..+++.+.+... +.++++||||+++++|+++.+.+...
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 9999999999999999999888888877766545678888888777777 78899999999999999887765544
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.97 E-value=1.9e-28 Score=217.85 Aligned_cols=273 Identities=13% Similarity=0.163 Sum_probs=178.0
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChH-HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKD-ACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
+||++|.+.++++++.++..+++||||||+..+++.+ ++++.+.+..+.+.+.+ .++.++.+++ ++..+.+++
T Consensus 202 ~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~ 275 (502)
T TIGR00887 202 MWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE--PDEVEKASTA----VEVPKASWS 275 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC--cccccchhcc----ccchhhhHH
Confidence 7999999999999988888888999999999988874 46666666654322111 1111111000 011123455
Q ss_pred HHhhcc---cchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-H------------HHHHHHHHHHHHHHHH
Q psy11545 91 AAIVEP---ACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-N------------LAAVIMGIVRLIFTIA 154 (337)
Q Consensus 91 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~------------~~~~~~~~~~~~~~~~ 154 (337)
+.++++ +.++.++.....++.... ..+....+.|.++++.|++.+. . ....+..++.+++.++
T Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 354 (502)
T TIGR00887 276 DFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWV 354 (502)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666532 222323322222232222 2445666788888888875321 1 1233344566778899
Q ss_pred HHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC
Q psy11545 155 SCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP 234 (337)
Q Consensus 155 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 234 (337)
+++++||+|||++++++..+.+++.+++++.... ............+..+++.+..+..+.+.+|.+|
T Consensus 355 ~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH------------LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh------------cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 9999999999999988887777766655542211 0111112222222333455566777888999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc----------CCccchHHHHHHHHHHHHHhheeccCCCCCCHHHHHH
Q psy11545 235 TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL----------TKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEE 304 (337)
Q Consensus 235 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 304 (337)
++.|+++.|+.+.++++++++++.+.+.+.+.. ++...+++++++++++.++ ++++|||+++++||+++
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 999999999999999999999999999988742 3345678888887777664 46789999999887653
No 4
>KOG0253|consensus
Probab=99.96 E-value=5.1e-28 Score=193.27 Aligned_cols=273 Identities=17% Similarity=0.211 Sum_probs=188.1
Q ss_pred chhhhhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcch---------HHHHHHHHHH--H
Q psy11545 7 LGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDV---------EKEVQGLYEF--S 75 (337)
Q Consensus 7 ~~~~~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~---------~~~~~~~~~~--~ 75 (337)
.....||||.....+.|..+.+...+++||||||...+|+.++|.+.++++.+.|... ..+.+|.++. .
T Consensus 223 vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~ 302 (528)
T KOG0253|consen 223 VMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLD 302 (528)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchh
Confidence 3344499999999999988888888999999999999999999999999998877531 1111111111 1
Q ss_pred HHHhhhhhhcHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcC--------------------CC-
Q psy11545 76 KRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG--------------------AH- 134 (337)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~- 134 (337)
+.+.+..+....+..+ +..++.++..+.....++...+. +++........++... .+
T Consensus 303 ~~~~~a~ke~rg~~~n-Llsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~ 380 (528)
T KOG0253|consen 303 DSKSSAAKEVRGGTTN-LLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV 380 (528)
T ss_pred hhhhccccccccchHh-hcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc
Confidence 1111111222223333 34566777777777776654444 2222222222222111 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHH
Q psy11545 135 VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFT 214 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
...+....+..+..+.|.++.++++||+|||+.+..+.++++++.+++... ..........+..-
T Consensus 381 ~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c---------------~~rn~~tvllf~ar 445 (528)
T KOG0253|consen 381 AKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC---------------KTRNAYTVLLFTAR 445 (528)
T ss_pred hhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh---------------cCcchhHHHHHHHH
Confidence 122566778899999999999999999999999999999888877766551 12223333344444
Q ss_pred HHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 215 AASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 215 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
.+...++. +.|+|.+|++|+..|+++.|.+.....+|+++.|.+. +.....-..+..+++++++++.+...++--||
T Consensus 446 afisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 446 AFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred HHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 44555544 4499999999999999999999999999999999888 44444555678888999998888777776799
Q ss_pred CCCCH
Q psy11545 295 KNKTL 299 (337)
Q Consensus 295 ~~~~~ 299 (337)
|++.+
T Consensus 523 kGR~l 527 (528)
T KOG0253|consen 523 KGRSL 527 (528)
T ss_pred CCCCC
Confidence 98863
No 5
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.96 E-value=1.5e-33 Score=247.93 Aligned_cols=282 Identities=29% Similarity=0.514 Sum_probs=212.8
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 91 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (337)
+||+.+.+.++++++..+..+++||||||+..|+|.+||++.++++++.+..+++..++.++.++ .++.+.++.+
T Consensus 169 ~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 243 (451)
T PF00083_consen 169 GWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE-----SQESKASWRD 243 (451)
T ss_pred cccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc-----ccccceeeee
Confidence 39999999999999888888889999999999999999999999866553322222221111111 1111145666
Q ss_pred HhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHH
Q psy11545 92 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFIS 171 (337)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 171 (337)
.+++++++++....+.+..+..+++.+...+|.+.++++.+.+.+ ........+...++.+++.+++||+|||++++.+
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~ 322 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG 322 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 777766667777777788888788888888999999888877644 4555566677788888888999999999999999
Q ss_pred hHHHHHHHHHHH-HHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHH
Q psy11545 172 SIGCGVSMTGLG-LYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 250 (337)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 250 (337)
..+++++.+.++ ......+.+ .......+.....+...++.++.++.+.+.+|.+|++.|+++.++....++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~ 395 (451)
T PF00083_consen 323 LLLMAICSLILGIIFFLGVSSS-------SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGR 395 (451)
T ss_pred cccccccccccccccccccccc-------cccccccceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 888887777665 111110000 011333444444555566667788888999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHh
Q psy11545 251 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQF 306 (337)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 306 (337)
+++++++.+.+.+.+..+....+.++++++++..++.++++|||++++++|+++++
T Consensus 396 i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 396 IGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 99999999999888877755678888888888888888999999999999998753
No 6
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.96 E-value=8.1e-27 Score=211.05 Aligned_cols=267 Identities=20% Similarity=0.266 Sum_probs=185.0
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcch---HHHH---HHHHHHHHHH---h-h-
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDV---EKEV---QGLYEFSKRQ---E-T- 80 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~---~~~~---~~~~~~~~~~---~-~- 80 (337)
+||+++++.++++++.+++.+++||||||+..+++.+++.+.++++++.+... +... ++.+...... + +
T Consensus 332 gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (742)
T TIGR01299 332 SWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIES 411 (742)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccc
Confidence 79999999999988888888889999999999999999999999998765321 1111 1111100000 0 0
Q ss_pred hhh-----------h----cHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc--------------
Q psy11545 81 QKS-----------R----NFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-------------- 131 (337)
Q Consensus 81 ~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 131 (337)
... . ...++.+ +.+++++++++++++.+++..+. ++++..|.|.+++..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~-lf~~~~~~~tl~l~~~wf~~~~~-yygl~~w~P~~~~~~~~~~~~~~~~~~~~ 489 (742)
T TIGR01299 412 DTGTWYQRCFVRALSEGGGIWGNFLR-CFNPEVREITIKLMGVWFTLSFG-YYGLSVWFPDMIKHLQADDYAALTKNFPG 489 (742)
T ss_pred cccchhhcchhhhhhhhhhHHHHHHH-HcCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 000 0 0112344 33566777788777777766665 888888988775431
Q ss_pred ----------------------------CCC-------------------------------------------------
Q psy11545 132 ----------------------------GAH------------------------------------------------- 134 (337)
Q Consensus 132 ----------------------------g~~------------------------------------------------- 134 (337)
|+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 569 (742)
T TIGR01299 490 DKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDS 569 (742)
T ss_pred cchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhh
Confidence 000
Q ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHh
Q psy11545 135 -------------------------VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFAT 189 (337)
Q Consensus 135 -------------------------~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 189 (337)
........+.+++.+++.+++|+++||+|||++++++.++.+++++++++ .
T Consensus 570 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~---~- 645 (742)
T TIGR01299 570 EFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF---G- 645 (742)
T ss_pred hhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH---H-
Confidence 00123355667888999999999999999999999998888888777665 1
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC
Q psy11545 190 KDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 269 (337)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (337)
.+....++..++++++.+ +..+..+++++|++|++.|++++|+.+....+|++++|.+.+.+.+. +.
T Consensus 646 -----------~s~~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~ 712 (742)
T TIGR01299 646 -----------NSESAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TK 712 (742)
T ss_pred -----------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 122223333333333333 34456689999999999999999999999999999999999988774 45
Q ss_pred ccchHHHHHHHHHHHHHhheeccCCCCCC
Q psy11545 270 EGTFLMYGCISLLGTIFFYVYLPETKNKT 298 (337)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 298 (337)
..+|++++++.++++++.+ ++|||+++.
T Consensus 713 ~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 713 AAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 5577777777777665544 569998765
No 7
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.95 E-value=8.8e-26 Score=200.34 Aligned_cols=279 Identities=25% Similarity=0.522 Sum_probs=192.1
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
.|||++|++.++++++..+..+++||+|+|+..+++.+++++..++..+.+. .++..++.++ ..+. +... ..
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-~~~~---~~ 262 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQALQEIKH---SLDH-GRKT---GG 262 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHH---HHHH-hhhh---hh
Confidence 4899999999998888777777799999999888888887777666544321 1111111111 0000 0000 00
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF 169 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 169 (337)
..+. .........+....+.+..+.+...++.|.+.++.|.+... .+.....++..+++.+++++++||+|||++++
T Consensus 263 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i 340 (479)
T PRK10077 263 KLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQI 340 (479)
T ss_pred hhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 0111 01111222233344455555666778889998888887544 66667788889999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHH
Q psy11545 170 ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC 249 (337)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 249 (337)
.+.++.+++.+.+...... .............+..+++..+.+..+.+++|.+|++.|++++|+.+..+
T Consensus 341 ~~~~~~~v~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~ 409 (479)
T PRK10077 341 IGALGMAIGMFSLGTAFYT-----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQ 409 (479)
T ss_pred HhHHHHHHHHHHHHHHHhc-----------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHH
Confidence 9998888877766542221 11222333334444455555555777899999999999999999999999
Q ss_pred HHHHHHHHHHhHHHH------HhcCCccchHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhcccc
Q psy11545 250 HFFIFLTVKSYNMFQ------THLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKS 310 (337)
Q Consensus 250 ~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 310 (337)
+++.++++.+++.+. +..+++..|++++++++++.++.+++.||+|+++.+|.++.+++..
T Consensus 410 ~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 476 (479)
T PRK10077 410 WIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET 476 (479)
T ss_pred HHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence 999999987776554 4678888888888888888777777889999999988877765544
No 8
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.94 E-value=2.4e-24 Score=191.25 Aligned_cols=286 Identities=24% Similarity=0.467 Sum_probs=192.5
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
..+||+.|++.++..++..+..+++||+|+++..+++.+++++..++....+.......++..........+.+.....+
T Consensus 192 ~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (481)
T TIGR00879 192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSW 271 (481)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccH
Confidence 34899999998777777777777899999998887777776666555444332222211111111111000011111112
Q ss_pred HHHhhccc-chhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 90 LAAIVEPA-CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
.+.++..+ .....+....+..+....+.....++.|.+.++.|++... ........++.+++.+++++++||+|||+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 351 (481)
T TIGR00879 272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL 351 (481)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22332211 2334444444555555555667788889988888887544 677778888899999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHH
Q psy11545 168 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 247 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 247 (337)
+..+.++.+++.+.+.+........ .+ .......+....++..+++.+..+....++.|.+|++.|+++.++.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 426 (481)
T TIGR00879 352 LLIGAAGMAICLFVLGILGASFVTG-SS----KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-cc----cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHH
Confidence 9888777777666665322210000 00 001333444445555566666667777888999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCCCCHH
Q psy11545 248 ACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQ 300 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 300 (337)
..++++++++.+.+.+.+..+|...|++.+++++++.++.+++.||+++++.+
T Consensus 427 ~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 427 ANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 99999999999999999999999999999999888888777888998876653
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=99.93 E-value=1.6e-24 Score=193.49 Aligned_cols=262 Identities=23% Similarity=0.309 Sum_probs=173.8
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVE-KEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
+||+.|++.++++++..+..+++||||||+..+++.+++.+.+++..+.+.... ++..+.+. +++.+ ++.++.+..
T Consensus 241 ~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 317 (505)
T TIGR00898 241 DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSL-EKDLS--SSKKQYSFL 317 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhh-hhhhh--hccCCCcHH
Confidence 699999999999988887777899999999999999999988887766543211 11111100 00000 111234567
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFI 170 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 170 (337)
+.++++..+...+.....++..... ++....+ ....+. +......+.++..+++.++.++++||+|||+.+.+
T Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~ 390 (505)
T TIGR00898 318 DLFRTPNLRKTTLCLMMLWFTTAFS-YYGLVLD----LGNLGG--NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAA 390 (505)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHH-HHHHhcc----ccccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7888887766655544444332221 2222222 222222 34555667788889999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHH
Q psy11545 171 SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 250 (337)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 250 (337)
+.++.+++.+++.+.. ....+.......+...+.. +..+..+.+.+|.+|++.|++++|+.+....
T Consensus 391 ~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 456 (505)
T TIGR00898 391 SLLLAGVALLLLLFVP-------------VDLYFLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMAR 456 (505)
T ss_pred HHHHHHHHHHHHHHcC-------------CCchHHHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHH
Confidence 8888777766655411 0111222222222222222 2335557899999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCCCCHH
Q psy11545 251 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQ 300 (337)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 300 (337)
+|++++|.+.+ + +..++..++.+++++.+++.++ .+++|||++++++
T Consensus 457 ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~ 503 (505)
T TIGR00898 457 VGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLP 503 (505)
T ss_pred HHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCC
Confidence 99999999988 4 4456666788888877777665 4568999987654
No 10
>KOG0252|consensus
Probab=99.89 E-value=2.3e-23 Score=171.62 Aligned_cols=273 Identities=12% Similarity=0.164 Sum_probs=186.9
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcC-ChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQG-RKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
-||..|.+.++|+++++..++.+|||+||-.... +.+.+.+ +..+.... +.++.++ .+...+..++....+.
T Consensus 223 vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~---d~~k~~~~---~~~~~~~-~~~~~~~~~~~~~~F~ 295 (538)
T KOG0252|consen 223 VWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAG---DMKKVLSV---DIEAEST-AESDVPPPSNSFGLFS 295 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhh---cccccccc---ccchhhc-cccCCCCcccccchHH
Confidence 5999999999999999999999999999874332 2233321 11111111 0000000 0000111111222344
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh--H--------HHHHHHHHHHHHHHHHHHHHhh
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN--N--------LAAVIMGIVRLIFTIASCIMMK 160 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~--------~~~~~~~~~~~~~~~~~g~l~d 160 (337)
..+..+ +-+.++.....++..... ++....+...+++..|+.... . ....+...+.++|..+...++|
T Consensus 296 ~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id 373 (538)
T KOG0252|consen 296 RLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFID 373 (538)
T ss_pred HHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEee
Confidence 444444 445566666666655554 677788888888887775332 2 1122233334456677778899
Q ss_pred hcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhh
Q psy11545 161 KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGI 240 (337)
Q Consensus 161 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 240 (337)
++|||+..+.+++++++..+.++.... + .......++...+...+...+....+..+.+|.+|++.|++
T Consensus 374 ~iGRk~iq~~GF~~~~i~~~~~~~~y~---~--------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t 442 (538)
T KOG0252|consen 374 IIGRKYIQLMGFFIMTIFFFVIAGPYN---Q--------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST 442 (538)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHcCCcc---c--------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence 999999999999999888877776211 1 01333445555666677778888888899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHH-----hcCCccchHHHHHHHHHHHHHhheeccCCCCCCHHHHHHH
Q psy11545 241 VGGLTTCACHFFIFLTVKSYNMFQT-----HLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQ 305 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 305 (337)
+.|+..+.+..|++++...+.++.+ ..|.+..+++++++++++.++ .+++|||+++++||++.+
T Consensus 443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF-TLLIPETKGKSLEEISNE 511 (538)
T ss_pred hhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe-eEEeecccccCHHHhcCh
Confidence 9999999999999999999999999 788899999999999988766 566889999999988433
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.88 E-value=9.8e-21 Score=167.96 Aligned_cols=245 Identities=12% Similarity=0.073 Sum_probs=142.6
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
.|||++|++.++++++.+++..++||||+|...+++.++.. + + . . .+.++.++.
T Consensus 189 ~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-------~-~--------~-------~---~~~~~~~~~ 242 (490)
T PRK10642 189 WGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-------R-E--------G-------L---QDGPKVSFK 242 (490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-------c-c--------c-------c---cccccCCHH
Confidence 48999999988777766666667999998764322111100 0 0 0 0 000111233
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
+.+++ .++.........++.. ..++....|.|.++.+ .|++... ........++..++.++.|+++||+|||+.+
T Consensus 243 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 319 (490)
T PRK10642 243 EIATK--HWRSLLTCIGLVIATN-VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV 319 (490)
T ss_pred HHHHH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34432 2222332222222222 2245566678887754 5776444 5555667788889999999999999999988
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
..+.++..++.+.+.... . ..+....+....+.+.+.+.+. +....+.+|.+|++.|+++.|+.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~ 386 (490)
T PRK10642 320 ILGSVALFVLAIPAFILI-N-----------SNVIGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIRYSALAAAFNI 386 (490)
T ss_pred HHHHHHHHHHHHHHHHHH-h-----------CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccchHHHHHHHHH
Confidence 777654443332211111 1 0112222222222222222222 23356778999999999999987777
Q ss_pred HHHHHHHHHHHhHHHHHhcC-CccchHHHHHHHHHHHHHhheeccCCCCCC
Q psy11545 249 CHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYVYLPETKNKT 298 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 298 (337)
..+++.++|.+.+++.+..+ |+.++++..+.++++.+. .+++||++++.
T Consensus 387 ~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~~ 436 (490)
T PRK10642 387 SVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCCC
Confidence 78888899999999887654 455555555555555544 34569986543
No 12
>KOG0255|consensus
Probab=99.87 E-value=5.7e-20 Score=164.57 Aligned_cols=272 Identities=20% Similarity=0.272 Sum_probs=185.6
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHhhhhhhcHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNY---DVEKEVQGLYEFSKRQETQKSRNFKE 88 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
+||+.+++..+++++.++++++.||||||+..+++.+++.+.++++.+.|. ..++..++.. ...+.......+...
T Consensus 232 ~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 310 (521)
T KOG0255|consen 232 DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL-LLRPLKLLFTEPKIS 310 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HhhHhhhhccCCCCc
Confidence 899999999999999888877788999999999999999999999877542 2222222211 111111112223345
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
+.+.++.+..++.++...+.++.. ...++. ..+...+++.+.+....+.+.....+....+...|++|||...
T Consensus 311 ~~~l~~~~~l~~~~~~~~~~~~~~------~~~y~g-l~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~ 383 (521)
T KOG0255|consen 311 FLDLFRTPRLRYRTLYLLFIWFVF------SLVYYG-LSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPL 383 (521)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHH------hHHHHh-hhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHH
Confidence 778888877777666666666422 122222 1222233454556777777778888888889999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
..+..+..++++..++.... ...+...+...+..++.+.++... +.+..|++|+..|..+.+..+..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~ 450 (521)
T KOG0255|consen 384 FLSLFLAGIGLLLFGWLPDD------------LGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAA 450 (521)
T ss_pred HHHHHHHHHHHHHHHHhhcc------------chhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHH
Confidence 99999999888888773332 111233333334444444444444 89999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCCCCHHHHHHH
Q psy11545 249 CHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQ 305 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 305 (337)
..++++++|.+...... ......+.+++..+.+...+...++|||+++.+.+..++
T Consensus 451 ~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 451 ARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence 99999999887654443 233333334566666666666688999999887654443
No 13
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.3e-19 Score=147.37 Aligned_cols=245 Identities=13% Similarity=0.120 Sum_probs=157.1
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhh--hhcHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQK--SRNFK 87 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 87 (337)
.+||..|++.+++++++.+..++ ++|+|+- .|-++ .++.++ +..+..+++++.+ ...+.
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GLP~-----ie~~~~----------d~~e~~~~~~~~~~ls~~~i 243 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGLPP-----IEEYRG----------DPLEIYEEEKENEGLTAWQI 243 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCC-----HHHhhc----------CchhhhhhhccCCCccHHHH
Confidence 39999999999999988777665 8999841 11110 111111 1111100111001 11222
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc--C
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM--G 163 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--g 163 (337)
-....++||..|...+..+++.. .-+.+..|.|.++.+. |++... .+....+-.++++|++++||++||+ |
T Consensus 244 ~~~YVL~Nk~iW~la~a~vfvYi-----vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg 318 (448)
T COG2271 244 FVKYVLKNKLIWLLALANVFVYV-----VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG 318 (448)
T ss_pred HHHHHHcChHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Confidence 33445666654433333233332 2677889999888775 787544 8888999999999999999999986 6
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhh
Q psy11545 164 RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 243 (337)
Q Consensus 164 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 243 (337)
||....+.+.+....+++... .. +..++.......+..+++-.+..-+.-..+.|..|.+..|++.|
T Consensus 319 rR~p~~~i~~~~i~~~~~~~w--~~-----------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~G 385 (448)
T COG2271 319 RRGPMALIFMLLITASLVLYW--LA-----------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATG 385 (448)
T ss_pred ccchHHHHHHHHHHHHHHHHH--cC-----------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhc
Confidence 776554443333322222222 11 12234444444444555555555555677889999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheec
Q psy11545 244 LTTCACHF-FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYL 291 (337)
Q Consensus 244 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (337)
+...+.++ |...+....+++.|.+||...|+++.+.++++.++.....
T Consensus 386 f~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 386 FVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999 8888888899998989999999988888877776654443
No 14
>PRK09952 shikimate transporter; Provisional
Probab=99.82 E-value=3e-18 Score=149.99 Aligned_cols=236 Identities=14% Similarity=0.104 Sum_probs=134.3
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
.|||++|++.+++.++...+...+||+|+|...+++.++.+ ++.+ ...
T Consensus 196 ~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~------------------------------~~~~--~~~ 243 (438)
T PRK09952 196 WGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK------------------------------KRIP--VIE 243 (438)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc------------------------------ccCC--HHH
Confidence 48999999998887766555556899997643221110000 0000 011
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
..+++++.+.... ...++..+ +.+....+.|.++. +.|++... .......++...++.++.|+++||+|||+.+
T Consensus 244 ~l~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~ 319 (438)
T PRK09952 244 ALLRHPGAFLKII---ALRLCELL-TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY 319 (438)
T ss_pred HHHHchHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1233332222111 11111111 13334455665554 45666433 3444556677788889999999999999988
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
..+.++.+++.+.+...... .......+....+...+.+. ..+..+++.+|.+|++.|+++.++.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~tg~g~~~~~ 387 (438)
T PRK09952 320 ITGALIGTLSAFPFFMALEA-----------QSIFWIVFFSIMLANIAHDM-VVCVQQPMFTEMFGASYRYSGAGVGYQV 387 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence 87766555443332221111 01122222222222222222 2344578899999999999999997766
Q ss_pred HH-HHHHHHHHHhHHHHHhc--CCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 249 CH-FFIFLTVKSYNMFQTHL--TKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 249 ~~-~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
.. +++.++|.+.+++.+.. +|...+...+++.+++.+.. +.++|++
T Consensus 388 ~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~ 436 (438)
T PRK09952 388 ASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence 54 88999999999998854 35556666666666665543 3456643
No 15
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.81 E-value=2.1e-18 Score=150.32 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=121.9
Q ss_pred hhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 120 VTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 120 ~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
...+.|.+.++ .|.+... +.......++.+++.++.+++.||.++++.+..+.++.+++.+.+.. .
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~---~--------- 309 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL---M--------- 309 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc---c---------
Confidence 34456777777 6777444 67777888999999999999999987777777777666665554443 1
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (337)
.+.+...+...+++.+.+ ...+...+++.|..|++.||++.|+.+....+|..+++.+.|.+.+..|....+...+
T Consensus 310 ---~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~ 385 (417)
T PRK10489 310 ---PMWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASG 385 (417)
T ss_pred ---chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHH
Confidence 122222222233332222 2234446788899999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhheeccCCCCCCHHHHH
Q psy11545 278 CISLLGTIFFYVYLPETKNKTLQEIE 303 (337)
Q Consensus 278 ~~~~~~~~~~~~~~~e~~~~~~~~~~ 303 (337)
++.++..++.+...|++|+++.+|.+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 386 FGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHHHHHHHHhccccccccccccc
Confidence 77777666667778888887766654
No 16
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.81 E-value=7.2e-18 Score=140.12 Aligned_cols=227 Identities=16% Similarity=0.195 Sum_probs=153.1
Q ss_pred ccccchhhhhHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Q psy11545 3 FEYSLGAFLSWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQ 81 (337)
Q Consensus 3 ~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (337)
+|..+|++.|||..|+..++.+++.++..+. +| |+-. .+ +
T Consensus 156 LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~-----------------------------------~ 196 (394)
T COG2814 156 LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SG-----------------------------------S 196 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CC-----------------------------------C
Confidence 4667888889999999999999988876664 89 3100 00 0
Q ss_pred hhhcHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhh
Q psy11545 82 KSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMK 160 (337)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d 160 (337)
...+..+..+.+++++.+..+....+.... .+..+.|..|.+.+..|++.+. .+....++++.++|+.++|++.|
T Consensus 197 ~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g----~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d 272 (394)
T COG2814 197 LPGPLRTLLRLLRRPGVLLGLLATFLFMTG----HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272 (394)
T ss_pred CCcchhHHHHHhcCchHHHHHHHHHHHHcc----hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 112233455677887666544443333221 1333445555555566888655 89999999999999999999999
Q ss_pred hcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhh
Q psy11545 161 KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGI 240 (337)
Q Consensus 161 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 240 (337)
| +.|+.+.....+.++..+.+.+.. .+.+.......+.+...... .........+ .-++.+..
T Consensus 273 r-~~~~~l~~~~~l~a~~~l~l~~~~--------------~~~~~~~~~~~~wg~a~~~~-~~~~~~~~a~-~~p~~~~~ 335 (394)
T COG2814 273 R-GPRRALIAALLLLALALLALTFTG--------------ASPALALALLFLWGFAFSPA-LQGLQTRLAR-LAPDAADL 335 (394)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHhc--------------chHHHHHHHHHHHHHHhhhh-hhHHHHHhcc-cCCCchHH
Confidence 9 888888887777777666655511 12223333333322222211 1111234444 33578899
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhhe
Q psy11545 241 VGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 289 (337)
+.+++....++|..+|..++|.+.++.|+....++.+++.+++.++...
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888888877766543
No 17
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.80 E-value=1.2e-18 Score=152.35 Aligned_cols=164 Identities=12% Similarity=0.077 Sum_probs=104.9
Q ss_pred cchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc--CChhhH-HHHhHHHHHHHHHHHHHHHHhcCC
Q psy11545 118 NPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM--GRRSLT-FISSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 118 ~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
..+..+.|.++. +.|++... ........++..++.++.|+++||+ ++|+.. ....+...+....+.. ...
T Consensus 260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~---- 334 (434)
T PRK11663 260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL-MPF---- 334 (434)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH-ccc----
Confidence 345567777774 45887544 6777788899999999999999998 333332 2221111111111111 000
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccc
Q psy11545 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGT 272 (337)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 272 (337)
.+...... ..+..+.+..+..........|.+|++.|+++.|+.++..++|++++|.+.+.+.+..||...
T Consensus 335 --------~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~ 405 (434)
T PRK11663 335 --------ASYVMQAA-CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGF 405 (434)
T ss_pred --------ccHHHHHH-HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHH
Confidence 11111111 111122222222223345678999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhheeccCCC
Q psy11545 273 FLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
|...+++.+++.+..+...++.+
T Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 406 FVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 98888888777766554444443
No 18
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.79 E-value=7.8e-18 Score=143.36 Aligned_cols=219 Identities=11% Similarity=0.054 Sum_probs=128.8
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHhc-ccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHH
Q psy11545 9 AFLSWDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 87 (337)
Q Consensus 9 ~~~~Wr~~f~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
...|||+.|++.++++++..++.+ ++||+|++. ++.. +.+ + ...
T Consensus 139 ~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~--------------~~~-------~-----------~~~ 183 (368)
T TIGR00903 139 TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGF--------------GFK-------D-----------AVK 183 (368)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCc--------------chH-------H-----------HHH
Confidence 344999999998888877665444 599998642 1000 000 0 001
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCh--
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRR-- 165 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-- 165 (337)
++.+.++++..+.......+. ....+.+..|.|.++++.|++........+.. ..+.+..++++||..||
T Consensus 184 ~~~~ll~~~~~~~~~~~~~~~-----~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~---~~g~~g~~~~~d~~~r~~~ 255 (368)
T TIGR00903 184 EFGALAGRKDLWIIGAILGFG-----VALFDNLAIWLEAALRPAGLEDIAGDAVALAI---LAGLIGVAVIPDRVARAGL 255 (368)
T ss_pred HHHHHHcChhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHHHHHhhHHhhhhhh
Confidence 245677776554332222222 22255667899999988777643333333333 34444457888877553
Q ss_pred -hhHHH-HhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhh
Q psy11545 166 -SLTFI-SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 243 (337)
Q Consensus 166 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 243 (337)
+.... ...+.++....+.. . .+....+... ....++..+..+..+++.+|.+|++.|+++.|
T Consensus 256 r~~~~~~~~~~~a~~~~~~~~---~------------~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G 319 (368)
T TIGR00903 256 RSIYIRAAALLIAAFFLALAF---E------------LNRLALFAFI-GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAG 319 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---c------------cccHHHHHHH-HHHHHhhhhhHHHHHHHHHHhcchhhcCcccc
Confidence 33222 22222222222221 1 1222222222 22223333333455789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhh
Q psy11545 244 LTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
+.+..+++++..+|.+.+.+.. +....|.++++..+++.+...
T Consensus 320 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 320 AIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988773 555678888887777776643
No 19
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.78 E-value=9.8e-17 Score=143.17 Aligned_cols=148 Identities=13% Similarity=0.016 Sum_probs=105.0
Q ss_pred chhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 119 PVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 119 ~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
....+.|.+++ +.|++... +.......++.+++.++.|+++||+|||+.+..+..+..+..+.+.. .
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~-------- 361 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA---I-------- 361 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---c--------
Confidence 34566777775 66887544 78888889999999999999999999999888776555544433222 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 276 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (337)
................+.+.+..+....++.|.+|++.|++++|+.+....+|+.++|.+.|.+.+..|++..+...
T Consensus 362 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~ 438 (496)
T PRK03893 362 ---GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASL 438 (496)
T ss_pred ---cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHH
Confidence 01122222222222222333334455678899999999999999999999999999999999999999988776555
Q ss_pred HHHH
Q psy11545 277 GCIS 280 (337)
Q Consensus 277 ~~~~ 280 (337)
++.+
T Consensus 439 ~~~~ 442 (496)
T PRK03893 439 SFSL 442 (496)
T ss_pred HHHH
Confidence 5433
No 20
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.78 E-value=3.2e-17 Score=144.19 Aligned_cols=158 Identities=15% Similarity=0.067 Sum_probs=100.8
Q ss_pred cchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc--CChhhHHH-HhHHHHHHHHHHHHHHHHhcCC
Q psy11545 118 NPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM--GRRSLTFI-SSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 118 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
+....|.|.++++ .|++... +....+..++.+++.+++|+++||+ +||....+ ...+..++.+.+.. ..
T Consensus 270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~--~~---- 343 (452)
T PRK11273 270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL--NP---- 343 (452)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH--hc----
Confidence 3456688888876 4777444 6667778888899999999999999 45543222 22222222222111 11
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHH-HHHHhHHHHHhcCCcc
Q psy11545 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFL-TVKSYNMFQTHLTKEG 271 (337)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 271 (337)
..+.....+.....+. ...+.......+..|.+|++.||+++|+.+...++|+.+ +|.+.+.+.+..||+.
T Consensus 344 -------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~ 415 (452)
T PRK11273 344 -------AGNPTVDMACMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 415 (452)
T ss_pred -------ccChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchH
Confidence 0112222222222222 111212222356779999999999999999999888765 7999999999999999
Q ss_pred chHHHHHHHHHHHHHhhe
Q psy11545 272 TFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~ 289 (337)
.|.+.+++++++.+....
T Consensus 416 ~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 416 GFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888877777665443
No 21
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.77 E-value=5.2e-17 Score=142.11 Aligned_cols=223 Identities=13% Similarity=0.113 Sum_probs=124.3
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
.|||++|++.++++++.+.+...+||+|++..+ + . + +..++.
T Consensus 195 ~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~--------~------------------------~----~--~~~~~~ 236 (432)
T PRK10406 195 WGWRIPFALGAVLAVVALWLRRQLDETSQQETR--------A------------------------L----K--EAGSLK 236 (432)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh--------h------------------------h----c--ccccHH
Confidence 489999999999888776666668998753100 0 0 0 001233
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
+.+++++.+. ........... ..+.+..|.|.++.+ .|++... .....+..+...++.++.|+++||+|||+.+
T Consensus 237 ~l~~~~~~~~---~~~~~~~~~~~-~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~ 312 (432)
T PRK10406 237 GLWRNRRAFI---MVLGFTAAGSL-CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM 312 (432)
T ss_pred HHHhhHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4454443222 11111111111 134456677777654 5777444 5566666677788888999999999999987
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
.++.++.++....+...... .......+..........+. ..+..+.+.+|.+|++.|++++|+.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 313 LCFGSLAALFTVPILSALQN-----------VSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 76655443333222111111 01122211111111111111 1234467889999999999999999987
Q ss_pred HHH-HHHHHHHHhHHHHHhcCCcc-chHHHHHHHHHHHHHhh
Q psy11545 249 CHF-FIFLTVKSYNMFQTHLTKEG-TFLMYGCISLLGTIFFY 288 (337)
Q Consensus 249 ~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 288 (337)
+++ ++...|.+.+.+ +..|+.. .++..++..+++.+..+
T Consensus 381 g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 381 ANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 765 344567766744 5556443 44444555555544433
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.77 E-value=3.6e-17 Score=142.21 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=105.8
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
+....+.|.++++.|++... +.......++.+++.++.|+++||+|||+.+..+.+...++.+.+.. .
T Consensus 237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~-------- 305 (406)
T PRK11551 237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA---A-------- 305 (406)
T ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---c--------
Confidence 34555678888888887544 77778888999999999999999999999887766555554443333 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCc-cchHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKE-GTFLM 275 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~ 275 (337)
.+.+...+. .+..+....+..+..+++..|.+|++.|+++.|+.+....++..++|.+.|.+.+..+.. ..+..
T Consensus 306 ----~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~ 380 (406)
T PRK11551 306 ----PSFAGMLLA-GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGA 380 (406)
T ss_pred ----CcHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHH
Confidence 122222222 222222222334556788999999999999999999999999999999999998865443 33444
Q ss_pred HHHHHHHHHHH
Q psy11545 276 YGCISLLGTIF 286 (337)
Q Consensus 276 ~~~~~~~~~~~ 286 (337)
...+.+++.+.
T Consensus 381 ~~~~~~~~~~~ 391 (406)
T PRK11551 381 SIPVILVAALA 391 (406)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 23
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.77 E-value=1.1e-16 Score=139.03 Aligned_cols=139 Identities=15% Similarity=0.026 Sum_probs=96.4
Q ss_pred hhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 120 VTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 120 ~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
...+.|.++. +.|++... +.......++.+++.++.++++||+|||+.+..+.++..+..+.... .
T Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~--------- 324 (405)
T TIGR00891 257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA---I--------- 324 (405)
T ss_pred hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH---h---------
Confidence 3345565554 45777544 67778888999999999999999999999888776654332222211 1
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-Cccch
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTF 273 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 273 (337)
..+.+...+...+. .....+..+....++.|.+|++.|++++|+.+....+++.++|.+.|.+.+..| |...+
T Consensus 325 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 325 --GANVAVLGLGLFFQ-QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred --CCchHHHHHHHHHH-HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 01222222222222 233333345556888999999999999999999999999999999999999988 65433
No 24
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.76 E-value=2.5e-17 Score=144.32 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=106.3
Q ss_pred cchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 118 NPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 118 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
+....|.|.++++ .|++... ++...+..++++++.+++|+++||+++++....+.....+..+........ .
T Consensus 268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 341 (438)
T TIGR00712 268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN-P----- 341 (438)
T ss_pred HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc-C-----
Confidence 3456678888876 4776444 677778888999999999999999965432223332222211111111111 0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHH-HHHHHHhHHHHHhcCCccchH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFI-FLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 274 (337)
..+.+.........+. ...+..........|.+|++.|+++.|+.+...++++ +++|.+.|.+.+..|+...+.
T Consensus 342 ----~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~ 416 (438)
T TIGR00712 342 ----AGNPLVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 416 (438)
T ss_pred ----CCchHHHHHHHHHHHH-HHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHH
Confidence 0112222222222221 1122112213457799999999999999999888875 689999999999999998888
Q ss_pred HHHHHHHHHHHHhheeccCCC
Q psy11545 275 MYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+.+++.+++.+..++++||.|
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 417 VMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 888887777777777777765
No 25
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.76 E-value=1.6e-16 Score=139.02 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=97.1
Q ss_pred hhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 120 VTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 120 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
+..+.|.++.+.|.+... ........++.+++.++.+++.||+|||+.+..+.++.++..+.+.. .
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~---~---------- 316 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR---I---------- 316 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---H----------
Confidence 455677777777776444 66667788889999999999999999999888777666554433322 1
Q ss_pred CcchhHHHHHHHHHHHHH-HhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Q psy11545 199 PAFVSYLPVLMLMTFTAA-STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 271 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (337)
....... .....++.+ ...+..+....++.|.+|++.||+++|+.+....+++.++|.+.+++.+..|+..
T Consensus 317 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 317 -PQDNYLL-LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred -ccccHHH-HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 0111221 122222222 2223334445778899999999999999999999999999999999999887654
No 26
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.75 E-value=6.8e-17 Score=140.31 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=96.8
Q ss_pred ccchhccchHHHhhc--CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH-HHHhHHHHHHHHHHHHHHHHhcCC
Q psy11545 117 VNPVTFYAVNIFKDA--GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT-FISSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
...+..|.|.++++. +++... ........++..++.++.|+++||++||+.. ....++..++. .+.. ..
T Consensus 258 ~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~--~~---- 330 (412)
T TIGR02332 258 LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLAS--AT---- 330 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHH--hc----
Confidence 555778899999875 444333 6777888899999999999999999977753 33333333322 2221 11
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-Ccc
Q psy11545 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEG 271 (337)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~ 271 (337)
......+........+.. ...+..+....|.+|++.|++++|+.+...++|++++|.+.+.+.+..| |..
T Consensus 331 --------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~ 401 (412)
T TIGR02332 331 --------DHNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNS 401 (412)
T ss_pred --------CCHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCch
Confidence 111222211222211111 1123334566788999999999999999999999999999999999875 777
Q ss_pred chHHHHHH
Q psy11545 272 TFLMYGCI 279 (337)
Q Consensus 272 ~~~~~~~~ 279 (337)
.+.+.+++
T Consensus 402 ~~~~~~~~ 409 (412)
T TIGR02332 402 GLWFVAAL 409 (412)
T ss_pred hHHHHHHH
Confidence 77665553
No 27
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.75 E-value=8.2e-17 Score=139.36 Aligned_cols=246 Identities=14% Similarity=0.191 Sum_probs=140.1
Q ss_pred hhHHHHHHHhhHHHHHHHHHhc-ccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
.+||+.|++.+++.++..+..+ ++||+|+.. +...++.++... +.... +.+.+++++....+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~ 208 (399)
T TIGR00893 145 FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVV---------GGLLA-----EQQGKGPSTPKKYQI 208 (399)
T ss_pred CCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcc---------hhhcc-----ccccccccCCCccch
Confidence 3899999999988877666555 477776311 000111000000 00000 000000111223345
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
++.+++++.+.......... . .......+.|.++.+ .+.+... +.......++.+++.++.++++||++||+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 283 (399)
T TIGR00893 209 KELLKDRRVWGLALGQFLVN----I-GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGK 283 (399)
T ss_pred HHHhcCHHHHHHHHHHHHHH----h-HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55666654433222211111 1 244455666766654 5776444 677788888999999999999999999962
Q ss_pred HHH-HhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHH
Q psy11545 168 TFI-SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 246 (337)
Q Consensus 168 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 246 (337)
... ......++.+.......... .............. .+...+..+..+.+..|.+|++.|+++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (399)
T TIGR00893 284 SLVFARKTAIIAGLVLSLLMFATN---------YVNIPYAALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLIN 353 (399)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhc---------cchhHHHHHHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHH
Confidence 111 11111111111111111100 01122222222222 22333356677899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhcC-CccchHHHHHHHHHHHHHh
Q psy11545 247 CACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 287 (337)
....+|..++|.+.+.+.+..| +...+.+.+++.+++.+..
T Consensus 354 ~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 354 SLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888 8888888777777666544
No 28
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.75 E-value=1.1e-16 Score=141.33 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=105.9
Q ss_pred ccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|.++++ .|++... ........++..++.+++|+++||+|||+.+.....+..++...+.+ ..
T Consensus 274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~--~~------ 345 (467)
T PRK09556 274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY--QH------ 345 (467)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH--Hh------
Confidence 34466788877754 6887544 67777788899999999999999999998776554433332222221 11
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHH-HHHHHHHHhHHHHH--------
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHF-FIFLTVKSYNMFQT-------- 265 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------- 265 (337)
..+.....+..+..+. ...+..........|.+|++.||++.|+.+...++ |++++|.+.|.+.+
T Consensus 346 -----~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 346 -----ATSEYMYLASLFALGF-LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred -----cCcHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 0122222222222222 22222222235667999999999999999999997 77999999999999
Q ss_pred ----hcCCccchHHHHHHHHHHHHHhh
Q psy11545 266 ----HLTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 266 ----~~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
..||+..|.+.+++.+++.+..+
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHH
Confidence 56788888888777777665543
No 29
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.75 E-value=1.9e-16 Score=136.17 Aligned_cols=149 Identities=14% Similarity=-0.021 Sum_probs=107.7
Q ss_pred ccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11545 122 FYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPA 200 (337)
Q Consensus 122 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
.+.+.+.++.+.+... ........++..++.++.|+++||+|||+.+..+.++.+++.+.+.... .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------~ 292 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-------------M 292 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-------------c
Confidence 3445556667776444 6777888889999999999999999999998888877777666554410 0
Q ss_pred chhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHH
Q psy11545 201 FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCIS 280 (337)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 280 (337)
.............+...+ ...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|.+.+++.
T Consensus 293 ~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 293 LNDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred chhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 111112122222222222 2233445788899999999999999999999999999999999999999998888877766
Q ss_pred HHHH
Q psy11545 281 LLGT 284 (337)
Q Consensus 281 ~~~~ 284 (337)
+++.
T Consensus 372 ~~~~ 375 (377)
T TIGR00890 372 LTSL 375 (377)
T ss_pred HHhc
Confidence 6543
No 30
>PRK15075 citrate-proton symporter; Provisional
Probab=99.74 E-value=1.9e-16 Score=138.68 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=92.5
Q ss_pred ccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
.+....|.|.++++ .|++... .+...+..++.+++.+++|+++||+|||+.+..+..+..+....... ... ..
T Consensus 254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~-~~--- 328 (434)
T PRK15075 254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS-WLV-AA--- 328 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHH-cC---
Confidence 55577788888876 5887554 66677788888999999999999999999887765443322211111 111 00
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHH-HHHHHHHHhHHHHHhcCCc
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHF-FIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 270 (337)
...........+...+.+ ...+..+.+..|.+|++.|+++.++.+..... ++.++|.+.+++.+..|+.
T Consensus 329 ------~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 329 ------PSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred ------CchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 111111111122222222 22334457889999999999999997665554 5888999999999988864
No 31
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.74 E-value=1.4e-16 Score=139.02 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
+....+..++..++.+++|+++||+|||+.+..+.++.++..+++.+ ..+.+..+....+.+...
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~---------------~~~~~~~~~~~~l~g~~~ 329 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF---------------ATGPLEVSILKLLHAFEV 329 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh---------------cccHHHHHHHHHHHHHHH
Confidence 56667777888899999999999999999988887777776665554 122333222222222222
Q ss_pred hccccchhhhhhcccCCccchhhhhhH-HHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGL-TTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
... .+....++.|.+|++.|++..+. .++...+|.++++.+.|++.+..||+..|.+.+++.++..++.+...++
T Consensus 330 ~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 330 PFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 211 23335778899999999988766 5677889999999999999999999999998888877766655554444
No 32
>PRK03545 putative arabinose transporter; Provisional
Probab=99.74 E-value=4.5e-16 Score=134.52 Aligned_cols=220 Identities=14% Similarity=0.089 Sum_probs=135.3
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHhc-ccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHH
Q psy11545 9 AFLSWDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 87 (337)
Q Consensus 9 ~~~~Wr~~f~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
...|||+.|++.++++++..+..+ ++||.|+ + +.+ ...
T Consensus 158 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~~~------------------------------------~~~ 196 (390)
T PRK03545 158 QYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----E-HSG------------------------------------SLK 196 (390)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-Ccc------------------------------------hHH
Confidence 445999999999988877665544 4777642 0 000 001
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
+..+.++++..+.......+.... ......+.+.++.+ .|.+.+. +......+++.+++.++.++++||++||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 271 (390)
T PRK03545 197 SLPLLFRRPALVSLYLLTVVVVTA-----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG 271 (390)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 223456666544322222211111 11123344444554 5777554 6777778889999999999999999988
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHH
Q psy11545 166 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 245 (337)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 245 (337)
... .+..+..++...+.. .. .+.+...+...+.+.+. ....+.....+.|..| +.|+.++|+.
T Consensus 272 ~~~-~~~~~~~~~~~~l~~--~~------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~ 334 (390)
T PRK03545 272 FLL-IAIALLLVCLLLLLP--AA------------NSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALF 334 (390)
T ss_pred HHH-HHHHHHHHHHHHHHH--Hh------------chHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHH
Confidence 654 333333333322221 01 12222223233333322 2333344566777776 5789999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheec
Q psy11545 246 TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYL 291 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (337)
+....+|..+++.+.|.+.+..|++..+...+++.+++.++.+...
T Consensus 335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999988888888777655443
No 33
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.74 E-value=1.8e-16 Score=137.63 Aligned_cols=180 Identities=18% Similarity=0.220 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHH
Q psy11545 101 PFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 179 (337)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 179 (337)
+.+...++.+.........+.+..|.+.++.+++.+. ++..+...++..++.++.|+++||+|||+.+..+.++..++.
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3444444444455555666777778888888888655 888899999999999999999999999999999988888888
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q psy11545 180 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 259 (337)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 259 (337)
+...+ .++...+....++.+....+..+....++.|++|+++|+++.++.+....+|..+++.+
T Consensus 88 ~~~~~----------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 88 TATMF----------------ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHH----------------hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 12233333333343433334456656789999999999999999999999999999999
Q ss_pred hHHHHH------hcCCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 260 YNMFQT------HLTKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 260 ~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
.+.+.+ ..||++.|.+.++..++..++.++++||++.
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 988874 3699999999888877766666777888764
No 34
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.73 E-value=4e-16 Score=134.27 Aligned_cols=149 Identities=10% Similarity=0.136 Sum_probs=100.7
Q ss_pred ccchHHH-hhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11545 122 FYAVNIF-KDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 199 (337)
Q Consensus 122 ~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
.+.|.++ ++.|.+... +...........++.++.|++.||+|||+.+..+.++..+....+.. .
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~----------- 285 (375)
T TIGR00899 220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA---D----------- 285 (375)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---H-----------
Confidence 3445554 455776444 55555556667778899999999999999887776554444333222 1
Q ss_pred cchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHH
Q psy11545 200 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCI 279 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 279 (337)
.+.+.......+.+.+.+. ..+....+..|..|++ ++++.++.+...++|..++|.+.+.+.+..|++..+.+.+++
T Consensus 286 -~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~ 362 (375)
T TIGR00899 286 -NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVM 362 (375)
T ss_pred -HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 1222222222222222222 2345567788888864 679999999999999999999999999999999888888888
Q ss_pred HHHHHHHh
Q psy11545 280 SLLGTIFF 287 (337)
Q Consensus 280 ~~~~~~~~ 287 (337)
.+++.++.
T Consensus 363 ~~~~~~~~ 370 (375)
T TIGR00899 363 LIVALFCL 370 (375)
T ss_pred HHHHHHHH
Confidence 77776654
No 35
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.72 E-value=8.8e-17 Score=132.30 Aligned_cols=181 Identities=10% Similarity=0.075 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHH
Q psy11545 99 LKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGV 177 (337)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 177 (337)
+...++.+++........-..+..-.|.+.++.+++..+ +.+.+...+...++-++.|.++||.+.|+.+..+++++++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 334444444444433333566778889999998898666 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHH
Q psy11545 178 SMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 257 (337)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 257 (337)
..+++++ ..+.....++..+-+.+.+.++. .+...+..++|+++||+..++-++..++|+.+.+
T Consensus 107 ~nil~Gf---------------s~s~~~~~~l~~lng~fQg~Gwp-p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 107 VNILFGF---------------SPSLFLFAVLWVLNGWFQGMGWP-PCARTITHWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHhh---------------hhHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHcCccccCceEEEehhhhhcccchHH
Confidence 9999998 22333344444444555556654 4478889999999999999999999999999999
Q ss_pred HHh--HHHHHhcCCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 258 KSY--NMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 258 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
.+. +.+..+.+|+..|++.++++++..++.++..+++.
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999 88888889999999999999988888777766543
No 36
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.72 E-value=4.1e-16 Score=135.52 Aligned_cols=189 Identities=12% Similarity=0.203 Sum_probs=124.9
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCc--------hh-HHHHHHHHHHHHHHHHHHHHHhh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHV--------NN-NLAAVIMGIVRLIFTIASCIMMK 160 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~-~~~~~~~~~~~~~~~~~~g~l~d 160 (337)
.+.++++.++..++..++.... ......+.+.++++.|.+. +. +....+..+..+++.++.++++|
T Consensus 202 ~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~d 276 (418)
T TIGR00889 202 FILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLK 276 (418)
T ss_pred HHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777665433333332221 1122344455566655432 22 66667777888899999999999
Q ss_pred hcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchh-HHHHHHHHHHHHHHhccccchhhhhhcccCCccchh
Q psy11545 161 KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVS-YLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRG 239 (337)
Q Consensus 161 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 239 (337)
|+|||+++..+.++.+++...+... .. .... +..++...+.+.+.+ ...+....++.|.+|++.|+
T Consensus 277 r~g~r~~l~~~~~~~~v~~~l~~~~-~~-----------~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g 343 (418)
T TIGR00889 277 RFGIKKVMLLSLVAWALRFGFFAYG-DP-----------EYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRA 343 (418)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHc-Cc-----------chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHH
Confidence 9999999999888877766555441 00 0011 122222233333332 22344467889999999999
Q ss_pred hhhhHHH-HHHHHHHHHHHHHhHHHHHhc------CCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 240 IVGGLTT-CACHFFIFLTVKSYNMFQTHL------TKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
++.|+.+ ....+|.+++|.+.|.+.+.. ||+..|.+.+++.+++.++.++++||+++
T Consensus 344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999997 567899999999999999874 57878888888888877777777887654
No 37
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.71 E-value=1.4e-15 Score=134.75 Aligned_cols=233 Identities=13% Similarity=0.090 Sum_probs=139.7
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
..|||..|++.++..++..+..+++||+++.. +.++ .. ++....++
T Consensus 170 ~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~--------------~~----------------~~~~~~~l 215 (491)
T PRK11010 170 YLGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPK--------------TL----------------EQAVVAPL 215 (491)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----cccc--------------ch----------------hhhHHHHH
Confidence 34899999999988877766666688875310 0000 00 00011234
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHH-HhhcCCCchh-HHHH-HHHHHHHHHHHHHHHHHhhhcCChh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI-FKDAGAHVNN-NLAA-VIMGIVRLIFTIASCIMMKKMGRRS 166 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~~grr~ 166 (337)
.+.+++++.+......+..... ......+.+.+ .++.|++... +... ....++.+++.+++|+++||+|+|+
T Consensus 216 ~~~~~~~~~~~~ll~~~l~~~~-----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~ 290 (491)
T PRK11010 216 RDFFGRNNAWLILLLIVLYKLG-----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR 290 (491)
T ss_pred HHHHcCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455555444322222211111 11122233444 4557887555 5554 4556788999999999999999998
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHH
Q psy11545 167 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 246 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 246 (337)
.+.++.++.++..+.+...... ..+.+.......+.....+.+. +..+++..+..+++.+++..++.+
T Consensus 291 ~l~i~~~l~~l~~l~~~~l~~~-----------~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~ 358 (491)
T PRK11010 291 ALMIFGILQGVSNAGYWLLSIT-----------DKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLS 358 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 8776665555544333221111 0111222222222222222222 233678889999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 247 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
....+|..+++.+.|.+.+..||...|.+.+++++.+.+.... .+++
T Consensus 359 s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 359 ALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 9999999999999999999999988888888887777665443 3443
No 38
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.71 E-value=7.6e-16 Score=133.28 Aligned_cols=218 Identities=14% Similarity=0.138 Sum_probs=127.6
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
.+||+.|++.+++.++..+....+||+|++..++++ ++....+..
T Consensus 167 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~ 211 (394)
T TIGR00883 167 WGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-----------------------------------HKKKRGPIR 211 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-----------------------------------cccccCCHH
Confidence 489999999888777666665567888743211000 000011223
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHH-hhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIF-KDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
+.+++++. .............. .......+.|.++ ++.|.+... +.......++..++.++.++++||+|||+.+
T Consensus 212 ~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 212 ETLTKHRK--PFLLGLGLVIATTT-TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHhchH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 33444321 12222222222111 1344556677777 445776444 6677778888999999999999999999987
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHH-H
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT-C 247 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~ 247 (337)
.....+..+..+........ ..+.+.........+.+.+. ..+...+++.|.+|++.|+++.++.. .
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 356 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALLD-----------SGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNL 356 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----------CCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHh
Confidence 75554443333211111111 01222222323333333333 33455789999999999999999854 4
Q ss_pred HHHHHHHHHHHHhHHHHHhcC-CccchHHHHH
Q psy11545 248 ACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGC 278 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 278 (337)
...+|..++|.+.+.+.+..| |+..++..++
T Consensus 357 ~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 357 AGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 556788899999999999888 6655444443
No 39
>TIGR00895 2A0115 benzoate transport.
Probab=99.71 E-value=4.2e-16 Score=135.11 Aligned_cols=228 Identities=14% Similarity=0.195 Sum_probs=129.1
Q ss_pred hhHHHHHHHhhHHHHHHHH-HhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSII-AGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~-~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
.|||+.|++.++..++..+ ...++||+|++...+ +.++..+..++........+++ +. ++++++.....+.
T Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~ 239 (398)
T TIGR00895 168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-----AL--PEQKATQGTKRSV 239 (398)
T ss_pred ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-----cc--cccccccchhhHH
Confidence 4899999998766655544 445689999876554 3333333333322111100000 00 0000011111222
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
.+.+++++..+..........+.. ........+.|.+..+.+.+.+. +.......++.+++.++.++++||+|||+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (398)
T TIGR00895 240 FKALFQGKTARITVLLWLLYFMLL-VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA 318 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 232333322222222222222222 22445566778777777887544 7777888899999999999999999999544
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
... .+.++...++.. .. .+....+....+.+.+.+. ..+..++++.|.+|++.|+++.|+.+..
T Consensus 319 ~~~-~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 382 (398)
T TIGR00895 319 LLL-LLGAVFAVLVGS--TL------------FSPTLLLLLGAIAGFFVNG-GQSGLYALMALFYPTAIRATGVGWAIGI 382 (398)
T ss_pred HHH-HHHHHHHHHHHH--Hh------------hCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 333 333332222222 11 1222333333333333333 3455578999999999999999999999
Q ss_pred HHHHHHHHHHHhHHH
Q psy11545 249 CHFFIFLTVKSYNMF 263 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~ 263 (337)
..+|..++|.+.|.+
T Consensus 383 ~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 383 GRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhHHhc
Confidence 999999999988864
No 40
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.71 E-value=1e-15 Score=132.35 Aligned_cols=156 Identities=8% Similarity=0.017 Sum_probs=101.4
Q ss_pred hhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 120 VTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 120 ~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
...+.|.+++ +.+++... +.......++.+++.++.|+++||+|||+.+..+.....+....+.. .
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~--------- 302 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---A--------- 302 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---H---------
Confidence 3345666654 45776444 55555666777888999999999999999877665544443322211 1
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (337)
.+.+..+....+.....+.. .+....+..|.+|+ .|+++.++.+...++|..+++.+.|.+.+..||+..+.+.+
T Consensus 303 ---~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~ 377 (393)
T PRK15011 303 ---HSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFAL 377 (393)
T ss_pred ---hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 12222222222222222221 12334667888885 58999999999999999999999999999889988888777
Q ss_pred HHHHHHHHHhheeccC
Q psy11545 278 CISLLGTIFFYVYLPE 293 (337)
Q Consensus 278 ~~~~~~~~~~~~~~~e 293 (337)
++.+++.+.. ++.||
T Consensus 378 ~~~~~~~~~~-~~~~~ 392 (393)
T PRK15011 378 VMIIATLFCL-LRIKD 392 (393)
T ss_pred HHHHHHHHHH-HhhcC
Confidence 7777666553 44454
No 41
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.70 E-value=3.7e-16 Score=136.77 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=124.9
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
......+.|.+.++.|++..+ ++......++..++.++.|+++||+|||+++.++.++.+++.+++..
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 107 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF----------- 107 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH-----------
Confidence 445667788989999998555 78888899999999999999999999999999998888888776665
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+.+...+...+.+.+.+.. .+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..||++.|.+
T Consensus 108 ----~~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 108 ----SSSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred ----HhHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 112222222222333333333 355578899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhheeccCC
Q psy11545 276 YGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~ 294 (337)
.++++++..++..+++||+
T Consensus 183 ~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 8877665554444455654
No 42
>TIGR00895 2A0115 benzoate transport.
Probab=99.70 E-value=9.2e-16 Score=132.98 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=125.1
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
......+.|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+++..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----------- 101 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL----------- 101 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445667788888888887554 77888888999999999999999999999999988887777766555
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+.+..++ .....+.......+...+++.|.+|++.|+++.++......+|..+++.+.+.+.+..||+..+++
T Consensus 102 ----~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 102 ----ATNVTQLLI-LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred ----ccchHHHHH-HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 112222333 233333333334556678999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhheeccCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~ 295 (337)
.++++++..++.+.++||+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCC
Confidence 87666666665566677764
No 43
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.70 E-value=9.4e-16 Score=127.65 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=141.4
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
-+...-..|.+-+|.+.+... ++..+.++++..+++++...+.||+.||++++..+.++.++.++.++
T Consensus 29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al----------- 97 (394)
T COG2814 29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL----------- 97 (394)
T ss_pred HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 455677789999999998665 99999999999999999999999999999999999999999999888
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
.+++..+....+..+.....+.++..++..++.|+++|+.++++......++..+|.++..++-+.+|||.+|+.
T Consensus 98 -----Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 98 -----APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 345555555555555555566778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhheecc
Q psy11545 276 YGCISLLGTIFFYVYLP 292 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ 292 (337)
.++++++..+..+..+|
T Consensus 173 ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 173 IAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999988888888
No 44
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.69 E-value=1.9e-15 Score=130.53 Aligned_cols=165 Identities=9% Similarity=0.017 Sum_probs=116.4
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
......+.|.++.+.|.+... +....+.+++.+++.++.+++.||++||+.+..+..+.+++.+.+.. .
T Consensus 221 ~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~---~------- 290 (393)
T PRK09705 221 YASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW---L------- 290 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH---c-------
Confidence 445666778888888887554 77788899999999999999999999999888877666665544332 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccC-CccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-Cccch
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTF 273 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 273 (337)
...... . ...+.+.+.+ ...+.......+.+ |++.|++..|+.+....+++.++|.+.+++.+..| +...+
T Consensus 291 ----~~~~~~-~-~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~ 363 (393)
T PRK09705 291 ----PLQLPV-L-WAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDW 363 (393)
T ss_pred ----cchHHH-H-HHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 011111 1 1122222222 22344445555666 46789999999999999999999999999999887 55566
Q ss_pred HHHHHHHHHHHHHhheeccCCCCCC
Q psy11545 274 LMYGCISLLGTIFFYVYLPETKNKT 298 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~e~~~~~ 298 (337)
.+.++++++..+..+.+.||++++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 364 AFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHhccccccch
Confidence 6666666666666677788887654
No 45
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.69 E-value=3.1e-15 Score=129.83 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=109.5
Q ss_pred hccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11545 121 TFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPA 200 (337)
Q Consensus 121 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
..+.+.++.+.+.+ +.........++.+++.++.+++.||+|||+.+..+..+.+++.+.+.. .
T Consensus 236 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~------------ 299 (399)
T PRK05122 236 ATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL---A------------ 299 (399)
T ss_pred HHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---h------------
Confidence 34455555665553 3345556677888889999999999999999888877776666655544 1
Q ss_pred chhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHH
Q psy11545 201 FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCIS 280 (337)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 280 (337)
.+.+..++...+.+.+.+. ..+.......|..|++.|+++.++.+....+|..+++.+.+.+.+..|++..+++.++++
T Consensus 300 ~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 378 (399)
T PRK05122 300 PSPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAA 378 (399)
T ss_pred ccHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 1223333333333333332 233434566788999999999999999999999999999999999999998888888877
Q ss_pred HHHHHHhheeccCC
Q psy11545 281 LLGTIFFYVYLPET 294 (337)
Q Consensus 281 ~~~~~~~~~~~~e~ 294 (337)
+++.++.+. .++.
T Consensus 379 ~~~~~~~~~-~~~~ 391 (399)
T PRK05122 379 LLGLALTWL-LYRR 391 (399)
T ss_pred HHHHHHHHH-hccc
Confidence 777655443 4443
No 46
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.69 E-value=1.8e-15 Score=131.67 Aligned_cols=136 Identities=9% Similarity=0.057 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHh
Q psy11545 139 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAST 218 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (337)
....+.+++.+++.+..|+++||+|||+.+..+..+..++.+.... . .+.+...+...+.+.+.+
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~g~~~~ 326 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF---V------------QTPLQLGILRFLLGAADG 326 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH---h------------ccHHHHHHHHHHHHhhhH
Confidence 3344556777888889999999999999988877766655544433 1 122222222223333222
Q ss_pred ccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhhee
Q psy11545 219 IGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 290 (337)
Q Consensus 219 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (337)
...+...+.+.+..|++.||+.+++.+....+|..++|.+.+.+.+..||+..|.+.+++.+++.++.++.
T Consensus 327 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 327 -ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred -hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 23444456777888999999999999999999999999999999999999999999888888877665443
No 47
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.68 E-value=2.2e-15 Score=137.25 Aligned_cols=160 Identities=11% Similarity=0.006 Sum_probs=117.3
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
..+....|.+..+.+++... ++..+...++.+++.+++|+++||+|||+.+++++++.+++.++..+
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af------------ 251 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF------------ 251 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH------------
Confidence 34555677777888887544 77888889999999999999999999999999988888877766655
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc---------
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL--------- 267 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 267 (337)
..+.+..++ ..++.+....+..+...+++.|.+|++.|+..+++..++..+|.++++.+...+....
T Consensus 252 ---a~s~~~llv-~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 252 ---VQGYGFFLF-CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred ---HhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 112233333 3333333333345677899999999999999999999999999999988777666543
Q ss_pred ----CCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 268 ----TKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 268 ----g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
+|++.+++.++.+++. ++..+++||+
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~-ll~~~~lPES 357 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFA-IGALTFMPES 357 (742)
T ss_pred cccccHHHHHHHHHHHHHHH-HHHHHHcCCC
Confidence 4666666655554444 3446678997
No 48
>PRK03545 putative arabinose transporter; Provisional
Probab=99.68 E-value=1.6e-15 Score=131.19 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=123.8
Q ss_pred hhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 120 VTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 120 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
.....|.+.++.|.+... ++......++..++.++.|.++||+|||+++..+..+.+++.+.+.+
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------------- 93 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL-------------- 93 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH--------------
Confidence 344568888888888555 78888888888999999999999999999999998888888777666
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 278 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (337)
.++...+....+..+.......+...+++.|.+|+++|+.++|+......+|..++|.+.+.+.+..||++.|++.++
T Consensus 94 --~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 94 --AWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred --hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 123333333333333333333455578889999999999999999999999999999999999998999999999888
Q ss_pred HHHHHHHHhheeccCC
Q psy11545 279 ISLLGTIFFYVYLPET 294 (337)
Q Consensus 279 ~~~~~~~~~~~~~~e~ 294 (337)
++++..+..+...||.
T Consensus 172 ~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 172 GALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8777665555556654
No 49
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.67 E-value=3.1e-16 Score=137.82 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=101.2
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc--CChhhHHHHh--HHHHHHHHHHHHHHHHhcC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM--GRRSLTFISS--IGCGVSMTGLGLYIFATKD 191 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~ 191 (337)
......+.+.+.++.|++... +....+.+++.+++.++.++++||. ++|+...++. +..+++.+.+.. .
T Consensus 257 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~--- 330 (455)
T TIGR00892 257 FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---A--- 330 (455)
T ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---h---
Confidence 334455667777777887444 6777788888999999999999973 3343333322 222222222221 1
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc-CCc
Q psy11545 192 FWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL-TKE 270 (337)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 270 (337)
.+.+..++...+.+.+.+ ...+...+++.|.+|++.++++.|+.+....+|.+++|.+.|.+.+.. +|+
T Consensus 331 ---------~~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~ 400 (455)
T TIGR00892 331 ---------GDYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYK 400 (455)
T ss_pred ---------chHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcc
Confidence 122222333333333322 334455788889999999999999999999999999999999999877 488
Q ss_pred cchHHHHHHHHHHHH
Q psy11545 271 GTFLMYGCISLLGTI 285 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~ 285 (337)
..|++.+++.+++.+
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 888887776666554
No 50
>KOG2533|consensus
Probab=99.67 E-value=3.2e-16 Score=136.05 Aligned_cols=225 Identities=13% Similarity=0.121 Sum_probs=127.2
Q ss_pred hHHHHHHHhhHHHHHHHHHhcc-cCCChH--HHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCL-MPESPS--WLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 88 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~-~pesp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
||||.|++.++++++..+..++ +|+.|. |..++++. +-..++.++.+. ... .++.+...
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek---~~~~~~~~~~~~--------------~~~-~~~~~~~~ 265 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK---ELVVERLRESPS--------------GGI-ENKFKWKG 265 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH---HHHHHHHHhccC--------------CCc-ccccCHHH
Confidence 9999999999999998877765 999995 22111111 101111111110 000 11146678
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCc-hhHHHHHHHHHHHHHHHHHHHHHhhh----c
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHV-NNNLAAVIMGIVRLIFTIASCIMMKK----M 162 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~ 162 (337)
+.+.++++..|...+..++... ..+.+.+|.|.++++ .+++. +...+.....++++++.+++|+++|| .
T Consensus 266 ~~~a~~dp~vw~~~l~~~~~~l-----v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~ 340 (495)
T KOG2533|consen 266 FKEALKDPGVWPFSLCYFFLKL-----VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF 340 (495)
T ss_pred HHHHHhchhHHHHHHHHHHHhh-----ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence 8888999866543333333332 267789999999998 45763 44888899999999999999999999 5
Q ss_pred CChhhHHHHhHHHHHHH-HHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccch-hh
Q psy11545 163 GRRSLTFISSIGCGVSM-TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVR-GI 240 (337)
Q Consensus 163 grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r-~~ 240 (337)
.+|........+..+.. +.+.. .............+........++.....++....+.| -+
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~ 404 (495)
T KOG2533|consen 341 ARRLLFIVFLCLYAIIGAISLLA----------------AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALT 404 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----------------hccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence 56665555554444333 32222 11111111111122211222233445556665554444 44
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHH-hcCCccchHH
Q psy11545 241 VGGLTTCACHFFIFLTVKSYNMFQT-HLTKEGTFLM 275 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 275 (337)
..+........++++++.+...... .++|...|..
T Consensus 405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 405 TVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 4455555556666666555443333 3567766633
No 51
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.67 E-value=1.3e-15 Score=131.87 Aligned_cols=163 Identities=11% Similarity=0.139 Sum_probs=127.0
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
..+....|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------------ 78 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF------------ 78 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH------------
Confidence 34555667777888887555 88889999999999999999999999999999988888877777665
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 276 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (337)
..+.+..++...+.+.+ .....+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+|++.|.+.
T Consensus 79 ---~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 79 ---AGAYVSLYILRVLLGAA-EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred ---HcCHHHHHHHHHHHHHH-HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 12233333333333333 33345666789999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhheeccCCCC
Q psy11545 277 GCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 277 ~~~~~~~~~~~~~~~~e~~~ 296 (337)
+++.++..++.++..||++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHhhheecCCCC
Confidence 88777776665666666543
No 52
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.67 E-value=1.3e-15 Score=134.67 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=89.8
Q ss_pred hhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChh-------hHHHHhHHHHHHHHHHHHHHHHhc
Q psy11545 120 VTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRS-------LTFISSIGCGVSMTGLGLYIFATK 190 (337)
Q Consensus 120 ~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~ 190 (337)
...+.|.++.+ .|++... .....+..++..++.+++|+++||++||+ ...+...+.++..+.+.. .
T Consensus 271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~---~-- 345 (476)
T PLN00028 271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR---A-- 345 (476)
T ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc---c--
Confidence 34456666554 5887544 77788888999999999999999998762 221222222221211111 1
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCc
Q psy11545 191 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (337)
.+....+..+.++..+.... .+..+.+..+..| +.||++.|+.+..+.+|+++++.+.+ ..+..+|.
T Consensus 346 ----------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~ 412 (476)
T PLN00028 346 ----------NSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTE 412 (476)
T ss_pred ----------chHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHh
Confidence 12222222222332222222 2233566677655 68999999998888888888776654 11234577
Q ss_pred cchHHHHHHHHHHHHHhhe
Q psy11545 271 GTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~ 289 (337)
..|.+.+++.+++.++.++
T Consensus 413 ~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 413 TGISLMGVMIIACTLPVAF 431 (476)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 7888888777777665443
No 53
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.67 E-value=2.7e-15 Score=129.57 Aligned_cols=158 Identities=9% Similarity=0.087 Sum_probs=121.9
Q ss_pred hccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11545 121 TFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 199 (337)
Q Consensus 121 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
....|.+.++.|.+... +.......++..++.++.|.++||+|||+.+..+.++.+++.+...+
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~--------------- 104 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF--------------- 104 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH---------------
Confidence 33567778888888555 77778888999999999999999999999999999998887776655
Q ss_pred cchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHH
Q psy11545 200 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCI 279 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 279 (337)
.++...++......+.......+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..||++.|++.+++
T Consensus 105 -~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 105 -ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred -HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1223333333333333333345666788999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHhheeccCC
Q psy11545 280 SLLGTIFFYVYLPET 294 (337)
Q Consensus 280 ~~~~~~~~~~~~~e~ 294 (337)
+++..+......||+
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 666554444445664
No 54
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.67 E-value=1.3e-15 Score=131.07 Aligned_cols=231 Identities=13% Similarity=0.139 Sum_probs=124.6
Q ss_pred hhhHHHHHHHhhHHHHHHHHHh-cccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 88 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
..+||+.|++.+++.++..+.. +++||+|+....+.. ++ .. +++.++. .++.+++....+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~---~~~~~~~---~~~~~~~~~~~~~~ 208 (379)
T TIGR00881 146 LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA-EE----------MP---NEEPDGD---AEKKEEELTKKQIF 208 (379)
T ss_pred cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc-cc----------Cc---ccccccc---cccccccccchHHH
Confidence 3489999999888877665544 457887642110000 00 00 0000000 00000001112223
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChh
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRS 166 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 166 (337)
..+.++++..+...+........ ......+.|.++.+ .|++... +.......++.+++.++.++++||..+|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 209 LQYVLLNKVLWYISLGYVFVYVV-----RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred HHHHHhcchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 44556666444322222222211 33345566666654 4777444 77778888899999999999999864332
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHH
Q psy11545 167 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 246 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 246 (337)
...............+...... . ..+........... +....+..+....+..|.+|++.|+++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 352 (379)
T TIGR00881 284 RGPLAVFFMALIIVSLLVYWLN-P---------AANPLMDLICLFAL-GFLVYGPQMLIGVIASELAPKKAAGTAAGFVG 352 (379)
T ss_pred chHHHHHHHHHHHHHHHHHhcC-c---------chhHHHHHHHHHHH-HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 2222222111111111111111 0 01122222222222 22233333444677899999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCccch
Q psy11545 247 CACHFFIFLTVKSYNMFQTHLTKEGTF 273 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (337)
....+|+.++|.+.|.+.+..||+..|
T Consensus 353 ~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 353 FFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 999999999999999999999987653
No 55
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.66 E-value=8e-15 Score=126.28 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=121.9
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
..+.+++|+.+...+...+... .......+.|.++++.|.+... +.......++.+++.++.+++.||+|+|++
T Consensus 198 ~~~~l~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~ 272 (382)
T TIGR00902 198 FIALLKNPMNLRFLAAVCLIQG-----AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL 272 (382)
T ss_pred HHHHHcChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence 4566777655443332222222 1333445667777888887555 677777888899999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHH-
Q psy11545 168 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT- 246 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~- 246 (337)
+.++.+...+....+.+ . .+.+..+....+.+..++.. .+....++.+. |++.|+++.++.+
T Consensus 273 l~~~~~~~~~~~~~~~~---~------------~~~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~ 335 (382)
T TIGR00902 273 LLISAIACVGRWAIIGA---I------------EAFPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNA 335 (382)
T ss_pred HHHHHHHHHHHHHHHHh---H------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHH
Confidence 99988888888776655 1 22333333334444444433 34456788887 9999999999986
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHH
Q psy11545 247 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 286 (337)
....+|..+++.+.|.+.+..|. ..|+..+++++++.++
T Consensus 336 ~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 336 LAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 45678999999999999999886 5677777777766544
No 56
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.66 E-value=2.7e-15 Score=129.51 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=126.1
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+..+.+++.+.+..
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----------- 89 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL----------- 89 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----------
Confidence 444555667888888887555 88888899999999999999999999999999988888877776655
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
.++...+....+..+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+++
T Consensus 90 -----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 90 -----SNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred -----HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 122222333333333222233455578899999999999999999999999999999999999998999999988
Q ss_pred HHHHHHHHHHHhheeccCCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~~ 296 (337)
.+++.++..+..++..||+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCC
Confidence 888777776666666777643
No 57
>PRK12382 putative transporter; Provisional
Probab=99.66 E-value=1e-14 Score=126.30 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=110.8
Q ss_pred hhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11545 120 VTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 199 (337)
Q Consensus 120 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
...+.+.++.+.+.+ .........+++.+++.++.|++.||+|+|+.+..+..+.+++.+.+.. .
T Consensus 235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~----------- 299 (392)
T PRK12382 235 IGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL---A----------- 299 (392)
T ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH---c-----------
Confidence 344555666666654 2344455667778889999999999999999988887777766655443 1
Q ss_pred cchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHH
Q psy11545 200 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCI 279 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 279 (337)
.+.+..+....+.+.+.+. ..+.......|.+|+++||++.|+.+....+|..++|.+.+.+.+..||+..|.+.+++
T Consensus 300 -~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~ 377 (392)
T PRK12382 300 -PTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS 377 (392)
T ss_pred -ccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 1223333333333333332 23444567788899999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhee
Q psy11545 280 SLLGTIFFYVY 290 (337)
Q Consensus 280 ~~~~~~~~~~~ 290 (337)
.+++.++.+.+
T Consensus 378 ~~~~~~~~~~~ 388 (392)
T PRK12382 378 AVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhh
Confidence 87777665543
No 58
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.66 E-value=1.5e-14 Score=125.10 Aligned_cols=224 Identities=9% Similarity=0.002 Sum_probs=131.5
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
..|||..|++.++..++..+..++++|.++ + +.++ ++....+.
T Consensus 159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~----~-~~~~--------------------------------~~~~~~~~ 201 (390)
T TIGR02718 159 KFGQRPAFLLVACVPLASLVCVLWLKDRAV----A-SPEA--------------------------------PLARRASL 201 (390)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCCCc----C-cccc--------------------------------chhhHHHH
Confidence 449999999999888776666555543321 0 0000 00011234
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHH-HHHHHHHHHHHHHhhhcCChhh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMG-IVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~ 167 (337)
.+.+++|..+.......+.... ......+.+.++.+.|++.+. +......+ ...+++.++.|++.||+|+|+.
T Consensus 202 ~~~l~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~ 276 (390)
T TIGR02718 202 FRFFRRPLAWSLLALALLSAMT-----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT 276 (390)
T ss_pred HHHHcCcCHHHHHHHHHHHHHH-----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5667777654433322222221 122233456667778888555 56555554 4566778999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHH-HHHHhccccchhhhhhcccCCc-cchhhhhhHH
Q psy11545 168 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTF-TAASTIGYLVVPWVMIGEVYPT-KVRGIVGGLT 245 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~ 245 (337)
+..+..+.++..+........ . .......+...... ....+.. .+..+....+..++ +.+++.+++.
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~ 345 (390)
T TIGR02718 277 FILGVGLAGSLALLWFAQAAF--W--------LAPGIAVAWSCSAFGSLITGIT-SVAIYTAFMRFAGDGDQAGTDVTAV 345 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--c--------cCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccchHHHHHHH
Confidence 887766553332222211110 0 00111111111112 1122222 22334555555555 8899999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHH
Q psy11545 246 TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 286 (337)
+....+|..++|.+.|.+.+..|+...|...+++.+++.++
T Consensus 346 ~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 346 QSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888777766665443
No 59
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.65 E-value=1.1e-15 Score=136.06 Aligned_cols=163 Identities=14% Similarity=0.132 Sum_probs=129.9
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.|.+.+. ++......++..++.++.|+++||+|||+.+..+.++.+++.+++..
T Consensus 18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 86 (485)
T TIGR00711 18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV----------- 86 (485)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC-----------
Confidence 455667788888999887555 88889999999999999999999999999999999888888777665
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+...++...+..+.......+....++.|.+|++.|+.+.++......+|..+++.+.+.+.+..+|++.|++
T Consensus 87 -----~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 87 -----APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred -----cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 123333333444444444444566678999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhheeccCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~ 295 (337)
.+.++++..++..+..||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhHHHHHHHHHHHHHcCCcc
Confidence 88777766666556666654
No 60
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.65 E-value=7.3e-15 Score=127.64 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=123.8
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.+.+... .+....+.++..++.++.|+++||+|||+++..+..+.+++.+....
T Consensus 32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------- 100 (413)
T PRK15403 32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF----------- 100 (413)
T ss_pred HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----------
Confidence 444455556677777887555 77778888999999999999999999999999998888887776665
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
.++...+....+..+.......+..+.++.|.+|++.|++++++.+....++..++|.+.+.+.+..||++.|++
T Consensus 101 -----a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 101 -----TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 123333333333333222223345567888999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHhheeccCCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~~ 296 (337)
.+++.++..+..++.+||+++
T Consensus 176 ~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 176 IAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHhCCCCcc
Confidence 888877776655566788653
No 61
>KOG2532|consensus
Probab=99.65 E-value=1.3e-15 Score=131.94 Aligned_cols=240 Identities=17% Similarity=0.171 Sum_probs=155.4
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
.||+.+|++.++.+++..+++++ ..|+|.- +....++|.+.+++.+.+...+++ .+.++
T Consensus 192 ~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-------------------h~~is~~El~~I~~~k~~~~~~~~-~~vP~ 251 (466)
T KOG2532|consen 192 LGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-------------------HPNISEKELKYIEKGKSEAHVKKK-PPVPY 251 (466)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCCccc-------------------CCCCCHHHHHHHHhcccccccCCC-CCCCH
Confidence 59999999999999998888775 7788841 111133333333332222221111 46788
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh--
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR-- 165 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr-- 165 (337)
+++++++..|- +....+....+...+..|.|.++++. +++... ++..++..+...+..+++|.++||+-+|
T Consensus 252 ~~i~ts~~vwa-----i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 252 KAILTSPPVWA-----IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred HHHHcCHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 88998875543 33333344445778899999999875 888444 8999999999999999999999988652
Q ss_pred -------hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccch
Q psy11545 166 -------SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVR 238 (337)
Q Consensus 166 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 238 (337)
..-.++....+++++.+++ .+ ....+..++++.+.....+...... +.-..+. .+++-
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l~~---~~----------~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a 391 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVLAF---TS----------DEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHA 391 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHeeee---cC----------CCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHH
Confidence 2223344444444444443 21 1123333333333333222221111 2222232 45778
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHH---hcCCccchHHHHHHHHHHHHHhhee
Q psy11545 239 GIVGGLTTCACHFFIFLTVKSYNMFQT---HLTKEGTFLMYGCISLLGTIFFYVY 290 (337)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (337)
+..+|+.+....+.++++|.+.+.+.. ...|+..|++.+++.+++.++..++
T Consensus 392 ~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 392 GFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999999999999999999999999984 3479999999999998888664444
No 62
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.65 E-value=3.6e-15 Score=132.61 Aligned_cols=176 Identities=13% Similarity=0.063 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHH
Q psy11545 104 ILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 182 (337)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 182 (337)
..+.+..+.............|.+.++.+.+.+. .+....+.++...+.++.|+++||+|||+.+..+..+.+++.+.+
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~ 88 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3333444444444556777789999999887555 888888999999999999999999999999999999999888887
Q ss_pred HHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccC-CccchhhhhhHHHHHHHHHHHHHHHHhH
Q psy11545 183 GLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLTTCACHFFIFLTVKSYN 261 (337)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 261 (337)
+. .++...++....+.+....+..+.....+.+.+ |+++|+++.|+......+|..++|.+.+
T Consensus 89 ~~----------------a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 89 AF----------------SPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HH----------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 223333333333333333333444445555554 7789999999999999999999999999
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 262 MFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 262 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
.+.+..||++.|++...++++..++.++++|+.+
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999888777777666666677653
No 63
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.65 E-value=3.5e-15 Score=129.11 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHH
Q psy11545 103 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 181 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 181 (337)
+.+.....+....+........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444444444445566667888888888888555 77788888899999999999999999999999988887777766
Q ss_pred HHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhH
Q psy11545 182 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYN 261 (337)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 261 (337)
+.. ..+.+..++... ..+.......+..+.++.|.+|+++|+++.++.+....++..++|.+.+
T Consensus 85 ~~~---------------~~~~~~~~~~~~-l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 85 CSL---------------AETSSLFLAGRF-LQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred HHH---------------hCcHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 112222222222 2222222234455788999999999999999999999999999999988
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 262 MFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 262 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
.+.+..+|+..+++.+++.++..++.....||+++
T Consensus 149 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 149 LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888899998988888777777666666777643
No 64
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.64 E-value=1.7e-15 Score=130.34 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=125.0
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
...+....|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 79 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF----------- 79 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH-----------
Confidence 444566678888888888555 88888999999999999999999999999999999888888777666
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHH-HHhHHHHHhcCCccchH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV-KSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 274 (337)
..+...+....+..+.......+...+++.|.+|+++|+.+.++.+....+|..+++ .+.+.+.+..+|+..|+
T Consensus 80 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 80 -----STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred -----hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 122233333333333333344566678999999999999999999999999999999 46666667789999988
Q ss_pred HHHHHHHHHHHHhheeccCCC
Q psy11545 275 MYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+.+++.++..++.+++.||++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHheeeCCCc
Confidence 888777776666666677654
No 65
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.64 E-value=1.5e-14 Score=127.05 Aligned_cols=206 Identities=15% Similarity=0.065 Sum_probs=122.5
Q ss_pred hhHHHHHHHhhHHHHHHHHHhc-ccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
.+||+.+++.++++++..+..+ ++||.++. +.++. +++.+....+
T Consensus 170 ~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~~~~-----------------------------~~~~~~~~~~ 215 (437)
T TIGR00792 170 FGWFMFALVLALIGVVSLIICFFGTKERYSE-----IPKNI-----------------------------EKKLSLKQIF 215 (437)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CCccc-----------------------------ccCCCHHHHH
Confidence 4899999999998887766544 57876410 00000 0001112234
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
++.+++|.++......++...... ....+.+++.+.. +.+........+..++.+++.++.++++||+|||+.+
T Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~ 290 (437)
T TIGR00792 216 KALFKNDQLLILCLAYLFYNLAFN-----IKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF 290 (437)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHH-----HHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 455666655443332222222211 1112222222222 2222225555667888899999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC-------ccchhhh
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------TKVRGIV 241 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~ 241 (337)
..+..+.+++.+.+.+ . ..+.+...+...+.+.+.+. ..+..+++.+|..| ++.+|.+
T Consensus 291 ~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 355 (437)
T TIGR00792 291 AGGILLMVLGYLIFFF---A-----------GSNLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLV 355 (437)
T ss_pred HHHHHHHHHHHHHHHH---c-----------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence 8888777766655444 1 01122222222333333332 24555778888764 4567999
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhcCCc
Q psy11545 242 GGLTTCACHFFIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (337)
.|+.+....+|..+++.+.+.+.+..|+.
T Consensus 356 ~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 356 YSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999887764
No 66
>PRK10054 putative transporter; Provisional
Probab=99.64 E-value=8.8e-15 Score=126.42 Aligned_cols=162 Identities=10% Similarity=0.112 Sum_probs=117.3
Q ss_pred ccchhccchHHH-hhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIF-KDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|.++ ++.|++... ++..+...++..++.++.|+++||+|||+++..+.++.+++.+.+.+ .
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~---~------ 93 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL---V------ 93 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH---H------
Confidence 444455555555 456888555 88888888899999999999999999999998888877776665554 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
.+.+..++.....+...+ ...+....+..|..|+++|+++.++.+...++|..++|.+.+.+.+ .+|+..|.
T Consensus 94 ------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~ 165 (395)
T PRK10054 94 ------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFW 165 (395)
T ss_pred ------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHH
Confidence 122222222222222222 3345557888999999999999999999999999999999998875 68999998
Q ss_pred HHHHHHHHHHHHhheeccCCC
Q psy11545 275 MYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+.+++.++..++..+++|+++
T Consensus 166 ~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 166 LAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 887777766555445455543
No 67
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.64 E-value=3.7e-15 Score=129.64 Aligned_cols=163 Identities=16% Similarity=0.108 Sum_probs=122.8
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.+.+.+. ++......++..++.++.|+++||+|||+++..+.++..++.+.+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 99 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ----------- 99 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----------
Confidence 444566678888888888555 88888899999999999999999999999999988877776665554
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+.+..++...+.+.+.+ ...+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|+..|++
T Consensus 100 ----~~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 100 ----AWDFPSLLVARLLTGVGLG-GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ----hccHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 1223333333333333223 33455578899999999999999999999999999999988888888899988888
Q ss_pred HHHHHHHHHHHhheeccCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~ 295 (337)
.+++.++..++...++||+.
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 175 GGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCh
Confidence 77766665555555677753
No 68
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.63 E-value=2.1e-14 Score=124.38 Aligned_cols=226 Identities=12% Similarity=0.147 Sum_probs=135.8
Q ss_pred hHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
+||.+|++.++.+++..+..++ .||+|+. ++.++ ..+ .++++.+..+..
T Consensus 160 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~-------------------~~~~~~~~~~~~ 209 (396)
T TIGR00882 160 DPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN----ALG-------------------ANASAFSLKLAL 209 (396)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc----ccc-------------------cccCCCCHHHHH
Confidence 8999999999888877665554 5555421 00000 000 000111223456
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc----CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA----GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
+.+++|..+...+..+..... ......+.+.++.+. +.+... +.......+...++.+..+++.||+|||
T Consensus 210 ~~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~ 284 (396)
T TIGR00882 210 ELFRQRKFWMFVLYVVGVACV-----YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK 284 (396)
T ss_pred HHHcCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 777777654333222222211 112222334443332 333222 5566667778888889999999999999
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhH-
Q psy11545 166 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL- 244 (337)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~- 244 (337)
+.+.++..+.++....... . .+.+..+....+.+.+.... ......+..+..|++.++++.+.
T Consensus 285 ~~l~~~~~l~~l~~~~~~~---~------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~ 348 (396)
T TIGR00882 285 NALLIAGTIMSVRIIGSSF---A------------TTALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIG 348 (396)
T ss_pred hhHHHHHHHHHHHHHHHHh---c------------CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHH
Confidence 9988887777765554333 1 22333333322222222211 12234566777888888887776
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhh
Q psy11545 245 TTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
.+....+|+++++.+.|++.+..|++..|.+.+++.+++.++..
T Consensus 349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999988888777766543
No 69
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.63 E-value=9.2e-15 Score=127.07 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=124.0
Q ss_pred HHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHH
Q psy11545 108 YFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYI 186 (337)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 186 (337)
+..+.............|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-- 96 (405)
T TIGR00891 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF-- 96 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--
Confidence 333333334555667778888888887555 88888899999999999999999999999999988888877776655
Q ss_pred HHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 187 FATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
..+...+....+..+.......+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+.
T Consensus 97 --------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 97 --------------APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred --------------hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122223333333333333334455578899999999999999999999999999999999988887
Q ss_pred cC--CccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 267 LT--KEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 267 ~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
.+ |++.|.+.++..++.. +.....||++
T Consensus 163 ~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~ 192 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFAL-WLRKNIPEAE 192 (405)
T ss_pred cCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence 66 8887776555444433 3344567754
No 70
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.63 E-value=3.7e-15 Score=131.85 Aligned_cols=241 Identities=12% Similarity=0.055 Sum_probs=132.4
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
.|||+.|++.++++++..+.+++ .+|+|+.. .+.++. +.+..++..++++ ++.+.+..+
T Consensus 195 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~----------------~~~~i~~~~~~~~-~~~~~~~~~ 254 (465)
T TIGR00894 195 GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKF----------------EKKYINSSLQGQK-GSTRQSLPI 254 (465)
T ss_pred CCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHH----------------HHHHHHhhccccc-CCCCCCCCH
Confidence 38999999999998887766655 67887421 111110 0000100000000 011112235
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
.+.++++..+...+ ..+....+.+.+..|.|.++++ .|++... ++...+..++..++.+++|+++||+++|+.
T Consensus 255 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~ 329 (465)
T TIGR00894 255 KAIPKSLPVWAIWF-----AIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKT 329 (465)
T ss_pred HHHhcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666654433222 2222222355667788888765 4777544 777788889999999999999999865432
Q ss_pred HH---HHhHHHHHHH---HHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhh
Q psy11545 168 TF---ISSIGCGVSM---TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 241 (337)
Q Consensus 168 ~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 241 (337)
.. ...+...++. ....+.... . .......+..+.+... ...+..+..+....|..|. .+|.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~g~~ 397 (465)
T TIGR00894 330 LSLTAARKIFNGIGGLGPGIFAYALPY-L---------SAAFYLTIIILTLANA-VSSGPLAGVLINSLDLAPR-FLGFI 397 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-c---------CCchHHHHHHHHHHHH-HhhhhhhhhhhchhhcChh-HHHHH
Confidence 11 0001111111 111111111 0 0122222222222222 2222223334555677765 89999
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhc---CCccchHHHHHHHHHHHHHhh
Q psy11545 242 GGLTTCACHFFIFLTVKSYNMFQTHL---TKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~ 288 (337)
.++.+..+.++++++|.+.+.+.+.. +|...|.+.++..+++.++..
T Consensus 398 ~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 398 KGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 99999999999999999999887643 366677777777777765543
No 71
>PRK03699 putative transporter; Provisional
Probab=99.62 E-value=8.1e-15 Score=126.86 Aligned_cols=153 Identities=5% Similarity=-0.089 Sum_probs=105.8
Q ss_pred ccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......|.|.++++ .|++... +.......++..++.++.++++||++||+.+.....+.++...++.. .
T Consensus 221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~---~------ 291 (394)
T PRK03699 221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN---T------ 291 (394)
T ss_pred HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH---c------
Confidence 34456778888855 5887554 67777788889999999999999999999887766655554433322 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
.+.....+.....+. ...+..+...++..|..|. .++...+.......+|..++|.+.+++.+..|++..++
T Consensus 292 ------~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~ 363 (394)
T PRK03699 292 ------DDPSHLLYAILGLGF-FSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALL 363 (394)
T ss_pred ------CCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhh
Confidence 122222222222222 2223334445566676664 46777888888999999999999999999999998888
Q ss_pred HHHHHHHHHHHH
Q psy11545 275 MYGCISLLGTIF 286 (337)
Q Consensus 275 ~~~~~~~~~~~~ 286 (337)
..+++.+++.+.
T Consensus 364 ~~~~~~~~~~~~ 375 (394)
T PRK03699 364 TANGLYAVVFVM 375 (394)
T ss_pred hhHHHHHHHHHH
Confidence 887777766554
No 72
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.62 E-value=2.3e-14 Score=124.61 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=121.8
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
...+....|.+.++.+.+... ++......++..++.++.|+++||+|||+.+..+....+++.+.... .
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~---~------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL---A------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH---H-------
Confidence 444445567777888887555 77778888999999999999999999999999988887777766555 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
.+...+.......+.......+....++.|.+|++.|+.+.++......++..++|.+.+.+.+..+|++.+++
T Consensus 99 ------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 ------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 22222222333322222223455578889999999999999998888888999999999999898899999988
Q ss_pred HHHHHHHHHHHhheeccCCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~~ 296 (337)
.++++++..+..++..||+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCCc
Confidence 888877776655556777643
No 73
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.62 E-value=1.3e-14 Score=125.01 Aligned_cols=162 Identities=7% Similarity=0.057 Sum_probs=124.3
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.......|.+.++.|.+... ++......++..++.++.|+++||+|||+++..+..+.+++.+++.+
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~------------ 87 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL------------ 87 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH------------
Confidence 34555778888888887555 88889999999999999999999999999999999988888877666
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 276 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (337)
..+.+..++ ...+.+.......+....++.|++|+++|+.++++......++..+++.+.+.+.+..+|++.|.+.
T Consensus 88 ---~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 88 ---SSSYLMLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred ---hCcHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 123333333 3333332222223454677889999999999999999999999999999999998889999999988
Q ss_pred HHHHHHHHHHhheeccCCC
Q psy11545 277 GCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 277 ~~~~~~~~~~~~~~~~e~~ 295 (337)
+++.++..+..+...||.+
T Consensus 164 ~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 8877766655555677753
No 74
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.62 E-value=1.8e-14 Score=127.40 Aligned_cols=158 Identities=8% Similarity=-0.031 Sum_probs=111.3
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
......+.|.+.++.|++.+. ++......++..++.++.|+++||+|||+++..+.++.+++.++.++ .
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~------- 121 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL---V------- 121 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH---h-------
Confidence 444556677888888987555 66677788888999999999999999999998888777777666555 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH---------h
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT---------H 266 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 266 (337)
.+....++...+.+.+.+ ...+ ...+++|.+|+++|+.++|+.+...++|+.+++.+.+.+.. .
T Consensus 122 -----~s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 122 -----SSATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred -----cCHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 122222222222222222 2222 34578899999999999999998888888887766655432 1
Q ss_pred cCCccchHHHHHHHHHHHHHhheec
Q psy11545 267 LTKEGTFLMYGCISLLGTIFFYVYL 291 (337)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (337)
.||++.|++.++++++..++.+++.
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 4899999998888777665544433
No 75
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.62 E-value=8.9e-14 Score=120.66 Aligned_cols=159 Identities=11% Similarity=0.174 Sum_probs=106.0
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHH-HHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF-ISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|.+.++.|++... ........++..++.++.|+++||+|||+.+. .+.+..+++.+.+...... .
T Consensus 238 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~---- 312 (402)
T TIGR00897 238 LFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH-F---- 312 (402)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc-c----
Confidence 445567788888888887555 56667778899999999999999999988764 2333333332222221110 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
..+.+...+.....+.+.+ +..+. .....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...++
T Consensus 313 -----~~~~~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~ 384 (402)
T TIGR00897 313 -----GHSFAVALIIAIALGIFLA-GYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVW 384 (402)
T ss_pred -----CCcHHHHHHHHHHHHHHHH-HHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 0122222222223332222 22333 345567655 589999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhh
Q psy11545 275 MYGCISLLGTIFFY 288 (337)
Q Consensus 275 ~~~~~~~~~~~~~~ 288 (337)
+.+++.+++.++.+
T Consensus 385 ~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 385 IFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777666543
No 76
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.62 E-value=1.2e-14 Score=123.94 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=117.9
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
..+....|.+.++.+.+..+ ++....+.++..++.+..|+++||+|||+++..+......+.. ... .
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~--~--------- 75 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL--D--------- 75 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH--H---------
Confidence 34556778888888988555 7888888999999999999999999999876654443333221 111 0
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 276 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (337)
..+...+....+..+.. .+.........+|.+|+++|++++++.+....+|..+++.+.+.+.+..|||..|++.
T Consensus 76 ----~~~~~~l~~~R~l~G~g-~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 76 ----PFNYEWLLACQLLAALG-QPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred ----hccHHHHHHHHHHHHhH-hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 12233333333333222 2223334566789999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhheeccCCC
Q psy11545 277 GCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 277 ~~~~~~~~~~~~~~~~e~~ 295 (337)
++++++..++.++++||++
T Consensus 151 ~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 8888777777677788864
No 77
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.62 E-value=7.5e-14 Score=121.15 Aligned_cols=224 Identities=11% Similarity=0.107 Sum_probs=125.8
Q ss_pred hhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
.|||..|++.++..++..+..+++||+++. +++.++ . +++...++.
T Consensus 158 ~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~-----------------~--------------~~~~~~~~~ 203 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRS-----------------L--------------GEAVVGPLR 203 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccch-----------------h--------------HHHHHHHHH
Confidence 489999999998887766655668887531 000000 0 000122345
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHH-HHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIM-GIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
+.+++|..+.......+........ .....+.+.++.|++.+. +...... .++.+++.++++++.||+|||+.+
T Consensus 204 ~l~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l 279 (402)
T PRK11902 204 DFFSRRGAWALLLLIVLYKLGDAFA----GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL 279 (402)
T ss_pred HHHhCcCHHHHHHHHHHHHhHHHHH----HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5677765554333222222211111 122234445556777544 4544343 456889999999999999999988
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHH---HHHHHhccccchhhhhhcccCCccchhhhhhHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMT---FTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 245 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 245 (337)
..+..+..+..+.+...... ..+.+..+..... ..+.......+....++.+.+|.+. .++.
T Consensus 280 ~~~~~~~~l~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~ 344 (402)
T PRK11902 280 MLFGVLQAVSNLGYWVLAVT-----------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALL 344 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHH
Confidence 77666655554433321111 0112222222211 1111222223334556666666544 4555
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHh
Q psy11545 246 TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 287 (337)
+....++..+++.+.|.+.+..||+..|.+.+++++++.++.
T Consensus 345 ~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 345 SALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 556667777677789999999999988888888877776553
No 78
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.61 E-value=6.8e-14 Score=119.09 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=121.3
Q ss_pred ccchhccchHHHhhc-CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChh-hHHHHhHHHHHHHHHHHHHHHHhcCCC
Q psy11545 117 VNPVTFYAVNIFKDA-GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRS-LTFISSIGCGVSMTGLGLYIFATKDFW 193 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
......+.|.+.++. +.+... +.......++..++.++.+++.||+|||+ .+..+..+..++.+.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------- 261 (352)
T cd06174 191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL--------- 261 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---------
Confidence 455666777777765 666444 78888899999999999999999999999 888888888777776655
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccch
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTF 273 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (337)
..+.+.......+.+. ......+....+..|..|+++|++.+|+.+....++..+++.+.+.+.+..+++..+
T Consensus 262 ------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~ 334 (352)
T cd06174 262 ------APSLALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVF 334 (352)
T ss_pred ------hccHHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHH
Confidence 1222333333333333 333445666899999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11545 274 LMYGCISLLGTIFF 287 (337)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (337)
.+.+++.+++.++.
T Consensus 335 ~~~~~~~~i~~i~~ 348 (352)
T cd06174 335 LILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888888777654
No 79
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.61 E-value=6.7e-14 Score=120.61 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=110.0
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChh
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRS 166 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 166 (337)
++.+.+++|..+......++.... ......+.|.+..+.|.+.+. +.......++.++..++.+++.||+|+|+
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 271 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD 271 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 456677777655433322222221 222334556666777877544 66666777888888999999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHH
Q psy11545 167 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 246 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 246 (337)
.+..+.+..++..+.+.. . .+.+..++...+.+...+.. .+....+..+. +++++++..++.+
T Consensus 272 ~l~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (382)
T PRK11128 272 LLLLSAICGVVRWGLMGS---T------------TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYS 334 (382)
T ss_pred HHHHHHHHHHHHHHHHHh---h------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHH
Confidence 988888777776555443 1 22333333333333333332 33335666665 5556788888876
Q ss_pred -HHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHH
Q psy11545 247 -CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTI 285 (337)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 285 (337)
....+|..++|.+.|.+.+..|+. .++..+++.+++.+
T Consensus 335 ~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~ 373 (382)
T PRK11128 335 ALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 445667789999999999988863 56666655554443
No 80
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.61 E-value=6e-14 Score=120.19 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=96.3
Q ss_pred ccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11545 122 FYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 199 (337)
Q Consensus 122 ~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
.+.|.+.++ .+.+... +.......++.+++.++.+++.||++||+.+..+..+.+++...+.+ .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------- 297 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGL---T----------- 297 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh---h-----------
Confidence 566777765 5776444 77777888899999999999999999999888776666665555444 1
Q ss_pred cchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 200 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
..+.+...+.....+.+.+ ...+...++..|..|++.|+++.|+.+....++..+++.+.|.+.+..|
T Consensus 298 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 298 PPNFPLFLVLWFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0112222333333333333 3345557889999999999999999999999999999999999988654
No 81
>PRK10504 putative transporter; Provisional
Probab=99.61 E-value=2.1e-14 Score=127.35 Aligned_cols=162 Identities=11% Similarity=0.050 Sum_probs=123.3
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
......+.|.+.++.|.+... ++......++..++.++.|+++||+|||+++..+..+.+++.+.+.+
T Consensus 26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----------- 94 (471)
T PRK10504 26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL----------- 94 (471)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 455667889999999888555 67777788888999999999999999999999887777776665544
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+.+..+ ....+.+.......+...+++.|.+|++.|+++.++.+....+|..++|.+.+.+.+..||++.|.+
T Consensus 95 ----~~~~~~l~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 95 ----SGTLNELL-LARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred ----hCCHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 11222233 3333333333334556678889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhheeccCC
Q psy11545 276 YGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~ 294 (337)
...++.+..+......|+.
T Consensus 170 ~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 8777666666555555553
No 82
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.61 E-value=6.2e-14 Score=121.92 Aligned_cols=220 Identities=11% Similarity=-0.015 Sum_probs=125.6
Q ss_pred hhHHHHHHHhhHHHHHHHHHhc-ccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 11 LSWDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
.+||+.|++.++..++..+..+ .+||+++.. ++ + . . .++...++
T Consensus 164 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~------------~--~-----------------~~~~~~~~ 208 (406)
T PRK15402 164 LPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-K------------L--S-----------------LKELGRDY 208 (406)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-c------------c--c-----------------HHHHHHHH
Confidence 4899999998888877666544 478875310 00 0 0 0 00011223
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
.+.++++..+...+...+.... ......+.|.++. +.+.+... +.......++.+++.++.++++||+++|+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~ 283 (406)
T PRK15402 209 KLVLKNRRFVAGALALGLVSLP-----LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL 283 (406)
T ss_pred HHHHcCcHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4456666544322221111111 1223334565554 45776444 555555667788899999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHH
Q psy11545 168 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 247 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 247 (337)
+.++.++.+++.+.+...... . .....+......+.+.+.+... +......... +++.||++.++.+.
T Consensus 284 ~~~~~~~~~~g~~~~~~~~~~-~---------~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~~-~~~~~g~~~~~~~~ 351 (406)
T PRK15402 284 IRMGLWPMVAGLLLAALATVI-S---------SHAYLWLTAGLSLYAFGIGLAN-AGLYRLTLFS-SDVSKGTVSAAMGM 351 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-c---------cccHHHHHHHHHHHHHHHHHHh-hhHHHHHhhh-ccccccHHHHHHHH
Confidence 888877776666665543211 0 0122222333333333333322 2223333333 44789999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHH
Q psy11545 248 ACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLL 282 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 282 (337)
...++..+++.+.+.+.+..++........+..++
T Consensus 352 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 352 LSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 99999999999999988877755433333333333
No 83
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.61 E-value=2.3e-14 Score=126.16 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=113.0
Q ss_pred hhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 120 VTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 120 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
+....|++.++ |++... ++......++..++.++.|+++||+|||+++..+.++.+++.+.+.+....
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~---------- 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------- 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence 45566776666 887555 788888999999999999999999999999999988888877766652111
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHH-HHHhHHHHHhcCCccchHHHH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLT-VKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~ 277 (337)
..+.+..++...+.+.+.+.. .+.....+.|.+|+++|++++++.+....+|+.+. +.+...+....+|++.|++.+
T Consensus 117 -~~~~~~~~~~~~l~gi~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 117 -TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred -cccHHHHHHHHHHHHHHHhcc-chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 011222223223333333333 34445677899999999999999999888886544 443333333458999998888
Q ss_pred HHHHHHHHHhheeccCCC
Q psy11545 278 CISLLGTIFFYVYLPETK 295 (337)
Q Consensus 278 ~~~~~~~~~~~~~~~e~~ 295 (337)
+++++..++.++++||+.
T Consensus 195 ~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 195 FAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHHccCCH
Confidence 777776666666677654
No 84
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.61 E-value=1.2e-13 Score=119.12 Aligned_cols=148 Identities=8% Similarity=-0.010 Sum_probs=93.5
Q ss_pred hHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchh
Q psy11545 125 VNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVS 203 (337)
Q Consensus 125 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (337)
|++.+..|.+.+. +.......++..++.++.+++.||+|+|+.+..+..+.+++.+.+.... ...
T Consensus 224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~ 289 (382)
T PRK10091 224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG--------------GMK 289 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH--------------hhH
Confidence 3333446777555 7777888899999999999999999999998887777666654443211 112
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh-cCCccchHHHHHHHHH
Q psy11545 204 YLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMYGCISLL 282 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 282 (337)
+...........+......+.......+..|.+.++.+ ..+....+|..++|.+.|.+.+. .+|+..+.+.++++++
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~ 367 (382)
T PRK10091 290 TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFA 367 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHH
Confidence 22222222222222222222222344455555555544 34677889999999999999985 6788778777666665
Q ss_pred HHHHhh
Q psy11545 283 GTIFFY 288 (337)
Q Consensus 283 ~~~~~~ 288 (337)
......
T Consensus 368 ~~~~~~ 373 (382)
T PRK10091 368 AMSSLL 373 (382)
T ss_pred HHHHHH
Confidence 554433
No 85
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.60 E-value=3.8e-14 Score=122.81 Aligned_cols=162 Identities=10% Similarity=-0.003 Sum_probs=119.1
Q ss_pred chhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 119 PVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
......|.+.++.+.+... ++......++..++.++.|+++||+|||+.+..+..+.+++.+....
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~------------- 92 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF------------- 92 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-------------
Confidence 3444567788888888555 78888899999999999999999999999999988877777766554
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (337)
..+...+.....+.+.......+....+..|.++.+.|+.+.++.+....++..++|.+.+.+.+..||+..|.+.+
T Consensus 93 ---~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 93 ---AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred ---HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 12222222222222222222234445677888998999999999999999999999999999998889999998887
Q ss_pred HHHHHHHHHhheeccCCCC
Q psy11545 278 CISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 278 ~~~~~~~~~~~~~~~e~~~ 296 (337)
+..++..++..++.||+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 170 LLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHhCCccCc
Confidence 7666555554555677543
No 86
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.60 E-value=2.3e-14 Score=125.48 Aligned_cols=146 Identities=13% Similarity=0.065 Sum_probs=113.0
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
.....+..|.+.++.|.+... ++......++..++.++.|+++||+|||+++..+.++.+++.+...+
T Consensus 34 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~----------- 102 (426)
T PRK12307 34 FMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL----------- 102 (426)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-----------
Confidence 445566667777788887555 78888899999999999999999999999999999988888877666
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+...+.......+.......+....++.|.+|+++|+++.++......+|.++++.+.+.+.+..+|++.|++
T Consensus 103 -----~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 103 -----ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred -----HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 122223333333333333334455578899999999999999999999999999999998888888899988876
Q ss_pred HHH
Q psy11545 276 YGC 278 (337)
Q Consensus 276 ~~~ 278 (337)
...
T Consensus 178 ~~~ 180 (426)
T PRK12307 178 GLL 180 (426)
T ss_pred HHH
Confidence 443
No 87
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.60 E-value=1.9e-14 Score=126.23 Aligned_cols=164 Identities=10% Similarity=0.039 Sum_probs=116.5
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.......|.+. +.|.+.+. ++......++..++.++.|+++||+|||+++..+.++.+++.+.+......
T Consensus 44 ~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-------- 114 (438)
T TIGR00712 44 KNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-------- 114 (438)
T ss_pred ccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--------
Confidence 33445566555 45887555 888888999999999999999999999999988888877776665441100
Q ss_pred CCCcchhHHHHHH-HHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH-hcCCccchH
Q psy11545 197 KFPAFVSYLPVLM-LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-HLTKEGTFL 274 (337)
Q Consensus 197 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 274 (337)
..+...+.. ..+.+.+.+.. .+.....+.|.+|+++|++++++.+....+++.+++.+.+...+ ..+|+..|+
T Consensus 115 ----~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~ 189 (438)
T TIGR00712 115 ----TSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALY 189 (438)
T ss_pred ----cchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHH
Confidence 112222222 22233333333 34446778899999999999999999999999999888776554 468999999
Q ss_pred HHHHHHHHHHHHhheeccCCC
Q psy11545 275 MYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+.++++++..++.++++||++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 190 FPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHHHHHHHHhccCCH
Confidence 888887776666666677653
No 88
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.60 E-value=3.1e-14 Score=126.01 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=114.5
Q ss_pred hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHH
Q psy11545 130 DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 208 (337)
Q Consensus 130 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
+.+++... +.....+.++..++.+++|+++||+|||+.+..+.++.+++.++..... ......++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~l~ 135 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA--------------GGGIALVV 135 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH--------------HcCchHHH
Confidence 34555444 7788888999999999999999999999999998888777766554311 11222333
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh-cCCccchHHHHHHHHHHHHHh
Q psy11545 209 MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 287 (337)
...++.+.......+....+++|++|+++|+++.++.+....+|..+++.+.+.+.+. .||+..|++.+++.++..++.
T Consensus 136 ~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 136 FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred HHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence 3344444444455666678999999999999999999999999999999999999988 499999999888777666554
Q ss_pred heeccCC
Q psy11545 288 YVYLPET 294 (337)
Q Consensus 288 ~~~~~e~ 294 (337)
+.+.+|.
T Consensus 216 ~~~~~~~ 222 (465)
T TIGR00894 216 FVFPADD 222 (465)
T ss_pred HHHhcCC
Confidence 4445443
No 89
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.59 E-value=1.5e-14 Score=123.37 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=121.1
Q ss_pred hhccch-HHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 120 VTFYAV-NIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 120 ~~~~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
.....| .+.++.|.+... ++......++..++.++.|+++||+|||+++..+.++.+++.+...+ .
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~---~--------- 82 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF---A--------- 82 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---H---------
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh---h---------
Confidence 444556 566677877555 88888899999999999999999999999999999888888554443 1
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (337)
.+.+ .++...+..+.......+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+|++.|++.+
T Consensus 83 ---~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 83 ---SNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp ---CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred ---hhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 1333 333333333333334456668899999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHhheeccCCC
Q psy11545 278 CISLLGTIFFYVYLPETK 295 (337)
Q Consensus 278 ~~~~~~~~~~~~~~~e~~ 295 (337)
++.++..++...+.++++
T Consensus 159 ~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHHHHHCCC---S
T ss_pred chhhhhhhhHhhhhhhcc
Confidence 988888765445555433
No 90
>KOG1330|consensus
Probab=99.59 E-value=7.1e-16 Score=128.30 Aligned_cols=168 Identities=11% Similarity=0.092 Sum_probs=135.6
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
-+.+..-.+.+-...+.+.+. +++.....++..++++++|++.||+.||+++.+|..+..++.+..++
T Consensus 49 r~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~f----------- 117 (493)
T KOG1330|consen 49 RYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGF----------- 117 (493)
T ss_pred hhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHH-----------
Confidence 344444444554555676444 88999999999999999999999999999999999999999988888
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-CccchH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFL 274 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~ 274 (337)
....+.+.+...+.+..-..+.++...+++|.+|.++|++++++.+++..+|..+|-.....+.+..+ ||+.|.
T Consensus 118 -----s~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 118 -----SNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred -----HHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 23445555555555555567788889999999999999999999999999999888777777777666 999999
Q ss_pred HHHHHHHHHHHHhheeccCCCCCCHH
Q psy11545 275 MYGCISLLGTIFFYVYLPETKNKTLQ 300 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e~~~~~~~ 300 (337)
..+++.++..++..++.+|..++..+
T Consensus 193 ~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred eehHHHHHHHHHHHhhccCccccccc
Confidence 99999999998888888887655333
No 91
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.59 E-value=2.5e-13 Score=117.43 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=91.5
Q ss_pred chHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcch
Q psy11545 124 AVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFV 202 (337)
Q Consensus 124 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (337)
.|.+.++.|++.+. +......+++.+++.++.+++.||.+++ .+..+..+..+..+.+... . .+
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~--~------------~~ 304 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLW--G------------SD 304 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHH--h------------hh
Confidence 46666777887555 6777778889999999999999996544 4333333333332222220 1 12
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHH
Q psy11545 203 SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLL 282 (337)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 282 (337)
.+.......+.+.+.+.. .+...+++.+..| +.++.+.++......+|..+++.+.|.+.+..|+...+...+++.++
T Consensus 305 ~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 305 KIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 233333333333333332 3333456677777 44667777777888999999999999999998888777766655544
Q ss_pred HHH
Q psy11545 283 GTI 285 (337)
Q Consensus 283 ~~~ 285 (337)
..+
T Consensus 383 ~~~ 385 (394)
T PRK10213 383 TAL 385 (394)
T ss_pred HHH
Confidence 443
No 92
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.59 E-value=7.2e-14 Score=121.66 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=118.5
Q ss_pred ccchhccchHHHhhcCCCchh------HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhc
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN------NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 190 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (337)
......+.|.+.++.|.+..+ +....+..+...++.++.|+++||+|||+.+..+.+..+++.+++.. .
T Consensus 30 ~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~-- 104 (408)
T PRK09874 30 FSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL---A-- 104 (408)
T ss_pred HHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH---H--
Confidence 444566778888888776322 45566777888999999999999999999999888777777665544 1
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCc
Q psy11545 191 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (337)
.+.+..++...+.+. .+ +..+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+|+
T Consensus 105 ----------~~~~~~~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (408)
T PRK09874 105 ----------QNIWQFLILRALLGL-LG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR 172 (408)
T ss_pred ----------hhHHHHHHHHHHHHH-hh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 122222222222222 22 334555677889999999999999999999999999999999999989999
Q ss_pred cchHHHHHHHHHHHHHhheeccCC
Q psy11545 271 GTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
..+++.+++.++..+..+++.||.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 173 PVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 999888887777666655556654
No 93
>PRK10504 putative transporter; Provisional
Probab=99.58 E-value=1.6e-13 Score=121.72 Aligned_cols=162 Identities=9% Similarity=0.046 Sum_probs=105.1
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
+.++++.++......++... +......+.|++++. .|.+... ++......++..++.++.++++||+|||+++
T Consensus 256 ~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~ 330 (471)
T PRK10504 256 KLFRTRTFSLGLAGSFAGRI-----GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL 330 (471)
T ss_pred HHhcccchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 46677765443222222222 133345566777764 5776444 6666777777888889999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
..+..+.++..+++.+.... ...+.........+.+.+... +....+..+..|++.++.++++.++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 331 VATTLGLALVSLLFMLVALL------------GWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred HHHHHHHHHHHHHHHhcccc------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHHHHHHH
Confidence 88887777665555441100 111111222222223333232 33457777889999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhcCCc
Q psy11545 249 CHFFIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~ 270 (337)
..+|..+++.+.+.+.+..|+.
T Consensus 398 ~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 398 MQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999998876653
No 94
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.58 E-value=6.3e-14 Score=123.32 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=115.6
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.....+.|.+.++.|.+.+. ++......++..++.++.|+++||+|||+.++.+.++..++.+.+++.
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------- 104 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS----------- 104 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----------
Confidence 44566788888888887555 777777777888899999999999999999999888887777666551
Q ss_pred CCCcchhHHHHHHH-HHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 197 KFPAFVSYLPVLML-MTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
.+.+..+... .+.+.+.+.. .+....++.+.+| +.|+++.++.+....+|..++|.+.+.+.+..||+++|++
T Consensus 105 ----~~~~~l~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 105 ----SNVIELYLTAGFITGLGLAFN-FQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred ----hhHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 1122222222 2222222222 2334567778886 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhheecc
Q psy11545 276 YGCISLLGTIFFYVYLP 292 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ 292 (337)
.+++.++..+..++..+
T Consensus 179 ~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 179 LGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 98877766554444333
No 95
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.58 E-value=3.3e-13 Score=116.58 Aligned_cols=202 Identities=16% Similarity=0.125 Sum_probs=118.3
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhc-ccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 88 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
..+||+.|++.++..++..+..+ +.||+++. ++.+ . .+....+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------~-----------------~~~~~~~ 198 (385)
T TIGR00710 155 WLSWHAIFAFLSLAGILLSALIFFILPETLPY----EARI---------------Q-----------------ISTYFET 198 (385)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----cccC---------------C-----------------HHHHHHH
Confidence 34899999998888776665544 47876521 0000 0 0001122
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChh
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRS 166 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 166 (337)
..+.+++++.+...+....... .......+.|.++. +.|.+... +.......++.+++.++.+++.||+|||+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 273 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYGASFG-----GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS 273 (385)
T ss_pred HHHHHcCchhHHHHHHHHHHHH-----HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3445566654433222221111 12334455666665 56776544 67777788899999999999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHH-HHHHHHHHhccccchhhhhhcccCCccchhhhhhHH
Q psy11545 167 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLM-LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 245 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 245 (337)
.+..+..+..++.+++...... .......... ..+.+.+.+. ..+....+..|..| +.|+++.++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~ 340 (385)
T TIGR00710 274 LLRMGLILFAVSAVLLEITAIL-----------GLGSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALF 340 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHH
Confidence 8888877766666555442211 0112222222 2222222232 23444677778877 5789999999
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q psy11545 246 TCACHFFIFLTVKSYNMFQT 265 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~ 265 (337)
+...+.++.+.+.+.+.+.+
T Consensus 341 ~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 341 GTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 98888766666666664433
No 96
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.58 E-value=1.7e-13 Score=118.58 Aligned_cols=138 Identities=11% Similarity=0.107 Sum_probs=83.7
Q ss_pred ccchHHH-hhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11545 122 FYAVNIF-KDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 199 (337)
Q Consensus 122 ~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
.+.|.++ .+.|++... +......+++.+++.++.+++.||+|||+.+..+..+..++.+.+....
T Consensus 224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------------- 290 (392)
T PRK10473 224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP------------- 290 (392)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3445544 445777544 6667778888999999999999999999999888877776666555411
Q ss_pred cchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHH
Q psy11545 200 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCI 279 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 279 (337)
..............+.+.+.. .....+..|.+.|+ +.......++..+++.+.+++.+..|+.......+.+
T Consensus 291 --~~~~~~~~~~l~~~g~~~~~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 362 (392)
T PRK10473 291 --SHAVSLFGITLICAGFSVGFG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGIL 362 (392)
T ss_pred --HHHHHHHHHHHHHHHHHHHhH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 122222222233333333221 23334455554443 4444555667777777778888877876544444433
Q ss_pred H
Q psy11545 280 S 280 (337)
Q Consensus 280 ~ 280 (337)
.
T Consensus 363 ~ 363 (392)
T PRK10473 363 I 363 (392)
T ss_pred H
Confidence 3
No 97
>PRK11043 putative transporter; Provisional
Probab=99.58 E-value=3.7e-13 Score=116.90 Aligned_cols=201 Identities=14% Similarity=0.076 Sum_probs=119.4
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
..|||+.|++.+++.++..+..++++|+++ +.+ + ++++.++
T Consensus 156 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~----------------------------------~~~~~~~ 196 (401)
T PRK11043 156 HFGWQAIFATLFAITLLLILPTLRLKPSKK----ARK-Q----------------------------------SQDALTF 196 (401)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHcCCCCC----ccc-c----------------------------------chHHHHH
Confidence 349999999998888877766666665531 000 0 0011234
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
++.+++++.+...+....... .......+.|.++++.|++... +.......++..++.++.+++.||+++|+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~ 271 (401)
T PRK11043 197 KQLLKSKTYLGNVLIFAACSA-----AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL 271 (401)
T ss_pred HHHHcChhHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 445566554432222211111 1223345667777777887544 6666666778888999999999999999877
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
.......+++.+.+...... . ....+..+......+.+.+ ...+.......|..| +.||++.|+.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 339 (401)
T PRK11043 272 PWLLVLFAVSVIAIWLASLL-S---------HPSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTL 339 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHh-c---------cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHH
Confidence 66555555444433322111 0 0122222222223333333 334444566667666 5799999999999
Q ss_pred HHHHHHHHHHHhHHHHHh
Q psy11545 249 CHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~ 266 (337)
+..++..++.+.+.+.+.
T Consensus 340 ~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 340 QLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHccCC
Confidence 988999999988888764
No 98
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.57 E-value=4.1e-13 Score=115.83 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=140.2
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 88 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
..+||.+.++.+++.++..++.++ ++|.|. ++....+
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------------------~~~~~~~ 244 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------------------SRASIAD 244 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------------------------------------------cccCHHH
Confidence 346999998888888776665554 555431 0112234
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
..+.+|+|+.|...++.++ .+.++..+.++.|++.++. ++... .....+..+...+..+++|+++||+|+|++
T Consensus 245 ~~~vlk~~~~Wllslly~~-----tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v 318 (462)
T PRK15034 245 QLPVLQRLHLWLLSLLYLA-----TFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV 318 (462)
T ss_pred HHHHhCCCchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence 5567888876653333322 2223555666778777663 43222 333444567788888999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCc------------
Q psy11545 168 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT------------ 235 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------------ 235 (337)
+.++.+...++...+.... |.+. ..+.+.....+.......+.+-.++ +-++++.+|+
T Consensus 319 l~~~~i~~~i~~~~~~l~l--p~~~-------~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~ 388 (462)
T PRK15034 319 TLINFIFMAIFSALLFLTL--PGTG-------SGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGS 388 (462)
T ss_pred HHHHHHHHHHHHHHHHHHh--cccc-------ccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccc
Confidence 9988877766654433211 1110 0122222332322233344443333 6778888874
Q ss_pred ---------cchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-CccchHHHHHHHHHHHHHhheec
Q psy11545 236 ---------KVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYVYL 291 (337)
Q Consensus 236 ---------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 291 (337)
++-|.+.|+....+.+|+++.|.+++...+..| +...|+.+.+..+++.++.|.++
T Consensus 389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 145788899999999999999999998888765 44467778888888777776554
No 99
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.57 E-value=3.6e-14 Score=122.18 Aligned_cols=160 Identities=12% Similarity=0.105 Sum_probs=123.3
Q ss_pred hhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 120 VTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 120 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
.....|.+.++.|.+... +.......++..++.++.|+++||+|||+.+..+.++.+++.+.+.. .
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~---~---------- 76 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL---A---------- 76 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH---H----------
Confidence 345667778888887555 78888899999999999999999999999999998888888777665 1
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 278 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (337)
.+.+...+ ..+..+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|++.+++.++
T Consensus 77 --~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 77 --QTIDQLIY-MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred --ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 12222233 233333333333445578899999999999999999999999999999999999998999999988888
Q ss_pred HHHHHHHHhheeccCCC
Q psy11545 279 ISLLGTIFFYVYLPETK 295 (337)
Q Consensus 279 ~~~~~~~~~~~~~~e~~ 295 (337)
++++..++..++.||++
T Consensus 154 ~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 154 AAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHhCCccC
Confidence 77777666556667653
No 100
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.57 E-value=8.1e-14 Score=119.38 Aligned_cols=158 Identities=9% Similarity=0.042 Sum_probs=117.3
Q ss_pred chhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 119 PVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
......|.+..+.+.+... ++......++..++.++.|+++||+|||+++..+.++..++.+...+....
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------- 87 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL--------- 87 (365)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 3444556677777776444 788888899999999999999999999999999888877777666553221
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (337)
...+...+.......+.......+...+++.|++|+++|+.+.++.+....+|..+++.+.+.+.+..||++.+++.+
T Consensus 88 --~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 88 --GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 011233333333333333333455667899999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHh
Q psy11545 278 CISLLGTIFF 287 (337)
Q Consensus 278 ~~~~~~~~~~ 287 (337)
+..++..+..
T Consensus 166 ~~~~~~~~~~ 175 (365)
T TIGR00900 166 VGFAISALLI 175 (365)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 101
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.56 E-value=6.1e-14 Score=124.07 Aligned_cols=178 Identities=11% Similarity=0.000 Sum_probs=125.1
Q ss_pred HHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHH
Q psy11545 105 LMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLG 183 (337)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 183 (337)
..++.+...+..-..+....|.+.++.|.+... ++..+.+.++..++.++.|+++||+|||+++..+.++.++..+.++
T Consensus 33 ~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 112 (467)
T PRK09556 33 VVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFG 112 (467)
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHH
Confidence 333333333333455566678888899988555 8888889999999999999999999999999988888777776665
Q ss_pred HHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy11545 184 LYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMF 263 (337)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (337)
..... ...+...++......+.......+....++.|++|+++||+++|+......+|.++++.+..++
T Consensus 113 ~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 113 ASLGS-----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred HHHhc-----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence 53211 1123333333333333333333466678999999999999999999999999999998887776
Q ss_pred HHhc---CCccchHHHHHHHHHHHHHhheeccC
Q psy11545 264 QTHL---TKEGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 264 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
.+.. +|+..|.+.+++.++..++.+++.++
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 6643 57777777777666655554444444
No 102
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.56 E-value=2.2e-13 Score=121.60 Aligned_cols=147 Identities=14% Similarity=0.028 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
++......++..++.++.|+++||+|||+.+..+.++..++.++.++.... . .......++...+..+..
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~--------~~~~~~~~~~~r~l~G~~ 128 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--S--------PKSVMATLCFWRFWLGVG 128 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--c--------cchHHHHHHHHHHHHHHH
Confidence 577888889999999999999999999999999888888877766551100 0 001122333333333333
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH-----------------------hcCCccchH
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-----------------------HLTKEGTFL 274 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~g~~~~~~ 274 (337)
..+..+....++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+||..+.
T Consensus 129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~ 208 (502)
T TIGR00887 129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIG 208 (502)
T ss_pred HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHH
Confidence 333456668999999999999999999999999999888887765432 136888886
Q ss_pred HHHHHHHHHHHHhheeccCCC
Q psy11545 275 MYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+.++.+++..+ ..+++||+.
T Consensus 209 ~~~ip~~i~~~-~~~~lpESp 228 (502)
T TIGR00887 209 FGAVPALLALY-FRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHH-HHHhCCCCH
Confidence 66655554443 356789973
No 103
>PRK03699 putative transporter; Provisional
Probab=99.56 E-value=2.7e-13 Score=117.34 Aligned_cols=154 Identities=13% Similarity=0.033 Sum_probs=115.6
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.+.+... ++......++..++.++.|+++||+|||+++..+.++.+++.++..+
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~----------- 91 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF----------- 91 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445666678888888888555 77788888999999999999999999999999888888877776665
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH-hcCCccchH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-HLTKEGTFL 274 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 274 (337)
..+.+..++...+.+.+.+.. .+....++.|.+|++.|+.+.+..+....+++.++|.+.+.+.+ ..+|++.|.
T Consensus 92 ----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 92 ----SHSLALFSIAMFVLGVVSGIT-MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred ----cchHHHHHHHHHHHHHhhHhh-ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 122233333333333333333 34456788999999999999999888888899999998888765 569999998
Q ss_pred HHHHHHHHHHHH
Q psy11545 275 MYGCISLLGTIF 286 (337)
Q Consensus 275 ~~~~~~~~~~~~ 286 (337)
+.+++.++..++
T Consensus 167 ~~~~~~~~~~~~ 178 (394)
T PRK03699 167 CIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHH
Confidence 887776665544
No 104
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.56 E-value=2e-13 Score=117.09 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=114.6
Q ss_pred ccchhccchH-HHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVN-IFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|. +.++.|.+... ++......++..++.++.|+++||+|||+.+.++.++.+++.+.+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--------- 87 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--------- 87 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 4556677774 66778888655 888889999999999999999999999999999998888887776661
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh--------
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-------- 266 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 266 (337)
..+...+....+..+..+.. .+....++.|.+|+++|+.+.++......+|..+++.+.+.+...
T Consensus 88 ------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 88 ------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred ------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 10233333333333323322 344568899999999999999999988888888887777766652
Q ss_pred --cCCccch-HHHHHHHHHHHHHhheeccCC
Q psy11545 267 --LTKEGTF-LMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 267 --~g~~~~~-~~~~~~~~~~~~~~~~~~~e~ 294 (337)
.+|++.+ +..+++..+..++.+.+.+|+
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 3788888 444554444444444445554
No 105
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.56 E-value=3.1e-13 Score=120.19 Aligned_cols=159 Identities=14% Similarity=0.044 Sum_probs=109.9
Q ss_pred CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHH
Q psy11545 132 GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML 210 (337)
Q Consensus 132 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
+.+... ++......++..++.++.|+++||+|||+++..+..+..++.+..++........ . .........++..
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~-~---~~~~~~~~~l~~~ 126 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI-G---PDNTGYVPEFVIY 126 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc-c---ccchhHHHHHHHH
Confidence 444333 7888889999999999999999999999999999888877766655411000000 0 0001222333344
Q ss_pred HHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH--------HhcCCccchHHHHHHHHH
Q psy11545 211 MTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ--------THLTKEGTFLMYGCISLL 282 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~ 282 (337)
.++.+....+..+...++++|.+|+++|+.++++.+....+|..+++.+.+.+. +..||++.|++.++..++
T Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~ 206 (479)
T PRK10077 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALL 206 (479)
T ss_pred HHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHH
Confidence 444444444555667889999999999999999999988888888776654433 346899999887777666
Q ss_pred HHHHhheeccCCC
Q psy11545 283 GTIFFYVYLPETK 295 (337)
Q Consensus 283 ~~~~~~~~~~e~~ 295 (337)
..+. .+++||+.
T Consensus 207 ~~~~-~~~l~~s~ 218 (479)
T PRK10077 207 FLML-LYFVPETP 218 (479)
T ss_pred HHHH-HHcCCCCc
Confidence 5543 56678874
No 106
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.55 E-value=2.3e-13 Score=118.62 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=111.3
Q ss_pred ccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-CChhhHHHHhHHHHHHHHHHHHHHHHhcCCC
Q psy11545 117 VNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDFW 193 (337)
Q Consensus 117 ~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
++....+.|.++.+ .|++... ......+.+...++.+++|+++||+ |||+.+.++.++.+++.+++.. .
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~---~----- 96 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA---S----- 96 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH---h-----
Confidence 55566667766654 5887544 6677777788888999999999999 9999999999888887765543 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCcc--chhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK--VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (337)
............+...+.+. ..+...++++|.+|++ .|.++.++.+...++|+.++|.+.+++.+..||+.
T Consensus 97 ------~~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~ 169 (493)
T PRK15462 97 ------EIHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM 169 (493)
T ss_pred ------hcchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence 00111122222222222222 2344468899999986 79999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHH
Q psy11545 272 TFLMYGCISLLGTIF 286 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~ 286 (337)
.|.+.++..+++.+.
T Consensus 170 ~F~iaaigm~l~li~ 184 (493)
T PRK15462 170 GFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988866555444433
No 107
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.54 E-value=1.5e-13 Score=122.76 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=113.2
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+.+.+
T Consensus 36 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 104 (496)
T PRK03893 36 FVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF----------- 104 (496)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445566678888888888555 77788888999999999999999999999999998888887777666
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+...+....++.+....+..+....++.|.+|++.|+.+.++......+|..+++.+.+.+.+..+|++.|.+
T Consensus 105 -----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 105 -----APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 122233333333333333344455578899999999999999999999999999999999999999999988776
Q ss_pred HHH
Q psy11545 276 YGC 278 (337)
Q Consensus 276 ~~~ 278 (337)
.++
T Consensus 180 ~~~ 182 (496)
T PRK03893 180 GIL 182 (496)
T ss_pred HHH
Confidence 433
No 108
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.54 E-value=2e-13 Score=118.28 Aligned_cols=157 Identities=9% Similarity=-0.002 Sum_probs=115.4
Q ss_pred hccchH-HHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 121 TFYAVN-IFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 121 ~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
..+.+. +.++.|.+... ++......+...+..++.|+++||+|||+.+..+..+.+++.+.+.. .
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~---~---------- 96 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI---A---------- 96 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH---h----------
Confidence 334443 44566887555 77777778888888999999999999999999999888888777655 1
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 278 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (337)
.+.+...+ .....+.......+...+++.|.+|+++|+++.|+......+|..++|.+.+.+. ..||++.|++.++
T Consensus 97 --~~~~~l~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~ 172 (400)
T PRK11646 97 --HEPWLLWL-SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAV 172 (400)
T ss_pred --ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 12232333 3333332232334555688899999999999999999999999999999999998 6799988888877
Q ss_pred HHHHHHHHhheeccCC
Q psy11545 279 ISLLGTIFFYVYLPET 294 (337)
Q Consensus 279 ~~~~~~~~~~~~~~e~ 294 (337)
+.++..++..++.||.
T Consensus 173 ~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 173 LFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7666655444455653
No 109
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.54 E-value=9.9e-14 Score=123.60 Aligned_cols=159 Identities=11% Similarity=-0.040 Sum_probs=105.3
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 168 (337)
+.++++..+...+........ .....++.|.++++ .|++... +.......++..++.++.|++.||+|||+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 324 (485)
T TIGR00711 250 RLFKYRNFTIGCVYMSLLGLG-----LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV 324 (485)
T ss_pred HHHcCCChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH
Confidence 466666655443332222221 33445667777766 4777544 7777888899999999999999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 169 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
..+..+.+++...+.+.... ....+.......+.+.+.+....+. .....+..|++.|+++.|+.+..
T Consensus 325 ~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~g~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 325 TIGLILYAVGFYWRAFTFTP-----------DTPFLAIALPQFIRGFGMGCFFMPL-TTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred HHHHHHHHHHHHHHhccCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHhHHHHHHHHH
Confidence 88877777666655421100 0122222222333333333332233 45566778999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHh
Q psy11545 249 CHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~ 266 (337)
..+|+.+++.+.+.+.++
T Consensus 393 ~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 393 RQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988875
No 110
>PRK11043 putative transporter; Provisional
Probab=99.54 E-value=3.5e-13 Score=117.05 Aligned_cols=155 Identities=10% Similarity=-0.041 Sum_probs=113.1
Q ss_pred chhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 119 PVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
......|.+.++.+.+... ++......++..++.++.|+++||+|||+.+..+..+..++.+...+
T Consensus 24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------------- 90 (401)
T PRK11043 24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW------------- 90 (401)
T ss_pred HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH-------------
Confidence 3334445566777887555 78888889999999999999999999999999888877777666555
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (337)
..+.+..++...+.+.+.+ ...+....++.|.+|++.++...+..+....++..++|.+.+.+.+..||+..+++.+
T Consensus 91 --~~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~ 167 (401)
T PRK11043 91 --VESAAQLLVLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF 167 (401)
T ss_pred --hcCHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 1122222222222222222 2233445778899999988888898888889999999999999999999999888887
Q ss_pred HHHHHHHHHhhe
Q psy11545 278 CISLLGTIFFYV 289 (337)
Q Consensus 278 ~~~~~~~~~~~~ 289 (337)
++.++..+..+.
T Consensus 168 ~~~~~~~~~~~~ 179 (401)
T PRK11043 168 AITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHH
Confidence 777766555433
No 111
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.54 E-value=2.4e-13 Score=118.71 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=115.8
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.......|.+.++.+.+... ++......++..++.++.|+++||+|||+.+..+..+.+++.+.+......
T Consensus 34 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-------- 105 (417)
T PRK10489 34 GLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL-------- 105 (417)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--------
Confidence 34455667777777666444 888888999999999999999999999999988877776665554432111
Q ss_pred CCCcchhHHHHHHHHHH-HHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 197 KFPAFVSYLPVLMLMTF-TAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+....+....+. +.+.+.. .+....++.|..|+++|+++.++.+....+|..+++.+.+.+.+..+|++.+.+
T Consensus 106 ---~~~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 106 ---PEPSLLAIYLLGLWDGFFGSLG-VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 01222222222222 2222222 344467888999999999999999999999999999999999998899988877
Q ss_pred HHHHHHHHHHHhheeccCC
Q psy11545 276 YGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~ 294 (337)
.++..++..+. .+.+|++
T Consensus 182 ~~~~~~~~~~~-~~~l~~~ 199 (417)
T PRK10489 182 AAAGTFITLLP-LLRLPAL 199 (417)
T ss_pred HHHHHHHHHHH-HHhCCCC
Confidence 76666555443 4455654
No 112
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.53 E-value=4.5e-13 Score=119.30 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=96.6
Q ss_pred cchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 118 NPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 118 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
....++.|.+++. .|++... +.......++..++.++.|++.||+|+|+.+..+.++.+++.+.+.....
T Consensus 276 ~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-------- 347 (495)
T PRK14995 276 VGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-------- 347 (495)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 3445567777665 4777544 78888888999999999999999999999888887777666655443111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
....+.......+.+.+.+... +.....+.+..|++.++.+.++.++...+|+.+|+.+.+.+.+.
T Consensus 348 ----~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 348 ----STQQWQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred ----CCchHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222333333344444332 33356677889999999999999999999999999999988764
No 113
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.52 E-value=4.6e-13 Score=110.72 Aligned_cols=235 Identities=14% Similarity=0.184 Sum_probs=156.1
Q ss_pred cccchhhhh---HHHHHHHhhHHHHHHHHHhc-ccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q psy11545 4 EYSLGAFLS---WDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQE 79 (337)
Q Consensus 4 ~~~~~~~~~---Wr~~f~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (337)
++.+....+ ||....+..++.++..+..+ .+.|.|......+
T Consensus 159 ~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------------------- 204 (417)
T COG2223 159 APLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK---------------------------------- 204 (417)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc----------------------------------
Confidence 344444446 99999998888888666555 4777773210000
Q ss_pred hhhhhcHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHH
Q psy11545 80 TQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCI 157 (337)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~ 157 (337)
+......+..+++++.|...+ .++..+.++..+..+.|.++++ ++.+... +.......+.+.+..+.+|+
T Consensus 205 ---~~~~~~~~~v~~~~~~W~lsl-----lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~ 276 (417)
T COG2223 205 ---PQLPAQLKAVFSNKDTWLLSL-----LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGW 276 (417)
T ss_pred ---ccchhHHHHHhcCcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccch
Confidence 000023344555665554222 2223333455677788877765 4777444 67778888888889999999
Q ss_pred HhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccc
Q psy11545 158 MMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV 237 (337)
Q Consensus 158 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 237 (337)
++||+|.++.+......++++..+..+....... ..+....+..+.......+.+-..+ +.+++..+|. +
T Consensus 277 LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~ 346 (417)
T COG2223 277 LSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH--------GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-E 346 (417)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHcccccccc--------CcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-h
Confidence 9999999999999888888888777662211000 0223333343444444555554444 7888888886 5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-CccchHHHHHHHHHHHHHhhee
Q psy11545 238 RGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYVY 290 (337)
Q Consensus 238 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 290 (337)
-|.+.|+....+.+|++..|...+...+..| +...|+++..+.+++.+..+..
T Consensus 347 ~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 347 TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999888 5668888888888777765543
No 114
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.52 E-value=5.9e-13 Score=117.61 Aligned_cols=164 Identities=10% Similarity=0.077 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhcCccchhccchHH-HhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh-cCChhhHHHHhHHHHHH
Q psy11545 102 FVILMLYFLIYQFSGVNPVTFYAVNI-FKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVS 178 (337)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~ 178 (337)
+..++.......++ ++....+.+.+ .++.|++... .+....+.....+..+++|+++|| +|||+++..+.++.+++
T Consensus 16 ~~~~~~~~~~er~~-~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 16 FFMIFFVELWERFG-YYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 33333333333333 44444444444 4456777444 566666666677777899999999 99999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCcc--chhhhhhHHHHHHHHHHHHH
Q psy11545 179 MTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK--VRGIVGGLTTCACHFFIFLT 256 (337)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~ 256 (337)
.+.+.+. ......+.......+.......+...+++.|.+|++ .|+.++++.+...++|.+++
T Consensus 95 ~~~~~~~---------------~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 95 YFMTGMS---------------LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHh---------------ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 8877761 111122212222233333334456678999999887 45778999999999999999
Q ss_pred HHHhHHHHHhcCCccchHHHHHHHH
Q psy11545 257 VKSYNMFQTHLTKEGTFLMYGCISL 281 (337)
Q Consensus 257 ~~~~~~~~~~~g~~~~~~~~~~~~~ 281 (337)
|.+.+++.+..||++.|++.++..+
T Consensus 160 ~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 160 LSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHH
Confidence 9999999999999998888654333
No 115
>PRK10054 putative transporter; Provisional
Probab=99.52 E-value=5.2e-13 Score=115.46 Aligned_cols=135 Identities=9% Similarity=0.058 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
+.......+.........+++.||.++|+.+..++.+.+++...+.+. . .+.+...+....++.+.
T Consensus 247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~g~ 312 (395)
T PRK10054 247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--G------------NSLLLWGMSAAVFTVGE 312 (395)
T ss_pred HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--c------------hHHHHHHHHHHHHHHHH
Confidence 344444555555666788899999999998888877776666555431 0 12222222233333322
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhh
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
. ...|....++.+..|++.|+++.+..+ ..++|..++|.+.|.+.|..|....|.+.+.+..+..++..
T Consensus 313 ~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 313 I-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred H-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 2 223455678889999999999988755 67789999999999999999888777776666555555444
No 116
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.52 E-value=1.3e-13 Score=118.57 Aligned_cols=159 Identities=15% Similarity=0.099 Sum_probs=117.7
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
+......|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+.+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~----------- 88 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA----------- 88 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH-----------
Confidence 34566778888888988555 888999999999999999999999999999999998888888776651
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 276 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (337)
.+.+..++...+.+.+.+. ..+.....+.|.+| ++|+.+.++......+|..+++.+.+.+.+..||++.|++.
T Consensus 89 ----~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 89 ----DSLAALYLTYGLASAGVGI-AYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred ----HHHHHHHHHHHHHhHHHHH-HHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 1222222222222222222 22333456777777 56999999999999999888877878888888999999988
Q ss_pred HHHHHHHHHHhheeccC
Q psy11545 277 GCISLLGTIFFYVYLPE 293 (337)
Q Consensus 277 ~~~~~~~~~~~~~~~~e 293 (337)
++++++..+..+++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 163 GIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHHHHHHheec
Confidence 88877776665555544
No 117
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.51 E-value=1.7e-13 Score=121.74 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
++......++..++.++.|+++||+|||+.+..+.++..++.++....... ...+..++...+.+.+.
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~ 141 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA------------LSVEMLIVGRVLLGIGV 141 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHhhh
Confidence 788888999999999999999999999999999988888877766541111 11122333333333333
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHh---HHHHHhcCCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY---NMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
....+....++.|.+|+++|+.++++.+....+|..+++.+. +...+..+|++.|++.++..++.. +..+++||+
T Consensus 142 -~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~ 219 (481)
T TIGR00879 142 -GIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPES 219 (481)
T ss_pred -hHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 333455678999999999999999999999999999999888 555566789998888655555444 345567776
Q ss_pred C
Q psy11545 295 K 295 (337)
Q Consensus 295 ~ 295 (337)
.
T Consensus 220 ~ 220 (481)
T TIGR00879 220 P 220 (481)
T ss_pred h
Confidence 3
No 118
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.51 E-value=2.2e-12 Score=111.09 Aligned_cols=127 Identities=9% Similarity=0.055 Sum_probs=75.2
Q ss_pred hhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 120 VTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 120 ~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
...+.|.++.+ .|++... +.......++.+++.++.+++.||+|||+.+..+..+..+..+.+......
T Consensus 213 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--------- 283 (377)
T PRK11102 213 FLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL--------- 283 (377)
T ss_pred HHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 34455555544 5777444 777788888999999999999999999999888776654443333221111
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHH-HHHHHHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH-FFIFLTVKS 259 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~ 259 (337)
....+...+....+..+.+.. .+....+..|..| +.++.+.++.+.... ++..+++.+
T Consensus 284 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 284 --DLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred --hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 011222222222222222222 2233456677777 788999988876644 444554443
No 119
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.51 E-value=7.7e-13 Score=114.15 Aligned_cols=182 Identities=11% Similarity=0.087 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhcCccchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHH
Q psy11545 101 PFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVS 178 (337)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 178 (337)
+.+....+.+...+..+.......+.+-+ +.+++.++ ++..++..+++.++.+..|++.||+|.|+++.++.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444445555555555544 67888655 78888888899999899999999999999999998888877
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHH
Q psy11545 179 MTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVK 258 (337)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 258 (337)
.+..++.... ..+++..++....+.+..+. ..+.....+++++|+++||++.|+....+++|..+++.
T Consensus 114 ~~~~~~a~~~-----------~~~s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 114 CVWLGIAVQN-----------PNTPFGIFIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHcc-----------cCCCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 7766652111 01233333333333333333 34555788999999999999999998777788777766
Q ss_pred HhHHHH-----HhcC-------------CccchHHHHHHHHHHHHHhheeccCC
Q psy11545 259 SYNMFQ-----THLT-------------KEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 259 ~~~~~~-----~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
+.+.+. +..| ++.+.+++..+.++..++.+++.++.
T Consensus 182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 665543 3233 44455566666666665555555543
No 120
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.51 E-value=8.5e-13 Score=117.42 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=109.6
Q ss_pred ccchhccchHHHhhcCCCch--hHHH-----HHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHh
Q psy11545 117 VNPVTFYAVNIFKDAGAHVN--NNLA-----AVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFAT 189 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~--~~~~-----~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 189 (337)
...+.+..|.+-++...+.+ .... .....++..+|.++.|+++||+|||+++.++.++.+++.+++++....
T Consensus 32 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~- 110 (490)
T PRK10642 32 FGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSY- 110 (490)
T ss_pred HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccH-
Confidence 34444555665555533221 1211 345567788999999999999999999999999999999888772111
Q ss_pred cCCCCCCCCCcch-hH--HHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH--
Q psy11545 190 KDFWPEYKFPAFV-SY--LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ-- 264 (337)
Q Consensus 190 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-- 264 (337)
... .+ ..++...++.+....+..+....++.|.+|+++||...++......+|..+++.+...+.
T Consensus 111 ----------~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~ 180 (490)
T PRK10642 111 ----------ATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTI 180 (490)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 00 123333444444444445666789999999999999999988877778777776554433
Q ss_pred ------HhcCCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 265 ------THLTKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 265 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
...|||+.|++.+++.+++. +....+||+.
T Consensus 181 ~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp 216 (490)
T PRK10642 181 VGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETP 216 (490)
T ss_pred cCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCCh
Confidence 25799999988665555433 3345577753
No 121
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.50 E-value=1.2e-12 Score=113.13 Aligned_cols=149 Identities=14% Similarity=-0.028 Sum_probs=114.5
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.......|.+.++.+.+.++ ++..+...++..++.++.|+++||+|||+++..+..+.+++.+..++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~------------ 93 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL------------ 93 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH------------
Confidence 45667788888999998665 88888999999999999999999999999999999999999998887
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc-CCccchHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL-TKEGTFLM 275 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~ 275 (337)
..+.+..++ ..+..+.......+....++.+.+| ++|+.++++.......|..+++.+.+.+.+.. +|+..+.+
T Consensus 94 ---a~~~~~ll~-~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 94 ---YPQSALLLS-SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred ---CcchHHHHH-HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 122333333 3333333333334455677888887 77999999999999999999999999888875 78887766
Q ss_pred HHHHHHHH
Q psy11545 276 YGCISLLG 283 (337)
Q Consensus 276 ~~~~~~~~ 283 (337)
+++..++.
T Consensus 169 ~~~~~~~~ 176 (393)
T PRK09705 169 WALPAVVA 176 (393)
T ss_pred HHHHHHHH
Confidence 65554433
No 122
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.50 E-value=8.1e-13 Score=116.65 Aligned_cols=153 Identities=11% Similarity=0.027 Sum_probs=114.6
Q ss_pred ccchhccchHHHhh---cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh-cCChhhHHHHhHHHHHHHHHHHHHHHHhcC
Q psy11545 117 VNPVTFYAVNIFKD---AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATKD 191 (337)
Q Consensus 117 ~~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (337)
++....+.|.++.+ .|++... +.......++..++.+++|+++|| +|||+++.++.++.+++.+++.+
T Consensus 26 ~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~------- 98 (475)
T TIGR00924 26 YYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM------- 98 (475)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh-------
Confidence 55566667777654 5777544 788888889999999999999999 89999999999998888877665
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccc---hhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 192 FWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV---RGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
..+.+...+...+.+. ......+...++++|.+|++. |+.+.++.+...++|.++++.+.+.+.+..|
T Consensus 99 --------~~~~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 99 --------SIYPDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred --------cccHhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1122222222223222 222334555788889998754 8889999999999999999999999999899
Q ss_pred CccchHHHHHHHHHHHH
Q psy11545 269 KEGTFLMYGCISLLGTI 285 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~ 285 (337)
|+..|.+.++..+++.+
T Consensus 170 ~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 170 YHVGFNLAAVGMVIGLL 186 (475)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99988887765555443
No 123
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.49 E-value=4.9e-13 Score=98.00 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhcccc
Q psy11545 143 IMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYL 222 (337)
Q Consensus 143 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (337)
...++..++.++.+++.||+|||+.+..+.....++.+.+.. . .+.+.......+.+.+.+ ...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~g~~~~-~~~ 69 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL---S------------SNITVLIIARFLQGFGAA-FAL 69 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH---h------------ccHHHHHHHHHHHHHHHH-HHH
Confidence 345677889999999999999999998888777777665554 1 122333333333333222 334
Q ss_pred chhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 223 VVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 223 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
+....++.|.+|++.|+++.++.+....++..+++.+.+.+.+..+|+..+.+.+++.++..+..+++.||+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 555788999999999999999999999999999999999999888998888888887777776666666653
No 124
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.49 E-value=4.8e-12 Score=109.10 Aligned_cols=148 Identities=8% Similarity=0.000 Sum_probs=105.7
Q ss_pred hhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 120 VTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 120 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
...+.|.++++.|.+.+. +.......++.+++.++.|++.||+|+|+.+..+..+..++.+.... .
T Consensus 219 ~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~---~---------- 285 (381)
T PRK03633 219 LYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS---Q---------- 285 (381)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh---h----------
Confidence 334567777777777544 66677788889999999999999999999888777666655443221 1
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 278 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (337)
... .....+.+. ......|...+.+.|..|++.++.+.+..+...++|..++|.+.|++.+..|+.+.|.+.+.
T Consensus 286 ---~~~--~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~ 359 (381)
T PRK03633 286 ---AAM--APALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIAS 359 (381)
T ss_pred ---HHH--HHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 111 111122222 12233466677788999888888888888888899999999999999999999888888777
Q ss_pred HHHHHHHH
Q psy11545 279 ISLLGTIF 286 (337)
Q Consensus 279 ~~~~~~~~ 286 (337)
+.++..+.
T Consensus 360 ~~l~~~~~ 367 (381)
T PRK03633 360 VSFIYLLM 367 (381)
T ss_pred HHHHHHHH
Confidence 77655543
No 125
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.49 E-value=1.3e-12 Score=113.53 Aligned_cols=160 Identities=12% Similarity=-0.054 Sum_probs=111.2
Q ss_pred ccchhccchHH-HhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNI-FKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
........|.+ .++.|.+... ++......++..++.++.|+++||+|||+++..+.++.+++.+.+.......+.
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--- 107 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAW--- 107 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcc---
Confidence 33444555654 4567877555 888889999999999999999999999999999988877766555442221000
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
.......++...+..+.......+....+..|.+|+++|+++.++......+|..+++.+.+.+.+..||+..++
T Consensus 108 -----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 182 (399)
T PRK05122 108 -----PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGL 182 (399)
T ss_pred -----chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 001122222233333333333345556778899999999999999998889999999999999999999988776
Q ss_pred HHHHHHHHHH
Q psy11545 275 MYGCISLLGT 284 (337)
Q Consensus 275 ~~~~~~~~~~ 284 (337)
+.+++.++..
T Consensus 183 ~~~~~~~~~~ 192 (399)
T PRK05122 183 LIMLLALLGL 192 (399)
T ss_pred HHHHHHHHHH
Confidence 6655544433
No 126
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.49 E-value=9.6e-13 Score=114.24 Aligned_cols=163 Identities=11% Similarity=0.015 Sum_probs=108.0
Q ss_pred chhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 119 PVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
....+.+.+.++.|.+... ++......++..++.++.|+++||+|||+++..+..+.+++.+.+......
T Consensus 31 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~--------- 101 (402)
T TIGR00897 31 LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG--------- 101 (402)
T ss_pred hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3444666777888887555 888889999999999999999999999999999888887776544321111
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHH-HHHHHHhHHHHHhcCCccchHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFI-FLTVKSYNMFQTHLTKEGTFLMY 276 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~ 276 (337)
..++..+.......+.......+.....+.+.+|+++|++++|+.+....+|. .+++.+.+.+.+..|++..++..
T Consensus 102 ---~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~ 178 (402)
T TIGR00897 102 ---HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA 178 (402)
T ss_pred ---CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 12233222222222211111223335667788999999999999999999886 57888888888878866555544
Q ss_pred HHHHHHHHHHhheeccC
Q psy11545 277 GCISLLGTIFFYVYLPE 293 (337)
Q Consensus 277 ~~~~~~~~~~~~~~~~e 293 (337)
....++..++..++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 179 LAFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 43333333333343443
No 127
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.49 E-value=2.4e-12 Score=113.94 Aligned_cols=121 Identities=16% Similarity=0.062 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
........++.+++.++.++++||+|+|+.+.++..+.+++.+.+...... . ....+..++...+.+.+.
T Consensus 269 ~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~i~~~l~g~~~ 338 (473)
T PRK10429 269 PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-A---------PHNALLIVIAGILLNIGT 338 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-C---------chhHHHHHHHHHHHHHHH
Confidence 455555667888999999999999999999988877666555444321111 0 012222332223333333
Q ss_pred hccccchhhhhhcccCC-------ccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC
Q psy11545 218 TIGYLVVPWVMIGEVYP-------TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 269 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (337)
+. ..+..+++++|..+ .+..|..+|....+..++..+++.+.|.+.+..|+
T Consensus 339 ~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 339 AL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 32 33555788888855 33346688999999999999999999999987776
No 128
>KOG2615|consensus
Probab=99.49 E-value=1.8e-13 Score=111.22 Aligned_cols=143 Identities=19% Similarity=0.167 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
+.....+++.++++++.+|.++|++|||+++.++++..++...+.+. +.+. ..+....+.++.
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----------------S~~F-~afv~aR~l~Gi 133 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----------------SRNF-AAFVLARFLGGI 133 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------------HHHH-HHHHHHHHhhhh
Confidence 67778889999999999999999999999999999998887777666 2334 344443344444
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH---hcCCccchH---HHHHHHHHHHHHhheec
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT---HLTKEGTFL---MYGCISLLGTIFFYVYL 291 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~---~~~~~~~~~~~~~~~~~ 291 (337)
.-+...++.++++|+++++.|+.+++..+....+|-++||.+++++.. ..|....++ +..++......+..+++
T Consensus 134 ~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~l 213 (451)
T KOG2615|consen 134 FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFL 213 (451)
T ss_pred ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 445556678999999999999999999999999999999999999887 334332222 11112222123345678
Q ss_pred cCCCCC
Q psy11545 292 PETKNK 297 (337)
Q Consensus 292 ~e~~~~ 297 (337)
|||-+.
T Consensus 214 pETL~~ 219 (451)
T KOG2615|consen 214 PETLPL 219 (451)
T ss_pred Cccccc
Confidence 998543
No 129
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.49 E-value=1.1e-12 Score=111.78 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=120.6
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.+.+... +.......++..++.++.|+++||+|||+.+..+..+..++.+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~----------- 83 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF----------- 83 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH-----------
Confidence 455666778888888877555 78888899999999999999999999999999999888888877666
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+...........+.......+....+..|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+.+
T Consensus 84 -----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 84 -----ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred -----hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 122233333333333333334556678999999999999999999999999999999999999998889988888
Q ss_pred HHHHHHHHHHH
Q psy11545 276 YGCISLLGTIF 286 (337)
Q Consensus 276 ~~~~~~~~~~~ 286 (337)
.+++.++..+.
T Consensus 159 ~~~~~~~~~~~ 169 (352)
T cd06174 159 LAILGLLLALL 169 (352)
T ss_pred HHHHHHHHHHH
Confidence 77776665544
No 130
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.49 E-value=1.6e-12 Score=113.90 Aligned_cols=169 Identities=12% Similarity=-0.041 Sum_probs=108.0
Q ss_pred ccchhccchHHHhhcC---CCchh-H---HHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHh
Q psy11545 117 VNPVTFYAVNIFKDAG---AHVNN-N---LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFAT 189 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g---~~~~~-~---~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 189 (337)
...+....|.+.++.+ .+..+ . .......++..+|++++|+++||+|||+.+..+.++.+++.+..++....
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~- 116 (432)
T PRK10406 38 FYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGY- 116 (432)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCc-
Confidence 4445666677767653 22221 1 22334455566999999999999999999999999998888887761100
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH-----
Q psy11545 190 KDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ----- 264 (337)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----- 264 (337)
.. . .......++...+..+....+..+...+++.|.+|+++|+.+.++.......|..+++.+...+.
T Consensus 117 ~~--~-----~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 189 (432)
T PRK10406 117 ET--I-----GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLED 189 (432)
T ss_pred hh--H-----HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 00 0 00111223333334443333445677899999999999999998888777777777766544433
Q ss_pred ---HhcCCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 265 ---THLTKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 265 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
+..|||..|++.++..++... .....||+
T Consensus 190 ~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~ 221 (432)
T PRK10406 190 AELREWGWRIPFALGAVLAVVALW-LRRQLDET 221 (432)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence 257999999887766665433 23445664
No 131
>PRK12382 putative transporter; Provisional
Probab=99.49 E-value=1.3e-12 Score=113.05 Aligned_cols=154 Identities=10% Similarity=-0.032 Sum_probs=104.8
Q ss_pred cchhccchHH-HhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 118 NPVTFYAVNI-FKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 118 ~~~~~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
.......|.+ .++.|.+... ++..+...++..++.++.|+++||+|||+.+..+.+...++.+........+..
T Consensus 32 ~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---- 107 (392)
T PRK12382 32 GLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS---- 107 (392)
T ss_pred HHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc----
Confidence 3334455544 4567887555 888899999999999999999999999999998887766654433221111000
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
...+...+.......+.......+...+++.|.+|+++|++++++......++..++|.+.+.+.+..||+..+.+
T Consensus 108 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 108 ----APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0122223333333333222223344457788999999999999999999999999999999999888898865554
Q ss_pred HHHH
Q psy11545 276 YGCI 279 (337)
Q Consensus 276 ~~~~ 279 (337)
..+.
T Consensus 184 ~~~~ 187 (392)
T PRK12382 184 TMVL 187 (392)
T ss_pred HHHH
Confidence 4433
No 132
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.48 E-value=3.6e-12 Score=110.45 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=90.8
Q ss_pred hccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhh-hcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 121 TFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMK-KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 121 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
..+.|.+.++.+.+... +......++....+....++..| |++.++.+..+.++.+++.+.+.. .
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~---~---------- 294 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM---V---------- 294 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---h----------
Confidence 34567777776444333 55555555555555555555554 566566666666666665554443 1
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC---C-ccchH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT---K-EGTFL 274 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~-~~~~~ 274 (337)
.+.+.......++..+.+. ..+...+++.|..|++.||+++|+.+....+|..++|.+.|.+.+..+ . ...+.
T Consensus 295 --~~~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~ 371 (400)
T PRK11646 295 --SNLQQLFTLICLFYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWM 371 (400)
T ss_pred --hhHHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHH
Confidence 1222222222223332222 234446788899999999999999999999999999999999998743 2 33444
Q ss_pred HHHHHHHHHHHH
Q psy11545 275 MYGCISLLGTIF 286 (337)
Q Consensus 275 ~~~~~~~~~~~~ 286 (337)
..+++++++.+.
T Consensus 372 ~~~~~~~~~~~~ 383 (400)
T PRK11646 372 MLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHHH
Confidence 445555544433
No 133
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.47 E-value=1.9e-12 Score=111.83 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=111.0
Q ss_pred ccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11545 122 FYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPA 200 (337)
Q Consensus 122 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
...+.+..+.+.+... ++....+.+...+..+++|+++||+|||+++..+..+.+++.+.+.+ .
T Consensus 24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~---~------------ 88 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF---G------------ 88 (393)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH---H------------
Confidence 3344556677766444 78888888999999999999999999999999999888777665544 1
Q ss_pred chhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHH
Q psy11545 201 FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCIS 280 (337)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 280 (337)
... ++ ..+..+.......|...+++.|++|+++|+++.|+.+....++..++|.+.+.+.+. .|+..+.+.+.+.
T Consensus 89 -~~~--~~-~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~ 163 (393)
T PRK11195 89 -IHP--LL-AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY 163 (393)
T ss_pred -HHH--HH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 111 22 223334444455677789999999999999999999999999999999999999885 3554555444443
Q ss_pred HHHHHHhheeccCCC
Q psy11545 281 LLGTIFFYVYLPETK 295 (337)
Q Consensus 281 ~~~~~~~~~~~~e~~ 295 (337)
+++. +..+.+||.+
T Consensus 164 ~~~~-~~~~~l~~~~ 177 (393)
T PRK11195 164 LLAA-LFNLFIPRLG 177 (393)
T ss_pred HHHH-HHHhcCCCCc
Confidence 3333 3345667653
No 134
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.46 E-value=8.2e-12 Score=109.17 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=117.3
Q ss_pred ccchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh--hhHHHHhHHHHHHHHHHHHHHHHhcCC
Q psy11545 117 VNPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR--SLTFISSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 117 ~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
.+.+......+.. +.|++... .....+..+..++|+++.|++.||+|.| +++.++.++..+..+. ++....+...
T Consensus 297 ~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~-g~~G~~~~~~ 375 (477)
T PF11700_consen 297 VNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY-GLFGFWPSFF 375 (477)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HHHHhhhccc
Confidence 4444444444444 56888555 6777788999999999999999999999 7777666555333322 2211110000
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-Ccc
Q psy11545 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEG 271 (337)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~ 271 (337)
...+.+...+ +....+.+..+..+..-++.+|+.|+++.+.-+|+....+...+++||.+.+.+.+..| .|.
T Consensus 376 ------g~~~~~~f~~-~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~ 448 (477)
T PF11700_consen 376 ------GLKSPWEFWV-LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY 448 (477)
T ss_pred ------CcccHHHHHH-HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 0123333333 33333444445567778999999999999999999999999999999999999999887 667
Q ss_pred chHHHHHHHHHHHHHhheeccCCCCC
Q psy11545 272 TFLMYGCISLLGTIFFYVYLPETKNK 297 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~e~~~~ 297 (337)
.+....++.+++.++. ..++..|++
T Consensus 449 g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 449 GFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHHHHH-hhccchhhh
Confidence 7777777777776654 445555443
No 135
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.46 E-value=1.3e-11 Score=105.94 Aligned_cols=187 Identities=12% Similarity=0.124 Sum_probs=124.6
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcC-CCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG-AHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
+..+++++|+...-++........ ......|.+.++++.| .+.+. +....+..+++++.....+++..|+|.|
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~~~~-----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~ 273 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLIGIS-----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK 273 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 445788888765433333222221 3445566677788887 55333 5566777889999999999999999999
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHH----HHHHHHhccccchhhhhhcccCCccchhhh
Q psy11545 166 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLM----TFTAASTIGYLVVPWVMIGEVYPTKVRGIV 241 (337)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 241 (337)
+++.++.+..++-..+++... .+.+....... ..+..++... .....|+.+..|++.|+++
T Consensus 274 ~ll~~a~~~~~vR~~l~a~~~--------------~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~ 338 (400)
T PF03825_consen 274 WLLLLALVAYAVRWLLYAYFS--------------DPWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATA 338 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------CCcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHH
Confidence 999999988888877776610 12222222222 2333333332 3446899999999999999
Q ss_pred hhHHHHH-HHHHHHHHHHHhHHHHHhcCCccc------hHHHHHHHHHHHHHhheeccCC
Q psy11545 242 GGLTTCA-CHFFIFLTVKSYNMFQTHLTKEGT------FLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 242 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
.++.+.. ..+|..++..+.|++.+..|.+.. +.+.+++.++..++.+++.||+
T Consensus 339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9998865 578999999999999998876543 3444444444444444444543
No 136
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.1e-11 Score=105.83 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=108.7
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChh
Q psy11545 87 KETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 166 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 166 (337)
.++...++||+++...+..++.....+.. .....+|..+.+.+. +............+.+++.++...+++|+|+|+
T Consensus 227 ~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~-~s~~~yy~~y~lg~~--~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~ 303 (467)
T COG2211 227 DSFLLIFKNRPLLLLLLMNLLLFIAFNIR-GSIMVYYVTYVLGDP--ELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK 303 (467)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHH-hhhhheeEEEEcCCh--HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH
Confidence 34555777877665555333333333332 333344444433222 112245555566666777999999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC-------ccchh
Q psy11545 167 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------TKVRG 239 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~ 239 (337)
++.++.++.+++.+.+.+... .+....++..++...+.+ ...++.|++++|..+ .+.-|
T Consensus 304 ~~~~~~~~~~i~~~~~~f~~~-------------~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 304 LFLIGLLLLAVGYLLLYFTPA-------------GSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-------------cchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchh
Confidence 999999888888887776220 123333333344444444 446788999998853 33447
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHhcCCc
Q psy11545 240 IVGGLTTCACHFFIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (337)
...|...++..+|.+++..+.++.++..|+.
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8889999999999999999999999887763
No 137
>TIGR00898 2A0119 cation transport protein.
Probab=99.46 E-value=7.6e-13 Score=118.49 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=115.9
Q ss_pred ccchHHHhhcCCC---chh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 122 FYAVNIFKDAGAH---VNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 122 ~~~~~~~~~~g~~---~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
.+.+.+..+.+++ ... ++..+...++.+++.++.|+++||+|||++++++.++.+++.++.++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~------------- 176 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF------------- 176 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-------------
Confidence 3456666777775 333 78888899999999999999999999999999998888887776665
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (337)
..+...++...++.+....+..+...+++.|.+|++.|+.+.++......+|.++++.+...+.+ |++.+++.+
T Consensus 177 ---~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~ 250 (505)
T TIGR00898 177 ---SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVS 250 (505)
T ss_pred ---cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 23333444444444444444467778999999999999999999988888888888877655443 888888888
Q ss_pred HHHHHHHHHhheeccCCC
Q psy11545 278 CISLLGTIFFYVYLPETK 295 (337)
Q Consensus 278 ~~~~~~~~~~~~~~~e~~ 295 (337)
+..++..+.. +++||+.
T Consensus 251 i~~~~~~~~~-~~~~esp 267 (505)
T TIGR00898 251 LPTFLFFLLS-WFVPESP 267 (505)
T ss_pred HHHHHHHHHH-HhcCCCh
Confidence 7777666554 5678863
No 138
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.46 E-value=1.8e-12 Score=111.50 Aligned_cols=159 Identities=11% Similarity=0.025 Sum_probs=108.1
Q ss_pred hccchHHH-hhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHH-HhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 121 TFYAVNIF-KDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFI-SSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 121 ~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
....|.++ ++.|.+... ++......+...+..++.|+++||+|||+.++. +.....++.+++..
T Consensus 17 ~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------------- 83 (375)
T TIGR00899 17 FPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW------------- 83 (375)
T ss_pred hhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh-------------
Confidence 34444444 566877544 777788888889999999999999999887654 44444444444444
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhh--hhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV--GGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
.+++..+.......+.......|....+..|..|++.|+.+ .+.......+|..+++.+.+.+.+..||+..|++
T Consensus 84 ---~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~ 160 (375)
T TIGR00899 84 ---NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT 160 (375)
T ss_pred ---cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence 12233332222333333333455556777888887766654 5777777889999999999999998999999999
Q ss_pred HHHHHHHHHHHhheeccCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~ 295 (337)
.+++.++..++.++++||.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 88877777666666677754
No 139
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.45 E-value=8.4e-12 Score=106.28 Aligned_cols=160 Identities=9% Similarity=0.055 Sum_probs=118.6
Q ss_pred ccchhccchHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN--NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
-....+..|++.++.|++..+ +........+..++.+++|+++||+|-|+++.++.+...+..++.++
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f---------- 111 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL---------- 111 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH----------
Confidence 345666778888889998444 78888899999999999999999999999999999999888888877
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
......+.+..++.+....+.. ..+.++..++|+++|+++.|+.+....+|.++++.+.+. ...+||+....
T Consensus 112 ------a~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~ 183 (511)
T TIGR00806 112 ------GTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST 183 (511)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence 1233333333333333333333 557899999999999999999999999999999999999 55679986433
Q ss_pred H--HHHHHHHHHHHhheeccCC
Q psy11545 275 M--YGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 275 ~--~~~~~~~~~~~~~~~~~e~ 294 (337)
. +...+.+..++..+++|..
T Consensus 184 Ln~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 184 LNIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 2 2223333333445667743
No 140
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.45 E-value=4e-12 Score=108.64 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=78.6
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHH-HHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMG-IVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|.++.+.|++.+. +......+ ++.+++.+++++++||+|||+.+..+.++.++....+.+.... .+..
T Consensus 225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 302 (356)
T TIGR00901 225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASN--GHHD 302 (356)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--Cccc
Confidence 334455667777777777544 44444444 5778999999999999999999888887776655544432111 0000
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 250 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 250 (337)
.. +....+.......+...+.+ ...+...++..|.+|+++||+.+|+.+...+
T Consensus 303 ~~--~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 303 GI--TFPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cc--ccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 00 00111222222222223223 3345557999999999999999999887654
No 141
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.44 E-value=1.4e-11 Score=108.85 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=112.4
Q ss_pred hccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 121 TFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 121 ~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
....|.+.++ .+.+... ++.....+++.++|+++.+++.+++++++++..+.++.+++.+.+++
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal-------------- 303 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL-------------- 303 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc--------------
Confidence 3446766654 4665444 78888999999999999999999999998888888887777776666
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 278 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (337)
..+.+...+.+++.+.+... ......+...+..|++.||+++++..+....+..+|..+.|.+.+..|.+..+.+.++
T Consensus 304 -~~~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~ 381 (524)
T PF05977_consen 304 -SPSFWLALIALFLAGAAWII-ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGA 381 (524)
T ss_pred -chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 12333333333333333332 3334467888999999999999999999999999999999999999999888777666
Q ss_pred HHHHHHHHh
Q psy11545 279 ISLLGTIFF 287 (337)
Q Consensus 279 ~~~~~~~~~ 287 (337)
..+++.++.
T Consensus 382 ~lll~~~~~ 390 (524)
T PF05977_consen 382 ALLLSALIA 390 (524)
T ss_pred HHHHHHHHH
Confidence 555555443
No 142
>PRK09952 shikimate transporter; Provisional
Probab=99.44 E-value=5.4e-12 Score=110.70 Aligned_cols=139 Identities=11% Similarity=0.079 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchh---HHHHHHHHHHHHHHhcc
Q psy11545 144 MGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVS---YLPVLMLMTFTAASTIG 220 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 220 (337)
..++..+++++.|+++||+|||+.+..+..+.+++.+++++.... .... ...++...+..+....+
T Consensus 73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~R~l~G~~~g~ 141 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSF-----------STIGWWAPVLLVTLRAIQGFAVGG 141 (438)
T ss_pred HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445567888999999999999999999999999888887771110 0000 11233333333333334
Q ss_pred ccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH--------hcCCccchHHHHHHHHHHHHHhheecc
Q psy11545 221 YLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT--------HLTKEGTFLMYGCISLLGTIFFYVYLP 292 (337)
Q Consensus 221 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 292 (337)
..+....++.|.+|+++|+...+..+....+|..+++.+...+.. ..|||..|++.++..++.. ......|
T Consensus 142 ~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~~ 220 (438)
T PRK09952 142 EWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGME 220 (438)
T ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhCC
Confidence 445557899999999999999999888888888888776665542 4799998887766554432 2223345
Q ss_pred CC
Q psy11545 293 ET 294 (337)
Q Consensus 293 e~ 294 (337)
|+
T Consensus 221 es 222 (438)
T PRK09952 221 ES 222 (438)
T ss_pred CC
Confidence 54
No 143
>PRK15075 citrate-proton symporter; Provisional
Probab=99.44 E-value=4.8e-12 Score=111.01 Aligned_cols=161 Identities=14% Similarity=0.014 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-H-HHHHH-----HHHHHHHHHHHHHHHhhhcCChhhHHHHhHHH
Q psy11545 103 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-N-LAAVI-----MGIVRLIFTIASCIMMKKMGRRSLTFISSIGC 175 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~-----~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 175 (337)
....++..+........+....|.+.++.+.+..+ . +.... ..+...++.++.|+++||+|||+.++.+..+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 33344444444444666788889988888775333 2 22211 12333568899999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhH-------HHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHH
Q psy11545 176 GVSMTGLGLYIFATKDFWPEYKFPAFVSY-------LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 248 (337)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 248 (337)
.++.+++++. .+.. ..++...+..+.......+....+++|++|+++|++++++....
T Consensus 97 ~~~~~l~~~~---------------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~ 161 (434)
T PRK15075 97 ASGTLLIAFV---------------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSAS 161 (434)
T ss_pred HHHHHHHHhC---------------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHH
Confidence 8888877761 1111 01222222322222223444568999999999999999999988
Q ss_pred HHHHHHHHHHHhHHH--------HHhcCCccchHHHHH
Q psy11545 249 CHFFIFLTVKSYNMF--------QTHLTKEGTFLMYGC 278 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~ 278 (337)
.+++..+++.+.+.+ .+..||+++|++.+.
T Consensus 162 ~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 162 QQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 888877777766654 346799988876443
No 144
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.44 E-value=1.6e-12 Score=109.61 Aligned_cols=188 Identities=12% Similarity=0.118 Sum_probs=128.5
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc----CCCchh-HHHHHHHHHHHHHHHHHHHHHhhh
Q psy11545 87 KETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA----GAHVNN-NLAAVIMGIVRLIFTIASCIMMKK 161 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~ 161 (337)
++..+.+++|+.|.-.+........ +..+-...+.++... +.+... +...++..+.+++...+.+++.+|
T Consensus 211 ~~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r 285 (412)
T PF01306_consen 211 KDVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR 285 (412)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888777644444443333 233332334444333 222222 566777788899999999999999
Q ss_pred cCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhh
Q psy11545 162 MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 241 (337)
Q Consensus 162 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 241 (337)
+|.|+.++++..++++-.+.+++ ..+.+.....=.+-+.-......+ ..-|+++.+|++..++.
T Consensus 286 ig~k~~Lllag~i~~iRi~~~~~---------------~~~~~~i~~~klLH~~e~~l~lva-~fkYI~~~fd~rlsAt~ 349 (412)
T PF01306_consen 286 IGAKNLLLLAGVIMAIRIIGSGF---------------ATNPWVISLIKLLHALEFPLLLVA-AFKYITAHFDKRLSATL 349 (412)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHT-----------------SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHS-GGGHHHH
T ss_pred cChHhHHHHHHHHHHHHHHHHhh---------------hcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHhHHHHH
Confidence 99999999999999888887776 233443333333334333333333 36899999999999998
Q ss_pred hhHH-HHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 242 GGLT-TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
..+. +...+++.++.+.+.|.+.|+.|.+.+|++.+.+.+...++..+.+++.+
T Consensus 350 y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 350 YLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 8885 57788999999999999999999998999999888877777766665443
No 145
>PRK09669 putative symporter YagG; Provisional
Probab=99.43 E-value=1.7e-11 Score=107.80 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=97.0
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChh
Q psy11545 87 KETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 166 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 166 (337)
.+.++.++++.++......++........ .....+|..+.+ +.............+..+++.+++++++||+|+|+
T Consensus 220 ~~~~~~~~n~~~~~l~~~~~~~~~~~~~~-~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~ 295 (444)
T PRK09669 220 KDLKLLLGNSQWRIMFIFNVVLLTAVVTR-GGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR 295 (444)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHH-hhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 44556677776655433333322222221 112223333222 11111234444556777888899999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC-------ccchh
Q psy11545 167 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------TKVRG 239 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~ 239 (337)
.+..+.++.++..+.+.+ .. ..+.+..++...+.+.+.+ ...+..+++++|..+ .+..|
T Consensus 296 ~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g 361 (444)
T PRK09669 296 AFKWTIVAFVILSALIFF--IP-----------PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDG 361 (444)
T ss_pred HHHHHHHHHHHHHHHHHH--hC-----------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcch
Confidence 988877655543332222 11 1122223333333333333 344667888888875 23346
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHhcCCc
Q psy11545 240 IVGGLTTCACHFFIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (337)
...|+.+.+..+|..+++.+.+.+.+..|+.
T Consensus 362 ~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 362 LVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7788999999999999999999999988773
No 146
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.43 E-value=6.4e-12 Score=108.96 Aligned_cols=156 Identities=11% Similarity=-0.003 Sum_probs=113.6
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.......|.+.++.+.+... ++......++..++++..|++.||+|||+.+..+..+.+++.+++......
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~-------- 91 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI-------- 91 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 34456668888888888555 888899999999999999999999999999999999988887665432111
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh----------
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH---------- 266 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 266 (337)
.+.+..+....+.+.+.+.. .+....++.+..|++.|++..++.+....+|..+++.+.+.+...
T Consensus 92 ----~~~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 92 ----MNYTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred ----ccHHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 12222333333333333332 334467788888999999999999999999999999998877532
Q ss_pred ----------------cCCccchHHHHHHHHHHHHH
Q psy11545 267 ----------------LTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 267 ----------------~g~~~~~~~~~~~~~~~~~~ 286 (337)
.+|+.+|.+.+++.++..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888887766655443
No 147
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.43 E-value=5e-12 Score=124.19 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=97.8
Q ss_pred hccchHHHh-hcCCCch-h-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 121 TFYAVNIFK-DAGAHVN-N-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 121 ~~~~~~~~~-~~g~~~~-~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
..+.|.++. ..|++.. . ++.....+++.+++.++.++++||+++++.+.++.++.+++.+++.+
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~------------- 318 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT------------- 318 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH-------------
Confidence 344455554 4577755 4 77778888899999999999999999998888777777666655544
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh-cCCccchHHH
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMY 276 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 276 (337)
..+.+..++..++++.+.+.. .+...+++.+..|++.||+++|+.+++..++.++++.+.+.+... .++...+++.
T Consensus 319 --~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~ 395 (1146)
T PRK08633 319 --APSLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLI 395 (1146)
T ss_pred --hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 112233333333333333333 334478888999999999999999999999988877776655431 2233344444
Q ss_pred HHHHHHHHH
Q psy11545 277 GCISLLGTI 285 (337)
Q Consensus 277 ~~~~~~~~~ 285 (337)
+.+.++..+
T Consensus 396 ~~~~~~~~~ 404 (1146)
T PRK08633 396 ALVTLIGTL 404 (1146)
T ss_pred HHHHHHHHH
Confidence 444444333
No 148
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.43 E-value=2.6e-11 Score=104.88 Aligned_cols=147 Identities=10% Similarity=0.029 Sum_probs=93.8
Q ss_pred hHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcch
Q psy11545 125 VNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFV 202 (337)
Q Consensus 125 ~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (337)
+.+.++ .|.+... +......+++.++++++.+++.||.++|+.+..+.. .++..+.+.. . .+
T Consensus 229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~---~------------~~ 292 (393)
T PRK11195 229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL---Q------------HS 292 (393)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH---H------------hH
Confidence 333433 4666444 777888889999999999999999998887776643 3332222222 1 12
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhcccCCccc-hhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHH
Q psy11545 203 SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV-RGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISL 281 (337)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 281 (337)
.+.......+.+.+.+....+ ..+...|..|++. +|.+.++.+...+++..++..+.+.+ +..|.+..+.+.+...+
T Consensus 293 ~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 293 LLPAYPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHHHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 222223333333333333333 3566677766654 79999999999999999999998854 66788877776655555
Q ss_pred HHHHHhhe
Q psy11545 282 LGTIFFYV 289 (337)
Q Consensus 282 ~~~~~~~~ 289 (337)
++..+.+.
T Consensus 371 ~~~~~~~~ 378 (393)
T PRK11195 371 VALAMALL 378 (393)
T ss_pred HHHHHHHH
Confidence 55544433
No 149
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.43 E-value=4.9e-12 Score=123.94 Aligned_cols=236 Identities=11% Similarity=0.038 Sum_probs=130.7
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 89 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
..+||+.|++.++.+++.+++.+++|+++. .+.+.+. . . .. .+.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~------------~-~~--------------~~~~~~~~ 218 (1140)
T PRK06814 170 SGNFVILVALLMGIAVLGWLASLFIPKTGN---AAPDLKI-D------------R-NI--------------IRSTITLL 218 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCee-c------------c-ch--------------HHHHHHHH
Confidence 349999996666666666666667877642 0000000 0 0 00 00011234
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
....+++..+...+...+..+. ...+..+.|.++.+ .|.+... +...+..+++.++|.++.|+++|+.++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~ 293 (1140)
T PRK06814 219 KYAKADKRIWLAILGISWFWLV-----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY 293 (1140)
T ss_pred HHHhcCchHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee
Confidence 4455555444433322222221 23344466776665 4776444 778888899999999999999988877776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCCCCC-----CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhh
Q psy11545 168 TFISSIGCGVSMTGLGLYIFATKDFWPEYK-----FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVG 242 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 242 (337)
+..+.++.+++.+.+.+............. ....+.+..++..++++.+.+.. .+...+++.+..|++.||+++
T Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v~ 372 (1140)
T PRK06814 294 VPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLY-IVPLFAALQAWANPAHRARVI 372 (1140)
T ss_pred ehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHh-HHHHHHHHHhhCCcccceeee
Confidence 665555554444433321000000000000 00012333333333343333333 334478899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHh-cCCccchHHHHHHHHH
Q psy11545 243 GLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMYGCISLL 282 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 282 (337)
|+.+++..++..+++.+.+.+.+. .+....+++.+++.++
T Consensus 373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999999888743 3444444444443333
No 150
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.42 E-value=1.4e-11 Score=102.63 Aligned_cols=141 Identities=9% Similarity=0.034 Sum_probs=96.4
Q ss_pred cchhccchHHHhh---cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCC
Q psy11545 118 NPVTFYAVNIFKD---AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFW 193 (337)
Q Consensus 118 ~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
.....|.+.++.+ .|++.+. .........+.++|.++.++++||+|+|+.+.++..+.+++.++... .
T Consensus 157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~---~----- 228 (310)
T TIGR01272 157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL---T----- 228 (310)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH---c-----
Confidence 3455666777764 3666444 77788888899999999999999999999888777766665543333 1
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccch
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTF 273 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (337)
+.......+...+.+.+ ...|...+...+.+|++ .+++.++. ....+|+++.|.+.|.+.|..|.+.++
T Consensus 229 --------~~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~ 297 (310)
T TIGR01272 229 --------HGYVAMWFVLALGLFNS-IMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAF 297 (310)
T ss_pred --------CCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence 11222223333333333 33566577777877754 46667775 567799999999999999988887776
Q ss_pred HHHH
Q psy11545 274 LMYG 277 (337)
Q Consensus 274 ~~~~ 277 (337)
++..
T Consensus 298 ~v~~ 301 (310)
T TIGR01272 298 ALPV 301 (310)
T ss_pred HHHH
Confidence 6433
No 151
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.42 E-value=8.6e-12 Score=106.54 Aligned_cols=135 Identities=10% Similarity=0.090 Sum_probs=90.8
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-CChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
.....+.|.++++.|.+... +.......++.+++.++.|++.||+ +||+.+.++..+.+++.+.+.+ .
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~------- 283 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF---A------- 283 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH---h-------
Confidence 34556778888888887544 7778888999999999999999999 5666666666666666554443 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcc-cCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGE-VYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 269 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (337)
....... ...+++.+.+ ...+...+.+.+ ..+++.++...++.+...+++..++|.+.|.+.+..|.
T Consensus 284 -----~~~~~~~-~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 284 -----PMHGLWA-WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred -----hhhHHHH-HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111111 1222332222 223343444444 34456778999999999999999999999999998763
No 152
>PRK11462 putative transporter; Provisional
Probab=99.42 E-value=2.4e-11 Score=106.98 Aligned_cols=118 Identities=9% Similarity=-0.032 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
........++.+++.+++++++||+|+|+.+..+..+.++..+++.+ .+ ........+...+.+.+.
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~l~g~~~ 332 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF---VP----------MQASITMFVFIFVIGVLH 332 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---hc----------hhHHHHHHHHHHHHHHHH
Confidence 44556677888899999999999999998876554443333332222 10 011222222222222222
Q ss_pred hccccchhhhhhcccCC-----ccch--hhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC
Q psy11545 218 TIGYLVVPWVMIGEVYP-----TKVR--GIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 269 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (337)
....++.+++.+|..+ +..| |...+.......+|..+++.+.+.+.+..|+
T Consensus 333 -~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 333 -QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred -HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2334455667777655 2234 5555676789999999999999999887666
No 153
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.42 E-value=2.1e-11 Score=106.70 Aligned_cols=205 Identities=10% Similarity=0.128 Sum_probs=131.2
Q ss_pred hHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
+|++...+.+++.++..+..++ ++|.++ +.+ +++++.+-+..++
T Consensus 175 ~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~-----------------------------~~~~~~~~~~~~~ 219 (428)
T PF13347_consen 175 GYRWMALVLAIVGLVFFLITFFFVKERSV------EVT-----------------------------EQEKKISLRDSLR 219 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccc------ccc-----------------------------ccccccccccchh
Confidence 6888888888888776665554 777210 000 0001222334556
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHH
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF 169 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 169 (337)
+.+++|++++......+.... ........+++.+.. +.+...........++.+++.++.++++||+|+|+.+.
T Consensus 220 ~~~~nr~~~~l~~~~~~~~~~-----~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~ 294 (428)
T PF13347_consen 220 SLFRNRPFRILLLAFFLQWLA-----FALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI 294 (428)
T ss_pred hhcccchHHHHHHHHHHHHhh-----hhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh
Confidence 677777655433333322222 222333334444443 33323366667788889999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCc-------cchhhhh
Q psy11545 170 ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT-------KVRGIVG 242 (337)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~ 242 (337)
.+..+.+++.+.+.+... .+.+..++...+.+.+.+ ......+++.+|+.+. +..|..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~ 360 (428)
T PF13347_consen 295 IGLLLAALGFLLLFFLGP-------------GSPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYF 360 (428)
T ss_pred hhHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHH
Confidence 999998888877665221 133444444444444444 3446668899998763 3458899
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhcCCc
Q psy11545 243 GLTTCACHFFIFLTVKSYNMFQTHLTKE 270 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (337)
|+.++...++..+++.+.+.+.+..|+.
T Consensus 361 s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 361 SVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999998877664
No 154
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.7e-12 Score=105.45 Aligned_cols=162 Identities=13% Similarity=0.128 Sum_probs=126.1
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
++.+....+.+-++.+++.++ .++..+..+.+.+..++.|.+.||+|.|+....+.++..+-++..++....
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~------- 102 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY------- 102 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC-------
Confidence 555555666666788998766 899999999999999999999999999999999999888888777763222
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC---Cccc
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT---KEGT 272 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~ 272 (337)
.++..++...++.+ .+.+...+...++++.||++++|.+.|+.. .+++|..+...+.+.+....| |+..
T Consensus 103 ------~~~~~ll~~gll~G-~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~ 174 (417)
T COG2223 103 ------PSTWQLLVIGLLLG-LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNV 174 (417)
T ss_pred ------CchHHHHHHHHHHh-cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 22233333333333 333334566789999999999999999999 999999999999999999999 8888
Q ss_pred hHHHHHHHHHHHHHhheeccC
Q psy11545 273 FLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~e 293 (337)
..++....++..+..++...+
T Consensus 175 ~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 175 AGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 888888777777766666543
No 155
>PRK10133 L-fucose transporter; Provisional
Probab=99.41 E-value=2.2e-11 Score=106.61 Aligned_cols=141 Identities=6% Similarity=-0.082 Sum_probs=95.1
Q ss_pred cchHH-Hhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11545 123 YAVNI-FKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 199 (337)
Q Consensus 123 ~~~~~-~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
|.+.+ .++ .|++... +.......++.++|.++++++.||+|||+++..+..+.++..++..+ .
T Consensus 280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~----------- 345 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---A----------- 345 (438)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---c-----------
Confidence 44444 343 5777555 77888889999999999999999999999988887666555444333 1
Q ss_pred cchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-CccchHHHHH
Q psy11545 200 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGC 278 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 278 (337)
.....+..+.+.+.+.+.. .|..++...|..|.+ .+++.++.. ...+|+.++|.+.|.+.+..| .+..|++..+
T Consensus 346 --~~~~~~~~~~l~glg~~~i-~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~ 420 (438)
T PRK10133 346 --GGHVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_pred --CChHHHHHHHHHHHHHHHH-HHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 1112233333444444433 466678888887754 577777776 455788999999999999887 5666665444
Q ss_pred HHHH
Q psy11545 279 ISLL 282 (337)
Q Consensus 279 ~~~~ 282 (337)
..+.
T Consensus 421 ~~~~ 424 (438)
T PRK10133 421 CFAV 424 (438)
T ss_pred HHHH
Confidence 4333
No 156
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.40 E-value=1.6e-11 Score=109.16 Aligned_cols=153 Identities=7% Similarity=0.011 Sum_probs=102.5
Q ss_pred ccchhccchHHH-hhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh-cCChhhHHHHhHHHHHHHHHHHHHHHHhcCCC
Q psy11545 117 VNPVTFYAVNIF-KDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATKDFW 193 (337)
Q Consensus 117 ~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
++....+.+.++ ++.|++... ...............+++|+++|| +|||+.+..+.++.+++.+++.+ .
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~---~----- 108 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW---S----- 108 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH---h-----
Confidence 444555566555 566887444 444444444444455789999999 59999999999888887766655 1
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccc--hhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV--RGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (337)
........+...+.+.+.+ ...+...+++.|.+|++. |+.+.++.+...++|..++|.+.+++.+..||++
T Consensus 109 ------~~~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~ 181 (500)
T PRK09584 109 ------GHDAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV 181 (500)
T ss_pred ------cccHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 0111222222223333223 234555688999998653 4567888899999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q psy11545 272 TFLMYGCISLLGT 284 (337)
Q Consensus 272 ~~~~~~~~~~~~~ 284 (337)
.|.+.++..+++.
T Consensus 182 ~F~i~~i~~~i~~ 194 (500)
T PRK09584 182 AFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 9988775444433
No 157
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.40 E-value=1.4e-12 Score=111.17 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=88.3
Q ss_pred chhccchHH-HhhcCCC-chh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 119 PVTFYAVNI-FKDAGAH-VNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 119 ~~~~~~~~~-~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
....+.|.+ .+..+.+ ... +....+..+...++.++.++++||+++|+..........+..+.+......
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 296 (352)
T PF07690_consen 224 GFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS------- 296 (352)
T ss_dssp HHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH-------
T ss_pred HhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 356667765 4555777 333 666788888888999999999999999887777666666555554442221
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 257 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 257 (337)
.+....+....+.+.+.+. ..+....+..|..|++.||++.|+.+....+++.++|
T Consensus 297 -----~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 297 -----SSPVWLIIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 1223333333344443333 3556678999999999999999999999999999886
No 158
>KOG0255|consensus
Probab=99.39 E-value=6.1e-12 Score=113.00 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
.+..+++.++..+|+++.|.++|++|||+++++++++..++.+..++ ..++....+..++.+.+
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~----------------a~~~~~~~~~Rfl~G~~ 184 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF----------------APNYWMFLIFRFLSGFF 184 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH----------------hCcHHHHHHHHHHHHhh
Confidence 67788899999999999999999999999999999999998877777 45566666667777777
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
..+...+.+.+..|++++++|+.+..+ ....+.++.+++...+++.. +||+.+++..+..++..++ +++.||++
T Consensus 185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred ccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 777777888999999999999999999 88888999999999998887 8999999888888777655 55566764
No 159
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.39 E-value=5.2e-11 Score=103.35 Aligned_cols=137 Identities=7% Similarity=-0.066 Sum_probs=87.6
Q ss_pred hccchHHHhhcCC--Cchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 121 TFYAVNIFKDAGA--HVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 121 ~~~~~~~~~~~g~--~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
..+.+.+..+.+. +... ............+|.++++++.||+++|+.+.++.++.++..++... .
T Consensus 252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~---~--------- 319 (410)
T TIGR00885 252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF---A--------- 319 (410)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---c---------
Confidence 3455555555432 2221 22344444667899999999999999999988887777776665554 1
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc------CCcc
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL------TKEG 271 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~ 271 (337)
........+...+.+.+..+ |..++...+..+++.+..+.++.... +|+.+.|.+.|.+.|.. +.+.
T Consensus 320 ----~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~ 392 (410)
T TIGR00885 320 ----GGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNT 392 (410)
T ss_pred ----CChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccch
Confidence 12223344444444444444 77788888988877654444444433 89999999999999954 3555
Q ss_pred chHHH
Q psy11545 272 TFLMY 276 (337)
Q Consensus 272 ~~~~~ 276 (337)
.|++.
T Consensus 393 ~~~~~ 397 (410)
T TIGR00885 393 SFILP 397 (410)
T ss_pred HHHHH
Confidence 55543
No 160
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.38 E-value=1.4e-11 Score=120.71 Aligned_cols=144 Identities=10% Similarity=0.008 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
++..+...+..++.++++|+++||+|||+++.....+..+........... .+...+++..++.+..
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-------------~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-------------NSVPLLFAALFLMGIH 121 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHH
Confidence 455666778888999999999999999997644222222222211111111 2333444444454545
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
.....|...+++.|++|++.|+.++|+.++...+|.+++|.+.+.+.+..+|+..|+..+++.++ .++..+++|+++
T Consensus 122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 198 (1140)
T PRK06814 122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTG 198 (1140)
T ss_pred HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCC
Confidence 55556788899999999999999999999999999999999999999999998777333333333 334445566543
No 161
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.38 E-value=1.1e-11 Score=109.41 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=109.9
Q ss_pred hccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11545 121 TFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPA 200 (337)
Q Consensus 121 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
..-.+.+..+.|-+.+..+......++..++.++.|.++|.+|||+.++.+.++..++.++.+. .
T Consensus 64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at---------------A 128 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT---------------A 128 (599)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc---------------C
Confidence 3445677788887766688888889999999999999999999999999999999999988776 1
Q ss_pred chhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHH
Q psy11545 201 FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCIS 280 (337)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 280 (337)
.+....+....+.+.+ .+...+....++|+.|.+.|..+.++.....-.....++.+...+....+|||.|++.++..
T Consensus 129 ~~~~~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred CcHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 2233333333333333 23333445668999999999888776665544444456666666665679999999888877
Q ss_pred HHHHHHhhe
Q psy11545 281 LLGTIFFYV 289 (337)
Q Consensus 281 ~~~~~~~~~ 289 (337)
.++++..++
T Consensus 207 ~i~~vl~~~ 215 (599)
T PF06609_consen 207 GIALVLIFF 215 (599)
T ss_pred HHHHHHHHH
Confidence 766655443
No 162
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.38 E-value=1.2e-10 Score=101.35 Aligned_cols=222 Identities=12% Similarity=0.076 Sum_probs=115.8
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHh-cccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHH
Q psy11545 9 AFLSWDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 87 (337)
Q Consensus 9 ~~~~Wr~~f~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
...|||+.|++.++++++..+.. +++||+++ +++.+ .+ ......
T Consensus 165 ~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~----~~~~~-------------~~------------------~~~~~~ 209 (413)
T PRK15403 165 HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK----RGAVP-------------FS------------------AKSVLR 209 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc----ccCCC-------------CC------------------hHHHHH
Confidence 34499999999999888776654 45898752 00000 00 000112
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
++.+.+++|..+...+....... .......+.|.++++. |.+... ++.......+..+++.+.+.+.++.+++
T Consensus 210 ~~~~ll~~~~~~~~~l~~~~~~~-----~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~ 284 (413)
T PRK15403 210 DFRNVFRNRLFLTGAATLSLSYI-----PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEP 284 (413)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHH-----HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Confidence 44556777655543322222111 1334455677777765 777554 5666666777777777777766544444
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHH
Q psy11545 166 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 245 (337)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 245 (337)
+.......+..++.+++...... . ....+..++...++..+.+... +......-+ -....+|++.++.
T Consensus 285 ~~~~~~~~~~~ig~~l~~~~~~~-~---------~~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~-~~~~~~G~a~a~~ 352 (413)
T PRK15403 285 RFIWRAVPIQLVGLALLIVGNLL-W---------PHVWLWSVLGTSLYAFGIGLIF-PTLFRFTLF-SNNLPKGTVSASL 352 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-c---------cccHHHHHHHHHHHHHHHHHHh-HHHHHHHhc-cCCCCCcHHHHHH
Confidence 43333322333333322221111 0 0111112233333333333322 222221211 1122479999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHH
Q psy11545 246 TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLG 283 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 283 (337)
+.....+...++...+++.+. +-...+...++++.+.
T Consensus 353 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 353 NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 999999999998888877665 5555666555554443
No 163
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.38 E-value=2.3e-11 Score=104.94 Aligned_cols=135 Identities=12% Similarity=0.004 Sum_probs=102.1
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+.+..
T Consensus 22 ~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~----------- 90 (381)
T PRK03633 22 IAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL----------- 90 (381)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 566677889999998887544 88899999999999999999999999999999998888887776655
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL 267 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (337)
..+.+..++. .+..+.......+.....+.+..+++.|+++++.......+|..+++.+.+.+.+..
T Consensus 91 ----~~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 91 ----MVGFWSWLAW-RFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred ----hccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1223333333 333332222333443455667888889999999999999999999999998877653
No 164
>PTZ00207 hypothetical protein; Provisional
Probab=99.37 E-value=2.2e-11 Score=108.22 Aligned_cols=164 Identities=11% Similarity=0.058 Sum_probs=107.3
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
.+.+..+.+.+.++.|++..+ +....+. .....+.+++|++.||+|+|+++.++.++..++.+++++.... .
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~--~---- 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE--V---- 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc--c----
Confidence 445667788888888888554 4444432 2333456678999999999999999999999998887762110 0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
...+.+.+.+.....+.......+.....+.+++| +.||.+.|+......+|+++.+.+...+.. .+|+..|++
T Consensus 116 ----i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~ 189 (591)
T PTZ00207 116 ----IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFF 189 (591)
T ss_pred ----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 01223333323323222222223344566788887 679999999999999999876555555544 356677777
Q ss_pred HHHHHHHHHHHhheeccC
Q psy11545 276 YGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e 293 (337)
.+++.++..++.+.++++
T Consensus 190 l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 190 LMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHHHhheeC
Confidence 777777766665555543
No 165
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.37 E-value=8.4e-11 Score=101.93 Aligned_cols=132 Identities=10% Similarity=-0.021 Sum_probs=76.2
Q ss_pred hccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 121 TFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 121 ~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
..+.+.++++ .|.+... +.......++.+++.++.+++.||++++... ......++.+.+...... .
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF-G-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-c--------
Confidence 3344555555 5776444 5666666777788888888888888743322 222222222221111111 0
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
....+...........+.+. ..+....+..|.+| +.++++.++.+....+|+.+++.+.+.+...
T Consensus 296 -~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 296 -VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred -cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 01222233333333333333 34555677788887 5789999999999999999999888876544
No 166
>PRK09848 glucuronide transporter; Provisional
Probab=99.37 E-value=5.3e-11 Score=104.89 Aligned_cols=163 Identities=7% Similarity=-0.034 Sum_probs=98.7
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchhH-HHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNNN-LAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
.+++.+++|.++...+..++.... ........|+++++ .|.+.... +......++.+++.++.+++.||+|+|
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~ 294 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLIS-----TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK 294 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHH-----HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 455677777665433333322222 11222233444443 24432222 333333566778899999999999999
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCcc-------ch
Q psy11545 166 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK-------VR 238 (337)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r 238 (337)
+.+.++.++.+++.+.+.+ . . ..+.+.......+.+.+.+.. .+..++..+|..|.+ .+
T Consensus 295 ~~~~~g~~~~~i~~~~~~~---~-~---------~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~ 360 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFW---V-S---------VWSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIE 360 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH---c-C---------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccch
Confidence 9999988877776655543 1 0 012222222233333333333 345567777777643 45
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC
Q psy11545 239 GIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 269 (337)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (337)
|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 361 G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 361 GLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999998887766
No 167
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.36 E-value=4e-12 Score=115.57 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHH
Q psy11545 104 ILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 182 (337)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 182 (337)
+...+..+.+...........+.+-++++++... +++.+.+.++..++.++.+++.||+|||+.+.++.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 3333333333332344555567777778887444 888889999999999999999999999999999999999999887
Q ss_pred HHHHHHhcCCCCC-------------------C------------CC--Cc--chhHHHHHHHHHHHHHHhccccchhhh
Q psy11545 183 GLYIFATKDFWPE-------------------Y------------KF--PA--FVSYLPVLMLMTFTAASTIGYLVVPWV 227 (337)
Q Consensus 183 ~~~~~~~~~~~~~-------------------~------------~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (337)
++.......+... . +. .. ...+..+++..++.+.......++..+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 7643221110000 0 00 00 012233333444444444455677789
Q ss_pred hhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc----------------------CCccchHHHHHHHHHHHH
Q psy11545 228 MIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL----------------------TKEGTFLMYGCISLLGTI 285 (337)
Q Consensus 228 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------g~~~~~~~~~~~~~~~~~ 285 (337)
++.|.+|++.|+...++.+....+|..+++.+.+.+.+.+ +|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887643 155567777777666554
Q ss_pred HhheeccCCC
Q psy11545 286 FFYVYLPETK 295 (337)
Q Consensus 286 ~~~~~~~e~~ 295 (337)
. +++.|++.
T Consensus 276 ~-l~~~p~~l 284 (633)
T TIGR00805 276 P-FFFFPKAL 284 (633)
T ss_pred H-HHhCcccc
Confidence 4 34556543
No 168
>KOG3764|consensus
Probab=99.36 E-value=3.8e-12 Score=104.27 Aligned_cols=143 Identities=14% Similarity=0.132 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
++.....++.+++.+++.|.+.||+|+|..+++|++++..+.+++++ .+.+..+++.....+..
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf----------------g~sy~~l~vAR~LQgvg 172 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF----------------GNSYPMLFVARSLQGVG 172 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH----------------cchhHHHHHHHHHhhhh
Confidence 88889999999999999999999999999999999999999999988 34444555555555554
Q ss_pred hccccchhhhhhcccCCccc-hhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKV-RGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
.........+++++.||.+. |+.++|+...+..+|..++|.++|.+.+..|++.+|++.++++++...+.++.++.++.
T Consensus 173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 44445555789999999875 79999999999999999999999999999999999999999999988887776665543
No 169
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.36 E-value=1.6e-11 Score=104.98 Aligned_cols=162 Identities=9% Similarity=-0.004 Sum_probs=108.7
Q ss_pred chhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-----CChhhH-HHHhHHHHHHHHHHHHHHHHhcC
Q psy11545 119 PVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-----GRRSLT-FISSIGCGVSMTGLGLYIFATKD 191 (337)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 191 (337)
......|.+.++.|++..+ +..... ++...+ .++.|.++||+ |||+.+ +.+.++.+++...+++. .
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--~--- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--V--- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--C---
Confidence 3445667888888998555 444433 333333 88999999998 898875 45555555554444431 0
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC---
Q psy11545 192 FWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT--- 268 (337)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--- 268 (337)
.......+....+..........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..|
T Consensus 79 --------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 --------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 011222222222222333333345557889999999999999999999999999999999999888888
Q ss_pred -----CccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 269 -----KEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 269 -----~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
|+..|++.+++.++..++.++..||++
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999998888877766655444456643
No 170
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.36 E-value=3.8e-11 Score=104.94 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=97.3
Q ss_pred chhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 119 PVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 119 ~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
....+.+.++.+ .|++... ++..+...++..++.++.|+++||+|||+.+.++..+.++....+......
T Consensus 28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------- 99 (420)
T PRK09528 28 SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFA-------- 99 (420)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345555555555 7888555 889999999999999999999999999999877655544433221110000
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC--ccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP--TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
..................+....+. .....++.+ .+.++..+|.......+|..+++.+.+.+.+ .+|+..|+
T Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~ 174 (420)
T PRK09528 100 ---PLLQYNILLGAIVGGIYLGFGFLAG-AGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFW 174 (420)
T ss_pred ---HHHHHHHHHHHHHHHHHhhhhhccc-hhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHH
Confidence 0000000111111111111111111 111222222 2346778888888899999999999998876 48888888
Q ss_pred HHHHHHHHHHHHhheeccC
Q psy11545 275 MYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e 293 (337)
+.++++++..++.+...+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 175 LGSGSALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 8877777666554444444
No 171
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.36 E-value=4.1e-11 Score=103.76 Aligned_cols=159 Identities=9% Similarity=0.032 Sum_probs=99.2
Q ss_pred hhccchHH-HhhcCCCchh-HHHHHHHHH-HHHHHHHHHHHHhhhcCChhhHH-HHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 120 VTFYAVNI-FKDAGAHVNN-NLAAVIMGI-VRLIFTIASCIMMKKMGRRSLTF-ISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 120 ~~~~~~~~-~~~~g~~~~~-~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
.....+.+ .++.|.+... ++......+ +...+.+.+++ +||+|||+.++ .+.+..+++...+.+
T Consensus 34 ~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 101 (393)
T PRK15011 34 QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW----------- 101 (393)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH-----------
Confidence 34444444 4566887555 555444444 44555555666 99999998754 444444444444333
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchh--hhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccch
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRG--IVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTF 273 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (337)
......+........+......+....+..|..+++.|. ...++.+....+|..++|.+.+.+.+..||+..|
T Consensus 102 -----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f 176 (393)
T PRK15011 102 -----NRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY 176 (393)
T ss_pred -----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence 122222222222222333344555566777766655443 3346778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeccCCC
Q psy11545 274 LMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+..++..++..+..+++.||.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccC
Confidence 8888877777766666678764
No 172
>KOG2504|consensus
Probab=99.35 E-value=2.2e-12 Score=113.42 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=127.5
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCC--hh
Q psy11545 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGR--RS 166 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~ 166 (337)
.++++++.+ +.+.........++.....+.|.+..+.+++.+. .....+.++..+++.++.|++.|+... +.
T Consensus 292 ~~ll~~~~f-----l~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 292 LSLLKDPKF-----LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred HHHHcCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 456666533 3333333333444667778888888888887555 888899999999999999999999874 44
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHH
Q psy11545 167 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 246 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 246 (337)
+..++.++.+++.+.+.+ ...+..+...+.+.+.............+.|+.+.+.-..+.|+..
T Consensus 367 ~~~~~ll~~gl~~~~~p~----------------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l 430 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPF----------------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLL 430 (509)
T ss_pred HHHHHHHHHHHHHHHHHH----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHH
Confidence 444555555555533333 2344444444444444444445555568889999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhcC-CccchHHHHHHHHHHHHHhheecc
Q psy11545 247 CACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYVYLP 292 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 292 (337)
.+..++..++|++.+.+.|..| |...|...+++.+++..+ ++..+
T Consensus 431 ~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~ 476 (509)
T KOG2504|consen 431 LFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL-LLILR 476 (509)
T ss_pred HHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence 9999999999999999999887 777888888777777654 44444
No 173
>KOG2532|consensus
Probab=99.35 E-value=1.3e-11 Score=107.28 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=121.0
Q ss_pred cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHH
Q psy11545 131 AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLM 209 (337)
Q Consensus 131 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (337)
..++.++ ++.......+.+++.+.+|++.||+|-|+++..+.++.+++.++.-+.... ..+ .+++
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-------------~~~-~~~~ 133 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-------------GFY-LLLV 133 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-------------cch-hhHH
Confidence 3455334 888899999999999999999999999999999999999888887774443 223 4444
Q ss_pred HHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh-cCCccchHHHHHHHHHHHHHhh
Q psy11545 210 LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
..++.+.......|....+...+.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.++++++..++.+
T Consensus 134 ~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 134 LRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 555555444444566688999999999999999999999999999999999999998 9999999999999988877655
Q ss_pred eeccC
Q psy11545 289 VYLPE 293 (337)
Q Consensus 289 ~~~~e 293 (337)
++..|
T Consensus 214 ~~~~d 218 (466)
T KOG2532|consen 214 LFYSD 218 (466)
T ss_pred HHhcC
Confidence 54443
No 174
>PRK10133 L-fucose transporter; Provisional
Probab=99.34 E-value=4e-11 Score=104.95 Aligned_cols=135 Identities=11% Similarity=-0.053 Sum_probs=98.0
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
......+.|.+.++.+.+... ++......++..++.++.|+++||+|||+++..+..+.+++.+++......
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a------- 114 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------- 114 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 455667788887788888555 888889999999999999999999999999999999998888765321111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ 264 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (337)
.+....++...+.+.+.+.. .+....++.|..|.+.|+..+++.+....+|..+++.+.+.+.
T Consensus 115 -----~~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 -----MNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -----CCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333333334333433 3444677778877777777789999999999999988876544
No 175
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.34 E-value=5.3e-11 Score=103.58 Aligned_cols=192 Identities=9% Similarity=-0.032 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhh----hcCChhhHHHH-hHHH
Q psy11545 102 FVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMK----KMGRRSLTFIS-SIGC 175 (337)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~ 175 (337)
++......+..++. +.....+.+.++++.|.+... ........+..++..++.|+++| |+|||+.++.+ .+..
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 33333344444444 555666677778888887544 77778888999999999999999 59999998775 4444
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchh---HHHHHHHHHHHHHHhccccchhhhhhcccCCccch--hhhhhHHHHHHH
Q psy11545 176 GVSMTGLGLYIFATKDFWPEYKFPAFVS---YLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVR--GIVGGLTTCACH 250 (337)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~ 250 (337)
+++.+++.+.......-.... ...... ...++.+.+.....+....|. .++++|..|+++| +.+.++.+....
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~-~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNL-DKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHHhCchhhhhccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHH
Confidence 444444433111000000000 000011 122222223333333333333 6899999998866 578999999999
Q ss_pred HHHHHHHHHhHHH--HHhc-------------CCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 251 FFIFLTVKSYNMF--QTHL-------------TKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 251 ~~~~~~~~~~~~~--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
+|+.+++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|...
T Consensus 163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 9999998887754 2211 34567888888888888888888888653
No 176
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.33 E-value=4.6e-11 Score=106.10 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=109.9
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-----CChhh-HHHHhHHHHHHHHHHHHHHHHh
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-----GRRSL-TFISSIGCGVSMTGLGLYIFAT 189 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~ 189 (337)
........|.++.+.|.+.+. +.. ...+.. .++.++++.++||+ |||+. +..+.+..+++...+++..
T Consensus 28 ~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~--- 102 (491)
T PRK11010 28 LALTSGTLQAWMTVENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE--- 102 (491)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC---
Confidence 334555567778888877544 333 222222 26889999999999 99886 5455555555555554411
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH-hcC
Q psy11545 190 KDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-HLT 268 (337)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 268 (337)
...+...+....+....+.....+...++..|++|+++|+.+.++......+|..+++.+.+.+.+ ..|
T Consensus 103 ----------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 103 ----------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred ----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 012222233223333333334445567899999999999999999999999999999999999988 579
Q ss_pred CccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 269 KEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
|+..|++.+++.++..+..+ +.||+.
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 99999998887776655433 467753
No 177
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.32 E-value=3.8e-11 Score=102.57 Aligned_cols=148 Identities=13% Similarity=0.027 Sum_probs=105.8
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+..+..++.+.. . .
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~------- 84 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---A------- 84 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---h-------
Confidence 344566788888999988655 888899999999999999999999999999998887766655543 2 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC--Cccch
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT--KEGTF 273 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~ 273 (337)
.+.+..++...+.+.+.+.. .+....++.|.+| ++|+.+.++.+....+|..+++.+.+.+.+..+ |+..|
T Consensus 85 -----~~~~~l~~~~~~~g~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f 157 (355)
T TIGR00896 85 -----PGTALLFAGTALIGVGIAII-NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL 157 (355)
T ss_pred -----ccHHHHHHHHHHHHHHHHHH-hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 12233332222333333322 2333566778886 579999999999999999999999888877653 77777
Q ss_pred HHHHHHHHH
Q psy11545 274 LMYGCISLL 282 (337)
Q Consensus 274 ~~~~~~~~~ 282 (337)
...+++.++
T Consensus 158 ~~~~~~~~~ 166 (355)
T TIGR00896 158 AWWALPALL 166 (355)
T ss_pred HHHHHHHHH
Confidence 666554443
No 178
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.32 E-value=6.5e-11 Score=116.40 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
++..+++.++.+++.+++|+++||+|||++++++.++.++..++..+.... .....+++..++.+..
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~r~l~G~~ 116 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL-------------GWFWLAFAVTFLLGAQ 116 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH-------------ccHHHHHHHHHHHHHH
Confidence 556667788889999999999999999999998877666555554432222 2233333333333444
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
.....+...+++.|++|++.|+.++|+......+|.++++.+.+.+.+.
T Consensus 117 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 117 SAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444566678999999999999999999999999999999999998876
No 179
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.32 E-value=4.6e-11 Score=105.30 Aligned_cols=133 Identities=8% Similarity=-0.062 Sum_probs=94.4
Q ss_pred hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHH
Q psy11545 130 DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 208 (337)
Q Consensus 130 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
..|++... +......+++.+++..+.+++.+|++.|+++.++.++.+++.+.........+... .....+....
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~-----gi~~~~~~~~ 356 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF-----GISDEVFVLG 356 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccccc-----CCCCeeeeee
Confidence 46777555 78888888999999999999999999999999888887776654322110000000 0011112222
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 209 MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
...+...+.+....+. ..++.+..|++.+|+.+++.+.+.++|..+++.+.+.+.+..|
T Consensus 357 ~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 357 DSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred hhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2333344444444455 7889999999999999999999999999999999999999887
No 180
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.31 E-value=4.4e-11 Score=103.94 Aligned_cols=163 Identities=14% Similarity=0.205 Sum_probs=115.0
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-----CChh-hHHHHhHHHHHHHHHHHHHHHHh
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-----GRRS-LTFISSIGCGVSMTGLGLYIFAT 189 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (337)
......-.|.++++.|++.++ ++...+... .+..+++|+++||+ |||+ .+..+.++.+++...+.+..
T Consensus 15 ~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~--- 89 (402)
T PRK11902 15 LALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP--- 89 (402)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC---
Confidence 555667788999999998666 665554443 58889999999999 7876 56666777766666555410
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh-cC
Q psy11545 190 KDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LT 268 (337)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 268 (337)
.....+.+....+....+.....+...+++.|..|+++|+.+.++......+|..+++.+.+.+.+. .|
T Consensus 90 ----------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g 159 (402)
T PRK11902 90 ----------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG 159 (402)
T ss_pred ----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 0122222232322233344444566678999999999999999999999999999999998888885 59
Q ss_pred CccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 269 KEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
|+..|++.+++.++..+. .+..||++
T Consensus 160 w~~~f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence 999999888877665543 34566653
No 181
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.31 E-value=5.5e-11 Score=105.18 Aligned_cols=137 Identities=12% Similarity=0.154 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
++......+..++.++++|.++||+.||++++.+-++.++..+.+.+.... ...+.+.++.+.+..+..
T Consensus 48 alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~-----------~~~~~~~Ll~~~fl~g~~ 116 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF-----------GLLSPWLLLILTFLLGIG 116 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh-----------CcCCHHHHHHHHHHHHHH
Confidence 566666777788889999999999999999999988877766666554443 122333344444444444
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHH
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTI 285 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 285 (337)
.....|.-.++++|+.|+++...+.++.+...++...+||.++|.++...|....|.+-++..++...
T Consensus 117 ~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 117 SAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777899999999999999999999999999999999999999988888788776665554443
No 182
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.31 E-value=4.4e-10 Score=93.47 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=114.8
Q ss_pred CccchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCC
Q psy11545 116 GVNPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFW 193 (337)
Q Consensus 116 ~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
|.+.+......+-. ++|++... ........+..++|++++|++.||+|.|+++.++.++..+.++...+
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~--------- 337 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF--------- 337 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH---------
Confidence 35555555555555 67887555 77778889999999999999999999999999888877666655444
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC-ccc
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK-EGT 272 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 272 (337)
....... ....++.+.+..+..+.+-+|..++.|+++-+..+|+.+..+...++++|.+.+.+.+..|. +..
T Consensus 338 ------~~~~~~f-~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 338 ------LEGELDF-WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred ------ccccHHH-HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 1122222 22223333333344566689999999999999999999999999999999999999887664 334
Q ss_pred hHHHHHHHHHHHHHhheeccCCC
Q psy11545 273 FLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+....++..++.++ +...|+.+
T Consensus 411 ~~~i~vll~iGl~~-L~~v~~~~ 432 (438)
T COG2270 411 VLSIIVLLLIGLLL-LLRVKVPG 432 (438)
T ss_pred HHHHHHHHHhhHhh-EEeecCCC
Confidence 44555555555443 45556543
No 183
>KOG0569|consensus
Probab=99.30 E-value=4e-11 Score=103.33 Aligned_cols=144 Identities=18% Similarity=0.136 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
+.......+++++|+++.++++||+|||..+.++.++..++.+++.+.... ......++.-++.+...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~------------~~~e~li~GR~i~Gl~~ 130 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA------------PSFEMLILGRLIVGLAC 130 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHh
Confidence 355666789999999999999999999999999988888887777764443 12233333333333334
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHh-HHHHHh-cCCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY-NMFQTH-LTKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+... .....|+.|+.|.+.||....+......+|..++..+. +.+... ..|+..+....+.+++..+ .+.++||+.
T Consensus 131 gl~~-~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESP 208 (485)
T KOG0569|consen 131 GLST-GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESP 208 (485)
T ss_pred HHHH-HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 4333 34468999999999999998888888888888884443 344432 3466555555555555554 467789974
No 184
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.28 E-value=3.5e-11 Score=103.21 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=76.8
Q ss_pred chhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 119 PVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 119 ~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
....+.|.++++ .|++... +.......+..+++.+++|+++||+|||+.+..+....+.+..++.+....
T Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-------- 314 (366)
T TIGR00886 243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS-------- 314 (366)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC--------
Confidence 345556666654 4776544 667777888889999999999999999988777666555544444331100
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHH
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFF 252 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 252 (337)
..+....+........+.+.+. +..+...+|..| +++|+++|+.+..+++|
T Consensus 315 ---~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 315 ---PLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ---cchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 0022222233333333344443 344778888887 68999999998887765
No 185
>KOG2533|consensus
Probab=99.27 E-value=1.8e-10 Score=100.58 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=114.7
Q ss_pred hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHH
Q psy11545 130 DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 208 (337)
Q Consensus 130 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
+.++..+. +....++.++.+++.+.++.+.||++-.+.+....++..+..++... . .+...++
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---~-------------~s~~~~i 138 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---V-------------HSFPGLI 138 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---H-------------hhhHHHH
Confidence 34454455 78889999999999999999999999555554444444333322222 1 3444555
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH------HhcCCccchHHHHHHHHH
Q psy11545 209 MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ------THLTKEGTFLMYGCISLL 282 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~ 282 (337)
++.++.+.+..+..|....+++.+|.+++|+..+|+.++...+|+++++.+...+. ...||++.|++-++++++
T Consensus 139 alr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 139 ALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 55666666666666777899999999999999999999999999999999887764 346999999999999999
Q ss_pred HHHHhheeccCCCC
Q psy11545 283 GTIFFYVYLPETKN 296 (337)
Q Consensus 283 ~~~~~~~~~~e~~~ 296 (337)
..+++++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 99988899987644
No 186
>KOG1330|consensus
Probab=99.27 E-value=3.7e-11 Score=100.63 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=113.5
Q ss_pred hHHHHHHHhhHHHHHHHHHhcc-cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
.|||.|...+++++++.++.++ ++|++| |..++... .+. ..+......++.+
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~-------~~~---------------~~~~~ts~~kDl~ 238 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG-------ENK---------------MVKPFTSVWKDLK 238 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc-------CCc---------------CCCCccchHHHHH
Confidence 4999999999999998877664 788753 21111100 000 0001122234444
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh----cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD----AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
...+++.+....+......+. ...+.++.|.+... .|.+.+. .+...++..++.+|.+++|.++||+.|+
T Consensus 239 ~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~ 313 (493)
T KOG1330|consen 239 VLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRI 313 (493)
T ss_pred HHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHh
Confidence 455555444333333332222 44556666654432 2545444 6778888899999999999999984321
Q ss_pred ----hhHHHHhHHH---HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHH-HHHhccccchhhhhhcccCCccc
Q psy11545 166 ----SLTFISSIGC---GVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFT-AASTIGYLVVPWVMIGEVYPTKV 237 (337)
Q Consensus 166 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~p~~~ 237 (337)
.......+.+ +...+.+.+.... . ........+.+++++ ......+.+. .-+..|+.|++.
T Consensus 314 ~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~--~--------~~~s~~~~~il~~~g~~~~~~~~a~n-~~i~l~vV~p~~ 382 (493)
T KOG1330|consen 314 FPNSGTLRASQLSAALGAPLSIPFLFLFPA--F--------TSSSMIFGLILFLVGETISWFNWATN-NPIFLEVVPPSR 382 (493)
T ss_pred cccccchhHHHHHHhhhhhHHHHHHHHHHh--h--------hhHHHHHHHHHHHHHHHHHhcccccc-cceeeEecCccc
Confidence 1222222222 2222111111111 0 112222222222222 2222333333 456778999999
Q ss_pred hhhhhhHHHHHHHHHH-HHHHHHhHHHHHhc
Q psy11545 238 RGIVGGLTTCACHFFI-FLTVKSYNMFQTHL 267 (337)
Q Consensus 238 r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 267 (337)
|.++.++...+..+.+ +-+|.+.|.+.+..
T Consensus 383 Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 383 RTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 9999999987776644 44455888888764
No 187
>KOG2504|consensus
Probab=99.25 E-value=1.4e-10 Score=102.17 Aligned_cols=159 Identities=13% Similarity=0.169 Sum_probs=119.9
Q ss_pred ccchhccchHHHhhcCCCch-hHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVN-NNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
...+..+.+.+.++.+.+.. ..+...+......+..++.+.+.||+|.|.+.+.|.++.+++.++..+
T Consensus 62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF----------- 130 (509)
T KOG2504|consen 62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSF----------- 130 (509)
T ss_pred hheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH-----------
Confidence 34444556677777776644 478888888888899999999999999999999999999999988877
Q ss_pred CCCCcchhHHHHHHHHHHHH--HHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccch
Q psy11545 196 YKFPAFVSYLPVLMLMTFTA--ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTF 273 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (337)
..+.+.+++..-+.. ++++.+.|. ...+...| .++|+.+.|+......+|.++.|.+...+.+..||+..+
T Consensus 131 -----~~~i~~l~lt~gvi~G~G~~~~~~pa-iviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~ 203 (509)
T KOG2504|consen 131 -----ATSLWQLYLTFGVIGGLGLGLIYLPA-VVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGAL 203 (509)
T ss_pred -----HhhHHHHHHHHHHHhhccchhhhcch-hhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHH
Confidence 223333333333333 333333444 34555555 577999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeccC
Q psy11545 274 LMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~e 293 (337)
++++.+.+-.++....+.|.
T Consensus 204 l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 204 LIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 99998887776666665553
No 188
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.24 E-value=6.3e-10 Score=90.60 Aligned_cols=217 Identities=11% Similarity=0.097 Sum_probs=137.1
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 91 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (337)
|||....+-+.++++.++.++.-. .| .+.. ..+.+..+..+
T Consensus 163 gW~~aL~~WAl~allAl~~WlPq~--~r-----~~~~--------------------------------~~~~~~~~~~~ 203 (395)
T COG2807 163 GWRGALGFWALLALLALLIWLPQA--LR-----EQAA--------------------------------SIATKLVSVRK 203 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhc--cc-----cccc--------------------------------ccccccccccc
Confidence 799999999999999888877321 11 0000 01111112223
Q ss_pred HhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-CChhhHH
Q psy11545 92 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTF 169 (337)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~ 169 (337)
.+++|.-|. +.+++..+...++....|.|.++.|.|++... +....+..+.+++.++....+.+|. .+|+..+
T Consensus 204 vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~ 278 (395)
T COG2807 204 VWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVV 278 (395)
T ss_pred cccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 556654443 22333333333778889999999999998555 8889999999999999999999965 5666666
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhccc-CCccchhhhhhHHHHH
Q psy11545 170 ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEV-YPTKVRGIVGGLTTCA 248 (337)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~ 248 (337)
....++.++.+.+.+.. ....+.. ..+++.+.+ +..++....+.+- -.++..+.-.|+.+.+
T Consensus 279 ~~~~~~l~G~~G~~~~P--------------~~~~~lw--~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~ 341 (395)
T COG2807 279 LALLLMLVGLVGLLLAP--------------GQLPILW--ALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGV 341 (395)
T ss_pred HHHHHHHHHHHHHHHhh--------------hhHHHHH--HHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 66666666666655411 1111111 223333222 3345555555543 3455667788899999
Q ss_pred HHHHHHHHHHHhHHHHHhcC-CccchHHHHHHHHHHHHHhhe
Q psy11545 249 CHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 289 (337)
+++-..++|.++|.+.|..| |......++...++..+..+.
T Consensus 342 GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 342 GYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875 444555555555555444433
No 189
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.24 E-value=1.9e-10 Score=99.82 Aligned_cols=165 Identities=9% Similarity=0.034 Sum_probs=100.2
Q ss_pred ccchhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|.++. +.|.+... ++......++..++.++.|+++||+|||+.++.+....++...........+..
T Consensus 18 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~--- 94 (396)
T TIGR00882 18 MSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLL--- 94 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHH---
Confidence 3344445555555 46887555 888999999999999999999999999999987766655443332221111000
Q ss_pred CCCCCcchhHHHHHH-HHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccch
Q psy11545 195 EYKFPAFVSYLPVLM-LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTF 273 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (337)
.......... ....+.+.+ ...+....+..|..+ .++...|.......+|..+++.+.+.+.+ .+|+..|
T Consensus 95 -----~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f 165 (396)
T TIGR00882 95 -----QSNILVGAIVGGLYLGFVFS-AGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVF 165 (396)
T ss_pred -----HHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHH
Confidence 0011111111 122222222 223333455555432 23456677778888999999999887765 5899889
Q ss_pred HHHHHHHHHHHHHhheeccC
Q psy11545 274 LMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~e 293 (337)
++.+++.++..++.+...||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 166 WLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 88887777666554443444
No 190
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.23 E-value=1.3e-09 Score=95.02 Aligned_cols=157 Identities=11% Similarity=0.137 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC-hhhHHHHhHHHHHHHHHHHHHHHHhcC--CCCCCC---CCcch-hHHHHHHHH
Q psy11545 139 LAAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKD--FWPEYK---FPAFV-SYLPVLMLM 211 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~-~~~~~~~~~ 211 (337)
+.....++...+.+++-.++.+++|+ |++..++.++.++++....+.....++ +....+ .+... .+..++.+.
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 33444556666777778888999985 677788877777777766553322000 000000 00001 233444444
Q ss_pred HHHHHHhccccchhhhhhcccCCcc--chhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC--ccchHHHHHHHHHHHHHh
Q psy11545 212 TFTAASTIGYLVVPWVMIGEVYPTK--VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK--EGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~ 287 (337)
..+...+ ....++++++++..|++ ..|..+|+.|.+-.+...+.....|.+.+..|- ...+.+.++..+++.+..
T Consensus 389 ~~Gi~~A-~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 389 ILGIPLA-ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HhhHHHH-HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 4444444 34678899999999854 449999999999999999999888887666653 336667777778888888
Q ss_pred heeccCCCC
Q psy11545 288 YVYLPETKN 296 (337)
Q Consensus 288 ~~~~~e~~~ 296 (337)
++.+|+++.
T Consensus 468 ~~~~~~~~~ 476 (477)
T TIGR01301 468 LILLPRPRV 476 (477)
T ss_pred HHhCCCCCC
Confidence 888887654
No 191
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.21 E-value=2.8e-10 Score=98.47 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhH--HHHHHHHHHHHHHhccccc
Q psy11545 146 IVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY--LPVLMLMTFTAASTIGYLV 223 (337)
Q Consensus 146 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 223 (337)
+...+++++.|+++||+|||+++..+.++..++.+++.+.... . ....+ ..++...+..+.......+
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~r~l~G~~~~~~~~ 115 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSY-----A-----TIGIWAPILLLLARLIQGFSLGGEWG 115 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCCh-----h-----hhHHHHHHHHHHHHHHHHhhcccccc
Confidence 3445788999999999999999999998888887776661110 0 00001 1122222233322233345
Q ss_pred hhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH--------HhcCCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 224 VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ--------THLTKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 224 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
....++.|.+|+++|+...++......+|..+++.+...+. +..+|+..+++.+++.++...+ ....||+
T Consensus 116 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~ 193 (394)
T TIGR00883 116 GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEET 193 (394)
T ss_pred ccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 55788999999999999999999999999999888766543 3468888887766655544332 3334553
No 192
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.20 E-value=9.6e-10 Score=97.42 Aligned_cols=113 Identities=12% Similarity=0.003 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC-hhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 216 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
.+.....+.+..+|.++.|.+..+++| |+.++++.+++.+++.+++. ..+ .+....+....+.+.+
T Consensus 352 ~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~--~~~-----------~n~~~~i~~~~l~g~g 418 (599)
T PF06609_consen 352 GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA--VRP-----------DNKNAAIAFLVLAGFG 418 (599)
T ss_pred ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH--ccC-----------CCcchHHHHHHHHHHh
Confidence 566777888888899999999988887 44555665555544333332 111 1111222222233333
Q ss_pred HhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy11545 217 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ 264 (337)
Q Consensus 217 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (337)
.+... ......+.-..|++.-|++.|+..++..+|+.++..++..+.
T Consensus 419 iG~~~-~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 419 IGGIL-VPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHH-HHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33222 223455566788899999999999999999999988775543
No 193
>KOG0254|consensus
Probab=99.19 E-value=2.4e-10 Score=102.26 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
++......++..++++++|+++|++|||+.++++.+...++.++.+. ..+.....+.-.+.+.+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~---------------a~~~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL---------------APSWYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---------------hhhHHHHHHHHHHhccch
Confidence 68888899999999999999999999999999999999999998888 222333333333444333
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc--CCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL--TKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+.. ..+...|.+|+.|++.||...+..+....+|..++ .+.+...+.. +||..+.+..+.+++..+. .+++||+.
T Consensus 157 G~~-~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 157 GGA-SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhh-hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 333 34446899999999999999999998888776666 5556666543 8997777777777766665 77788863
No 194
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.19 E-value=1e-09 Score=94.77 Aligned_cols=160 Identities=6% Similarity=-0.082 Sum_probs=102.5
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhH-HHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSI-GCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|.++++.|.+... ++......+...++.++.|.++||+|||........ ...+..+.+.. .
T Consensus 20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~------ 90 (382)
T PRK11128 20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF---G------ 90 (382)
T ss_pred HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH---h------
Confidence 444566777888888888555 888888999999999999999999999532211111 11111111111 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
.++.+.+.......+.......+...++..+. .+.|+.+.+.......+|..++|.+.+.+.+.+||+..|+
T Consensus 91 ------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~ 162 (382)
T PRK11128 91 ------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW 162 (382)
T ss_pred ------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 12233333333323333334455555666665 3557888899999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhheeccCC
Q psy11545 275 MYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~e~ 294 (337)
+.++..++..+ ..+..||.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~ 181 (382)
T PRK11128 163 ILTAGVASMLL-GQLLRPTI 181 (382)
T ss_pred HHHHHHHHHHH-HHHccCCC
Confidence 76654444433 23344543
No 195
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.16 E-value=2e-09 Score=92.91 Aligned_cols=146 Identities=8% Similarity=-0.026 Sum_probs=99.0
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHH-HHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCG-VSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (337)
......+.|.++++.|.+... ++......+...++.++.+.++||+||+........... +..+.+.. ..
T Consensus 20 ~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~------ 91 (382)
T TIGR00902 20 YGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA--GA------ 91 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH--hh------
Confidence 455667788889999998555 888888899999999999999999998654322221111 11111111 11
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
.+.+..++...+...+.+ ...|...++..+. .++|+.++|.......+|..++|.+.+.+.+..||+..|.
T Consensus 92 ------~~~~~l~~~~~l~~~~~~-~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 92 ------HNAWLLFIAIGLFALFFS-AGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred ------hhHHHHHHHHHHHHHHHc-cchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 123333333333333333 3456666666553 4678999999999999999999999999999999999887
Q ss_pred HHHHH
Q psy11545 275 MYGCI 279 (337)
Q Consensus 275 ~~~~~ 279 (337)
+.+..
T Consensus 163 ~~~~~ 167 (382)
T TIGR00902 163 ILTAG 167 (382)
T ss_pred HHHHH
Confidence 76554
No 196
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.14 E-value=5e-13 Score=117.96 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
.+......++..+|++++|+++||+|||+.+..+..+..++.++..+... ..++..+....++.+..
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~R~~~G~~ 115 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS-------------YNNFWMLLIGRFLIGFG 115 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc-------------ccccccccccccccccc
Confidence 56778888999999999999999999999999999999888888777110 01333333333333333
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh---cCCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH---LTKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
..+..+....++.|..|++.|+...++.+....+|..++..+....... .+|+..+.+.++.+++..+ ...++||+
T Consensus 116 ~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 116 IGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 3344556679999999999999999999988888877776554433222 3488777777766665444 45678987
No 197
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.10 E-value=2.6e-09 Score=92.49 Aligned_cols=171 Identities=11% Similarity=0.075 Sum_probs=108.1
Q ss_pred HHHhcCccchhccchHHHhhcCCCchh-HHH--HHHHHHHHHHHHHHH-HHHhhhcCChhhHHHHhHHH-HHHHHHHHHH
Q psy11545 111 IYQFSGVNPVTFYAVNIFKDAGAHVNN-NLA--AVIMGIVRLIFTIAS-CIMMKKMGRRSLTFISSIGC-GVSMTGLGLY 185 (337)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~--~~~~~~~~~~~~~~~-g~l~d~~grr~~~~~~~~~~-~~~~~~~~~~ 185 (337)
+.+.........+.|.++++.|.+.+. +.. ..+..+..++.+++. ++..||+|||+..++.+.+. ..+...+...
T Consensus 11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~ 90 (390)
T TIGR02718 11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALV 90 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcC
Confidence 334444667778899999999988655 554 345577777777777 55789999998876554332 2222222211
Q ss_pred HHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q psy11545 186 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 265 (337)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (337)
. . . .....+.+. .......+.....+....+..|..+++.++...+.......+|..+++...+.+.+
T Consensus 91 ~-~-~---------~~~~~~~~~-~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~ 158 (390)
T TIGR02718 91 G-P-D---------VAGAGWAVG-LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG 158 (390)
T ss_pred C-c-c---------hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 011222222 22222223333334445667787887777877777777778899999988889999
Q ss_pred hcCCccchHHHHHHHHHHHHHhheeccC
Q psy11545 266 HLTKEGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 266 ~~g~~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
..||+..|++.+++.++..+..++..|+
T Consensus 159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 159 KFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999988877766654444343
No 198
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.07 E-value=7.8e-09 Score=85.61 Aligned_cols=173 Identities=6% Similarity=-0.003 Sum_probs=114.1
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
...+.+++|+.+...+ ..+++... -.....+.+.++.+ .|++... ....+.+..+.++|.+++.++..|+...
T Consensus 228 ~~~~l~~~~~~~~gvl-~~FlYVG~----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~ 302 (422)
T COG0738 228 GLSSLFQNKHLRLGVL-AIFLYVGA----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE 302 (422)
T ss_pred hHHHHHhChHHHHHHH-HHHHHHhH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4556777776555433 33333322 22345566666776 5776444 7777888888899999999999999998
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHH
Q psy11545 166 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 245 (337)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 245 (337)
+.+....++..+.++...+ .+....+....+.+.+.+ ...|..++...+..| ++-.. .|..
T Consensus 303 k~Laf~a~~~ill~~~~~l----------------~~g~v~~~~l~~ig~F~s-imfPTIfslal~~l~-~~ts~-~s~~ 363 (422)
T COG0738 303 KYLAFYALIAILLLLAVAL----------------IGGVVALYALFLIGLFNS-IMFPTIFSLALKNLG-EHTSV-GSGL 363 (422)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------hcChHHHHHHHHHHHHhH-HHHHHHHHHHHhccC-ccccc-ccee
Confidence 8888877666666655555 233444444444444444 446777899999988 43333 3344
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHH
Q psy11545 246 TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGT 284 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 284 (337)
....-+|+++.|.+.|++.|..|....+.....+|.+-.
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 445667899999999999999887766665555555444
No 199
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.05 E-value=7.1e-09 Score=82.21 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=98.7
Q ss_pred hcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCC
Q psy11545 114 FSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
....+.+..|.|.+-+..|+++++ ........++..+| ++.|.+.|++|.+.++.++.+...++...+...... .
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~---~ 90 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG---R 90 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC---c
Confidence 334678899999999999998666 67777777777664 888999999999999999999888888776553322 0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccc-cchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGY-LVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
. ...+.+.+ .+..+.++.+.++ .........+.|| ++||++.|+.-....+++.+...+...+.+.
T Consensus 91 i------~~~~~~~~-~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 91 I------PSLPVWLM-CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred c------CccchHHH-HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 0 11233333 3333333333332 2333344557888 5799999999999999999988887777665
No 200
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.02 E-value=2.1e-09 Score=91.41 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=102.8
Q ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-CChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHH
Q psy11545 133 AHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML 210 (337)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
++.+. ......++..--+..+++||++||+ |+|+.++.+.++.+++.++++.... .......+.+
T Consensus 58 ~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~-------------~~~~gl~i~L 124 (498)
T COG3104 58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV-------------SGPGGLYIGL 124 (498)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc-------------ccccHHHHHH
Confidence 65433 4444444444456789999999985 9999999999999999998887110 1222333333
Q ss_pred HHHHHHHhccccchhhhhhcccCCcc--chhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhh
Q psy11545 211 MTFTAASTIGYLVVPWVMIGEVYPTK--VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
.+.. ......=+...+++.|++|++ .|-.++++..+..++|+.++|.+.+++.+..||+..|...++-..++.+..+
T Consensus 125 ~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 125 ALII-VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHH-hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 3333 333344456678999999865 3677888889999999999999999999999999988888877777766543
No 201
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.00 E-value=4.3e-09 Score=92.59 Aligned_cols=161 Identities=9% Similarity=0.008 Sum_probs=101.7
Q ss_pred hHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh----cCChh-hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 125 VNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK----MGRRS-LTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 125 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
+++.++.|++... +...++..+...+..++.|+++|| +|||+ .++.+....+++.+++.. .|+.. .
T Consensus 24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~---~~~~~-~---- 95 (437)
T TIGR00792 24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT---TPDFS-A---- 95 (437)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh---CCCCC-c----
Confidence 3344456887555 888888889999999999999997 67755 455666666665554443 11100 0
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccC-CccchhhhhhHHHHHHHHHHHHHHHHhHHHHH-------hcCCc
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-------HLTKE 270 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~ 270 (337)
............++..+.+....|. .++..|.. ++++|+...++.+....+|+.+++.+.+.+.. ..+|+
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 96 -TGKLVYAYITYILLGLFYSFVNIPY-WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred -chHHHHHHHHHHHHHHHHHhhcccH-hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 0011122222223333333322222 56777876 56889999999888888888887777666653 34677
Q ss_pred cchHHHHHHHHHHHHHhheeccCCC
Q psy11545 271 GTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
..+.+.++++++..++.++..||++
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecC
Confidence 7888888877777766666667653
No 202
>KOG4686|consensus
Probab=99.00 E-value=6.3e-09 Score=81.91 Aligned_cols=134 Identities=11% Similarity=0.049 Sum_probs=89.5
Q ss_pred ccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHH-HHHHHHHHHhcCCC
Q psy11545 117 VNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM-TGLGLYIFATKDFW 193 (337)
Q Consensus 117 ~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 193 (337)
+..+....|.++++ .|++... +...+.......+.+++.|.++||+|++...+.+..+..+.. ..+.+ ..
T Consensus 280 ~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-t~------ 352 (459)
T KOG4686|consen 280 WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-TF------ 352 (459)
T ss_pred HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-hh------
Confidence 44455566666665 5887444 555555556667788999999999999987766555444333 33333 11
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
.+++..+..+.+.....+.. .|..++-+.|.++-|++.|.++.+.++|-++.|.+.+.+.+.-|
T Consensus 353 -------lsPy~~m~~lGLsysllAcs----lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 353 -------LSPYTSMTFLGLSYSLLACS----LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred -------ccHHHHHHHHhhhHHHHHHH----HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 23343333332222222222 25667778888999999999999999999999999999998765
No 203
>KOG2816|consensus
Probab=98.99 E-value=1.3e-08 Score=88.34 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q psy11545 144 MGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLV 223 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (337)
.++..++.+...|.++|++|||..+....+...+..+...+ ..++..+ ..-..+++. ....
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~-----------------~~~~~~~-~~~l~g~~~-~~~s 131 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF-----------------QGYWFFL-LLGLSGGFS-AIFS 131 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH-----------------HHHHHhh-hcccccchh-hhhh
Confidence 36777888999999999999999999988888877777766 2233333 111222222 2234
Q ss_pred hhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCCCCH
Q psy11545 224 VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 299 (337)
Q Consensus 224 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 299 (337)
..+++++|....+.|....|+.+...+.+..++|.+.+.+.+..|....+.+.++..++..+...+++||+..++.
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 5579999999999999999999999999999999999999999999889999999999999888899999876554
No 204
>KOG0252|consensus
Probab=98.97 E-value=5.4e-09 Score=87.74 Aligned_cols=112 Identities=13% Similarity=-0.012 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcc-hhHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAF-VSYLPVLMLMTFTAA 216 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 216 (337)
+.......++.++|.++.|++.|++|||+++...++++.++.++++..... ... .....+.+...+.+.
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~----------~~~~~~m~~L~~~R~~LGi 156 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT----------TSPLGVMMTLCFFRFLLGI 156 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC----------CCCcchhhHHHHHHHHhhc
Confidence 677788889999999999999999999999999999999888865552111 011 222333333333333
Q ss_pred HhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q psy11545 217 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 259 (337)
Q Consensus 217 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 259 (337)
.-.+-.|+..+.++|....+.||+-.+...+.+..|...|..+
T Consensus 157 GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 157 GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHH
Confidence 3344578888999999999999987777766665554444433
No 205
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.95 E-value=6.6e-08 Score=80.22 Aligned_cols=156 Identities=7% Similarity=-0.050 Sum_probs=110.9
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.......|.+.+.++++..+ +........+..+.++..+++.+|+|+|+-++.+..++++++.++.-....
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-------- 101 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-------- 101 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh--------
Confidence 33455667777777887555 888888899999999999999999999999999999999988876531111
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh----------
Q psy11545 197 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH---------- 266 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 266 (337)
......+..++..+.+.+.- ......++..+.|++....-+.+...++.+|++++|.+.+.++.+
T Consensus 102 ----~~y~~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 102 ----KSYGFFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred ----hhHHHHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 12222233223333333222 334467888888887778888999999999999999999988773
Q ss_pred ---------cCCccchHHHHHHHHHHHHH
Q psy11545 267 ---------LTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 267 ---------~g~~~~~~~~~~~~~~~~~~ 286 (337)
..++.++...+...++..+.
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~ 205 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVL 205 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 13566677766665555443
No 206
>KOG3762|consensus
Probab=98.93 E-value=6.3e-09 Score=89.00 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=109.8
Q ss_pred HHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhH
Q psy11545 126 NIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 204 (337)
Q Consensus 126 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (337)
.-+++.+-...- +........+.++.-++.+++.+|+|+-+++..++.+..+-.+.+.+ ..+.|
T Consensus 396 WHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~---------------L~n~W 460 (618)
T KOG3762|consen 396 WHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY---------------LQNPW 460 (618)
T ss_pred HHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH---------------hcCch
Confidence 345565533222 66677777888899999999999999999999888888777666655 23445
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHH-HHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHH
Q psy11545 205 LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC-HFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLG 283 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 283 (337)
..+.+=.+-+...+..|..+ -+|++...|++.|+++.++..... .+|-.+|+.++|.+.+.+|-+..|.++++.+++.
T Consensus 461 ~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~ 539 (618)
T KOG3762|consen 461 MVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVT 539 (618)
T ss_pred heeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHH
Confidence 44444444455555555444 689999999999999999987544 6788889999999999999999999998888877
Q ss_pred HHHh
Q psy11545 284 TIFF 287 (337)
Q Consensus 284 ~~~~ 287 (337)
+++.
T Consensus 540 l~~~ 543 (618)
T KOG3762|consen 540 LALF 543 (618)
T ss_pred HHHH
Confidence 6543
No 207
>KOG2325|consensus
Probab=98.90 E-value=4.3e-08 Score=84.41 Aligned_cols=147 Identities=11% Similarity=0.061 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC-hhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 216 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
++..+...++..+++++.|+...|.++ |+.++.+.++++++.++.....+. .+....+++...+..+
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~------------~~~~~y~mL~~R~l~G 141 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV------------PNGVKYLMLVARILTG 141 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc------------ccchHHHHHHHHHHcC
Confidence 788888999999999999999999886 788889999999999988665554 1213333333444444
Q ss_pred HhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh--cC-----------CccchHHHHHHHHHH
Q psy11545 217 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH--LT-----------KEGTFLMYGCISLLG 283 (337)
Q Consensus 217 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g-----------~~~~~~~~~~~~~~~ 283 (337)
.+.+.....-.|+++..-.+.|.++++..+...-+|.++||.+...+..- .| +..+-++.+++.++.
T Consensus 142 vg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~ 221 (488)
T KOG2325|consen 142 VGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIY 221 (488)
T ss_pred cCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHH
Confidence 55454556678999988888899999888887778888887665443321 01 233566777777777
Q ss_pred HHHhheeccCCCC
Q psy11545 284 TIFFYVYLPETKN 296 (337)
Q Consensus 284 ~~~~~~~~~e~~~ 296 (337)
.++..++.+|...
T Consensus 222 ~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 222 IVIILFFFKEVYR 234 (488)
T ss_pred HHHHHhheeeccc
Confidence 7777777777543
No 208
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.89 E-value=3e-07 Score=81.63 Aligned_cols=148 Identities=10% Similarity=0.042 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCChhh-------HHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHH
Q psy11545 136 NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSL-------TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 208 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
.+.....+..+..++.+++.+++.||+++|+. +.+++++.+++.+.++......... . ...+.++.+.
T Consensus 310 ~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~-~----~~~s~~~~i~ 384 (489)
T PRK10207 310 NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADA-Q----GLTSPWFIVL 384 (489)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C----CccCHHHHHH
Confidence 33455555566677778888999999999873 6677777666654443211100100 0 0112333333
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH----------hcCCccchHHHHH
Q psy11545 209 MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT----------HLTKEGTFLMYGC 278 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~ 278 (337)
...+.+.+- ....+....++.+..|++.+|.++|+.+....+|+.++..+...... ...+.+.|...++
T Consensus 385 ~~~l~g~Ge-~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 463 (489)
T PRK10207 385 VYLFQSLGE-LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGL 463 (489)
T ss_pred HHHHHHHHH-HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHH
Confidence 333333333 33456667888899999999999999999999999999877654421 0012345666666
Q ss_pred HHHHHHHHhhe
Q psy11545 279 ISLLGTIFFYV 289 (337)
Q Consensus 279 ~~~~~~~~~~~ 289 (337)
.++++.++.+.
T Consensus 464 ~~~~~~v~~~~ 474 (489)
T PRK10207 464 VTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 209
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.88 E-value=7.2e-08 Score=85.24 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=94.8
Q ss_pred chhccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcC-----ChhhHHHHhHHHH-HHHHHHHHHHHHhc
Q psy11545 119 PVTFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMG-----RRSLTFISSIGCG-VSMTGLGLYIFATK 190 (337)
Q Consensus 119 ~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~ 190 (337)
......+.++. +.|++... +.......+...+-.+ +|.++|+++ ||+.++++.++.. ++...+.. .
T Consensus 43 l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~---~-- 116 (468)
T TIGR00788 43 LMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPG---K-- 116 (468)
T ss_pred HhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccc---c--
Confidence 33334444454 56888555 4666666676666544 999999997 6666666655442 22111111 0
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhh---hHHHHHHHHHHHHHHHHhHHHHHhc
Q psy11545 191 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVG---GLTTCACHFFIFLTVKSYNMFQTHL 267 (337)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (337)
.+.........+.............-.+..|..+ +.++... +.......+|..+++.+.|.+.+..
T Consensus 117 ----------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~ 185 (468)
T TIGR00788 117 ----------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT 185 (468)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111122212222222222333455788889888 4444433 3334444589999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 268 TKEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 268 g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
+|+..|++.+++.++.. +...+++|.+
T Consensus 186 ~~~~~f~~~a~l~ll~~-~~~~~~~E~~ 212 (468)
T TIGR00788 186 LTRILFLITAALLLLQL-FVSNLSKERR 212 (468)
T ss_pred CcchHHHHHHHHHHHHH-HHHHhccccc
Confidence 99999988888877764 3456678764
No 210
>PTZ00207 hypothetical protein; Provisional
Probab=98.86 E-value=2.2e-07 Score=83.09 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=109.1
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchh--HH-HHHHHHHHHHHHHHHHHHHhhhcC
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNN--NL-AAVIMGIVRLIFTIASCIMMKKMG 163 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~~~~~~~~~~~g~l~d~~g 163 (337)
++++.+++..+|.. +...+ +..........-+.++.+.. |.+.+. .. ..++.++++.+|.+..|.++...-
T Consensus 345 t~~q~l~~~d~Wll----~~~~~-cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~ 419 (591)
T PTZ00207 345 TFIEGLKTARLWCL----LWSIF-CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQ 419 (591)
T ss_pred hHHHHHhchhHHHH----HHHHH-HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHH
Confidence 56666666554432 22222 22222334455566777777 763222 23 678889999999999998873322
Q ss_pred Chh---------hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC
Q psy11545 164 RRS---------LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP 234 (337)
Q Consensus 164 rr~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 234 (337)
||+ .+.+..+ +.++.+++.+ . .+.....+...+.+.+.+..+ ++....++|+|.
T Consensus 420 ~~~~~~r~prt~~l~~~~~-~~~~~lll~~---~------------~p~~~L~~~~~lvg~~~G~~~-~~~~~i~selFg 482 (591)
T PTZ00207 420 KRRAEDRVPITIALFIPSV-CIITMLTLFL---T------------LPKAALPLPYFIAAFANGFMA-ATIALVTRTIFA 482 (591)
T ss_pred hhccccccchhHHHHHHHH-HHHHHHHHHH---H------------CCccHhHHHHHHHHHHhhHhH-HHHHHHHHHHhc
Confidence 222 1222222 3333333333 1 111233344444444445443 455788999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHH-HHHhHHHHHhcC-------------CccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 235 TKVRGIVGGLTTCACHFFIFLT-VKSYNMFQTHLT-------------KEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 235 ~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
++-|+-+.+......+|+.+. ..++|.+.|... ++.+|++.+++++++.+....+.-+++
T Consensus 483 -k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 483 -KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred -cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 888888888888888888777 567777776432 356788998998888877655544554
No 211
>KOG0253|consensus
Probab=98.83 E-value=1.8e-08 Score=82.31 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=100.5
Q ss_pred CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHH
Q psy11545 132 GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML 210 (337)
Q Consensus 132 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
|.+..+ .+.......+..+++..+|.++|++|||+..........+..++-+. +++...+. .
T Consensus 109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~----------------spnf~~L~-~ 171 (528)
T KOG0253|consen 109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA----------------SPNFASLC-V 171 (528)
T ss_pred chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC----------------CCCeehhh-H
Confidence 544333 67777788899999999999999999999887777666655554443 22332222 2
Q ss_pred HHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhhee
Q psy11545 211 MTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 290 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (337)
+-...+++.+..|...++-.|..|..+|+..+-+. +...+|.++...+.-......||++..........+.+. .+++
T Consensus 172 f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w 249 (528)
T KOG0253|consen 172 FRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVW 249 (528)
T ss_pred HHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhh
Confidence 23333344444677678888999999999876555 777788888887777778889999866666654444443 4567
Q ss_pred ccCCC
Q psy11545 291 LPETK 295 (337)
Q Consensus 291 ~~e~~ 295 (337)
.||+.
T Consensus 250 ~~ESp 254 (528)
T KOG0253|consen 250 VYESP 254 (528)
T ss_pred cccCc
Confidence 88863
No 212
>KOG2563|consensus
Probab=98.82 E-value=1.5e-07 Score=79.16 Aligned_cols=194 Identities=15% Similarity=0.106 Sum_probs=115.8
Q ss_pred cHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy11545 85 NFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG 163 (337)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 163 (337)
-..+..+.++++++... ...... .+..++.+...+...+...|++ ...+.......+++++++.++|.+.||.+
T Consensus 255 f~~si~~~~~n~~F~il----~~~ygi-~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk 329 (480)
T KOG2563|consen 255 FPKSIKSCFKNRQFIIL----AICYGI-GLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTK 329 (480)
T ss_pred HHHHHHHHHcCccHHHH----HHHHhh-hHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34566778888755322 111111 1111223333333233344555 34488888899999999999999999987
Q ss_pred Chh-hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhh
Q psy11545 164 RRS-LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVG 242 (337)
Q Consensus 164 rr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 242 (337)
.-+ ..++......++...+.. ... .....+.+...+...+.+..+..|+..-+..|..-|..-++..
T Consensus 330 ~fk~~~~v~~~~~~v~~~~l~~-~t~-----------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSs 397 (480)
T KOG2563|consen 330 KFKLTTLVLYLFALVGTLMLLT-CTL-----------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSS 397 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhc-----------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccc
Confidence 643 344444443333221111 111 1122233344445555666677788888888876666678889
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhcC----CccchHHHHHHHHHHHHHhheeccCCC
Q psy11545 243 GLTTCACHFFIFLTVKSYNMFQTHLT----KEGTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
|+.+..+++.+++-.++.+...+..+ +...-+..+..++++.++..++.|+-+
T Consensus 398 Gll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 398 GLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred eeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 99999999999999999998888766 443444555555556655555544433
No 213
>KOG3764|consensus
Probab=98.79 E-value=1.3e-08 Score=84.01 Aligned_cols=229 Identities=11% Similarity=-0.013 Sum_probs=131.4
Q ss_pred ccccchhh----hhHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q psy11545 3 FEYSLGAF----LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQ 78 (337)
Q Consensus 3 ~~~~~~~~----~~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (337)
+|+.+|.. .|-+.+|++.+++.++-..+.+++-|..+ .+.+
T Consensus 211 vgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~~~------------------------------ 255 (464)
T KOG3764|consen 211 VGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MDPD------------------------------ 255 (464)
T ss_pred ecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cCcc------------------------------
Confidence 44444444 39999999999999998888877433210 0000
Q ss_pred hhhhhhcHHHHHHHhhcccchhHHHHHHHHHHHHHhcCccch-hccchHHHhhcCCCc-hhHHHHHHHHHHHHHHHHHHH
Q psy11545 79 ETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPV-TFYAVNIFKDAGAHV-NNNLAAVIMGIVRLIFTIASC 156 (337)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 156 (337)
+..+..++++++++|..+............ ...+ ..+.....+....+. ..++......+...+++.+.|
T Consensus 256 ---~~~~~~~~~~Ll~dP~I~~~agai~~~n~~-----lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg 327 (464)
T KOG3764|consen 256 ---STEQGTPMWSLLMDPYILLIAGAITFSNSS-----LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFG 327 (464)
T ss_pred ---ccccCccHHHHHhCchHhhhhcchhhccch-----HHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHH
Confidence 112234566777777443222111111111 1111 122222334444332 236777778889999999999
Q ss_pred HHhhhcCChhhH--HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC
Q psy11545 157 IMMKKMGRRSLT--FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP 234 (337)
Q Consensus 157 ~l~d~~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 234 (337)
.+.||++..+.+ ..+++...+++...-+.... ...+.....+++.+........|. ..+..|.-.
T Consensus 328 ~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~------------~~L~vp~~~l~~~i~~~dasl~P~-l~~lvd~rh 394 (464)
T KOG3764|consen 328 KLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI------------AQLWVPNFGLGFGIGLADASLIPT-LGYLVDPRH 394 (464)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH------------HHHhhhhHHHHHHHHHHHHHHhhh-hHHhcchhh
Confidence 999999943322 23333333222222221110 122222333333333333344444 345555444
Q ss_pred cc---chhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHh
Q psy11545 235 TK---VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 235 ~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 287 (337)
.+ .-|...++......+|.+++|.+.|.+.+.+|+.|...+.++..++-.-++
T Consensus 395 ~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 395 VSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred ccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence 44 668899999999999999999999999999999998888887777665543
No 214
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.77 E-value=1.4e-06 Score=77.25 Aligned_cols=148 Identities=13% Similarity=0.112 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCC-----hhhH--HHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHH
Q psy11545 137 NNLAAVIMGIVRLIFTIASCIMMKKMGR-----RSLT--FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLM 209 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr-----r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (337)
..+...+..+.-++..++..++-.+.+| +... .+|+++.+++.+.+++.....+++ ...+.++.+..
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~------~~~s~~~~i~~ 387 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG------GLTSPWFMVLI 387 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC------CccCHHHHHHH
Confidence 3566666666666665554443333333 3333 567777777666655432210100 01233333433
Q ss_pred HHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhhe
Q psy11545 210 LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 289 (337)
.. +.........|...+++.+..|++.||+.+|+......+|..+++.+.....+..++...+...++.+++..++.++
T Consensus 388 ~~-~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 388 YL-FQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HH-HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 33 33344444567778999999999999999999999999999999888887766667777777777766666655444
Q ss_pred ec
Q psy11545 290 YL 291 (337)
Q Consensus 290 ~~ 291 (337)
..
T Consensus 467 ~~ 468 (475)
T TIGR00924 467 MV 468 (475)
T ss_pred HH
Confidence 33
No 215
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.74 E-value=1.5e-06 Score=71.67 Aligned_cols=155 Identities=13% Similarity=0.060 Sum_probs=96.8
Q ss_pred HHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhH
Q psy11545 126 NIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 204 (337)
Q Consensus 126 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (337)
..+++.|++..+ ........+...+...+.|.++||+|||+..+..+++.+++++.... +..
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-----------------~~~ 121 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-----------------SNY 121 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-----------------ccc
Confidence 445677887555 77777778888888999999999999999988888888887764333 333
Q ss_pred HHHHHHHHHHHHHhccccchhhh-hhccc----CCccchhhhhhHHH-HHHHHHHHHHHHHhHHHHHhcCC--ccchHHH
Q psy11545 205 LPVLMLMTFTAASTIGYLVVPWV-MIGEV----YPTKVRGIVGGLTT-CACHFFIFLTVKSYNMFQTHLTK--EGTFLMY 276 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~-~~~e~----~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~ 276 (337)
..++...++++.......+..-+ ++.|. +|.+..+...+... ..+.+.++....+...+.+..+. ..+|...
T Consensus 122 ~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a 201 (354)
T PF05631_consen 122 PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence 44444444444333222222112 33343 45554455555444 23344445555555666666554 6688888
Q ss_pred HHHHHHHHHHhheeccCCCCC
Q psy11545 277 GCISLLGTIFFYVYLPETKNK 297 (337)
Q Consensus 277 ~~~~~~~~~~~~~~~~e~~~~ 297 (337)
..+.+++.+++....+|..+.
T Consensus 202 ~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 202 IVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHHhcccccCCC
Confidence 777777777666666776543
No 216
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.73 E-value=4e-07 Score=79.50 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=45.3
Q ss_pred chHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCC-hhhHHHHhHHHHHHHHHHHH
Q psy11545 124 AVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGL 184 (337)
Q Consensus 124 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~ 184 (337)
.+++.++.|++..+ ++......++.+++.++.|.++||+|| |+++.++.++..++.....+
T Consensus 26 ~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 26 GSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33444556888555 899999999999999999999999965 66777666666555544443
No 217
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.71 E-value=1.8e-07 Score=83.45 Aligned_cols=146 Identities=10% Similarity=0.019 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHH
Q psy11545 137 NNLAAVIMGIVRLIFTIAS----CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMT 212 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~----g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
..+...+..+..++..++. +++.+|.+..+.+.+++++.+++.+.+.......+++ ...+.+ ..+...+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~------~~vs~~-~~~~~~~ 390 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA------GIVSVN-WLIASYG 390 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CccCHH-HHHHHHH
Confidence 3455555555555555555 4445555555677788888888877766533221110 011233 3333344
Q ss_pred HHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH----------hcCCccchHHHHHHHHH
Q psy11545 213 FTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT----------HLTKEGTFLMYGCISLL 282 (337)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~ 282 (337)
..........|....++.+..|++.||..+|+......+|..++..+...... ..++...|...++.+++
T Consensus 391 l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 470 (500)
T PRK09584 391 LQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAV 470 (500)
T ss_pred HHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHH
Confidence 44444445567778999999999999999998877777777776655542211 11244566666666555
Q ss_pred HHHHhhe
Q psy11545 283 GTIFFYV 289 (337)
Q Consensus 283 ~~~~~~~ 289 (337)
..++.+.
T Consensus 471 ~a~~~~~ 477 (500)
T PRK09584 471 IAVLMLL 477 (500)
T ss_pred HHHHHHH
Confidence 4444333
No 218
>PRK09669 putative symporter YagG; Provisional
Probab=98.68 E-value=1.7e-07 Score=82.65 Aligned_cols=163 Identities=7% Similarity=-0.015 Sum_probs=96.0
Q ss_pred hccchHHHh-hcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh----cCChhh-HHHHhHHHHHHHHHHHHHHHHhcCCC
Q psy11545 121 TFYAVNIFK-DAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK----MGRRSL-TFISSIGCGVSMTGLGLYIFATKDFW 193 (337)
Q Consensus 121 ~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
..|.+.++. ..|++... +....+..+...+..++.|+++|| +|||+. ++.+.+..+++.+++.. .|+. .
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~---~p~~-~ 104 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY---TPDF-G 104 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh---CCCC-C
Confidence 334444444 45887555 788888888899999999999998 777555 44555555555433322 2110 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccC-CccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc-----
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL----- 267 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 267 (337)
. .....+..+...++..+......|. .++.+|+. ++++|+...+....+..+|+.+++.+...+....
T Consensus 105 ~-----~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~ 178 (444)
T PRK09669 105 A-----TGKIIYACVTYILLSLVYTAINVPY-CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDE 178 (444)
T ss_pred c-----chHHHHHHHHHHHHHHHHHhhcchH-HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 0 0112222222333333343332233 57788877 5578998888888888888888776655554432
Q ss_pred --CCccchHHHHHHHHHHHHHhheeccC
Q psy11545 268 --TKEGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 268 --g~~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
+|+..+.++++++++..+++++..+|
T Consensus 179 ~~g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 179 QKGYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 45555666666666655555555555
No 219
>PRK11462 putative transporter; Provisional
Probab=98.60 E-value=8.8e-07 Score=78.31 Aligned_cols=162 Identities=9% Similarity=0.029 Sum_probs=95.9
Q ss_pred hccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh----cCChhhHH-HHhHHHHHHHHHHHHHHHHhcCCC
Q psy11545 121 TFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK----MGRRSLTF-ISSIGCGVSMTGLGLYIFATKDFW 193 (337)
Q Consensus 121 ~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
..|..+++.+ .|++... +....+.-+.-.+.-++.|+++|| +|||+..+ ++.+..+++.+++.. .|+.
T Consensus 29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~---~p~~-- 103 (460)
T PRK11462 29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS---TPDL-- 103 (460)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh---CCCC--
Confidence 3344444444 4877444 777777788888999999999995 68876555 454555555433322 2110
Q ss_pred CCCCCCcch-hHHHHHHHHHHHHHHhccccchhhhhhcccCC-ccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC---
Q psy11545 194 PEYKFPAFV-SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT--- 268 (337)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--- 268 (337)
. ... ..+..+...++..+......|- .++.+|+.+ +++|+...++-..+..+|..+++.+...+....|
T Consensus 104 s-----~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~ 177 (460)
T PRK11462 104 S-----MNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN 177 (460)
T ss_pred C-----cchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 0 111 1222333333333344333333 577788776 6789999999999999988888777666655443
Q ss_pred ----CccchHHHHHHHHHHHHHhheeccC
Q psy11545 269 ----KEGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 269 ----~~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
|.....+++++.+++..+++...+|
T Consensus 178 ~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 178 KPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 4444455555555555444444444
No 220
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.59 E-value=1.7e-07 Score=82.31 Aligned_cols=161 Identities=14% Similarity=0.023 Sum_probs=101.3
Q ss_pred hHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhh----hcCChhhHH-HHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 125 VNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMK----KMGRRSLTF-ISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 125 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
+++.+..|++... +....+..+...+..++.|.++| |+|||+..+ ++.+..+++.+++.... |.+ +.
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~--p~~-~~---- 98 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPP--PAG-LS---- 98 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccc--cch-hh----
Confidence 3334445887544 66677777778888889999999 789876655 55566666555544310 000 00
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC-ccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc-------CCc
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL-------TKE 270 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~ 270 (337)
......+..+...++..+......|. .++.+|+.+ +++|....+....+..+|..+...+.+.+.+.. +|+
T Consensus 99 ~~~~~~~~~~~~~l~~~~~t~~~i~~-~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 99 FTAKLVWLFVFYILFDIAYTFVQIPY-NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred hhhHHHHHHHHHHHHHHhhhhccCch-hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 00111222333333444444443333 688899987 468999999999888888877777777766543 356
Q ss_pred cchHHHHHHHHHHHHHhheeccC
Q psy11545 271 GTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
....+.+++.+++.++..+..+|
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeee
Confidence 66677777777777776677777
No 221
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.53 E-value=9.6e-07 Score=78.50 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=92.2
Q ss_pred hhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhh----hcCChh-hHHHHhHHHHHHHHHHHHHHHHhcCC
Q psy11545 120 VTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMK----KMGRRS-LTFISSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 120 ~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d----~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
...|.+.++.+ .|++... +....+..+...+..++.|+++| |+|||+ .++.+.+..+++..++.. .|+.
T Consensus 25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~---~p~~- 100 (473)
T PRK10429 25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS---AHLF- 100 (473)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc---CCCC-
Confidence 34445555555 4887555 77778888888999999999999 569855 455555555555433321 1100
Q ss_pred CCCCCCCcc-hhHHHHHHHHHHHHHHhccccchhhhhhcccC-CccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc---
Q psy11545 193 WPEYKFPAF-VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL--- 267 (337)
Q Consensus 193 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 267 (337)
. .. ...+..+...++..+......|- .++.+|+. ++++|....+.-.....+|+.+.+.+...+.+..
T Consensus 101 -~-----~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~ 173 (473)
T PRK10429 101 -E-----GTAQYVFVCVTYILWGMTYTIMDIPF-WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG 173 (473)
T ss_pred -C-----ccHHHHHHHHHHHHHHHHHHHHcchH-HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 01 11122222223333333332232 57778887 5789999888877777777666665555443322
Q ss_pred ----CCccchHHHHHHHHHHHHHhheeccCC
Q psy11545 268 ----TKEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 268 ----g~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
+|.....+++++.+++.+++++..+|.
T Consensus 174 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 174 DRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 233344445555454444555545553
No 222
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.51 E-value=1.1e-07 Score=80.81 Aligned_cols=160 Identities=7% Similarity=-0.047 Sum_probs=84.0
Q ss_pred ccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHH--HHHHH-HHHHHHhcC
Q psy11545 117 VNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGV--SMTGL-GLYIFATKD 191 (337)
Q Consensus 117 ~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 191 (337)
+.....+.+..+++ .|++..+ +...+...+..++..++.|.++||+|.||-++....+..+ +.+.. .+....
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll--- 99 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL--- 99 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH---
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33444555666665 7998555 8999999999999999999999999977765544332222 11111 111111
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhcccc---chhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 192 FWPEYKFPAFVSYLPVLMLMTFTAASTIGYL---VVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
..+.+... .+.+...+..+. |+.-+++.+. . +..+.-.|=.-+.+.+|-++++.+.|.+.+. +
T Consensus 100 --------~~n~~lg~---iig~i~l~~~f~~~~~~~Ea~~er~-s-r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~ 165 (412)
T PF01306_consen 100 --------QSNFWLGA---IIGGIYLGLVFNAGVPLSEAYAERV-S-RRNGFEYGRARMWGSIGFAIASLLAGILFNI-N 165 (412)
T ss_dssp --------HTT-HHHH---HHTTTTTTTTTTTHHHHHHHHHHHH-H-HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred --------HHHHHHHH---HHHHHHHHHHHcccchHHHHHHHHH-H-HHhcCCcchHHHHhhHHHHHHHHHhheeeee-C
Confidence 01111111 111122222222 2322333222 1 2234556666778888888999999988874 4
Q ss_pred CccchHHHHHHHHHHHHHhheeccC
Q psy11545 269 KEGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
.+..|++..+..++..++.++..|+
T Consensus 166 p~~~fwi~s~~~~il~lll~~~~~~ 190 (412)
T PF01306_consen 166 PNIIFWIASAAAIILLLLLLLLKPD 190 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS---
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4556776665555554444444443
No 223
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.1e-05 Score=66.42 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=112.6
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........+.+-++.|++... ++.+.+..++..+.+++..++.+|+|.++.+..++++.+++..+=..
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~----------- 96 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL----------- 96 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-----------
Confidence 344555667777888888555 89999999999999999999999999999998888877777665433
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc-CCccchH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL-TKEGTFL 274 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 274 (337)
...+..+....+.+.+.+.+ +.+....+-+-||++ -+..+|++.+...+++++++.+..++.++. ||+....
T Consensus 97 -----~~~~~L~~gt~l~G~gIav~-nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 97 -----GGLPLLFLGTLLAGAGIAVI-NVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred -----ccHHHHHHHHHHHHhhHHHH-HHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 12222232223333222222 233346677888855 588999999999999999999999998887 7999888
Q ss_pred HHHHHHHHHHHH
Q psy11545 275 MYGCISLLGTIF 286 (337)
Q Consensus 275 ~~~~~~~~~~~~ 286 (337)
+.+..+++..++
T Consensus 170 ~WAl~allAl~~ 181 (395)
T COG2807 170 FWALLALLALLI 181 (395)
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 224
>KOG3626|consensus
Probab=98.45 E-value=6.3e-06 Score=74.47 Aligned_cols=153 Identities=11% Similarity=0.087 Sum_probs=79.5
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 91 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (337)
.|..-|++.+.+.++..+..+++|.... ...++.+++ +.+....+.+ ..+......++-++-....++
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp---~~~~~~~~~----~~~~~k~~~~-----~~~~~~~~~~~ikdfp~s~~~ 387 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKELP---KSQKRKRAR----DLHVLKTESG-----GAKSDKTFGKKIKDFPKSIKR 387 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCc---cccccchhh----hhcccccccc-----cccCCcchhhhHHHHHHHHHH
Confidence 5888889999999888888888876531 111110000 0000000000 000000000011233456677
Q ss_pred HhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchh-HHHH-HHHHHHHHHHHHHHHHHhhhcC--Chh
Q psy11545 92 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNN-NLAA-VIMGIVRLIFTIASCIMMKKMG--RRS 166 (337)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~~g--rr~ 166 (337)
+++||-+ +...+........+.++..|.|.+++.. |.+... .... .+.--+..+|.+++|+++.|+. -|.
T Consensus 388 ll~N~if-----~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~ 462 (735)
T KOG3626|consen 388 LLSNPIF-----MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARG 462 (735)
T ss_pred HhcCchH-----HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHH
Confidence 7777743 3333333333444777888999888764 776333 3333 3344455678889999998763 445
Q ss_pred hHHHHhHHHHHHHHH
Q psy11545 167 LTFISSIGCGVSMTG 181 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~ 181 (337)
.....++...+..+.
T Consensus 463 ~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 463 AAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHHHHHHHH
Confidence 554444444444443
No 225
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.44 E-value=1.7e-06 Score=75.69 Aligned_cols=126 Identities=8% Similarity=-0.010 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
+....+..++.++|..+......+..-|+++....++.++..+.-.......+... + ....+..+.--.+.....
T Consensus 258 ~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~---G--i~d~~f~lgd~~l~~~~~ 332 (433)
T PF03092_consen 258 GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDL---G--IPDQWFALGDTILEEVIG 332 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeee---C--cCCeEEEEEhHHHHHHHH
Confidence 45556667777777777776666667777776666555444332111100000000 0 011122222223333334
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 269 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (337)
...+.|. ...++|+.|+...|+.+++...+.++|..++..++..+.+..+.
T Consensus 333 ~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~v 383 (433)
T PF03092_consen 333 MIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGV 383 (433)
T ss_pred HHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444455 47788999999999999999999999999999998888877653
No 226
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.42 E-value=1.5e-05 Score=72.90 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=96.9
Q ss_pred HHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhh-hcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchh
Q psy11545 126 NIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMK-KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVS 203 (337)
Q Consensus 126 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (337)
++.+..+++... ...........-+..+++|+++| ++||++.+.++.++..++.+++.+.... ... . ....
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~-~~~-~-----~~~~ 85 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP-SSG-H-----PLHD 85 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc-ccc-c-----chHH
Confidence 334445666333 44444445555667788899999 5799999999998888888776652111 000 0 0011
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCcc---chhhhhhHHHHHHHHHHHHHHHHhHHHHHhc-------CCccch
Q psy11545 204 YLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK---VRGIVGGLTTCACHFFIFLTVKSYNMFQTHL-------TKEGTF 273 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~ 273 (337)
...++.+.+..+ ...+.-+...+...|.++++ .|...+.+.....++|+.+++.+.+++.+.. +|...|
T Consensus 86 ~~~l~gLaLia~-G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF 164 (654)
T TIGR00926 86 LLDLLGLALIAL-GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHHHHHHHh-hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence 122222333222 22333445467778888754 3667888888899999999999999887543 477778
Q ss_pred HHHHHHHHHHHHHhh
Q psy11545 274 LMYGCISLLGTIFFY 288 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (337)
.+.+++.+++.++..
T Consensus 165 ~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 165 GVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776665543
No 227
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.39 E-value=5.7e-06 Score=71.40 Aligned_cols=160 Identities=12% Similarity=0.104 Sum_probs=87.4
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCC-hhhHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (337)
......|.+.++++.|++..+ +...+...+..+++.++.|.++||.++ |+.+.+..++.++....... .
T Consensus 18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~---~------ 88 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF---S------ 88 (400)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH---h------
Confidence 445666778889999998555 899999999999999999999999865 55665555555544433322 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHh-HHHHHhcCCc---
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY-NMFQTHLTKE--- 270 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~--- 270 (337)
...+..+....++ ..+.....|+..++..+... .++.-+|-.-..+.+|-+++.... +.+....+..
T Consensus 89 ------~~f~~~~~~~~l~-~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~ 159 (400)
T PF03825_consen 89 ------SSFWWLFVIMLLF-SFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTS 159 (400)
T ss_pred ------ccHHHHHHHHHHH-HHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 1223333333333 22333344555555555543 233444444545555544443322 2233322222
Q ss_pred cchHHHHHHHHHHHHHhheeccCCC
Q psy11545 271 GTFLMYGCISLLGTIFFYVYLPETK 295 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~e~~ 295 (337)
..+++.++..++.... .+.+|+++
T Consensus 160 ~~~~i~~~~~~ll~~~-~l~lp~~~ 183 (400)
T PF03825_consen 160 LIFYIAAILSLLLAGF-ALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHHHHHH-HHhCCCCc
Confidence 2344444444333322 33456654
No 228
>KOG2615|consensus
Probab=98.31 E-value=1.8e-05 Score=65.60 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=70.3
Q ss_pred hhcCCC-chhHHHHHHHHHHHHHHHHHHHHHhhhcC--ChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHH
Q psy11545 129 KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG--RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYL 205 (337)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (337)
...|++ .+++......++.+.+.........|+.. -+-.+..++.++.-..+++.. ......
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~---------------~~~~~~ 354 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL---------------ARTPVV 354 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc---------------cccchh
Confidence 344665 33466666666666555555555555554 333333333222222222222 122223
Q ss_pred HHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 206 PVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
......+..+..... .+....++....|.++||++.|+....+.++-++||.+.|.+...
T Consensus 355 l~~~s~l~sf~~A~~-vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASV-VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred hhHHHHHHHHHHHHh-hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 333333333333333 344467888899999999999999999999999999998876553
No 229
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.26 E-value=7.7e-06 Score=75.04 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHH-HHHHHHHHHHHHhhhcC
Q psy11545 87 KETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGI-VRLIFTIASCIMMKKMG 163 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~-~~~~~~~~~g~l~d~~g 163 (337)
...++++++|.++...+...+... ....+..+.|.++++ .|++... +.......+ +.+++.+++|+++||++
T Consensus 321 ~~~~~Ll~n~~f~~~~l~~~~~~~-----~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~ 395 (633)
T TIGR00805 321 KIIKRLLCNPIYMLVILAQVIDSL-----AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFK 395 (633)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeec
Confidence 455677888765543333333222 245566788888775 5776444 555555444 56789999999999998
Q ss_pred C--hhhHHHHhHHHHHHHHH
Q psy11545 164 R--RSLTFISSIGCGVSMTG 181 (337)
Q Consensus 164 r--r~~~~~~~~~~~~~~~~ 181 (337)
+ |+.+..+.++..++.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 396 LNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 4 45666666555555443
No 230
>PRK09848 glucuronide transporter; Provisional
Probab=98.18 E-value=3.1e-05 Score=68.54 Aligned_cols=55 Identities=7% Similarity=0.139 Sum_probs=38.5
Q ss_pred hHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc----CChhhH-HHHhHHHHHHH
Q psy11545 125 VNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM----GRRSLT-FISSIGCGVSM 179 (337)
Q Consensus 125 ~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~~~ 179 (337)
+.++.+ .|++... +....+..+...+..++.|+++||. |||+.. ..+.+...+..
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 334444 4887555 8888888999999999999999986 777655 44444444333
No 231
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.17 E-value=2.3e-05 Score=67.78 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN--NLAAVIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
++.+..+++.. +...++.....+|++-...|...+.++..-+.+. +..-++..+.+.++++..|++-.++.+-
T Consensus 254 ~~~~~y~n~~v-----l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~ 328 (511)
T TIGR00806 254 ELVTIYRNPQL-----LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW 328 (511)
T ss_pred HHHHHhcCcch-----hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh
Confidence 34444555433 3344444555555677777777777665332221 4555566667777888889986655443
Q ss_pred hhHHHHhH--HHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhh
Q psy11545 166 SLTFISSI--GCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 243 (337)
Q Consensus 166 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 243 (337)
..+.++.+ +.+...+++.. ..+.+...+...++...+.... ++...-++.....+.-|..+|
T Consensus 329 ~~l~l~v~s~~~~gll~~m~~---------------t~~Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFG 392 (511)
T TIGR00806 329 SKLLIAVVSAIQAGLVFWMSQ---------------SHDIWVLYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFG 392 (511)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------------ccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEe
Confidence 23333322 22222222222 2356666666666666665543 344455555555566688999
Q ss_pred HHHHHHHHHHHHHH
Q psy11545 244 LTTCACHFFIFLTV 257 (337)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (337)
+++++..+-..+..
T Consensus 393 iNtfvAl~LQtilT 406 (511)
T TIGR00806 393 INTFVATALKTIIT 406 (511)
T ss_pred cHHHHHHHHHHheE
Confidence 98877666555544
No 232
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.16 E-value=3.7e-05 Score=67.36 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=93.1
Q ss_pred hHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-----CChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy11545 125 VNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-----GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198 (337)
Q Consensus 125 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
+.+.++.|++... .....+..+ --..-++.|.++|-+ .||+-++++.++..++.+.++.....
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~---------- 82 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS---------- 82 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc----------
Confidence 3444556776444 222222222 234567889999976 35555666666665555555542211
Q ss_pred CcchhHHHHHHHHHHHHHHhccccchhhhhhcccC---CccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY---PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
..+.....+.+.+...+.... -.+.-+...|.. |.+ ||...+.......+|++++..+.|.+.+..+++..|.+
T Consensus 83 -~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 83 -ESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred -cchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 011122222222222222222 233356666664 433 78888888889999999999999999999999999988
Q ss_pred HHHHHHHHHHHhheeccC
Q psy11545 276 YGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e 293 (337)
.+++..+..+..+++.+|
T Consensus 160 ~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 888877776665666666
No 233
>KOG2563|consensus
Probab=98.12 E-value=4.7e-05 Score=64.58 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHH-HHHHH
Q psy11545 137 NNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML-MTFTA 215 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 215 (337)
..+.+.++.+..++..+.+.|+.||+|-|....++....+++..+=...... .. ....+-.+... -....
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p---~v------~~~f~~~l~~~Gq~iaa 151 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP---FV------PPLFRRPLTHTGQSIAA 151 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc---cc------cccchhhhhHHhHHHHH
Confidence 3788999999999999999999999999999999999988888765541111 00 01111111111 11111
Q ss_pred HHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 216 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 216 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
........++.-...-+||+++|+++..+..+.+.+|.+++..+-+.+..+
T Consensus 152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 111111222233455689999999999999999999999987776666554
No 234
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.06 E-value=2.7e-05 Score=49.72 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=50.5
Q ss_pred cCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHH
Q psy11545 115 SGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIG 174 (337)
Q Consensus 115 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 174 (337)
.+...+..|.+.++++.|++... +....+..+..+++.+++|.++||+++++........
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 34666778888899999998666 8999999999999999999999999999887765543
No 235
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.06 E-value=0.00027 Score=62.50 Aligned_cols=144 Identities=14% Similarity=0.108 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHH-HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 139 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGC-GVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
...++..+...+..++.|-++|+-++||.++....+. .++...+.+. . ....+...++..+...++
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v--~-----------~~~~~~~~~l~iia~v~~ 140 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV--S-----------PGQWWLALVLFIIANVGY 140 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh--C-----------cchHHHHHHHHHHHHHHH
Confidence 4556667777788888999999998887766555443 3344433331 1 112233333333333334
Q ss_pred hccccchhhhhhcccCCccch--------------------------hhhhhHHHHHHHHHHHHHHHHhHHHHHhc----
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVR--------------------------GIVGGLTTCACHFFIFLTVKSYNMFQTHL---- 267 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 267 (337)
..+ .....++++|+.+++.+ ++..+.....+++|+.+.-.+.-.+....
T Consensus 141 ~~~-~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~ 219 (477)
T PF11700_consen 141 EAS-NVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTA 219 (477)
T ss_pred HHH-HHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 333 34456899999998888 89999999999999888766654443322
Q ss_pred ----CCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 268 ----TKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 268 ----g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
..+..+.+.++..++..+..++++||.++
T Consensus 220 ~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 220 SNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 23445666666656666665667777644
No 236
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.03 E-value=0.00019 Score=52.78 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
.....+......+++++.+.+.+++|.|+.++++.+...+-...... .+.+..+..-.+.+.+.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------~~~~~l~~~s~l~G~~~ 103 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------PNSYTLYPASALLGFGA 103 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHhhhh
Confidence 55666677778888999999999999999999988777755544333 23444444444555555
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHH
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNM 262 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 262 (337)
+..|.+. -.++.+...++.|++-.++...+...+.++|..+.-.
T Consensus 104 a~lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 104 ALLWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHhhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 5788888888899998888888888777777655433
No 237
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.01 E-value=0.0016 Score=55.13 Aligned_cols=123 Identities=10% Similarity=0.003 Sum_probs=86.0
Q ss_pred cCCCchh-HHHHHHHHHHHHHHHHHHHHHhh-hcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHH
Q psy11545 131 AGAHVNN-NLAAVIMGIVRLIFTIASCIMMK-KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 208 (337)
Q Consensus 131 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
+|++..+ ...+...+.+.++|....|++.. |.++++...+++..++++..++...... .+.+....
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~------------~~~~~~~~ 306 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL------------GSPWLFRP 306 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc------------ccchHHHH
Confidence 4777444 77888888899999988888766 7778888778888777777665553322 23444444
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 209 MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
....++.+.+... ...-+...++.+++..|+.+|.-...+.++..++..+.+.+.|-
T Consensus 307 ~~~l~G~g~G~f~-vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 307 GVFLLGLGNGLFT-VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHHHhhhHHH-HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333332 22246677888888899999999999988888888888877763
No 238
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.01 E-value=7.6e-05 Score=64.61 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=98.7
Q ss_pred hhccchHHHhhc-CCCchh-HHHHHHHHHHHHHHHHHHHHHhhh----cCChhhH-HHHhHHHHHHHHHHHHHHHHhcCC
Q psy11545 120 VTFYAVNIFKDA-GAHVNN-NLAAVIMGIVRLIFTIASCIMMKK----MGRRSLT-FISSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 120 ~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
...|..+++.+. |++... +....+.=+.-.+.-++.|.++|| +||++.. +.+.+..++...++.. .|+.
T Consensus 31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~---~p~~- 106 (467)
T COG2211 31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFI---TPDF- 106 (467)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHc---CCCc-
Confidence 444555555554 776443 666667777778888999999995 6775554 4444555554444333 1110
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCC-ccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc----
Q psy11545 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL---- 267 (337)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 267 (337)
.. ........+....+..++.....|- .++.+|+.+ +++|....+.-..+..+|..+...+.+++....
T Consensus 107 -~~----~~k~~ya~vtY~l~~l~YT~vniPy-~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~ 180 (467)
T COG2211 107 -SM----TGKLIYALVTYMLLGLGYTLVNIPY-GALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGD 180 (467)
T ss_pred -cc----CcchHHHHHHHHHHHHHHHheeCch-hhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 00 1233334444445555555443333 466777654 578999999999999999888888888887654
Q ss_pred ---CCccchHHHHHHHHHHHHHhheeccC
Q psy11545 268 ---TKEGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 268 ---g~~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
||+....+++++..+..+++++-.+|
T Consensus 181 ~~~g~~~~~~~~~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 181 KALGYQGTALVLGVIGVILLLFCFFNVKE 209 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555544444
No 239
>KOG2816|consensus
Probab=98.01 E-value=0.00017 Score=63.19 Aligned_cols=120 Identities=9% Similarity=0.035 Sum_probs=85.8
Q ss_pred hcCCCchh-HHHHHHHHHHHHHHHHHHH-HHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHH
Q psy11545 130 DAGAHVNN-NLAAVIMGIVRLIFTIASC-IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPV 207 (337)
Q Consensus 130 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (337)
..+++.+. ....+..+..+.++.++.. .+...+|-|+....|+....+....+++ ....|...
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af---------------~~~~w~~~ 335 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF---------------ATETWMMF 335 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH---------------hccchhhh
Confidence 34676555 5566666777777776665 7788899999888888888888887777 12233322
Q ss_pred HHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 208 LMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
....... .+....+...+.++-..+++.+|++.++...+..+.+.++|.+.+.+...
T Consensus 336 -~~~v~~~-~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 336 -AAGVVVA-LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred -HHHHHHH-hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2222322 23333455578888888999999999999999999999999998887643
No 240
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.00 E-value=0.0011 Score=58.84 Aligned_cols=125 Identities=11% Similarity=0.017 Sum_probs=76.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCC--hh-----hHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhH
Q psy11545 132 GAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGR--RS-----LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 204 (337)
Q Consensus 132 g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (337)
|++..+.+..++..+.-++.+++.+++=.|..| |. =+.+++++.+++.+.+.+.....+++ ...+.
T Consensus 305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~-------~~~s~ 377 (493)
T PRK15462 305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY-------GHSSL 377 (493)
T ss_pred ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCcCH
Confidence 444445676777777777777776666555532 21 15567777777766665533321110 01233
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHH-HHHHHHHHHHhHHH
Q psy11545 205 LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC-HFFIFLTVKSYNMF 263 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~ 263 (337)
..++....+....-....|+..+.++++.|++.||..+|+..... .+|..++..+.+..
T Consensus 378 ~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 378 PLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455566678898999999999999999999986533 46666665554443
No 241
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.96 E-value=8.4e-05 Score=63.27 Aligned_cols=135 Identities=9% Similarity=0.055 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCccchhccchHHHhhcCCC-ch---hHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhH--HHH
Q psy11545 103 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VN---NNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSI--GCG 176 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~---~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~--~~~ 176 (337)
++...++.....+|+.....|...+.++..-+ .. .+..-....+.+.++++..|++..++.+..-+..+.. +.+
T Consensus 249 ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a 328 (412)
T PF01770_consen 249 LLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQA 328 (412)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHH
Confidence 34444555555556777777777777776211 11 1555566667777788888888666655443333332 233
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHH
Q psy11545 177 VSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFI 253 (337)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 253 (337)
...+++.. ..+.+.......++........ ++...-++.....+.-|..+|++.+...+-.
T Consensus 329 ~~L~lm~~---------------t~~Iwv~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 329 GLLFLMSF---------------TGNIWVCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 33333333 1345555555555555544432 3333333344444555777777665544433
No 242
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.94 E-value=0.00025 Score=59.86 Aligned_cols=121 Identities=8% Similarity=-0.038 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhcC-----ChhhHHH-HhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccc-c
Q psy11545 150 IFTIASCIMMKKMG-----RRSLTFI-SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGY-L 222 (337)
Q Consensus 150 ~~~~~~g~l~d~~g-----rr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 222 (337)
+.....|+.||+.+ ||..+++ +....+.+..+..+....-.....+.+. ............+...+.+... .
T Consensus 29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~-~~~~g~~~a~l~F~l~G~G~~~s~ 107 (403)
T PF03209_consen 29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG-PFWLGLALAALAFLLYGLGVHASG 107 (403)
T ss_pred HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc-ccHHHHHHHHHHHHHHHhhHhHhH
Confidence 35778899999998 7766554 4444444444443332221111111100 1112222222222222222222 2
Q ss_pred chhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Q psy11545 223 VVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 271 (337)
Q Consensus 223 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (337)
....+++.|..|++.|+.+.++.....-+|.+++..+.+.+.+.+....
T Consensus 108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r 156 (403)
T PF03209_consen 108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER 156 (403)
T ss_pred HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 2335889999999999999999999999999999999999988765433
No 243
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.89 E-value=0.0019 Score=55.24 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=81.7
Q ss_pred hccchHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy11545 121 TFYAVNIFKD-AGAHVNN--NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197 (337)
Q Consensus 121 ~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
.+..|++... .|++.++ ....-+..-..++..++...+.|.+|-|++++.+.+...+...++.+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~------------- 90 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF------------- 90 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------------
Confidence 4444555554 5776444 23333334445666777888999999999999988877777666655
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
..+.....+.-++++...+. -...++|+=...|+++--++.+.+.....+|..++..++..+...
T Consensus 91 --~~sv~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 91 --GTSVLAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred --HCcHHHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12233333333333333322 334456776677888777788888888888888888777766653
No 244
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.84 E-value=0.0032 Score=54.68 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=84.8
Q ss_pred hccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11545 121 TFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 199 (337)
Q Consensus 121 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
...+..++...|++... +..-....+.++.|+++..++.+|+|..+.-.++......+..+.......+..+..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~----- 352 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFS----- 352 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCch-----
Confidence 33445556666888555 778888889999999999999999999888888877776666555554444222000
Q ss_pred cchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHH
Q psy11545 200 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 257 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 257 (337)
..+....+......-.+. .++--...-++.|..|+++||...|+-+..+++...+.-
T Consensus 353 ~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred hhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 011111222222222211 222233356788999999999999999999888776543
No 245
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.80 E-value=0.0018 Score=56.91 Aligned_cols=128 Identities=5% Similarity=0.016 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC------CCcch--------
Q psy11545 138 NLAAVIMGIVRLIF-TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK------FPAFV-------- 202 (337)
Q Consensus 138 ~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-------- 202 (337)
.+......+...+. .++.+++++|++|++++-+.........+++++......+....++ .....
T Consensus 46 ~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 125 (472)
T TIGR00769 46 PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAI 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHH
Confidence 34444444444444 7888999999999999888777776666666654332111100000 00000
Q ss_pred -hHHHHHHHHHHHHHHhccccc-hhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q psy11545 203 -SYLPVLMLMTFTAASTIGYLV-VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 265 (337)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (337)
..+....+.+..-.++....+ +.|.+++|++..++-.+-.++....+++|..+++.+..++.+
T Consensus 126 ~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 126 LRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222222333333333333 668999999999999999999999999999999988887763
No 246
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.79 E-value=4.7e-06 Score=74.54 Aligned_cols=175 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhc-CCCchh-HHHH-HHHHHHHHHHHHHHHHHhhhc
Q psy11545 86 FKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNN-NLAA-VIMGIVRLIFTIASCIMMKKM 162 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~~ 162 (337)
....+++++|+.+ +...+..........++..+.|.+++.. +.+... .... .+.-.+..+|.+++|++..|+
T Consensus 295 ~~~l~~Ll~Np~f-----~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~ 369 (539)
T PF03137_consen 295 PKALKRLLTNPVF-----MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF 369 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe
Confidence 3455566666643 3333333333444667788888887754 665333 3333 333446678899999999987
Q ss_pred C--ChhhHHHHhHHHHHHHHHHHH--HHHHhcC----CCCCC-------C------------------------CCc-ch
Q psy11545 163 G--RRSLTFISSIGCGVSMTGLGL--YIFATKD----FWPEY-------K------------------------FPA-FV 202 (337)
Q Consensus 163 g--rr~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~-------~------------------------~~~-~~ 202 (337)
. .|..+....+...++.+.+.. +..=++. -..++ + ... ..
T Consensus 370 kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~ 449 (539)
T PF03137_consen 370 KLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCN 449 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCccccc
Confidence 4 344444444333333332111 1000000 00000 0 000 01
Q ss_pred h-HHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHH-HHHHHHHHhHHHHHh
Q psy11545 203 S-YLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHF-FIFLTVKSYNMFQTH 266 (337)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 266 (337)
. ...++..++.....+....|. ...+-...|+++|+.|.|+...+..+ |.+-+|.++|.++|.
T Consensus 450 ~~~~Fl~~~~~~~~~~~~~~~p~-~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 450 KLIPFLILLFILSFFTFMSQVPS-TLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhcccch-heeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 1 112222222222223333333 34555788999999999999977665 778889999998885
No 247
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.71 E-value=0.0021 Score=53.25 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=87.2
Q ss_pred hhccchHHHhhcCCCc---hhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11545 120 VTFYAVNIFKDAGAHV---NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 196 (337)
Q Consensus 120 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
.....+.+..+.+.+. ..........+...++.++.|.+.||+|||+.+..+.....++.+...+ .
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~---~-------- 89 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL---A-------- 89 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh---C--------
Confidence 3344455555554443 2467777778888888899999999999997777776553333333333 1
Q ss_pred CCCcch-hHHHHHHHHHHHHHHhccccchhhhhhcccCCc-cchhhhhhHHHH-HHHHHHHHHHHHhHHHHHh--cCCcc
Q psy11545 197 KFPAFV-SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT-KVRGIVGGLTTC-ACHFFIFLTVKSYNMFQTH--LTKEG 271 (337)
Q Consensus 197 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~g~~~ 271 (337)
.. ............+.......+....+..|.+|. +.|+...+.... ...++..+++.+.+.+... .+|+.
T Consensus 90 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 90 ----PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred ----ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11 122222222222222223456667889999987 678888888877 4667777777666555543 46666
Q ss_pred chHHHHHH
Q psy11545 272 TFLMYGCI 279 (337)
Q Consensus 272 ~~~~~~~~ 279 (337)
.+......
T Consensus 166 ~~~~~~~~ 173 (338)
T COG0477 166 AFLLAALL 173 (338)
T ss_pred HHHHHHHH
Confidence 44444333
No 248
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.55 E-value=1.2e-05 Score=71.99 Aligned_cols=176 Identities=13% Similarity=0.037 Sum_probs=1.2
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCC--C
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFW--P 194 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 194 (337)
.......+.+-+.++++... +++.+.+-++.++..++..++.+|..|-+.+-.+.++++++.+++++-......+. .
T Consensus 20 g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 20 GYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 33444455566667886444 88888899999999999999999887777888888889888888775322211110 0
Q ss_pred CC-----------------------------CCCcchhHHHHHHHHHHHHHHhcc---ccchhhhhhcccCCccchhhhh
Q psy11545 195 EY-----------------------------KFPAFVSYLPVLMLMTFTAASTIG---YLVVPWVMIGEVYPTKVRGIVG 242 (337)
Q Consensus 195 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~ 242 (337)
.. +.........+.++.+.....+.+ ..++..+|+-|..+++.-+...
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 00 000111112223333333333333 3455668999999999889899
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHh---------------------cC-CccchHHHHHHHHHHHHHhheeccCC
Q psy11545 243 GLTTCACHFFIFLTVKSYNMFQTH---------------------LT-KEGTFLMYGCISLLGTIFFYVYLPET 294 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (337)
|+......+|.++|-.+.+...+. .| |+.-|++.+++.++..+. +++.|+.
T Consensus 180 Gi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip-l~~FPk~ 252 (539)
T PF03137_consen 180 GILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP-LFFFPKK 252 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHcCCcc
Confidence 999988888887776666554421 12 555666777766666554 3444543
No 249
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.47 E-value=0.025 Score=49.31 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=100.6
Q ss_pred ccchhccchHHHhh--cCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCh-------hhHHHHhHHHHHHHHHHHHHHH
Q psy11545 117 VNPVTFYAVNIFKD--AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRR-------SLTFISSIGCGVSMTGLGLYIF 187 (337)
Q Consensus 117 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-------~~~~~~~~~~~~~~~~~~~~~~ 187 (337)
.+.+..|.....+. .|++....+..++..+.-++.+++..++..+.+++ .-+-+++.+++.+.+++.....
T Consensus 304 ~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~ 383 (498)
T COG3104 304 GSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGI 383 (498)
T ss_pred cchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 24555557777887777777887777777774443 1234455555555555554322
Q ss_pred HhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHH-----
Q psy11545 188 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNM----- 262 (337)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~----- 262 (337)
....+ ....+.+.++....+....-....|+..+++....|+...+..++........+..++..+.+.
T Consensus 384 ~~~~~------~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~ 457 (498)
T COG3104 384 WFGGP------SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD 457 (498)
T ss_pred hhcCC------CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc
Confidence 11110 0123444555555666666777788888999999999988888888888887787777666652
Q ss_pred -HHHhcCCccchHHHHHHHHHHHHHhhe
Q psy11545 263 -FQTHLTKEGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 263 -~~~~~g~~~~~~~~~~~~~~~~~~~~~ 289 (337)
..+.......|..++...++..+....
T Consensus 458 ~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 458 PAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 223333444666666666655554433
No 250
>KOG3098|consensus
Probab=97.41 E-value=0.015 Score=50.68 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCC---CCCCCCcchhHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMK---KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFW---PEYKFPAFVSYLPVLMLM 211 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d---~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 211 (337)
.......+++..++....+.+.+ ++||++.+.++..+..+..++....... +.+. ++.+..............
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~-dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPN-DAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccc-cCCCCCCcccccccccchhHHHHHH
Confidence 44455567777777777777765 5788888888887776666554442221 1111 111011112232333333
Q ss_pred HHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHH
Q psy11545 212 TFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNM 262 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 262 (337)
...+..-..+....+.++...+| +.|..+.++.-.-..+++.++-...+.
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33344444455666788888884 668888888888777777665544443
No 251
>KOG3626|consensus
Probab=97.38 E-value=0.0017 Score=59.38 Aligned_cols=180 Identities=13% Similarity=0.047 Sum_probs=112.7
Q ss_pred cchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCC----
Q psy11545 118 NPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDF---- 192 (337)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 192 (337)
..+..-.+.+-+.++++... +++...+-++..+...+..+..-|..|-+.+-+++++++++.+++++-....+.+
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~ 193 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL 193 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence 33334444444556776333 7777778888888888999999998888899999999999998877632221110
Q ss_pred ------CCCC--------------------CCC---cchhHHHHHHHHHHHHHHhc---cccchhhhhhcccCCccchhh
Q psy11545 193 ------WPEY--------------------KFP---AFVSYLPVLMLMTFTAASTI---GYLVVPWVMIGEVYPTKVRGI 240 (337)
Q Consensus 193 ------~~~~--------------------~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~r~~ 240 (337)
...+ +.. ........+.+++.....++ ...++..+|+-|...++.-..
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence 0000 000 01121122223333333333 335556688889888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHhc-------------------CCccchHHHHHHHHHHHHHhheeccCCCCCC
Q psy11545 241 VGGLTTCACHFFIFLTVKSYNMFQTHL-------------------TKEGTFLMYGCISLLGTIFFYVYLPETKNKT 298 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 298 (337)
-.|+..+...+|.++|-.+++.....+ .|+.-|++.+.+.++..+. +++.|++.+++
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p-~f~fPk~lp~~ 349 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP-LFFFPKELPKS 349 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-HHhCcccCccc
Confidence 899999888888888877776665421 1444677777777777665 45567665544
No 252
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=97.29 E-value=0.0099 Score=47.18 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=18.0
Q ss_pred hHHHHHHHhhHHHHHHHHHhccc
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLM 34 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~ 34 (337)
+||+++.+.+++.++-+++..++
T Consensus 39 ~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 39 NWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999998887766665543
No 253
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.22 E-value=0.0029 Score=40.87 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=57.3
Q ss_pred chhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHH
Q psy11545 119 PVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGL 184 (337)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 184 (337)
.+....|.+.++.+++.+. ++..+...++.++|.+...++.++.++++.+..+.+...+..+.+++
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778889999998665 89999999999999999999999988888888888888888888777
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.21 E-value=0.0083 Score=51.37 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy11545 204 YLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMF 263 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (337)
.+.++.+++..+..+.......+..+.|-.|+++|..++|.......+|..++..+.-++
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444444466677778899999999999999998888877665443
No 255
>KOG3810|consensus
Probab=97.04 E-value=0.028 Score=46.64 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=92.5
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCC-chh--HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy11545 88 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNN--NLAAVIMGIVRLIFTIASCIMMKKMGR 164 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~--~~~~~~~~~~~~~~~~~~g~l~d~~gr 164 (337)
+..+..++|.. ...-++.....+|++-..+|...+.++..-. .+. +..-++..+.+.++.++.|.+.-.+.|
T Consensus 226 ~l~~~y~np~l-----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r 300 (433)
T KOG3810|consen 226 DLQECYSNPRL-----LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR 300 (433)
T ss_pred HHHHHhcCchh-----hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch
Confidence 34444555533 3344455555556777777777777766321 111 344455667777888889998766655
Q ss_pred hhhHH--HHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhh
Q psy11545 165 RSLTF--ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVG 242 (337)
Q Consensus 165 r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 242 (337)
..-++ ++.+..+...+.+.. ....|...+...++........ ++...-+++....+.-|..+
T Consensus 301 ~g~~ll~~~s~~~agllf~m~~---------------t~~Iw~~Ya~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvF 364 (433)
T KOG3810|consen 301 WGDLLLAVGSAVQAGLLFIMAQ---------------TQHIWVCYAGYVLFRVIYQLTI-TIATFQIARNLSSELFGLVF 364 (433)
T ss_pred hhHHHHHHHHHHhhhhhhhhhc---------------ccceehhhhhHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeee
Confidence 53333 332233322222222 2345555555555555555443 33344444555556668888
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhcC-----------CccchHHHHHHHHHHHHHh
Q psy11545 243 GLTTCACHFFIFLTVKSYNMFQTHLT-----------KEGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~ 287 (337)
|+..++.-+-..+... ...|.-| +..-|.+.+++.+++..+.
T Consensus 365 GiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 365 GINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred ehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence 8887665544433322 2233211 2234666777666665543
No 256
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.03 E-value=0.0016 Score=54.49 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh----------------cCC
Q psy11545 206 PVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH----------------LTK 269 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~ 269 (337)
.++..++.+.+.+. ..+..+.+++++.|++.+++.+++...++.+|..++|.+.+.+... ..|
T Consensus 13 ~l~~~f~~g~G~~~-lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (310)
T TIGR01272 13 FLGALFVLASGLTI-LQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKV 91 (310)
T ss_pred HHHHHHHHHhhHHH-HHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHH
Confidence 33333333333333 3456689999999999999999999999999999999999988732 356
Q ss_pred ccchHHHHHHHHHHHHHh-heeccCC
Q psy11545 270 EGTFLMYGCISLLGTIFF-YVYLPET 294 (337)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~-~~~~~e~ 294 (337)
+.++++.+++.++..++. ..-.||.
T Consensus 92 ~~~yl~ia~~~~~~~i~~~~~~~p~~ 117 (310)
T TIGR01272 92 HTPYLLLAGALAVLAIIFAFLPLPEL 117 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 777776666544444332 2334554
No 257
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.95 E-value=0.037 Score=48.24 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHH----HHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMT----GLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTF 213 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (337)
.......++..++.+...|...||..|.+....+.+..-++.. ++.......... .. ........+.....+
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~-~~---~~~~~~~l~~~~~~~ 116 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS-SQ---SSWLFIALFALLILL 116 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc-cc---cchHHHHHHHHHHHH
Confidence 4455556667777788888999999999887776655433222 222222221100 00 001111111111122
Q ss_pred HHHHhccccchhhhhhccc----C--CccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHh
Q psy11545 214 TAASTIGYLVVPWVMIGEV----Y--PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 214 ~~~~~~~~~~~~~~~~~e~----~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 287 (337)
+.....+......+.--|+ . +++......+...-+-.+...++|.+.|.+.+..+......+.++..+++..+=
T Consensus 117 ~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 117 GAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 2111111111111122222 2 233445555555666677899999999999998887777777777777776654
Q ss_pred heec
Q psy11545 288 YVYL 291 (337)
Q Consensus 288 ~~~~ 291 (337)
++++
T Consensus 197 y~~l 200 (432)
T PF06963_consen 197 YFLL 200 (432)
T ss_pred HHHH
Confidence 4443
No 258
>KOG0637|consensus
Probab=96.87 E-value=0.0013 Score=56.24 Aligned_cols=160 Identities=11% Similarity=-0.010 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh----cCChhhHHHH-hH
Q psy11545 100 KPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK----MGRRSLTFIS-SI 173 (337)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~-~~ 173 (337)
+.++......+..+++ +..-..|.|.++.+.|.+..- +..-...-+.+++..++.|..+|| +||||.++.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3344444455555554 555667778888888886332 444445556677888899999995 6887766554 44
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCc--chhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhh-hhhHHHHHHH
Q psy11545 174 GCGVSMTGLGLYIFATKDFWPEYKFPA--FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGI-VGGLTTCACH 250 (337)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~ 250 (337)
..+++.+++.+.......-.++..... ......++.+.+.-........|. -++..|+...+.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 555555555554322110000000000 111122223333333333343444 789999887777777 9999999988
Q ss_pred HHHHHHHHHhH
Q psy11545 251 FFIFLTVKSYN 261 (337)
Q Consensus 251 ~~~~~~~~~~~ 261 (337)
+|+.+|-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88888755544
No 259
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.84 E-value=0.022 Score=48.60 Aligned_cols=144 Identities=13% Similarity=-0.026 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHH-HHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIG-CGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 216 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
+...++.++...+-+++-|.++|+.|+||.....+.. ..++.+.+.+ .+ +.+.++..+.+......
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~---i~----------~~s~~~~~l~~~il~~i 127 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWF---IP----------PGSYLLLLLLFLILASI 127 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHH---hC----------CCchHHHHHHHHHHHHH
Confidence 3455566666677788889999999987766554433 3333333333 21 11233333333333332
Q ss_pred HhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHH-H-----------------HhcCCccchHHHHH
Q psy11545 217 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMF-Q-----------------THLTKEGTFLMYGC 278 (337)
Q Consensus 217 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~g~~~~~~~~~~ 278 (337)
..........+++.++.+++.-+...++....+++|+.+.-...-.. . +...-+.++.+.++
T Consensus 128 ~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~ 207 (438)
T COG2270 128 GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAAL 207 (438)
T ss_pred hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHH
Confidence 33233444568899999888778888887777777776554332111 1 12234555666666
Q ss_pred HHHHHHHHhheeccCC
Q psy11545 279 ISLLGTIFFYVYLPET 294 (337)
Q Consensus 279 ~~~~~~~~~~~~~~e~ 294 (337)
-.++..+-.++..++.
T Consensus 208 W~li~~iPm~~~v~~~ 223 (438)
T COG2270 208 WWLLFALPMILNVHDA 223 (438)
T ss_pred HHHHHHhHHHhccccc
Confidence 6665555555555543
No 260
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.80 E-value=0.019 Score=50.45 Aligned_cols=118 Identities=9% Similarity=-0.038 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCh-hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRR-SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 216 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
......+.++-.+|..+..+.. +-++| +.+.+..+.-.+..-++.+....++.+.+ ....+.+..++...+++.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p---~~~~~d~~~~~~~~l~gl- 384 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLP---VFFPGDAYFIILMLLFGF- 384 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCC---eeecccHHHHHHHHHHHH-
Confidence 3555666777777776554321 11222 13333333333333332221111111100 001233333333333333
Q ss_pred HhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHh
Q psy11545 217 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 260 (337)
Q Consensus 217 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 260 (337)
.++...+.+..+.++..++++|..+..+...+..+|-.+|+.+.
T Consensus 385 tnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 385 SNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred hhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33233455677888888889999888888888888877776553
No 261
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.76 E-value=0.025 Score=50.15 Aligned_cols=119 Identities=11% Similarity=0.104 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC------CC--cchh-------HHHHHHHH
Q psy11545 147 VRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK------FP--AFVS-------YLPVLMLM 211 (337)
Q Consensus 147 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~-------~~~~~~~~ 211 (337)
+.++...+..+++++++|.+++-+..........++++......+....+. .. ..-. .+....+.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 335556778899999999998877766666666666654332111100000 00 0000 01111112
Q ss_pred HHHHHHhcc-ccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q psy11545 212 TFTAASTIG-YLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 265 (337)
Q Consensus 212 ~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (337)
+..=.++.. ..-+-|.+++|.++.++..+-+++.....++|.++++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 223458999999999999999999999999999999988887777
No 262
>KOG2325|consensus
Probab=96.68 E-value=0.004 Score=54.46 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=48.3
Q ss_pred hhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHH
Q psy11545 226 WVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTI 285 (337)
Q Consensus 226 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 285 (337)
.+.-+|+..++.+++..++.......+..++|.+........|.++...+.++..++...
T Consensus 410 ~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 410 DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999999998888888988766555544444433
No 263
>KOG4686|consensus
Probab=96.51 E-value=0.00058 Score=54.64 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHH-HHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLM-LMTFTA 215 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 215 (337)
.+..++++.-+++-++++|++.|| +|-|...++-++...++.++++..... +..+.+.. -++++.
T Consensus 82 tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~-------------~aFw~M~~GRF~FGI 148 (459)
T KOG4686|consen 82 TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS-------------HAFWTMLAGRFLFGI 148 (459)
T ss_pred eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH-------------HHHHHHHhhheeecc
Confidence 566777888889999999999995 677766666666666666666652222 22222222 222222
Q ss_pred HHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 216 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 216 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
.+-+....-..|+.-++..+.-+.++|+......+|+.+--.+.+++.+..+
T Consensus 149 -GgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 149 -GGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred -CchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 2222333445788888988999999999999999998877777777777543
No 264
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.48 E-value=0.015 Score=50.11 Aligned_cols=117 Identities=13% Similarity=-0.055 Sum_probs=74.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCcc---chhhhh
Q psy11545 166 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK---VRGIVG 242 (337)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~ 242 (337)
++++++.++..++.+++.+....+..+ +........+.+.+...+.+ +.=|....+..|.++++ .|...+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~------~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP------SGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh------hhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhH
Confidence 456677777778777755533321100 00112233344444433333 44455578888888765 456677
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhhe
Q psy11545 243 GLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 289 (337)
.......++|+.++..+.+++.+..||...|.+.++..+++.+..+.
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999888887777765443
No 265
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=96.42 E-value=0.11 Score=45.64 Aligned_cols=44 Identities=5% Similarity=-0.121 Sum_probs=35.1
Q ss_pred hhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc
Q psy11545 224 VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL 267 (337)
Q Consensus 224 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (337)
...++-+.+.+|..-|+.|-+.|+..++|+-.-..+.-++.|.+
T Consensus 425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 33567778888999999999999999999877766666666653
No 266
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=96.27 E-value=0.0011 Score=55.48 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CChhhHHHHhHHHHHHHHHHHHHHHHhcCC-CCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 140 AAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDF-WPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
....+.++-.+|..+.++..-+. .+|++. +..+.-.+...++......|.++ .+. ...+.+..++...+++. .
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~---~~~~d~~~~i~~~l~g~-T 261 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPV---LFNSDAWFIILMLLFGF-T 261 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCC---cccchHHHHHHHHHHHH-c
Confidence 45567788888888777642111 234333 33333333222222221111100 000 01122333333333332 3
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 259 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 259 (337)
++-..+....+.++..++++|..+..+...+..+|-.+|..+
T Consensus 262 NGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 262 NGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -----HHHH---------------------------------
T ss_pred cchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333356667888898888888888777777777777666544
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.23 E-value=0.056 Score=46.44 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhc
Q psy11545 140 AAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTI 219 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
....-.+-.++..+++.++.+|+.-+.-..+..++++++.++.++ ..+.+..++...+... +.
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~---------------~~~v~~~l~Gv~las~--ss 126 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF---------------SPSVWVRLLGVVLASL--SS 126 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee---------------ccchhHHHHHHHHHhh--hh
Confidence 333344556667778888888876444444555566666666555 1233333333333333 33
Q ss_pred cccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC--ccchHHHHHHHHHHHHHhheeccC
Q psy11545 220 GYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK--EGTFLMYGCISLLGTIFFYVYLPE 293 (337)
Q Consensus 220 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~e 293 (337)
+.+-+.+.-.+..+++. +.+-.......++.+|+.....+.+ .|+ +..++....+.++..+..++.+|.
T Consensus 127 g~GE~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 127 GLGEVTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred hhhHHHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344344444566643 2333333444556666666554544 554 446666666655444444444543
No 268
>KOG3098|consensus
Probab=96.17 E-value=0.071 Score=46.69 Aligned_cols=106 Identities=6% Similarity=-0.107 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
+....+......+++++++.+.|+.|.|+.+.++........+.+.. .+.+..++.-.+.+.+.
T Consensus 53 y~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~----------------~N~y~~yfssallG~Ga 116 (461)
T KOG3098|consen 53 YYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF----------------PNSYYLYFSSALLGFGA 116 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh----------------cchHHHHHHHHHhhhhH
Confidence 45577888888999999999999999999999998888776666555 35666666666677666
Q ss_pred hccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHh
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 260 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 260 (337)
+.-+..- -.|++|..+++.+.+..++.-.+...+.++|....
T Consensus 117 allw~Gq-G~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 117 ALLWTGQ-GGYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred Hheeccc-ceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 6655444 57899999999999999998888888877775443
No 269
>KOG1237|consensus
Probab=96.07 E-value=0.86 Score=41.64 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=92.1
Q ss_pred chHHHhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHhhh-cCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC-----C
Q psy11545 124 AVNIFKDAGAHV-NNNLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE-----Y 196 (337)
Q Consensus 124 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 196 (337)
..++....+.+. ...-.............+++++++|. +||-+.+.++.++..++..++......+...... .
T Consensus 61 v~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~ 140 (571)
T KOG1237|consen 61 VTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPG 140 (571)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Confidence 333444444442 12233333344455667889999995 5888888888888888877666655443221100 0
Q ss_pred C--CCcchh-HHHHHHHHHHHHH-HhccccchhhhhhcccCCc----cchh--hhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 197 K--FPAFVS-YLPVLMLMTFTAA-STIGYLVVPWVMIGEVYPT----KVRG--IVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 197 ~--~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~----~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
+ -..... ...++...+.... ...+.-+....+-.|-++. +.+. .-+.......++|..++..+..+.-+.
T Consensus 141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN 220 (571)
T ss_pred CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 0 000111 1112222222222 2333344545677777772 2222 455566677778888888777777788
Q ss_pred cCCccchHHHHHHHHHHHHH
Q psy11545 267 LTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~ 286 (337)
.+|...|.+..+...++.++
T Consensus 221 ~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 221 VGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred ccceeeccHHHHHHHHHHHH
Confidence 89998888887777666554
No 270
>KOG3574|consensus
Probab=95.99 E-value=0.26 Score=41.79 Aligned_cols=46 Identities=9% Similarity=-0.092 Sum_probs=38.9
Q ss_pred hhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCC
Q psy11545 224 VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 269 (337)
Q Consensus 224 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (337)
...+..+.+.|+..-|+-+.+.|+..++|+-.-..+..++.|..++
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 3357788999999999999999999999998888888888876554
No 271
>PRK03612 spermidine synthase; Provisional
Probab=95.44 E-value=0.65 Score=42.02 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=32.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHH-hcCCccchHHHHHHHHHHH
Q psy11545 238 RGIVGGLTTCACHFFIFLTVKSYNMFQT-HLTKEGTFLMYGCISLLGT 284 (337)
Q Consensus 238 r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 284 (337)
-+...|-.+..+.+|+++|+.+.+.+.- ..|.....++.+.+.++..
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3556788888899999999988887664 5676555555555544444
No 272
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.80 E-value=0.69 Score=40.84 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=25.5
Q ss_pred ccchHHHhh--cCCCchh-HH---HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHh
Q psy11545 122 FYAVNIFKD--AGAHVNN-NL---AAVIMGIVRLIFTIASCIMMKKMGRRSLTFISS 172 (337)
Q Consensus 122 ~~~~~~~~~--~g~~~~~-~~---~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 172 (337)
--.|.++++ .+.+..+ +. ..-.+++=-+=+.++=...+.|+||||..++-.
T Consensus 21 gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~ 77 (544)
T PF13000_consen 21 GSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI 77 (544)
T ss_pred ccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence 466788877 3444222 21 112222211222223344556899999877643
No 273
>KOG3762|consensus
Probab=94.78 E-value=0.034 Score=49.00 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=50.6
Q ss_pred CccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHH
Q psy11545 116 GVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 179 (337)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 179 (337)
+...+...++.+..+.|++... +.+....-+..+++.+++|+++||+.+|+.++++..+..+..
T Consensus 26 ~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a 90 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTA 90 (618)
T ss_pred cccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3566677778889999998666 888888889999999999999999988777766655544433
No 274
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=94.58 E-value=1.4 Score=38.87 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCC---------CC-c-------chhHHHHHH
Q psy11545 147 VRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK---------FP-A-------FVSYLPVLM 209 (337)
Q Consensus 147 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~-------~~~~~~~~~ 209 (337)
+.++..++..++.+++.|.+++-..+.......+++++..+...+....++ .+ . .+.|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 456677888899999999998887777777777777765542221111110 00 0 011222222
Q ss_pred HHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q psy11545 210 LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 265 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (337)
..+.-.-......-+-|..+.|++..++-.+-+++.+...+++..+++.+..++.+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222222233557889999999999999999999999999999888887766
No 275
>KOG4332|consensus
Probab=94.27 E-value=0.15 Score=41.02 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=32.9
Q ss_pred HhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHH
Q psy11545 128 FKDAGAHV-NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 179 (337)
Q Consensus 128 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 179 (337)
++..|+.. +.+..........++...+.|-++||.|||+..+.-++...+++
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 44555542 33555444444556667778899999999997666555554444
No 276
>KOG3574|consensus
Probab=94.23 E-value=0.85 Score=38.86 Aligned_cols=68 Identities=9% Similarity=0.224 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhh-----hcCChhhHHHH
Q psy11545 100 KPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMK-----KMGRRSLTFIS 171 (337)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~~ 171 (337)
+.+..+.++...+..- .. +....|.+++..+.+... +.....+. -.---+++..++| |+|||+..++-
T Consensus 31 ~~illLl~LYllQGiP-~G-L~~~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIP-LG-LIGAIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhHHHHHHHHHHcCCc-hh-HhhhhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeee
Confidence 3444555555544332 33 333788888877766333 33222211 1112456666777 99999977654
No 277
>KOG1479|consensus
Probab=94.22 E-value=3.3 Score=35.77 Aligned_cols=48 Identities=6% Similarity=-0.074 Sum_probs=23.1
Q ss_pred hcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHH----HHHHHHHhhh
Q psy11545 114 FSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIF----TIASCIMMKK 161 (337)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~l~d~ 161 (337)
...++.+..-.+++..+......+......+.+...+. ...-.++.-|
T Consensus 31 LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 31 LLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred ccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666667777666533222433333333333333 3334444445
No 278
>KOG1479|consensus
Probab=93.57 E-value=0.55 Score=40.35 Aligned_cols=107 Identities=9% Similarity=-0.078 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q psy11545 144 MGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLV 223 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (337)
+.+.-.+|.+.+.++-++ +||. +.+..++-.+..-++.+..+.| .+ ....+.++.++....+ +....-..+
T Consensus 292 fN~~d~vG~~~a~~~~~~-~~r~-l~i~v~lR~lfiPlF~~cn~~~-~~-----v~~~~~~~~~~l~~~l-glsnGYlts 362 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWP-DPRK-LTIPVLLRLLFIPLFLLCNYPP-LP-----VVFESDGWFIFLMSLL-GLSNGYLTS 362 (406)
T ss_pred hHHHHHhhhhhhhcccCC-CCce-ehHHHHHHHHHHHHHHHhccCC-CC-----ceecCchHHHHHHHHH-HhccchHhh
Confidence 566667775555554333 3343 3333333333333333211110 00 0012334444333333 333334456
Q ss_pred hhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q psy11545 224 VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 259 (337)
Q Consensus 224 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 259 (337)
+...+.++-.|++++-.+..+.......|-+.|..+
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 667889999988887776666665555555555433
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=91.47 E-value=4 Score=36.13 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhhHHHH
Q psy11545 143 IMGIVRLIFTIASCIMMKKMGRRSLTFIS 171 (337)
Q Consensus 143 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 171 (337)
...+..++..+....+..|+..|.-+..+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~ 81 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGG 81 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHH
Confidence 33444444455555555565543333334
No 280
>KOG3880|consensus
Probab=91.03 E-value=0.52 Score=38.80 Aligned_cols=126 Identities=13% Similarity=0.195 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhhhc--CChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccc
Q psy11545 144 MGIVRLIFTIASCIMMKKM--GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGY 221 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (337)
-.+-.++.-+.+..+.||+ |.|. .+...+.+.+.++.++ ..+.+..+....+ ...+.+.
T Consensus 71 DilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVaf---------------s~s~~~sL~GV~~--aSissGl 131 (409)
T KOG3880|consen 71 DILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAF---------------SNSVPMSLLGVVF--ASISSGL 131 (409)
T ss_pred hhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEe---------------ccchhHHHhhhhh--hhhcCCc
Confidence 3444566677778888875 4453 3334455555555554 1223333333333 3344444
Q ss_pred cchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHH--hcCCccchHHHHHHHHHHHHHhheecc
Q psy11545 222 LVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT--HLTKEGTFLMYGCISLLGTIFFYVYLP 292 (337)
Q Consensus 222 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 292 (337)
+-+++.-.+..+|+..-+. ... ....++.+|..-...+.+ ....+.+.++...+.++.+...++.++
T Consensus 132 GEiTFL~lss~Y~~~~i~~---WSS-GTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~ 200 (409)
T KOG3880|consen 132 GEITFLALSSRYPSIVIAG---WSS-GTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK 200 (409)
T ss_pred ceeehhhhhccCCCceecc---ccC-CCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence 4555555555565443221 111 111223344333333433 234455677766666555554455444
No 281
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=89.23 E-value=1.9 Score=31.46 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=27.9
Q ss_pred HhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHH
Q psy11545 217 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFL 255 (337)
Q Consensus 217 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~ 255 (337)
++.+...+.|..++-..+++..|...|+-.+-.+++-..
T Consensus 107 Fg~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 107 FGLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 333444556777777788888899999998887776544
No 282
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=88.02 E-value=18 Score=32.58 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHH
Q psy11545 140 AAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGC 175 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 175 (337)
.....++..++..++++.+.+|+|-+....+.-++.
T Consensus 324 ~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~ 359 (491)
T PF03219_consen 324 FSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVI 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHH
Confidence 344456666666788899999999887766654333
No 283
>KOG4332|consensus
Probab=86.63 E-value=16 Score=29.89 Aligned_cols=139 Identities=9% Similarity=0.078 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCh--hhHHHHhHHHHHHHHHHHHHHH-HhcCCCCCCCCCcchhHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRR--SLTFISSIGCGVSMTGLGLYIF-ATKDFWPEYKFPAFVSYLPVLMLMTFT 214 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
+.....+.++.++|+-+..++..|-..| ..+.+...+.++...+...... .|+ .......++.++.+-
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~---------kes~~~s~i~F~~~E 355 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS---------KESPSESLIGFCLFE 355 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC---------cCCchHHHHHHHHHH
Confidence 6667777778888887777766543332 3444444444443333333221 111 123344466666666
Q ss_pred HHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHH
Q psy11545 215 AASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 215 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 286 (337)
...+..+.++ .-+-++..|.+.|++.+.+.-.=-++...++-.....-....+-+..|-++.+...+..+.
T Consensus 356 ~cvGlfwPSi-mkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 356 ACVGLFWPSI-MKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHhhcchHH-HHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence 6666665444 6777888999999887655543333322222111000011234455677776666655443
No 284
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=77.65 E-value=29 Score=29.63 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCccchhccchHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11545 106 MLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKK 161 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 161 (337)
.....+....-+.....|.|.+- ..+-+..-++....+.++.++|+.+..++..+
T Consensus 250 G~~qslFE~smy~FVflWtPaL~-~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 250 GLIQSLFEGSMYLFVFLWTPALD-PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHHHHHHheeeeeceec-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333555566777654 22222233788888888999998888765544
No 285
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.41 E-value=11 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhc-CChhhHHHHhHH
Q psy11545 145 GIVRLIFTIASCIMMKKM-GRRSLTFISSIG 174 (337)
Q Consensus 145 ~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~ 174 (337)
.+++++.....||+.||+ |.++..++.+.+
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 345555666778999986 566655444433
No 286
>KOG0637|consensus
Probab=76.81 E-value=3.9 Score=35.93 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhH
Q psy11545 139 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSI 173 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 173 (337)
+-..+..+...+.+....++.+|+|-|+.++.+..
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~ 370 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVN 370 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhH
Confidence 44566677777888888999999995555544444
No 287
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=76.66 E-value=23 Score=24.70 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGV 177 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 177 (337)
+.......++..++..+.+.+.|..|.+..+.+......+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 4556667788888888999999988877766554444433
No 288
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.84 E-value=16 Score=24.82 Aligned_cols=35 Identities=6% Similarity=0.080 Sum_probs=28.8
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 234 PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 234 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
.++.++.+.++-...-.+++++.....||+.+++-
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888888888889999999999999999763
No 289
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=74.28 E-value=66 Score=28.94 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=25.6
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHH
Q psy11545 141 AVIMGIV-RLIFTIASCIMMKKMGRRSLTFISSIGCGVSMT 180 (337)
Q Consensus 141 ~~~~~~~-~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 180 (337)
....++. .++...+++.+.+|.|-....++.-+++.+..+
T Consensus 327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~ 367 (509)
T COG3202 327 QIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGV 367 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444555 455567788899999988776665555544433
No 290
>KOG3810|consensus
Probab=73.46 E-value=19 Score=30.68 Aligned_cols=99 Identities=7% Similarity=-0.018 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhc
Q psy11545 151 FTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIG 230 (337)
Q Consensus 151 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (337)
.-+..=.+.|...-|++++.-.+.......++.+ + .+.+..-++=.+++... +.-...++|+=
T Consensus 58 ~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~-----g----------~sV~~mQvlE~FyG~~t--AaEIAYysYIY 120 (433)
T KOG3810|consen 58 GLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVF-----G----------PSVKAMQVLEFFYGPAT--AAEIAYYSYIY 120 (433)
T ss_pred HHHHHHHHhhhhhcceeeeeeccchhHHHHHHHh-----c----------CCchheeeehhhcChHH--HHHHhhhheee
Confidence 3334445678887788776655444444444444 1 11221111112222111 11223467777
Q ss_pred ccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q psy11545 231 EVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 231 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
+..+++++-++.|.+-...-.|-..+..+...+...
T Consensus 121 s~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 121 SKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred eecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 788899888899998888877777777776666554
No 291
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=72.83 E-value=5.3 Score=27.77 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHhhHH-----HHHHH-HHhcccCCChH
Q psy11545 14 DTVAAISTII-----PVLSI-IAGCLMPESPS 39 (337)
Q Consensus 14 r~~f~~~~~~-----~~~~~-~~~~~~pesp~ 39 (337)
|.++++..++ ++++. ++++++|+.|.
T Consensus 37 Rl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~ 68 (118)
T PRK10697 37 RIIVVLSIFFGLFVFTLVAYIILSFALDPMPD 68 (118)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhccCCcc
Confidence 6665544433 23333 34455887774
No 292
>COG1288 Predicted membrane protein [Function unknown]
Probab=68.78 E-value=83 Score=27.77 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=20.7
Q ss_pred hHHHHHHHhhHHHHHHHHHhc--ccCCChH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGC--LMPESPS 39 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~--~~pesp~ 39 (337)
+||.+.++......+..+.++ .+++.|.
T Consensus 217 ~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~ 246 (481)
T COG1288 217 GLRIVVWVVFTLISIIYVYWYASKVKKDPT 246 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 899999998887777666665 2666663
No 293
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=66.28 E-value=25 Score=28.44 Aligned_cols=29 Identities=17% Similarity=0.014 Sum_probs=14.9
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy11545 236 KVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 268 (337)
Q Consensus 236 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 268 (337)
-.|..+.|+..........+. ||...++|
T Consensus 75 ii~~iGLglg~liW~s~n~l~----Gw~~grfG 103 (254)
T PF07857_consen 75 IIKTIGLGLGMLIWGSVNCLT----GWASGRFG 103 (254)
T ss_pred HhhhhhhHHHHHHHHHHHHHH----HHHHhhce
Confidence 345555566555555555444 44444444
No 294
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=65.67 E-value=65 Score=27.95 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q psy11545 145 GIVRLIFTIASCIMMKKMG 163 (337)
Q Consensus 145 ~~~~~~~~~~~g~l~d~~g 163 (337)
.+..++..+..|++..|+|
T Consensus 5 ~i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 5 AILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4445555666677766653
No 295
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=63.59 E-value=1.2e+02 Score=29.08 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKM 162 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~ 162 (337)
.....+..+.++++.++.-.+.|+.
T Consensus 160 ~~~sl~l~i~~l~~p~~~q~viD~V 184 (709)
T COG2274 160 LLASLLLQLLALATPLFSQIVIDKV 184 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556677777888888888886
No 296
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=61.13 E-value=19 Score=24.58 Aligned_cols=28 Identities=7% Similarity=-0.011 Sum_probs=20.7
Q ss_pred hhHHHHHHHhhHHHHHHHHH-hcccCCCh
Q psy11545 11 LSWDTVAAISTIIPVLSIIA-GCLMPESP 38 (337)
Q Consensus 11 ~~Wr~~f~~~~~~~~~~~~~-~~~~pesp 38 (337)
.+|+.+|++...++++.+.+ ..+.||+.
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 38999999987777665544 44689875
No 297
>COG3462 Predicted membrane protein [Function unknown]
Probab=58.24 E-value=30 Score=23.43 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=12.5
Q ss_pred hhhhhHHHHHHHhhHHHHHHHHHh
Q psy11545 8 GAFLSWDTVAAISTIIPVLSIIAG 31 (337)
Q Consensus 8 ~~~~~Wr~~f~~~~~~~~~~~~~~ 31 (337)
|.+.||-.+.-+.+++.+++++..
T Consensus 44 GG~yGm~lImpI~~~vvli~lvvf 67 (117)
T COG3462 44 GGLYGMWLIMPIFWAVVLIFLVVF 67 (117)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Confidence 334466655555555555544443
No 298
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=57.98 E-value=20 Score=17.73 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=3.7
Q ss_pred HHhcccCCChH
Q psy11545 29 IAGCLMPESPS 39 (337)
Q Consensus 29 ~~~~~~pesp~ 39 (337)
....+.+|+||
T Consensus 18 ffAI~FRePPr 28 (29)
T PF01405_consen 18 FFAIFFREPPR 28 (29)
T ss_dssp HHHHHSS----
T ss_pred HhhhhccCCCC
Confidence 33445788885
No 299
>PRK10263 DNA translocase FtsK; Provisional
Probab=57.87 E-value=39 Score=34.30 Aligned_cols=20 Identities=5% Similarity=-0.086 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q psy11545 144 MGIVRLIFTIASCIMMKKMG 163 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~g 163 (337)
...++.+|..++..+..-+|
T Consensus 61 ~Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred ccccchHHHHHHHHHHHHHh
Confidence 34455555555555555555
No 300
>KOG2601|consensus
Probab=57.28 E-value=1.3e+02 Score=26.25 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHH
Q psy11545 243 GLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGT 284 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 284 (337)
+..-..-.....+.|.+.|.+....+.+..-..+++-.++..
T Consensus 178 atir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm 219 (503)
T KOG2601|consen 178 ATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSM 219 (503)
T ss_pred hhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHH
Confidence 333344455677888888888887777765555655555543
No 301
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=56.68 E-value=1e+02 Score=24.59 Aligned_cols=21 Identities=5% Similarity=-0.178 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhcCChhhH
Q psy11545 148 RLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 148 ~~~~~~~~g~l~d~~grr~~~ 168 (337)
..+.-++.|++.-+++.++..
T Consensus 180 ~~~~L~~~G~~~~~~~~~~~~ 200 (225)
T cd02434 180 VAFTLFLLGSFKSKLYNGKWI 200 (225)
T ss_pred HHHHHHHHHHHHHHhcCCchH
Confidence 344445556665555555443
No 302
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=53.10 E-value=4.2 Score=32.78 Aligned_cols=13 Identities=15% Similarity=0.733 Sum_probs=0.0
Q ss_pred HHHhheeccCCCC
Q psy11545 284 TIFFYVYLPETKN 296 (337)
Q Consensus 284 ~~~~~~~~~e~~~ 296 (337)
+++.|+++.+++.
T Consensus 178 aiLIWlY~H~~~~ 190 (381)
T PF05297_consen 178 AILIWLYVHDQRH 190 (381)
T ss_dssp -------------
T ss_pred HHHHHHHhcCCCC
Confidence 3445677777654
No 303
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=51.79 E-value=1.2e+02 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhcCChhhH
Q psy11545 148 RLIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 148 ~~~~~~~~g~l~d~~grr~~~ 168 (337)
..+.-++.|++.-|+++++..
T Consensus 174 ~~~aL~~~G~~~a~~~~~~~~ 194 (218)
T cd02432 174 TLLALALTGYVSARLGGASVL 194 (218)
T ss_pred HHHHHHHHHHHHHHHCCCCHH
Confidence 344445555555555555443
No 304
>KOG3880|consensus
Probab=51.62 E-value=72 Score=26.96 Aligned_cols=60 Identities=18% Similarity=0.031 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhH
Q psy11545 202 VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYN 261 (337)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 261 (337)
+..+.++.+.++-+..+.+....++--+.+-.+++.|-.+++.......+|..++..+.-
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 455556666666666665544444444455566788999999998888888777765543
No 305
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=51.39 E-value=28 Score=17.41 Aligned_cols=9 Identities=11% Similarity=0.361 Sum_probs=6.1
Q ss_pred hcccCCChH
Q psy11545 31 GCLMPESPS 39 (337)
Q Consensus 31 ~~~~pesp~ 39 (337)
..+.+|+||
T Consensus 20 AIfFRepPr 28 (31)
T PRK11875 20 AIAFRDPPK 28 (31)
T ss_pred hhhccCCCC
Confidence 345688886
No 306
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=50.90 E-value=19 Score=25.24 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=15.2
Q ss_pred HHHHHHHhhHHHH-----H-HHHHhcccCCChH
Q psy11545 13 WDTVAAISTIIPV-----L-SIIAGCLMPESPS 39 (337)
Q Consensus 13 Wr~~f~~~~~~~~-----~-~~~~~~~~pesp~ 39 (337)
.|.+|++..+++. + -+++++++|+.|.
T Consensus 31 VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~ 63 (121)
T TIGR02978 31 VRILVVSALLFGGGFFVLVAYIALWLLLDKKPI 63 (121)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 4777776555432 2 2234455888774
No 307
>KOG2881|consensus
Probab=50.08 E-value=67 Score=26.02 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=17.7
Q ss_pred HHHHhhhcCChhhHHHHhHHHHHHHH
Q psy11545 155 SCIMMKKMGRRSLTFISSIGCGVSMT 180 (337)
Q Consensus 155 ~g~l~d~~grr~~~~~~~~~~~~~~~ 180 (337)
+-+++.|+.-|.+.+++.+++.+..+
T Consensus 260 Gk~lAskIS~rtVt~~ggi~Fi~Fgl 285 (294)
T KOG2881|consen 260 GKYLASKISVRTVTLIGGILFIIFGL 285 (294)
T ss_pred hHHHhhhheeEEEEEecchhHHHHHH
Confidence 34567888888887777766655443
No 308
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=49.79 E-value=1.3e+02 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhcCChhhH
Q psy11545 149 LIFTIASCIMMKKMGRRSLT 168 (337)
Q Consensus 149 ~~~~~~~g~l~d~~grr~~~ 168 (337)
.+..++.|++.-|+++++..
T Consensus 190 ~~~L~~lG~~~a~~s~~~~~ 209 (234)
T cd02433 190 GLALLATGAVTGLLSGRSPG 209 (234)
T ss_pred HHHHHHHHHHHHhhCCCcHH
Confidence 33444455555555554443
No 309
>KOG0055|consensus
Probab=49.77 E-value=3e+02 Score=28.32 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=22.1
Q ss_pred cccccchhhhhHHHHHHHhhHHHHHHHHHhc
Q psy11545 2 LFEYSLGAFLSWDTVAAISTIIPVLSIIAGC 32 (337)
Q Consensus 2 l~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 32 (337)
+.+..++.+.+||...+..+...++.+....
T Consensus 797 ~~~iiiaf~~~W~lalv~la~~Pll~~~~~~ 827 (1228)
T KOG0055|consen 797 IIGIIIAFIYGWRLALVVLATFPLLILSGYL 827 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777999999888877766655443
No 310
>CHL00031 psbT photosystem II protein T
Probab=47.51 E-value=32 Score=17.52 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=6.3
Q ss_pred hcccCCChH
Q psy11545 31 GCLMPESPS 39 (337)
Q Consensus 31 ~~~~pesp~ 39 (337)
..+++|+||
T Consensus 20 AI~FRePPr 28 (33)
T CHL00031 20 AIFFREPPK 28 (33)
T ss_pred hheecCCCC
Confidence 345789986
No 311
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=45.38 E-value=2.4e+02 Score=25.59 Aligned_cols=56 Identities=11% Similarity=-0.034 Sum_probs=38.6
Q ss_pred hhhcccCCc-cchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHH
Q psy11545 227 VMIGEVYPT-KVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLL 282 (337)
Q Consensus 227 ~~~~e~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 282 (337)
..+.|.+|. +.|+.-+|-.....++...+...+.+.+.+..||.....+..++.++
T Consensus 289 ~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 289 SKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456677764 36677777777776776666666668999999998766665555544
No 312
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=45.05 E-value=37 Score=20.47 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=16.1
Q ss_pred hHHHHHHHhhHHH---HHH-HHHhcccCCCh
Q psy11545 12 SWDTVAAISTIIP---VLS-IIAGCLMPESP 38 (337)
Q Consensus 12 ~Wr~~f~~~~~~~---~~~-~~~~~~~pesp 38 (337)
-+|.+|.+..+++ +++ +++++++|+.|
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 3688887776654 222 23444588876
No 313
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=41.07 E-value=14 Score=29.85 Aligned_cols=55 Identities=5% Similarity=0.096 Sum_probs=30.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHHH--HhH-HHHH--hcCCccchHHHHHHHHHHHHHhhee
Q psy11545 236 KVRGIVGGLTTCACHFFIFLTVK--SYN-MFQT--HLTKEGTFLMYGCISLLGTIFFYVY 290 (337)
Q Consensus 236 ~~r~~~~~~~~~~~~~~~~~~~~--~~~-~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (337)
++|+.-+.+......+|+++... +.+ ...+ ...|...+.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666677777766533 333 1111 2347777777776666555544333
No 314
>KOG3097|consensus
Probab=40.44 E-value=2.4e+02 Score=24.26 Aligned_cols=33 Identities=3% Similarity=0.087 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHH
Q psy11545 144 MGIVRLIFTIASCIMMKKMGRRSLTFISSIGCG 176 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 176 (337)
..+.-+.++++.+.+++++|-|+++.++.....
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ 99 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYA 99 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344456667777799999999998876554443
No 315
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=40.18 E-value=30 Score=23.63 Aligned_cols=38 Identities=24% Similarity=0.071 Sum_probs=23.9
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHhheeccCCCCCCH
Q psy11545 262 MFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 299 (337)
Q Consensus 262 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 299 (337)
...+..+|..++++...++++.+.+.+.+.|++.-++.
T Consensus 52 ~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~W 89 (105)
T PF10183_consen 52 EKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTW 89 (105)
T ss_pred CcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34455678777776555555555556677898876543
No 316
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=39.98 E-value=1.8e+02 Score=22.80 Aligned_cols=14 Identities=0% Similarity=0.003 Sum_probs=6.0
Q ss_pred HHHHHHHhhhcCCh
Q psy11545 152 TIASCIMMKKMGRR 165 (337)
Q Consensus 152 ~~~~g~l~d~~grr 165 (337)
-.+.|++..++..+
T Consensus 174 L~~~G~~~a~~~~~ 187 (213)
T PF01988_consen 174 LFILGYFKARISGQ 187 (213)
T ss_pred HHHHHHHHHHHcCC
Confidence 33444444444443
No 317
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=39.45 E-value=1.2e+02 Score=20.52 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHhHHHHH
Q psy11545 149 LIFTIASCIMMKKMGRRSLTFISSIGCGV 177 (337)
Q Consensus 149 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 177 (337)
++|.+++-|+=.+++-++.+.+.+++.++
T Consensus 57 l~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 33444444554467766554444443333
No 318
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=38.83 E-value=1.9e+02 Score=22.60 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=26.1
Q ss_pred cccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCcc-chHHHHHHHHHHH
Q psy11545 230 GEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG-TFLMYGCISLLGT 284 (337)
Q Consensus 230 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 284 (337)
.+-.++++|-+..--......+...+....+..+.+.+|... .|-+.+++.+...
T Consensus 28 t~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~i 83 (203)
T PF01914_consen 28 TKGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLI 83 (203)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 344444444333222222333333344445566677777665 4556665554443
No 319
>PLN02601 beta-carotene hydroxylase
Probab=38.60 E-value=1.9e+02 Score=23.67 Aligned_cols=22 Identities=0% Similarity=-0.162 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q psy11545 141 AVIMGIVRLIFTIASCIMMKKM 162 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~g~l~d~~ 162 (337)
.....++.+++.=+..+++.|+
T Consensus 136 ~~al~lgtfvgMEf~Aw~aHKY 157 (303)
T PLN02601 136 TFALSVGAAVGMEFWARWAHRA 157 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666766677776654
No 320
>PRK02237 hypothetical protein; Provisional
Probab=37.80 E-value=1e+02 Score=21.08 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHH
Q psy11545 137 NNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 182 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 182 (337)
.+-....++-..++.+++.++..|+...-+-=.++..++.++..++
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 3566777788889999999999999877665556666655555443
No 321
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=35.19 E-value=87 Score=21.37 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 182 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 182 (337)
+-....++-..++.+++.++..|+....+-=.++..++.++..++
T Consensus 57 GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 57 GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 566777888889999999999999877666566666665555443
No 322
>PF12832 MFS_1_like: MFS_1 like family
Probab=34.38 E-value=1.2e+02 Score=19.13 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHH
Q psy11545 239 GIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 276 (337)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (337)
..-.|+......+...+++.+.+.+.|..+.+......
T Consensus 34 ~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 34 PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 44567778888888999999999999998877554443
No 323
>COG4769 Predicted membrane protein [Function unknown]
Probab=33.36 E-value=2.1e+02 Score=21.47 Aligned_cols=27 Identities=11% Similarity=0.280 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhhHH
Q psy11545 143 IMGIVRLIFTIASCIMMKKMGRRSLTF 169 (337)
Q Consensus 143 ~~~~~~~~~~~~~g~l~d~~grr~~~~ 169 (337)
+++..+.+.+.+..++..++|.|.+-+
T Consensus 81 l~sfaG~i~S~L~m~~l~~f~~k~~S~ 107 (181)
T COG4769 81 LYSFAGAILSTLFMYFLYQFGPKYLSL 107 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEee
Confidence 344455556666778888999887633
No 324
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.76 E-value=45 Score=26.30 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=33.7
Q ss_pred ccccchhhhhHHHHHHHhhHHHHHHHHHhcc--cCCChHHHHhcCChHHHHHHHHHHhc
Q psy11545 3 FEYSLGAFLSWDTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRA 59 (337)
Q Consensus 3 ~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~l~~~~~ 59 (337)
++.++|...++.|.+++.+++..+++.++.| --|.-.|-...|+.-.+..+++.+++
T Consensus 41 v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 41 VFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 3445555557667777777775554444433 33444455566777677777776654
No 325
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=31.09 E-value=2.1e+02 Score=20.87 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=26.4
Q ss_pred cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHH
Q psy11545 131 AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFI 170 (337)
Q Consensus 131 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 170 (337)
.|++... .....+.++.-+++.+++.++++++++-..+.+
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~ 107 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVI 107 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3555333 445566677777888888888888877665543
No 326
>COG2119 Predicted membrane protein [Function unknown]
Probab=31.06 E-value=2.2e+02 Score=21.85 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHH
Q psy11545 144 MGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 179 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 179 (337)
..+++.++.+.+.++++|+..|.+..++.++..+..
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 456667778888899999999988777666555444
No 327
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=30.95 E-value=4.3e+02 Score=24.35 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q psy11545 142 VIMGIVRLIFTIASCIMMKKMGR 164 (337)
Q Consensus 142 ~~~~~~~~~~~~~~g~l~d~~gr 164 (337)
..+.+.+.+++..++++-..+|.
T Consensus 304 ~~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 304 ILYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCC
Confidence 33445555555555555555554
No 328
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=29.10 E-value=50 Score=23.81 Aligned_cols=24 Identities=13% Similarity=0.404 Sum_probs=17.8
Q ss_pred hcccCCccchhhhhhHHHHHHHHH
Q psy11545 229 IGEVYPTKVRGIVGGLTTCACHFF 252 (337)
Q Consensus 229 ~~e~~p~~~r~~~~~~~~~~~~~~ 252 (337)
+.|++|+..|..+.+..+......
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~ 83 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAV 83 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHH
Confidence 569999999998777766554443
No 329
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=28.94 E-value=68 Score=25.48 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=19.4
Q ss_pred hhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q psy11545 226 WVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 259 (337)
Q Consensus 226 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 259 (337)
..-+.+.+| +...+..++....+-+.+..|.++
T Consensus 193 ~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~ 225 (241)
T PF11299_consen 193 SGALAAAYP-EMADQILAFAAASNLLTSVTGLYM 225 (241)
T ss_pred HHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556776 455666666666665555555443
No 330
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=28.52 E-value=2.6e+02 Score=21.07 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhcCChhhHHHH
Q psy11545 147 VRLIFTIASCIMMKKMGRRSLTFIS 171 (337)
Q Consensus 147 ~~~~~~~~~g~l~d~~grr~~~~~~ 171 (337)
...+.-++.|++.-|++.++....+
T Consensus 125 ~~~~~L~ilG~~~a~~s~~~~~~s~ 149 (169)
T TIGR00267 125 LTLIALLVLGVYLGRISRENILISS 149 (169)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3344445566666666665554333
No 331
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=27.33 E-value=1.3e+02 Score=17.38 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=18.5
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCC
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPE 36 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pe 36 (337)
.|.++|+...+.+++-+++...++.
T Consensus 23 ww~~~f~~tivfa~~Y~~~yp~~~~ 47 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLVLYPGLGN 47 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc
Confidence 6899999988888877766444443
No 332
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=27.05 E-value=3.4e+02 Score=21.94 Aligned_cols=19 Identities=0% Similarity=-0.059 Sum_probs=8.9
Q ss_pred HHHHHHhhHHHHHHHHHhc
Q psy11545 14 DTVAAISTIIPVLSIIAGC 32 (337)
Q Consensus 14 r~~f~~~~~~~~~~~~~~~ 32 (337)
...-++.|+..++...+..
T Consensus 49 ~~~vll~Gla~liAgA~SM 67 (241)
T cd02435 49 TKLVITGGLAELAAGAISM 67 (241)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3344455555555444443
No 333
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=26.37 E-value=3.5e+02 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=10.4
Q ss_pred HHHhhHHHHHHHHHhcccCCC
Q psy11545 17 AAISTIIPVLSIIAGCLMPES 37 (337)
Q Consensus 17 f~~~~~~~~~~~~~~~~~pes 37 (337)
|.+..+..+...++-++.|..
T Consensus 5 ~~il~iiiv~~~ilt~~iPag 25 (465)
T PF03606_consen 5 FVILFIIIVFAAILTWIIPAG 25 (465)
T ss_pred HHHHHHHHHHHHHHHhcCcch
Confidence 334444444455555556643
No 334
>KOG4830|consensus
Probab=25.36 E-value=52 Score=26.90 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=29.7
Q ss_pred cchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHH---------HHhhhcCChhh
Q psy11545 123 YAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASC---------IMMKKMGRRSL 167 (337)
Q Consensus 123 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g---------~l~d~~grr~~ 167 (337)
|.-.++.+.|.++.. .....+..+...+..++.| +-.||+|||+.
T Consensus 39 Ylllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 39 YLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 333455666776544 6666777777777777765 34689999863
No 335
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=25.02 E-value=88 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.3
Q ss_pred hhcccCCccchhhhhhHHHHHHHH
Q psy11545 228 MIGEVYPTKVRGIVGGLTTCACHF 251 (337)
Q Consensus 228 ~~~e~~p~~~r~~~~~~~~~~~~~ 251 (337)
-+.|++|+..|..+.+..+.....
T Consensus 57 ALkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 57 ALKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHH
Confidence 356999999998877666655443
No 336
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=24.61 E-value=1.8e+02 Score=23.70 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=9.2
Q ss_pred HHHHHhhHHHHHHHHHhccc
Q psy11545 15 TVAAISTIIPVLSIIAGCLM 34 (337)
Q Consensus 15 ~~f~~~~~~~~~~~~~~~~~ 34 (337)
++=++..++.++...+..++
T Consensus 116 ~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred HHHHHHHHHHHHHHHheeee
Confidence 33344444444444444444
No 337
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=24.11 E-value=3.4e+02 Score=20.90 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q psy11545 144 MGIVRLIFTIASCIMMKKMGR 164 (337)
Q Consensus 144 ~~~~~~~~~~~~g~l~d~~gr 164 (337)
+-++..++.++.|++.||..+
T Consensus 91 yL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 91 YLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 345667788999999999875
No 338
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=24.07 E-value=4.6e+02 Score=22.47 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC
Q psy11545 141 AVIMGIVRLIFTIASCIMMKKMGR 164 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~g~l~d~~gr 164 (337)
....++...+....--++.++..+
T Consensus 173 ~l~~a~lya~~nV~~E~~v~~~~~ 196 (334)
T PF06027_consen 173 ALLGAILYAVSNVLEEKLVKKAPR 196 (334)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCH
Confidence 334444455555555566655544
No 339
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=23.92 E-value=3.4e+02 Score=20.84 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHH
Q psy11545 141 AVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLG 183 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 183 (337)
.....+..+++.++.-.+..|.+||....+..++.++..++.+
T Consensus 34 ~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 34 LFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 4555667777888888899999999988777776666555444
No 340
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=23.11 E-value=3.6e+02 Score=20.92 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hcCChhhHHHHhHHHHHHHHHHHH
Q psy11545 141 AVIMGIVRLIFTIASCIMMK---KMGRRSLTFISSIGCGVSMTGLGL 184 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~g~l~d---~~grr~~~~~~~~~~~~~~~~~~~ 184 (337)
....-++.++|..+++.+.+ +..+|+.......+..+..+....
T Consensus 52 ~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~~~~ 98 (209)
T PF06912_consen 52 YLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLIAAL 98 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777732 334444455555555444444444
No 341
>KOG4473|consensus
Probab=22.55 E-value=2.4e+02 Score=22.23 Aligned_cols=41 Identities=7% Similarity=-0.049 Sum_probs=27.0
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchH
Q psy11545 234 PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 274 (337)
Q Consensus 234 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (337)
|...|.+-.++.....+.-+.+.|.+...++.....+....
T Consensus 158 p~~~~p~qaA~asa~afslGg~vPLl~~~fi~~~~~~~v~~ 198 (247)
T KOG4473|consen 158 PAENRPLQAAAASALAFSLGGIVPLLPAAFVKDYKVRIVVS 198 (247)
T ss_pred CCCCchHHHHHHHHHHHHhccHHhhhHHHhhhhhhhhhhhH
Confidence 55566666677776666666677777776777666654333
No 342
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.07 E-value=1.1e+02 Score=18.16 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=18.8
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCCh
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESP 38 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp 38 (337)
+.+...++..+.+++..++...+|+.+
T Consensus 30 n~~~~~Ii~vi~~i~~~~~~~~i~~~~ 56 (57)
T PF11151_consen 30 NFTTAAIIAVIFGIIVANIIAVIPKKS 56 (57)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 677777777777777777666666554
No 343
>KOG2881|consensus
Probab=21.99 E-value=4.5e+02 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=9.1
Q ss_pred cCCCC-CCHHHHHHHhcccc
Q psy11545 292 PETKN-KTLQEIEEQFAGKS 310 (337)
Q Consensus 292 ~e~~~-~~~~~~~~~~~~~~ 310 (337)
++.++ ++.+|.+++.+++.
T Consensus 155 ~~~~~~eE~eEVe~el~~~~ 174 (294)
T KOG2881|consen 155 SPSEGQEELEEVEAELAKRE 174 (294)
T ss_pred CCccchhhHHHHHHHHHhcc
Confidence 33443 44555555554443
No 344
>PF15050 SCIMP: SCIMP protein
Probab=21.95 E-value=45 Score=23.07 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=20.2
Q ss_pred HHHHHHHhhHHHHHHH--HHhcccCCChHHHHhcCChHHHHH
Q psy11545 13 WDTVAAISTIIPVLSI--IAGCLMPESPSWLLSQGRKDACRN 52 (337)
Q Consensus 13 Wr~~f~~~~~~~~~~~--~~~~~~pesp~~l~~~~~~~~a~~ 52 (337)
||--|++..+.++++. .+.+.+-=-=||++++|+.-+..+
T Consensus 4 Wr~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiak 45 (133)
T PF15050_consen 4 WRDNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAK 45 (133)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceecc
Confidence 7877777655554322 111112212367777776544433
No 345
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.83 E-value=3.9e+02 Score=20.81 Aligned_cols=11 Identities=0% Similarity=0.277 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q psy11545 149 LIFTIASCIMM 159 (337)
Q Consensus 149 ~~~~~~~g~l~ 159 (337)
+++++..+.+.
T Consensus 181 fLcS~~vs~il 191 (201)
T COG1422 181 FLCSFVVSQIL 191 (201)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 346
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=21.46 E-value=1.3e+02 Score=20.05 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCh
Q psy11545 142 VIMGIVRLIFTIASCIMMKKMGRR 165 (337)
Q Consensus 142 ~~~~~~~~~~~~~~g~l~d~~grr 165 (337)
....+..++.+++.|.+.||..||
T Consensus 82 ~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 82 WITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455566788899999998776
No 347
>KOG4112|consensus
Probab=20.88 E-value=1.6e+02 Score=19.51 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHH
Q psy11545 244 LTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 286 (337)
+....-.+++++ ..+.|+..+.+++. .++.++-+++.+++
T Consensus 27 ~~q~ilti~aiV-g~i~Gf~~Qqls~t--vy~vg~~~v~t~li 66 (101)
T KOG4112|consen 27 FQQLILTIGAIV-GFIYGFAQQQLSVT--VYIVGAGFVFTLLI 66 (101)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 333344444433 35557777766653 33444444444443
No 348
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=20.81 E-value=1.3e+02 Score=18.51 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=5.0
Q ss_pred heeccCCCC
Q psy11545 288 YVYLPETKN 296 (337)
Q Consensus 288 ~~~~~e~~~ 296 (337)
=..+||..+
T Consensus 49 G~~LPe~s~ 57 (67)
T PF11511_consen 49 GLLLPERSR 57 (67)
T ss_dssp HHSSTTTCS
T ss_pred HHhCchhcc
Confidence 345777543
No 349
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.73 E-value=2.5e+02 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=13.3
Q ss_pred hHHHHHHHhhHHHHHHHHHhccc
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLM 34 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~ 34 (337)
+|..+++....+.++++++..|+
T Consensus 17 ~~~t~~~~iInFliL~~lL~~~l 39 (173)
T PRK13453 17 EWGTVIVTVLTFIVLLALLKKFA 39 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665555555555555554
No 350
>KOG2601|consensus
Probab=20.46 E-value=92 Score=27.18 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=25.8
Q ss_pred hhhhcccCCccchhhhhhHHHHHHHHHHHHH
Q psy11545 226 WVMIGEVYPTKVRGIVGGLTTCACHFFIFLT 256 (337)
Q Consensus 226 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 256 (337)
.-...|..|.+.|..+.|+.+..+.....+-
T Consensus 408 tqimQe~VpEseR~vv~gvqnsL~~~ldll~ 438 (503)
T KOG2601|consen 408 TQIMQETVPESERCVVFGVQNSLNSALDLLK 438 (503)
T ss_pred HHHHHHhcchhhhhhhHhHHHHHHHHHHHHH
Confidence 4567899999999999999999888766554
Done!