Query psy11545
Match_columns 337
No_of_seqs 468 out of 1517
Neff 11.5
Searched_HMMs 29240
Date Fri Aug 16 21:13:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.4E-32 1.9E-36 239.6 28.2 280 12-312 198-484 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 2.8E-20 9.6E-25 162.6 8.4 243 11-289 182-432 (451)
3 3o7q_A L-fucose-proton symport 99.8 1E-16 3.5E-21 139.5 20.3 214 13-285 208-427 (438)
4 2cfq_A Lactose permease; trans 99.7 1.3E-18 4.4E-23 150.5 4.6 144 138-297 262-406 (417)
5 1pw4_A Glycerol-3-phosphate tr 99.7 8.1E-17 2.8E-21 140.7 11.1 166 117-296 44-212 (451)
6 3o7q_A L-fucose-proton symport 99.7 1.6E-15 5.6E-20 131.9 14.9 157 117-286 42-225 (438)
7 2gfp_A EMRD, multidrug resista 99.6 4.1E-16 1.4E-20 132.9 8.7 164 117-296 16-180 (375)
8 4aps_A DI-OR tripeptide H+ sym 99.6 5.5E-15 1.9E-19 130.6 14.9 169 120-296 302-477 (491)
9 4aps_A DI-OR tripeptide H+ sym 99.6 1.3E-14 4.5E-19 128.1 13.8 143 131-289 49-195 (491)
10 2xut_A Proton/peptide symporte 99.6 4.5E-14 1.5E-18 125.7 14.5 154 120-289 31-197 (524)
11 2gfp_A EMRD, multidrug resista 99.5 3.1E-15 1.1E-19 127.5 -0.5 208 10-275 150-361 (375)
12 4gc0_A D-xylose-proton symport 99.4 3E-13 1E-17 119.4 9.9 156 138-294 58-223 (491)
13 2xut_A Proton/peptide symporte 99.3 1.4E-11 4.8E-16 109.6 9.1 78 221-298 422-510 (524)
14 2cfq_A Lactose permease; trans 99.1 3.4E-11 1.2E-15 103.9 1.9 151 119-285 25-182 (417)
15 2g9p_A Antimicrobial peptide l 58.6 5.1 0.00017 17.6 1.3 13 154-166 2-14 (26)
16 3arc_T Photosystem II reaction 55.6 13 0.00043 18.2 2.5 11 29-39 18-28 (32)
17 2b6o_A Aquaporin-0, lens fiber 42.4 25 0.00086 27.6 3.9 22 267-288 198-219 (263)
18 2dw3_A Intrinsic membrane prot 26.7 57 0.002 19.7 2.7 29 268-296 31-59 (77)
19 1j4n_A Aquaporin 1; membrane p 23.9 87 0.003 24.6 4.1 22 267-288 208-229 (271)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.4e-32 Score=239.64 Aligned_cols=280 Identities=26% Similarity=0.533 Sum_probs=209.7
Q ss_pred hHHHHHHHhhHHHHHHHHHhcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q psy11545 12 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 91 (337)
Q Consensus 12 ~Wr~~f~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (337)
+||+.+.+..+++++.++..+++||||||+..+++.+++++.+++...++...++..+.. + ...++++. .....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~--~~~~~ 271 (491)
T 4gc0_A 198 GWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIK-H---SLDHGRKT--GGRLL 271 (491)
T ss_dssp HHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHH--TTHHH
T ss_pred hhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHH-H---HHHhhhhh--hhHHH
Confidence 699999999999999999999999999999999999999999887765432211111111 1 11000100 01111
Q ss_pred HhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHH
Q psy11545 92 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFI 170 (337)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 170 (337)
.+ ..++.........++++.+.+.+.+|.+.+.+..+.+... .....+.++..+++.+++++++||+|||+.++.
T Consensus 272 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 272 MF----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HS----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred Hh----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence 11 1234455666667777888888899999999888776444 666777889999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHH
Q psy11545 171 SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 250 (337)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 250 (337)
+....+++.+.++..... .......++...++..+++.++.++.+.+.+|++|++.|+++.|+.+..++
T Consensus 348 ~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 348 GALGMAIGMFSLGTAFYT-----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp HHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhc-----------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 988888877776654433 233445555556666677778888889999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHH------hcCCccchHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhccccCC
Q psy11545 251 FFIFLTVKSYNMFQT------HLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKK 312 (337)
Q Consensus 251 ~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 312 (337)
+++++++.+++.+.+ ..++...|++++++++++.++.++++||||++++||+++.++++.++
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcc
Confidence 999999988876543 34566688899999999998888999999999999999888765543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.81 E-value=2.8e-20 Score=162.65 Aligned_cols=243 Identities=12% Similarity=0.089 Sum_probs=150.9
Q ss_pred hh-HHHHHHHhhHHHHHHHHHh-cccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHH
Q psy11545 11 LS-WDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 88 (337)
Q Consensus 11 ~~-Wr~~f~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
.| ||+.|++.++++++..++. +++||+|+....+.+.+. ..+.+.+. + ++.+++...++..
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~---~~~~~~~~~~~~~ 244 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDY---N---EKAEQELTAKQIF 244 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------------CCTHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cccccccc---h---hhhhcccccccch
Confidence 36 9999999999887766554 458999864321111100 00000000 0 0000001111122
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhc--CC
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKM--GR 164 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--gr 164 (337)
..+.++++..+...+...+... +......+.|.++++ .|++... +.......++.+++.++.++++||+ ||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 319 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYL-----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 319 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHcCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555544332222222211 244566777888777 5787554 7788888999999999999999999 99
Q ss_pred hhhHHHHhHHHH-HHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhh
Q psy11545 165 RSLTFISSIGCG-VSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 243 (337)
Q Consensus 165 r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 243 (337)
|+.+..+..+.. ++.+++.+ . . ..+.+.......+.+. ...+..+....++.|.+|++.|+++.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~---~--~--------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 320 RGATGVFFMTLVTIATIVYWM---N--P--------AGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS---C--C--------TTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH---h--c--------ccCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 998877766655 44333322 1 0 0122333333333333 233334455688999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhhe
Q psy11545 244 LTTCACHF-FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 244 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 289 (337)
+.+....+ |..++|.+.+.+.+..|+...|++.+++.+++.++.++
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999988888888887777665443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.75 E-value=1e-16 Score=139.54 Aligned_cols=214 Identities=7% Similarity=-0.102 Sum_probs=142.0
Q ss_pred HHHHHHHhhHHHHHHHHHhcc--cCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHHHH
Q psy11545 13 WDTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETL 90 (337)
Q Consensus 13 Wr~~f~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
||+.|++.+++.++..+..++ .||+++. +++ + +++.....++.
T Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~-~-------------------------------~~~~~~~~~~~ 252 (438)
T 3o7q_A 208 VQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-D-------------------------------AKQGSFSASLS 252 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC-C-------------------------------SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc-c-------------------------------ccccchhhhHH
Confidence 999998888777665544433 6776531 000 0 00112234555
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhcCccchhccchHH-Hhhc-CCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q psy11545 91 AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI-FKDA-GAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSL 167 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 167 (337)
+.++++..+...+...+.... ......+.|.+ +++. |.+... +.......++.+++.++.++++||+|||+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 327 (438)
T 3o7q_A 253 RLARIRHWRWAVLAQFCYVGA-----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_dssp HHTTCSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 677777655433332222221 33455666777 7665 877544 777888889999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHH
Q psy11545 168 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 247 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 247 (337)
+..+.++.+++.+++.+ .......+...+.+.+.+ ...+..+.+..|.+|++ |+.+.++..
T Consensus 328 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 328 LAAYALIAMALCLISAF----------------AGGHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHHHHHHHHHH----------------CCHHHHHHHHHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH----------------cCCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 99888877777665555 122223333333333333 34566688888999977 888888877
Q ss_pred HHHHHHHHHHHHhHHHHHhcC-CccchHHHHHHHHHHHH
Q psy11545 248 ACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTI 285 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 285 (337)
...+++.++|.+.+.+.+..| ++..|++.+++.++..+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 677999999999999999998 88888876655554443
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.73 E-value=1.3e-18 Score=150.53 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
+....+..++..++.++.++++||+|||+++..+..+.++..+.+.+ ..+.+..++...+.....
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~ 326 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---------------ATSALEVVILKTLHMFEV 326 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---------------CCSHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---------------hccHHHHHHHHHHHHHHH
Confidence 45556667788889999999999999999988777766665444332 112222222222222222
Q ss_pred hccccchhhhhhcccCCccchhhhhhHH-HHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 218 TIGYLVVPWVMIGEVYPTKVRGIVGGLT-TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 218 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
. ...+..+.+++|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.+++++++.++.++..||+++
T Consensus 327 ~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 327 P-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp H-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred H-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 2 22233468999999999999999994 788889999999999999998888778888888888877766666676554
Q ss_pred C
Q psy11545 297 K 297 (337)
Q Consensus 297 ~ 297 (337)
.
T Consensus 406 ~ 406 (417)
T 2cfq_A 406 L 406 (417)
T ss_dssp T
T ss_pred h
Confidence 3
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.69 E-value=8.1e-17 Score=140.68 Aligned_cols=166 Identities=10% Similarity=0.002 Sum_probs=129.1
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHH-HhcCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIF-ATKDFWP 194 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 194 (337)
........|.+.++. .+... ++......++..++.++.|+++||+|||+++.++.++.+++.+++.+... .
T Consensus 44 ~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------ 116 (451)
T 1pw4_A 44 RKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT------ 116 (451)
T ss_dssp HTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH------
T ss_pred HHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc------
Confidence 455666678777777 76444 88889999999999999999999999999999999988888877665211 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcC-Cccch
Q psy11545 195 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTF 273 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 273 (337)
.+.+..++...+.+.+.+ ...+...+++.|.+|+++|+.++++.+....+|..+++.+.+.+.+..| |++.|
T Consensus 117 ------~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f 189 (451)
T 1pw4_A 117 ------SSIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 189 (451)
T ss_dssp ------SSSSHHHHHHHHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred ------ccHHHHHHHHHHHHHHhh-hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 122233333333333333 3456667999999999999999999999999999999999999889898 99999
Q ss_pred HHHHHHHHHHHHHhheeccCCCC
Q psy11545 274 LMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
++.++++++..++.++++||++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 190 YMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHhhccCCHh
Confidence 99998888777666666777543
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.66 E-value=1.6e-15 Score=131.90 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=120.4
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+.++.+++.+++......
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------- 114 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------- 114 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 445666778888888988666 888999999999999999999999999999999999998888877332111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHH-HhcC------
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ-THLT------ 268 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------ 268 (337)
.+.+..++...+.+.+.+ ...+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 115 -----~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 -----MNYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp -----TCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred -----ccHHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 233333333333333333 445566899999999999999999999999999999999999988 5444
Q ss_pred -------------------CccchHHHHHHHHHHHHH
Q psy11545 269 -------------------KEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 269 -------------------~~~~~~~~~~~~~~~~~~ 286 (337)
|++.|++.+++.++..++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 788887777666555544
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.64 E-value=4.1e-16 Score=132.92 Aligned_cols=164 Identities=10% Similarity=-0.006 Sum_probs=128.9
Q ss_pred ccchhccchHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCC
Q psy11545 117 VNPVTFYAVNIFKDAGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+..+.+++.+...+
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 84 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT----------- 84 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----------
Confidence 444555667777888887655 88889999999999999999999999999999999988888877766
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 196 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
.++...+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+.+
T Consensus 85 -----~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 85 -----TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 122233333333333333334566678999999999999999999999999999999999999888899999998
Q ss_pred HHHHHHHHHHHhheeccCCCC
Q psy11545 276 YGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~e~~~ 296 (337)
.+++.++..+...+..||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHCcccCC
Confidence 888887777655666777653
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.62 E-value=5.5e-15 Score=130.58 Aligned_cols=169 Identities=7% Similarity=-0.024 Sum_probs=107.3
Q ss_pred hhccchHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHH-----HHhHHHHHHHHHHHHHHHHhcCC
Q psy11545 120 VTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF-----ISSIGCGVSMTGLGLYIFATKDF 192 (337)
Q Consensus 120 ~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 192 (337)
...+.+.+..+ .+.+ ...+.......++..++.++.++++||+|||+... .+..+.+++.+++..........
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
T 4aps_A 302 GSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS 381 (491)
T ss_dssp GGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC
T ss_pred ccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445555554 3444 33466677778888889999999999999987654 55555555555544422210100
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccc
Q psy11545 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGT 272 (337)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 272 (337)
...+.+.......+.+.+.+ ...+..+.++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+ .++...
T Consensus 382 ------~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~ 453 (491)
T 4aps_A 382 ------GKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAY 453 (491)
T ss_dssp ------TTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHH
T ss_pred ------CCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHH
Confidence 01123333333333333333 3356668899999999999999999999999999999999887765 466667
Q ss_pred hHHHHHHHHHHHHHhheeccCCCC
Q psy11545 273 FLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
+.+++++++++.++.+++.++.++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 454 FSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777766666665543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.59 E-value=1.3e-14 Score=128.12 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=112.1
Q ss_pred cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhh-cCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHH
Q psy11545 131 AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 208 (337)
Q Consensus 131 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
.|.+... ++......++..++.+++|+++|| +|||+++..+.++.+++.+++.+ ..+.+..++
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 113 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---------------PFGASALFG 113 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---------------CCSTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---------------hhhHHHHHH
Confidence 6877555 888899999999999999999999 89999999999888888877665 123333333
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCccc--hhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCccchHHHHHHHHHHHHH
Q psy11545 209 MLMTFTAASTIGYLVVPWVMIGEVYPTKV--RGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 286 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 286 (337)
...+.+.+.+ ...+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..||++.|++.++..+++.+.
T Consensus 114 ~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 114 SIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333 345666899999999988 7788888899999999999999999999999999998887776666555
Q ss_pred hhe
Q psy11545 287 FYV 289 (337)
Q Consensus 287 ~~~ 289 (337)
.++
T Consensus 193 ~~~ 195 (491)
T 4aps_A 193 YYF 195 (491)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.56 E-value=4.5e-14 Score=125.74 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=115.6
Q ss_pred hhccchHHH-hhcC------CCchh-HHHHHHHHHHHHHHHHHHHHHhhhc-CChhhHHHHhHHHHHHHHHHHHHHHHhc
Q psy11545 120 VTFYAVNIF-KDAG------AHVNN-NLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATK 190 (337)
Q Consensus 120 ~~~~~~~~~-~~~g------~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (337)
...+.+.++ ++.| .+... ++......++..++.+++|+++||+ |||+++.++.++.+++.+++.+
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~------ 104 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI------ 104 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH------
Confidence 344444444 4567 77554 8888889999999999999999999 9999999998888888777666
Q ss_pred CCCCCCCCCcc-hhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhH---HHHHHHHHHHHHHHHhHHHHHh
Q psy11545 191 DFWPEYKFPAF-VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL---TTCACHFFIFLTVKSYNMFQTH 266 (337)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
.. +.+..++...+. +.......+...+++.|.+|++.|+.+.+. .+....+|..++|.+.+.+.+.
T Consensus 105 ---------~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 105 ---------FEHSVQGFYTGLFLI-ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp ---------TSSCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred ---------hcccHHHHHHHHHHH-HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12 233333333333 333334456668999999999999876666 8888999999999999999998
Q ss_pred cCCccchHHHHHHHHHHHHHhhe
Q psy11545 267 LTKEGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~~ 289 (337)
.||++.|++.+++.+++.++.++
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777766555433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.47 E-value=3.1e-15 Score=127.47 Aligned_cols=208 Identities=10% Similarity=0.018 Sum_probs=122.5
Q ss_pred hhhHHHHHHHhhHHHHHHHHH-hcccCCChHHHHhcCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhcHHH
Q psy11545 10 FLSWDTVAAISTIIPVLSIIA-GCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 88 (337)
Q Consensus 10 ~~~Wr~~f~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
..|||+.|++.+++.++..+. .+++||+|+.. ++. ++...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------------------------------~~~~~~ 191 (375)
T 2gfp_A 150 MWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---APR-----------------------------------TRLLTS 191 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CCC-----------------------------------CCTTTC
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---ccc-----------------------------------ccHHHH
Confidence 348999999999988887764 44589987421 000 000011
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCccchhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChh
Q psy11545 89 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRS 166 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 166 (337)
+.+.+++|+.+...+....... +......+.|.++++ .|.+... +.......++.+++.++.+++.||++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~- 265 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLA-----GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL- 265 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-
T ss_pred HHHHhcCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2234444443332222222221 133445566666655 5665443 6777778888899999999999998873
Q ss_pred hHHHHhHH-HHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhhHH
Q psy11545 167 LTFISSIG-CGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 245 (337)
Q Consensus 167 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 245 (337)
+..+... ...+...+...... ..+.+.......+.+.+.+. ..+....+..|..| ++|+++.|+.
T Consensus 266 -~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~ 331 (375)
T 2gfp_A 266 -MWQSVICCLLAGLLMWIPDWFG-----------VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALV 331 (375)
T ss_dssp -HHHHHHHHHHTSSSSSHHHHHH-----------HHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhhc-----------cccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHH
Confidence 2222222 22222111111100 01222233333333433333 34566788999998 8899999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCccchHH
Q psy11545 246 TCACHFFIFLTVKSYNMFQTHLTKEGTFLM 275 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (337)
+....+|..+++.+.+.+.+..++...+..
T Consensus 332 ~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 332 GGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999999999887666654444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.44 E-value=3e-13 Score=119.40 Aligned_cols=156 Identities=14% Similarity=0.031 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHHHHHHHHhcCCCC--CCCCCcchhHHHHHHHHHHHH
Q psy11545 138 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP--EYKFPAFVSYLPVLMLMTFTA 215 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 215 (337)
++..+...++.++|++++|+++||+|||+.+.++.++..++.++.++.......... ........+...+++..+..+
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 455666788999999999999999999999999999999888877641100000000 000000234444444444444
Q ss_pred HHhccccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc--------CCccchHHHHHHHHHHHHHh
Q psy11545 216 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL--------TKEGTFLMYGCISLLGTIFF 287 (337)
Q Consensus 216 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~ 287 (337)
....+..+...++++|..|++.|+...++.+....+|..+++.+........ +|+..+.+..+..++. ++.
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 216 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LML 216 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhh
Confidence 4444456677899999999999999999999888888888777766555432 2333344444443433 334
Q ss_pred heeccCC
Q psy11545 288 YVYLPET 294 (337)
Q Consensus 288 ~~~~~e~ 294 (337)
.++.||+
T Consensus 217 ~~~~peS 223 (491)
T 4gc0_A 217 LYTVPES 223 (491)
T ss_dssp GGGSCCC
T ss_pred hhcCCCC
Confidence 5668887
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.25 E-value=1.4e-11 Score=109.61 Aligned_cols=78 Identities=9% Similarity=0.099 Sum_probs=53.0
Q ss_pred ccchhhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhHHHHHhc----------CC-ccchHHHHHHHHHHHHHhhe
Q psy11545 221 YLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL----------TK-EGTFLMYGCISLLGTIFFYV 289 (337)
Q Consensus 221 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~-~~~~~~~~~~~~~~~~~~~~ 289 (337)
..+..+.++.|..|++.||+++|+.++..++|+.+++.+.+.+.+.. +. ...|++.+++++++.++.++
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999877632 11 22266677777777766666
Q ss_pred eccCCCCCC
Q psy11545 290 YLPETKNKT 298 (337)
Q Consensus 290 ~~~e~~~~~ 298 (337)
+.++.++++
T Consensus 502 ~~~~~~~~~ 510 (524)
T 2xut_A 502 YARSYQMQD 510 (524)
T ss_dssp ---------
T ss_pred HHHHhccch
Confidence 666655443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.05 E-value=3.4e-11 Score=103.93 Aligned_cols=151 Identities=9% Similarity=-0.009 Sum_probs=88.5
Q ss_pred chhccchHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHhHHHHHHHHHH---HHHHHHhcCCC
Q psy11545 119 PVTFYAVNIFKD-AGAHVNN-NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL---GLYIFATKDFW 193 (337)
Q Consensus 119 ~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 193 (337)
....+.|.++++ .|++... +.......++..++.++.|+++||+|||+++.++..+.++....+ .+....
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~----- 99 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL----- 99 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH-----
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344566666654 6887555 888899999999999999999999999999988776654422111 110000
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhccccchhhhhhcccCCc--cchhhhhhHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Q psy11545 194 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT--KVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (337)
... ............+... +.......+..++ +.|+.+.+.......+|..++|.+.+.+.+ .+|+.
T Consensus 100 -------~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~ 168 (417)
T 2cfq_A 100 -------QYN--ILVGSIVGGIYLGFCF-NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQF 168 (417)
T ss_dssp -------HTT--CCHHHHGGGSSTTHHH-HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHH
T ss_pred -------HHH--HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhH
Confidence 000 0000000000001000 1111222222222 345767777777778888999999998887 47888
Q ss_pred chHHHHHHHHHHHH
Q psy11545 272 TFLMYGCISLLGTI 285 (337)
Q Consensus 272 ~~~~~~~~~~~~~~ 285 (337)
.|++.++..++..+
T Consensus 169 ~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 169 VFWLGSGCALILAV 182 (417)
T ss_dssp HHTTTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77766655444433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=58.60 E-value=5.1 Score=17.57 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=10.4
Q ss_pred HHHHHhhhcCChh
Q psy11545 154 ASCIMMKKMGRRS 166 (337)
Q Consensus 154 ~~g~l~d~~grr~ 166 (337)
+.|.++.++|||-
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 4578889999984
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=55.59 E-value=13 Score=18.20 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=7.1
Q ss_pred HHhcccCCChH
Q psy11545 29 IAGCLMPESPS 39 (337)
Q Consensus 29 ~~~~~~pesp~ 39 (337)
....+++|+||
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33345789986
No 17
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=42.42 E-value=25 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=10.6
Q ss_pred cCCccchHHHHHHHHHHHHHhh
Q psy11545 267 LTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
+.+.|.+++.-.+..+...+.+
T Consensus 198 ~~~~Wvy~vgP~~Ga~la~~~y 219 (263)
T 2b6o_A 198 FTNHWVYWVGPVIGAGLGSLLY 219 (263)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHH
Confidence 3455566655544444333333
No 18
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=26.73 E-value=57 Score=19.70 Aligned_cols=29 Identities=14% Similarity=-0.052 Sum_probs=12.3
Q ss_pred CCccchHHHHHHHHHHHHHhheeccCCCC
Q psy11545 268 TKEGTFLMYGCISLLGTIFFYVYLPETKN 296 (337)
Q Consensus 268 g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 296 (337)
||...+++...+.+++.-++=.++||..+
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 33333333333333333333355787544
No 19
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=23.91 E-value=87 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=9.7
Q ss_pred cCCccchHHHHHHHHHHHHHhh
Q psy11545 267 LTKEGTFLMYGCISLLGTIFFY 288 (337)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~ 288 (337)
+.+.|.+++.-.+..+...+.+
T Consensus 208 ~~~~wv~~vgP~~Ga~la~~~y 229 (271)
T 1j4n_A 208 FQDHWIFWVGPFIGAALAVLIY 229 (271)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHH
T ss_pred CcceeHHHHHHHHHHHHHHHHH
Confidence 3445556554444433333333
Done!