RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11545
(337 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 136 bits (345), Expect = 2e-36
Identities = 74/295 (25%), Positives = 140/295 (47%), Gaps = 9/295 (3%)
Query: 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 70
L W + I L + +PESP WL+ +GR + R SL RLR + +KE+
Sbjct: 193 LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GEDKELLD 251
Query: 71 LYEFSKRQETQKSRNFKETLAAI--VEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIF 128
E + + + R+ + + ++ + + ++ QF+G+N + +Y+ IF
Sbjct: 252 ELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF 311
Query: 129 KDAGAHVNNN-LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIF 187
++AG ++ L ++I+G V FT + ++ + GRR L I + G + + LG+
Sbjct: 312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA 371
Query: 188 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 247
+ + ++ ++ F A +G+ VPWV++ E++P +R +
Sbjct: 372 SF-----VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426
Query: 248 ACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEI 302
A F+ + + G F+ +G +++LG IF Y +LPETK +TL+EI
Sbjct: 427 ANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 126 bits (318), Expect = 8e-33
Identities = 70/294 (23%), Positives = 139/294 (47%), Gaps = 13/294 (4%)
Query: 13 WDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLY 72
W + + +L +I +PESP WL+ +G+ + R L +LR DV++E+Q
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLR-GVSDVDQEIQEEK 227
Query: 73 EFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG 132
+ +R + ++ E + ++ ++ + Q +G+N + +Y+ IF+ G
Sbjct: 228 DSLERSVEAEKASWLELFRGKTVR---QRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG 284
Query: 133 AHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDF 192
++ L +I+G+V +FT + ++ + GRR L + + G + LG+ +
Sbjct: 285 L-SDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK- 342
Query: 193 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFF 252
+ ++ ++ F A +G+ VPWV++ E++P VR + T A
Sbjct: 343 ------SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLA 396
Query: 253 IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQF 306
FL + T FL++ + +L +F + ++PETK +TL+EI+E F
Sbjct: 397 NFLIGFLF-PIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 120 bits (304), Expect = 1e-30
Identities = 73/301 (24%), Positives = 139/301 (46%), Gaps = 29/301 (9%)
Query: 20 STIIP-VLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQ 78
S IP +L ++ +PE+P +L+S+G+++ LR++ N + +Q +
Sbjct: 199 SEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIKHSLDHG 257
Query: 79 ETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNN 138
+ + IV I ++ + QF G+N V +YA IFK GA +
Sbjct: 258 RKTGGKLLMFGVGVIV---------IGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA 308
Query: 139 L-AAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197
L +I+G++ L FT+ + + + K GR+ L I ++G + M LG +
Sbjct: 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--------- 359
Query: 198 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 257
+ +L ++ + AA + + V WV++ E++P +RG + A +
Sbjct: 360 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVS 417
Query: 258 KSYNMFQTHLTKEGTF------LMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSK 311
++ M + F +YGC+ +L +F + ++PETK KTL+E+E + ++K
Sbjct: 418 WTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK 477
Query: 312 K 312
K
Sbjct: 478 K 478
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 60.8 bits (148), Expect = 3e-10
Identities = 74/313 (23%), Positives = 123/313 (39%), Gaps = 49/313 (15%)
Query: 5 YSLGAFL---------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLR 55
+SLG L W + ++ L + +PESP WL+SQGR + L+
Sbjct: 225 FSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQ 284
Query: 56 RLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFS 115
R+ N +K + S ++ S+ L P K + LM+ + FS
Sbjct: 285 RIAKING--KKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS 342
Query: 116 GVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGC 175
+Y + + N L I G+V L + + +++ ++GRR S +
Sbjct: 343 ------YYGLVLDL-GNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLA 395
Query: 176 GVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT 235
GV+ L L +F D + L VL T+A + YL E+YPT
Sbjct: 396 GVA---LLLLLFVPVD------LYFLRTALAVLGKFGITSAFQMVYLYTA-----ELYPT 441
Query: 236 KVRGIVGGLTTCACH-------FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 288
VR + G+ + F ++L K + +++G ++LL I
Sbjct: 442 VVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFL---------PLVLFGGLALLAGI-LT 491
Query: 289 VYLPETKNKTLQE 301
++LPETK L E
Sbjct: 492 LFLPETKGVPLPE 504
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 53.5 bits (129), Expect = 6e-08
Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 18/203 (8%)
Query: 90 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG--AHVNNNLAAVIMGIV 147
L A++ L+ ++L L F + F G + Y ++ + L + G+
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSF-GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG 223
Query: 148 RLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPV 207
++ + ++ ++GRR L + IG ++ GL L A S +
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLL--IGLLLAALGLLLLALAP-------------SLALL 268
Query: 208 LMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL 267
L+ + + E+ P + RG GL L +
Sbjct: 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
Query: 268 TKEGTFLMYGCISLLGTIFFYVY 290
G FL+ ++LL + +
Sbjct: 329 GYGGVFLILAALALLAALLLLLL 351
Score = 32.7 bits (75), Expect = 0.23
Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 18/192 (9%)
Query: 102 FVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKK 161
++L L F + + + L + + ++ + + +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 162 MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIG- 220
GRR + + + + L AF S L +L++ F G
Sbjct: 61 FGRRRVLLLGLLLFALGSLLL-----------------AFASSLWLLLVGRFLLGLGGGA 103
Query: 221 YLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCIS 280
+I E +P K RG GL + L + L FL+ +
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163
Query: 281 LLGTIFFYVYLP 292
LL + L
Sbjct: 164 LLLALLLLFLLR 175
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 39.1 bits (92), Expect = 0.003
Identities = 23/160 (14%), Positives = 58/160 (36%), Gaps = 29/160 (18%)
Query: 79 ETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGV---NPVTFYAVNIFKDAGAHV 135
E ++ + ++ A+ + +P +IL+L +L+ + + +Y + +AG
Sbjct: 204 EQKEKVSLRDMFKALFK---NRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGLFS 260
Query: 136 NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 195
L I I+ + K+ G++ + + + + + L+ W
Sbjct: 261 VLLLIGTIAAILGAPLWPW---LAKRFGKKRTFLLGMLLAAIGL--VLLFFLPPGSLW-- 313
Query: 196 YKFPAFVSYLPVLMLMTFTAASTIGY---LVVPWVMIGEV 232
+ + + IG ++PW M+ +V
Sbjct: 314 -------------LFLVLVVLAGIGLGLATLLPWAMLADV 340
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 36.5 bits (85), Expect = 0.018
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 34/161 (21%)
Query: 100 KPFVILMLYFLIYQFSGVN----PVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 155
+P ++L+L L+ F N + +Y + D L A G LI I
Sbjct: 236 RPLLLLLLMNLLL-FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLA--SGAGLLIGLILW 292
Query: 156 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 215
++KK G++ L I GL L + F V++++
Sbjct: 293 PRLVKKFGKKKLFLI----------GLLLLAVGYLLLY-------FTPAGSVVLIVVALI 335
Query: 216 ASTIGYLVV---PWVMIGEV-----YPTKVR--GIVGGLTT 246
+ +G + PW M+ + + T VR GIV T
Sbjct: 336 IAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT 376
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 35.5 bits (82), Expect = 0.038
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 223 VVPWVMIGEVYPTKVRGIVGGLTTCACHF------FIFLTVKSYN----MFQTHLTKEGT 272
+VP GEV+PT+ R G++ + F FL + + + T +
Sbjct: 415 IVP----GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470
Query: 273 FLMYGCISLLGTIFFYVYLPETKNKTLQEI 302
++ LG I F + +PETK K+L+E+
Sbjct: 471 LEIFALFMFLG-ILFTLLIPETKGKSLEEL 499
>gnl|CDD|226054 COG3523, IcmF, Type VI protein secretion system component VasK
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1188
Score = 34.3 bits (79), Expect = 0.089
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 199 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK---VRGIVGGLTTCACHFFIFL 255
P + L + L+ A + P + +G+V+P + R + GL ++
Sbjct: 6 PLLLVALWIWSLLGVLALCVAVWFAGPLLEVGDVWPLESLAARLLAIGLIVLVW--LLYS 63
Query: 256 TVKSYNM 262
T++ +
Sbjct: 64 TIRLWRA 70
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 32.6 bits (74), Expect = 0.32
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 3 FEYSLGA---FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRA 59
+ + +G+ F SW + V +I A MPESP + L G+ D L+ +
Sbjct: 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHD 379
Query: 60 NN 61
N
Sbjct: 380 TN 381
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 31.8 bits (72), Expect = 0.52
Identities = 38/238 (15%), Positives = 78/238 (32%), Gaps = 36/238 (15%)
Query: 11 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 70
W + IS + + ++ +PE+ W K R + L
Sbjct: 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGG---------- 214
Query: 71 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD 130
E + + AA+V+ A + + L L+ + + + +
Sbjct: 215 --------EHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLK 266
Query: 131 AGAHVNNNLAAVIMGIVRLIFTIASCI---MMKKMGRRSLTFISSIGCGVSMTGLGLYIF 187
A ++ + A I+ + + C+ + +GRR + C + L +
Sbjct: 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----KAYVCSLLAGQLLII-- 319
Query: 188 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 245
P + A V+ L + + I + ++P +GE +PT R G T
Sbjct: 320 ------PVFAIGANVAVLGLGLFFQQMLVQGI-WGILP-KHLGEYFPTDQRAAGLGFT 369
>gnl|CDD|201317 pfam00576, Transthyretin, HIUase/Transthyretin family. This family
includes transthyretin that is a thyroid hormone-binding
protein that transports thyroxine from the bloodstream
to the brain. However, most of the sequences listed in
this family do not bind thyroid hormones. They are
actually enzymes of the purine catabolism that catalyze
the conversion of 5-hydroxyisourate (HIU) to OHCU. HIU
hydrolysis is the original function of the family and is
conserved from bacteria to mammals; transthyretins arose
by gene duplications in the vertebrate lineage. HIUases
are distinguished in the alignment from the conserved
C-terminal YRGS sequence.
Length = 111
Score = 29.9 bits (68), Expect = 0.59
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 183 GLY--IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVP 225
G Y F T D++ P F+ Y+PV F A + VP
Sbjct: 58 GTYRLEFDTGDYFKALGVPPFLPYVPV----VFGIADAGEHYHVP 98
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 30.5 bits (69), Expect = 1.2
Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 19/219 (8%)
Query: 105 LMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVN-NNLAAVIMGIVRLIFTIASCIMMKKMG 163
L L + + + +D G L + + + + + G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 164 RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLV 223
RR + I + + + L F S L +L+++ G L
Sbjct: 61 RRRVLLIGLLLFALGLLLL-----------------LFASSLWLLLVLRVLQGLGGGALF 103
Query: 224 VPW-VMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLL 282
+I + +P + RG GL + L + + FL+ ++LL
Sbjct: 104 PAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALL 163
Query: 283 GTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 321
+ + LP ++ + + A ++ ++
Sbjct: 164 AAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRD 202
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase.
Length = 502
Score = 30.3 bits (68), Expect = 1.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 49 ACRNSLRRLRANNYDVEKEVQGLYEFSKRQE-TQKSRNFKETLAAIVE 95
A + + RLRA V +++G E S+RQ ++ +N KE L + E
Sbjct: 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEE 151
>gnl|CDD|145936 pfam03052, Adeno_52K, Adenoviral protein L1 52/55-kDa. The
adenoviral protein L1 52/55-kDa is expressed in both the
early and late stages of infection which suggests that
it could play multiple roles in the viral life cycle.
The L1 52/55 kDa protein interacts with the viral IVa2
protein and is required for DNA packaging. L1 53/55-kDa
is required to mediate stable association between the
viral DNA and empty capsid.
Length = 198
Score = 29.0 bits (65), Expect = 2.4
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 59 ANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFL 110
A + V E+ YE ++ E +F++T V +P + L LY+L
Sbjct: 77 AQAHMVAAELHRAYEQTEVYEV----SFQDTFNNHVRTLLWRPELPLGLYYL 124
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 29.3 bits (66), Expect = 3.4
Identities = 26/165 (15%), Positives = 45/165 (27%), Gaps = 24/165 (14%)
Query: 145 GIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 204
GI + + S + R I I C + G F+T +
Sbjct: 44 GISKFVMGSVS----DRSNPRVFLPIGLILCAIVNLFFG---FST-------SLWVMAAL 89
Query: 205 LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFF--IFLTVKSYNM 262
+ + G V W + RG C+ H L
Sbjct: 90 WALNGIFQGMGWPPCGRTVTKW------FSRSERGTWVSFWNCS-HNVGGGLLPPLVLFG 142
Query: 263 FQTHLTKEGTFLMYGCISLL-GTIFFYVYLPETKNKTLQEIEEQF 306
+ F++ G I+++ I F + ++ L EE
Sbjct: 143 IAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP 187
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing
protein 8. PNPLA8 is a Ca-independent myocardial
phospholipase which maintains mitochondrial integrity.
PNPLA8 is also known as iPLA2-gamma. In humans, it is
predominantly expressed in heart tissue. iPLA2-gamma can
catalyze both phospholipase A1 and A2 reactions (PLA1
and PLA2 respectively). This family includes PNPLA8
(iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus
musculus.
Length = 308
Score = 28.8 bits (65), Expect = 4.0
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 70 GLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLI-----YQFSGVNPVTFYA 124
G Y S R ET + K L +++ A V L L+ ++F NPV
Sbjct: 227 GRYPSSVRLETGGYTSLKTKLLNLIDSATDTERVHTALDDLLPPDVYFRF---NPVMSEC 283
Query: 125 VNI 127
V +
Sbjct: 284 VEL 286
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 28.9 bits (65), Expect = 5.0
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 139 LAAVIMGIVRLIF-TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 197
+ ++++G++ L + I + G + + + + GL L I K PE
Sbjct: 460 ILSLLIGVLHLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWSVPELL 519
Query: 198 FPAFVSYLPVLMLMTFTAASTIGYLVV------PWVMIGEV 232
F A +G LVV V IG+
Sbjct: 520 GMV---------GAMFGAFGILGLLVVGLILVPGLVAIGQG 551
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 28.4 bits (63), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 279 ISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKH 313
I L G F+ ET + L+E+ +FAG ++H
Sbjct: 871 IELGGMAFYARAAKETSDPVLKELFLKFAGMEQEH 905
>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease. This family
describes the L-fucose permease in bacteria.
L-fucose(6-deoxy-L-galactose) is a monosaccharide found
in glycoproteins and cell wall polysaccharides. L-fucose
is used in bacteria through an inducible pathway
mediated by atleast four enzymes: a permease, isomerase,
kinase and an aldolase which are encoded by fucP, fucI,
fucK, fucA respectively. The fuc genes belong to a
regulon comprising of four linked operons: fucO, fucA,
fucPIK and fucR. The positive regulator is encoded by
fucR, whose protein responds to fuculose-1-phosphate,
which acts as an effector [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 408
Score = 28.3 bits (63), Expect = 7.0
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 101 PFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIA--SCIM 158
PF ++ F ++ F+ N +T V F+ A A V F +A + I
Sbjct: 4 PFALITSLFALWGFA--NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIF 61
Query: 159 MKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTF 213
MKK+ S G+ + GL LY FWP + + +L L ++T
Sbjct: 62 MKKL---------SYKAGI-LLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTA 106
>gnl|CDD|223759 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein
[Amino acid transport and metabolism].
Length = 363
Score = 28.2 bits (63), Expect = 7.0
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 158 MMKKMGRRSLTFISSIGCGVSMTGLG-------LYIFATKDFWPEYKFPAFV 202
MMKK+ RRS ++++ L ++ W Y PA +
Sbjct: 1 MMKKLSRRSFLALAALALAALAGAAAAAAEGKTLNVYN----WGGYIDPALL 48
>gnl|CDD|204928 pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein. This
family of proteins is found in bacteria. Proteins in
this family are approximately 50 amino acids in length.
There are two completely conserved residues (L and Y)
that may be functionally important.
Length = 42
Score = 25.2 bits (56), Expect = 8.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 102 FVILMLYFLIYQFSGVNPVTF 122
F+IL+ +Y +SG+ TF
Sbjct: 18 FLILLALIYLYGYSGIGQGTF 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.427
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,322,215
Number of extensions: 1681894
Number of successful extensions: 2449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2414
Number of HSP's successfully gapped: 90
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)