RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11545
(337 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.005
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 35 PES-PSWLLSQG----RKDACRNSLR-RLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 88
PES W Q DA + R EK + L E+++RQ Q +N
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWR------EKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 89 TLAA 92
A
Sbjct: 138 NRIA 141
Score = 34.4 bits (78), Expect = 0.032
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 293 ETKNKTLQEIEEQFAGKSKKHHSEIYVKPSQQIDSFGFLRRYQ 335
E + K LQE++ SK E K + ++ + +R
Sbjct: 92 EEQRKRLQELDA----ASKVMEQEWREKAKKDLEE--WNQRQS 128
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.011
Identities = 46/277 (16%), Positives = 82/277 (29%), Gaps = 95/277 (34%)
Query: 3 FEYSLGAFLSWD---TVAA------ISTIIPVLSII-----AGCLM-----PESPSWLLS 43
FE +L + +AA +T++ +I A + +S S L
Sbjct: 91 FE---NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF- 146
Query: 44 QGRKDACRNSLRRLRA------NNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPA 97
A +L A N D +E++ LY+
Sbjct: 147 ----RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--------------------TYHV 182
Query: 98 CLKPFVILM---LYFLIYQFSGVNPVTFYAVNIFK----DAGAHVNNNLAAV-----IMG 145
+ + L LI V +NI + + + L ++ ++G
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 146 IVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLY---IFATKDFWPEYKFPAFV 202
+++L + + K +G S + G + GL A D W + F +
Sbjct: 243 VIQLAHYVVTA---KLLGFTPGELRSYL-KGATGHSQGLVTAVAIAETDSWESF-FVSVR 297
Query: 203 SYLPVLMLMTFTAASTIGYLVVPWVMIG----EVYPT 235
+ VL F + IG E YP
Sbjct: 298 KAITVL----F------------F--IGVRCYEAYPN 316
Score = 32.3 bits (73), Expect = 0.25
Identities = 46/287 (16%), Positives = 88/287 (30%), Gaps = 108/287 (37%)
Query: 53 SLRRLRANNYDVEKEV---QGLY--------EFSKRQETQKSRNFKETLAAIVEPACLKP 101
S R L ++ +E + + +F+K E AA EP
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-----EGFAADDEPTTP-- 57
Query: 102 FVILMLYFLIY--------QFSGVNPVTFYAVNIFKDAGAHVNN--NLAAVIMGIVR--- 148
L+ FL Y + + V + F++ N+ LAA ++
Sbjct: 58 -AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 149 -----LI--FTIASCIMMKKMGRRSLT-FISSIGCGVSMTGLGLY-IF----ATKDFWPE 195
LI + A + + ++S + ++G G + L IF T D++ E
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEE 172
Query: 196 ----YKFPAFVSYLPVLMLMTFTAASTI-------------------------------- 219
Y+ +Y ++ + +A T+
Sbjct: 173 LRDLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 220 -GYLV---VPWVMIGEV----Y----------PTKVRGIVGGLTTCA 248
YL+ + +IG + Y P ++R + G T +
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Score = 28.9 bits (64), Expect = 3.4
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 112 YQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVR 148
Y+ S A +++ A H + I+ IV
Sbjct: 1636 YKTSKA------AQDVWNRADNHFKDTYGFSILDIVI 1666
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.30
Identities = 48/367 (13%), Positives = 98/367 (26%), Gaps = 133/367 (36%)
Query: 51 RNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIV----EPACLKPF---- 102
R +L LR + + G+ K +A V + C F
Sbjct: 141 RQALLELRPAKNVL---IDGVLGSG-----------KTWVALDVCLSYKVQCKMDFKIFW 186
Query: 103 -----------VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIF 151
V+ ML L+YQ D +++ + ++ + RL
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDP-------NWTSRSDHSSNIKLRIHSIQAELRRL-- 237
Query: 152 TIASCIMMKKMGRRSL-------------TFISSIGCGVSMTGLGLYIFATKDFWPEYKF 198
+ K L F ++ C + +T T+
Sbjct: 238 ------LKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLT--------TRFKQVTDFL 281
Query: 199 PAFVSYLPVL--MLMTFTAASTIGYLVVPWVMIGE---------VYPTKVRGIVGGLTTC 247
A + L MT T L++ ++ P ++ I +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 248 ACHFFIFLTV----------KSYNMFQTHLTKEGTFLMYGCISLLGTIFFY-VYLPETKN 296
+ + V S N+ + ++ M+ L ++F ++P
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK----MF--DRL--SVFPPSAHIPT--- 389
Query: 297 KTL------------QEIEEQFAGKS--KKH--------HSEIYVKPSQQIDSFG----- 329
L + + S +K S IY++ ++++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRS 448
Query: 330 FLRRYQI 336
+ Y I
Sbjct: 449 IVDHYNI 455
Score = 28.7 bits (63), Expect = 3.5
Identities = 19/173 (10%), Positives = 48/173 (27%), Gaps = 66/173 (38%)
Query: 4 EYSLGAFLSWDTVAA------ISTIIP-VLSIIAGCLMPESPSWLLSQGRKDACRNSLRR 56
+ L + + T P LSIIA + R
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI------------RDGLAT----- 343
Query: 57 LRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSG 116
++ K K + + + L+P ++ + S
Sbjct: 344 ---------------WDNWKHVNCDK---LTTIIESSLN--VLEPAEYRKMF---DRLS- 379
Query: 117 VNPVTFYAVNIFKDAGAHVNNNLAAVIMGIV--RLIFTIASCIMMKKMGRRSL 167
+F + ++ +++ ++ +I + +++ K+ + SL
Sbjct: 380 ----------VFPP-----SAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSL 416
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 29.9 bits (67), Expect = 1.3
Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 75 SKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH 134
+ + + K L +P + ++ Y F+ + F
Sbjct: 199 NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATGEQ- 256
Query: 135 VNNNLAAVIMGIVRLIFTIASCIMMKKMG----RRSLTFISSIGCGVSMTGLGLYIFATK 190
+ G V + + + +M R + + + FAT
Sbjct: 257 -----GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT- 310
Query: 191 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 250
S L V++L T LV + I + + + + C
Sbjct: 311 ------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358
Query: 251 FF--IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 301
IF++V + NM++ + +G +L+ G ++L T+ L +L
Sbjct: 359 QLAMIFMSVLAGNMYE-SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 28.0 bits (62), Expect = 5.5
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 283 GTIFFYVYLPETKNKTLQEIEE---QFAGKSKKHHSEIYVKPSQQIDS 327
G Y P K + + E Q + + ++Q +S
Sbjct: 41 GQAEVIAYYPLQGEKVISSVRELINQDVKDKLESKDNLVFYYTEQEES 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.427
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,104,301
Number of extensions: 294076
Number of successful extensions: 706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 16
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.0 bits)