RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11545
         (337 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 32/304 (10%), Positives = 76/304 (25%), Gaps = 15/304 (4%)

Query: 5   YSLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDV 64
             +  +     V      +  L  +A      +  ++ +         +   +R      
Sbjct: 152 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 211

Query: 65  EKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYA 124
                  Y+     +  +    + T   I     L   ++  +         +       
Sbjct: 212 GLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 271

Query: 125 VNIFKDAGAHVNNN---LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 181
              +     H   +    A  +     +  T+    M  K+ R +          +    
Sbjct: 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 331

Query: 182 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 241
             +Y                 +    ++ M        G +++  +   E+ P K  G  
Sbjct: 332 TIVYWM-----------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTA 380

Query: 242 GGLTTCACHFF-IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQ 300
            G T    +                    +G F++    S+L  I   V +   K +  Q
Sbjct: 381 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440

Query: 301 EIEE 304
            ++E
Sbjct: 441 LLQE 444


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 32.1 bits (71), Expect = 0.098
 Identities = 21/230 (9%), Positives = 51/230 (22%), Gaps = 10/230 (4%)

Query: 71  LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD 130
             +         +     +  ++     L     L    L           F        
Sbjct: 188 KTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFF 247

Query: 131 AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 190
                       + G V  +  + +  +M                 ++ T + +      
Sbjct: 248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR----- 302

Query: 191 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRG-IVGGLTTCAC 249
                    + +  + +  L  F        LV  +  I   +  +    I         
Sbjct: 303 -IIGSSFATSALEVVILKTLHMFEVP---FLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358

Query: 250 HFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 299
              +             +  +G +L+ G ++L  T+     L      +L
Sbjct: 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408


>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 25.3 bits (55), Expect = 6.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 122 FYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 166
            YAV++ +  GA V      ++    +++ T+ +C+M + M R S
Sbjct: 75  KYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRVS 119


>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 392

 Score = 25.9 bits (56), Expect = 8.9
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 285 IFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKPSQQIDSF 328
                 L E  N+  +  EE F+   +K   ++Y      +   
Sbjct: 275 GADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDT 318


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,241,060
Number of extensions: 55205
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 11
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.7 bits)