RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11546
(1634 letters)
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo
sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H*
1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 370 bits (951), Expect = e-116
Identities = 107/400 (26%), Positives = 167/400 (41%), Gaps = 53/400 (13%)
Query: 1142 GEDSYLQNTLYPVYHDSGFLMIQ--KQGQWGKLCMNQINNFIMKTLKWKISDLGKAICKS 1199
++ + LM+ +G W LC ++ + + C+
Sbjct: 2 DQEPLYPVQVSS---ADARLMVFDKTEGTWRLLCSSR----------SN-ARVAGLSCEE 47
Query: 1200 MTFRDLNEIEAVA-DPSTDDSIYYELSMNAINSSAATKSALLFQKTKCSQKQVVAVNCSS 1258
M F + + ++ + + C + + +A C
Sbjct: 48 MGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQ- 106
Query: 1259 LECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEGEFQCGATLISDQ 1318
+CG R + RIVGG + LG WPWQ +L +G CG +L+S
Sbjct: 107 -DCGRRK--------------LPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGD 151
Query: 1319 WLLSAGHCFYRAQDD--YWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFI--- 1373
W+L+A HCF W G + SP+ + ++ H Y+
Sbjct: 152 WVLTAAHCFPERNRVLSRWRVFAGAVA----QASPHGLQLGVQAVVYHGGYLPFRDPNSE 207
Query: 1374 ---NDISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQE 1428
NDI+++ + +P + Y++P+CLP L DG +CTV GWG G+ LQE
Sbjct: 208 ENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ-QAGVLQE 266
Query: 1429 VQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEP---DGRW 1485
++PIIS C ++ MFCAG+ GG DAC GDSGGP +C++ RW
Sbjct: 267 ARVPIISNDVCNGA--DFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRW 324
Query: 1486 SLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAASEY 1525
L G+ S G GCA A +PGVYTKVS++ W++ +
Sbjct: 325 RLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSE 364
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 356 bits (916), Expect = e-112
Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 24/278 (8%)
Query: 1254 VNCSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEGEFQCGAT 1313
+ CG R + R+ RI+GG ++ GS PW AA+Y G+ C +
Sbjct: 15 ASPGRQACGRRHK----------KRTFLRPRIIGGSSSLPGSHPWLAAIYI-GDSFCAGS 63
Query: 1314 LISDQWLLSAGHCFYRAQD-DYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQY-VDAG 1371
L+ W++SA HCF + D LG + Q I K I + Y V
Sbjct: 64 LVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNR--TTDVTQTFGIEKYIPYTLYSVFNP 121
Query: 1372 FINDISILKMKTP------FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDT 1425
+D+ ++++K S +V+PICLP P + G C + GWG L E + +
Sbjct: 122 SDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSS 181
Query: 1426 LQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRW 1485
L+E +P+++ +C ++ ++ NM CAG+ DAC GDSGGPL C++ +G
Sbjct: 182 LREALVPLVADHKCSSPEVY--GADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVA 238
Query: 1486 SLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAAS 1523
L G+ S G GC R ++PGVYT+V+NY+ W+ + +
Sbjct: 239 YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRPP 276
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 352 bits (906), Expect = e-112
Identities = 101/240 (42%), Positives = 144/240 (60%), Gaps = 10/240 (4%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDD--YWVARLGTL 1342
IVGG +A+ G+WPW LY + CGA+L+S WL+SA HC Y + W A LG
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 1343 RRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTP 1400
+ + L SP R I +I+++P Y NDI+++ ++ +++Y++PI LP N
Sbjct: 61 MK-SNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQV 119
Query: 1401 LTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGF 1460
G C++ GWG + D LQE +P++S C+++ +P Y +TENM CAG+
Sbjct: 120 FPPGRNCSIAGWGTVVY-QGTTADILQEADVPLLSNERCQQQ---MPEYNITENMICAGY 175
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNM 1520
E GG D+C GDSGGPLMCQE + RW L GVTS GY CA NRPGVY +VS + W+ + +
Sbjct: 176 EEGGIDSCQGDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 346 bits (889), Expect = e-109
Identities = 91/244 (37%), Positives = 130/244 (53%), Gaps = 13/244 (5%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQ---CGATLISDQWLLSAGHCFYRAQD-DYWVARLG 1340
IVGG + G WPWQ L+ Q CG ++I +QW+L+A HCFY + G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPN 1398
L + + +II+H QY A DI++LK++T +++ RPI LP
Sbjct: 61 ILNQSE--IKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKG 118
Query: 1399 TPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCA 1458
T C V GWG +TLQ+ ++P+++ EC+KR +++T M CA
Sbjct: 119 ERNVIYTDCWVTGWGYRKL-RDKIQNTLQKAKIPLVTNEECQKR---YRGHKITHKMICA 174
Query: 1459 GFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
G+ GG+DAC GDSGGPL C+ + W L+G+TS G GCA+ RPGVYT V Y+ W+
Sbjct: 175 GYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 1519 NMAA 1522
A
Sbjct: 234 KTQA 237
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 345 bits (888), Expect = e-109
Identities = 84/239 (35%), Positives = 124/239 (51%), Gaps = 12/239 (5%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTLR 1343
IVGG G WPWQA+L +G +CGATLI+ WL+SA HCF ++ W A G
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
+ P + R + +II+H +Y DIS+ ++ +P ++N V +CLP +
Sbjct: 61 K------PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEF 114
Query: 1402 TDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFE 1461
G + V G+G L G + L++ Q+ +I C + + +T M CAG
Sbjct: 115 QPGDVMFVTGFGALKNDGYS-QNHLRQAQVTLIDATTCNEPQAYND--AITPRMLCAGSL 171
Query: 1462 RGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNM 1520
G DAC GDSGGPL+ + W L G+ S G CA+ N+PGVYT+V+ W+ +
Sbjct: 172 EGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 347 bits (892), Expect = e-109
Identities = 82/280 (29%), Positives = 135/280 (48%), Gaps = 32/280 (11%)
Query: 1256 CSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEGE-----FQC 1310
+CG + +I+GG + + PW AA+Y+ + C
Sbjct: 8 ELKFQCGQKTLR-------------PRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVC 54
Query: 1311 GATLISDQWLLSAGHCFYRAQD-DYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVD 1369
G +L+S W++SA HCF + ++ LG R + + E + +ILH Y
Sbjct: 55 GGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNS--NTQGEMKFEVENLILHKDYSA 112
Query: 1370 AGFI--NDISILKMKTP------FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRV 1421
NDI++LK+++ S ++ ICLP GT C + G+G+ +
Sbjct: 113 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYL 172
Query: 1422 FPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEP 1481
+P+ L+ + +IS EC++ + VT M CA + D+C GDSGGPL+C
Sbjct: 173 YPEQLKMTVVKLISHRECQQPHYY--GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL- 229
Query: 1482 DGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
GR +L G+ S G GCA ++PGVYT+VS+++PW+ ++
Sbjct: 230 QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK 269
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H
1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H*
1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...
Length = 254
Score = 346 bits (890), Expect = e-109
Identities = 87/245 (35%), Positives = 124/245 (50%), Gaps = 11/245 (4%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTLR 1343
IVGG G PWQ L G CG TLI+ W++SA HCF + ++ +A LG
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTP- 1400
EQ R ++++I+ YV +DI++L++ P +++V P+CLP
Sbjct: 61 LSE--HDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSE 118
Query: 1401 --LTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPL-YRVTENMFC 1457
L V GWGQL + G L + +P + T +C +++ + +TE MFC
Sbjct: 119 RTLAFVRFSLVSGWGQLLDRGAT-ALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFC 177
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLY 1517
AG+ G +D+C GDSGGP G W L G+ S G GCA GVYT+VS YI WL
Sbjct: 178 AGYSDGSKDSCKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQ 236
Query: 1518 NNMAA 1522
M +
Sbjct: 237 KLMRS 241
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A*
3p8f_A*
Length = 241
Score = 345 bits (888), Expect = e-109
Identities = 93/248 (37%), Positives = 131/248 (52%), Gaps = 19/248 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQ-CGATLISDQWLLSAGHCFYRAQD------DYWVA 1337
+VGG +A G WPWQ +L+ G+ CGA+LIS WL+SA HC+ + W A
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 1338 RLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLP 1395
LG + ++ +P Q R + +II HP + D F DI++L+++ P +S+ VRPI LP
Sbjct: 61 FLGLHDQ-SQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLP 119
Query: 1396 HPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTE 1453
+ G V GWG G LQ+ ++ +I+ C L ++T
Sbjct: 120 DASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVINQTTCEN------LLPQQITP 172
Query: 1454 NMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYI 1513
M C GF GG D+C GDSGGPL E DGR GV S G GCA+ N+PGVYT++ +
Sbjct: 173 RMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFR 232
Query: 1514 PWLYNNMA 1521
W+ N
Sbjct: 233 DWIKENTG 240
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 345 bits (887), Expect = e-109
Identities = 95/246 (38%), Positives = 138/246 (56%), Gaps = 13/246 (5%)
Query: 1285 IVGGGNARLGSWPWQAAL---YKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLG 1340
IVGG + G WPWQ +L CG +LI QW+L+A HCF D W G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPN 1398
L + I +II+H Y + +DI+++K++ P ++ + +PI LP
Sbjct: 61 ILELSD--ITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKG 118
Query: 1399 TPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCA 1458
T T C V GWG E G + LQ+V +P+++ EC+KR Y++T+ M CA
Sbjct: 119 DTSTIYTNCWVTGWGFSKEKGE-IQNILQKVNIPLVTNEECQKR---YQDYKITQRMVCA 174
Query: 1459 GFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
G++ GG+DAC GDSGGPL+C+ +G W L+G+TS G GCAR +PGVYTKV+ Y+ W+
Sbjct: 175 GYKEGGKDACKGDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILE 233
Query: 1519 NMAASE 1524
+S+
Sbjct: 234 KTQSSD 239
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 345 bits (887), Expect = e-109
Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 14/247 (5%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTLR 1343
I+GG ++ GS PW AA+Y G+ C +L+ W++SA HCF + D LG
Sbjct: 1 IIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 1344 RGTKLPSPYEQLRPISKIILHPQY-VDAGFINDISILKMKTP------FSNYVRPICLPH 1396
+ Q I K I + Y V +D+ ++++K S +V+PICLP
Sbjct: 60 FNR--TTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPE 117
Query: 1397 PNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMF 1456
P + G C + GWG L E + +L+E +P+++ +C ++ ++ NM
Sbjct: 118 PGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVY--GADISPNML 175
Query: 1457 CAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWL 1516
CAG+ DAC GDSGGPL C++ +G L G+ S G GC R ++PGVYT+V+NY+ W+
Sbjct: 176 CAGYFDCKSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWI 234
Query: 1517 YNNMAAS 1523
+ +
Sbjct: 235 NDRIRPP 241
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 345 bits (887), Expect = e-109
Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 11/248 (4%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTLR 1343
I GG +A G WPWQ ++ EG CG +L+S+QW+LSA HCF + + +LG +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
+ S ++ + II HP Y+ G DI++L++ P FS Y+RPI LP
Sbjct: 61 LDS--YSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASF 118
Query: 1402 TDGTLCTVVGWGQLFEIGRV-FPDTLQEVQLPIISTAECRKR----TLFLPLYRVTENMF 1456
+G CTV GWG + + P LQ++++P+IS C + V E+M
Sbjct: 119 PNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMV 178
Query: 1457 CAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWL 1516
CAG+ GG+DAC GDSGGPL C +G W L G+ S G C NRPGVYT S+Y W+
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 1517 YNNMAASE 1524
+ + +
Sbjct: 238 QSKVTELQ 245
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 343 bits (883), Expect = e-108
Identities = 95/270 (35%), Positives = 133/270 (49%), Gaps = 27/270 (10%)
Query: 1258 SLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAAL-YKEGEFQCGATLIS 1316
S +CG R+VGG A SWPWQ +L + G CG TLIS
Sbjct: 1 SFDCGKPQVEPKKCPG----------RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLIS 50
Query: 1317 DQWLLSAGHCFYRAQD-DYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFIND 1375
+W+L+A HC ++ + LG + P+ Q +S++ L P D
Sbjct: 51 PEWVLTAAHCLEKSPRPSSYKVILGAHQEVN--LEPHVQEIEVSRLFLEPTR------KD 102
Query: 1376 ISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPI 1433
I++LK+ +P ++ V P CLP PN + D T C + GWG+ G L+E QLP+
Sbjct: 103 IALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET--QGTFGAGLLKEAQLPV 160
Query: 1434 ISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSN 1493
I C + RV CAG GG D+C GD+GGPL+C E ++ L GVTS
Sbjct: 161 IENKVCNR--YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFE-KDKYILQGVTSW 217
Query: 1494 GYGCARANRPGVYTKVSNYIPWLYNNMAAS 1523
G GCAR N+PGVY +VS ++ W+ M +
Sbjct: 218 GLGCARPNKPGVYVRVSRFVTWIEGVMRNN 247
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted,
protease, hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A*
2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A*
1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A*
1nfw_A* ...
Length = 241
Score = 341 bits (877), Expect = e-107
Identities = 78/245 (31%), Positives = 127/245 (51%), Gaps = 16/245 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKE-GEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLR 1343
IVGG + G PWQA L E E CG T++S+ ++L+A HC Y+A+ + R+G
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR--FKVRVGDRN 58
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLP---HPN 1398
+ E + + +I H ++ + DI++L++KTP F V P CLP
Sbjct: 59 T--EQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 1399 TPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCA 1458
+ L V G+G+ E G L+ +++P + C+ + + +T+NMFCA
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGE-QSTRLKMLEVPYVDRNSCKLSSS----FIITQNMFCA 171
Query: 1459 GFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
G++ DAC GDSGGP + + + + G+ S G GCAR + G+YTKV+ ++ W+
Sbjct: 172 GYDTKQEDACQGDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDR 230
Query: 1519 NMAAS 1523
+M
Sbjct: 231 SMKTR 235
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens}
PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A*
1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 340 bits (875), Expect = e-107
Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
+VGG +A+ G +PWQ L + + CG ++++++W+++A HC G
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK--ITVVAGEHNI 58
Query: 1345 GTKLPSPYEQLRPISKIILHPQY--VDAGFINDISILKMKTP--FSNYVRPICLPHPNT- 1399
EQ R + +II H + + +DI++L++ P ++YV PIC+
Sbjct: 59 EE--TEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYT 116
Query: 1400 -PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCA 1458
V GWG++F GR LQ +++P++ A C + T + +T NMFCA
Sbjct: 117 NIFLKFGSGYVSGWGRVFHKGR-SALVLQYLRVPLVDRATCLRST----KFTITNNMFCA 171
Query: 1459 GFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
GF GGRD+C GDSGGP + + +G L G+ S G CA + G+YTKVS Y+ W+
Sbjct: 172 GFHEGGRDSCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Query: 1519 NM 1520
Sbjct: 231 KT 232
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET:
NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
PDB: 1fiz_A*
Length = 290
Score = 342 bits (880), Expect = e-107
Identities = 93/285 (32%), Positives = 137/285 (48%), Gaps = 18/285 (6%)
Query: 1285 IVGGGNARLGSWPWQAALY------KEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVA 1337
I+GG +A G+WPW +L CG +L++ QWLL+A HCF + W
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 1338 RLGTLRRG---TKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPI 1392
G K P Q R + KII+H +Y + NDI+++K+ P +++ P
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPG 120
Query: 1393 CLPHPN-TPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRV 1451
CLP P C V GWG L E R LQE ++ +I C R+
Sbjct: 121 CLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNS--TRWYNGRI 178
Query: 1452 TENMFCAGFERGGRDACLGDSGGPLMCQEP-DGRWSLMGVTSNGYGCARANRPGVYTKVS 1510
CAG+ G D C GDSGGPLMC++ + + ++G+TS G GCARA RPGVYT
Sbjct: 179 RSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTW 238
Query: 1511 NYIPWLYNNMAASEYNMMRNETQMSRQHVCNGHRCPLGECLPKAR 1555
+Y+ W+ + + ++ +M++ T + G + G P R
Sbjct: 239 SYLNWIASKIGSTAVHMIQLPT--ASPASTPGAQASSGSVQPSVR 281
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 340 bits (874), Expect = e-107
Identities = 74/245 (30%), Positives = 111/245 (45%), Gaps = 13/245 (5%)
Query: 1285 IVGGGNARLGSWPWQAALYKE--GEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTL 1342
IVGG AR +PWQ ++ ++ CG ++I+D+W++ A HC +G
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60
Query: 1343 RRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTP 1400
S Q + I ++ Y A ND+S++K F V PIC P P
Sbjct: 61 DSSA--ASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPAND 118
Query: 1401 LTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGF 1460
GWG + G P L+ V L I + A C + ++M CA
Sbjct: 119 YV-YRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV---YTSDTIYDDMICATD 174
Query: 1461 ERG--GRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
G RD+C GDSGGPL ++ G +SL+G+ S G GCA PGVY++V + W+ +
Sbjct: 175 NTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITD 233
Query: 1519 NMAAS 1523
+ +
Sbjct: 234 TITNN 238
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 340 bits (873), Expect = e-107
Identities = 95/255 (37%), Positives = 137/255 (53%), Gaps = 24/255 (9%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGE------FQCGATLISDQWLLSAGHCFYRAQD-DYWVA 1337
I GG A + S PWQAA++ + F CG LIS W+LSA HCF +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 1338 RLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP------FSNYVRP 1391
LG R P EQ + K I+H ++ D + NDI++L++K+ S+ VR
Sbjct: 61 ILGRTYRVV--PGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRT 118
Query: 1392 ICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRV 1451
+CLP + L D T C + G+G+ + + + L+E + + ++ C + L V
Sbjct: 119 VCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQ--HLLNRTV 176
Query: 1452 TENMFCAGFERGG------RDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGV 1505
T+NM CAG R G DAC GDSGGPL+C DGR +L+G+ S G GC + + PGV
Sbjct: 177 TDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLN-DGRMTLVGIISWGLGCGQKDVPGV 235
Query: 1506 YTKVSNYIPWLYNNM 1520
YTKV+NY+ W+ +NM
Sbjct: 236 YTKVTNYLDWIRDNM 250
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 340 bits (873), Expect = e-107
Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 19/251 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGE-----FQCGATLISDQWLLSAGHCFYRAQD-DYWVAR 1338
I+GG + + PW AA+Y+ + CG +LIS W++SA HCF + ++
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 1339 LGTLRRGTKLPSPYEQLRPISKIILHPQY--VDAGFINDISILKMKTP------FSNYVR 1390
LG R + + E + +ILH Y NDI++LK+++ S ++
Sbjct: 61 LGRSRLNS--NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQ 118
Query: 1391 PICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYR 1450
I LP GT C + G+G+ ++P+ L+ + +IS EC++ +
Sbjct: 119 TISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY--GSE 176
Query: 1451 VTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVS 1510
VT M CA + D+C GDSGGPL+C GR +L G+ S G GCA ++PGVYT+VS
Sbjct: 177 VTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 1511 NYIPWLYNNMA 1521
+++PW+ ++
Sbjct: 236 HFLPWIRSHTK 246
>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase
complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP:
b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A*
3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A*
1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A*
1zrb_A* ...
Length = 289
Score = 341 bits (876), Expect = e-107
Identities = 104/289 (35%), Positives = 146/289 (50%), Gaps = 32/289 (11%)
Query: 1260 ECGIRP----QANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEG--EFQCGAT 1313
+CG+RP ++ L S RIV G +A +G PWQ L+++ E CGA+
Sbjct: 2 DCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGAS 61
Query: 1314 LISDQWLLSAGHCFYRAQDD------YWVARLGTLRRGTKLPSPYEQLRPISKIILHPQY 1367
LISD+W+L+A HC D + R+G R T+ E++ + KI +HP+Y
Sbjct: 62 LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSR-TRYERNIEKISMLEKIYIHPRY 120
Query: 1368 -VDAGFINDISILKMKTP--FSNYVRPICLPHPNTP---LTDGTLCTVVGWGQLFE---- 1417
DI+++K+K P FS+Y+ P+CLP T L G V GWG L E
Sbjct: 121 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 180
Query: 1418 -IGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGF---ERGGRDACLGDSG 1473
+G+ P LQ V LPI+ C+ T R+T+NMFCAG+ E DAC GDSG
Sbjct: 181 NVGKGQPSVLQVVNLPIVERPVCKDSTR----IRITDNMFCAGYKPDEGKRGDACEGDSG 236
Query: 1474 GPLMCQEP-DGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
GP + + P + RW MG+ S G GC R + G YT V W+ +
Sbjct: 237 GPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 338 bits (870), Expect = e-106
Identities = 89/268 (33%), Positives = 133/268 (49%), Gaps = 28/268 (10%)
Query: 1261 CGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAAL-YKEGEFQCGATLISDQW 1319
CG+ + G SRIV G A GSWPWQ +L K G CG +LI++ W
Sbjct: 1 CGVPAIQPVLSG---------LSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENW 51
Query: 1320 LLSAGHCFYRAQDDYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISIL 1379
+++A HC V G +G+ S Q I+K+ + +Y NDI++L
Sbjct: 52 VVTAAHCGVT---TSDVVVAGEFDQGS--SSEKIQKLKIAKVFKNSKYNSLTINNDITLL 106
Query: 1380 KMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTA 1437
K+ T FS V +CLP + GT C GWG PD LQ+ LP++S
Sbjct: 107 KLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNT 166
Query: 1438 ECRKRTLFLPLY--RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY 1495
C+K + ++ + M CAG G +C+GDSGGPL+C++ +G W+L+G+ S G
Sbjct: 167 NCKK------YWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK-NGAWTLVGIVSWGS 217
Query: 1496 GCARANRPGVYTKVSNYIPWLYNNMAAS 1523
+ PGVY +V+ + W+ +AA+
Sbjct: 218 STCSTSTPGVYARVTALVNWVQQTLAAN 245
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy
immune response, innate immunity, sushi, coagulation,
compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B
Length = 251
Score = 336 bits (864), Expect = e-106
Identities = 81/255 (31%), Positives = 127/255 (49%), Gaps = 25/255 (9%)
Query: 1285 IVGGGNARLGSWPWQAAL-YKEGEFQCGATLISDQWLLSAGHCFYRAQD----------- 1332
I G A+ G+ PW A L + G+ CG +L+ W+++A HC +++ D
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 1333 ---DYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSN 1387
+ LG R EQ + LHPQY F ND++++++ +
Sbjct: 61 LSPSDFKIILGKHWRLR--SDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNA 118
Query: 1388 YVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLP 1447
+V PICLP +G + V GWG+ F FP+TL E+++PI+ + C+K L
Sbjct: 119 FVMPICLPEGPQQ--EGAMVIVSGWGKQFLQR--FPETLMEIEIPIVDHSTCQKAYAPLK 174
Query: 1448 LYRVTENMFCAGFERGGRDACLGDSGGPLMCQ-EPDGRWSLMGVTSNGYGCARANRPGVY 1506
+VT +M CAG + GG+DAC GDSGGP++ G+W L+G S G C + +R GVY
Sbjct: 175 -KKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVY 233
Query: 1507 TKVSNYIPWLYNNMA 1521
+ + + W+
Sbjct: 234 SYIHHNKDWIQRVTG 248
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 334 bits (860), Expect = e-105
Identities = 79/251 (31%), Positives = 116/251 (46%), Gaps = 20/251 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKE-GEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLR 1343
++ G R G PWQ L + CGA LI W+L+A HC ++ + RLG
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKK--LLVRLGEYD 58
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
+E I ++ +HP Y + NDI++L + P S + PICLP
Sbjct: 59 LRR--WEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAE 116
Query: 1402 TD----GTLCTVVGWGQLFEIGR----VFPDTLQEVQLPIISTAECRKRTLFLPLYRVTE 1453
+ G V GWG + L +++P++ EC + V+E
Sbjct: 117 RELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS----NMVSE 172
Query: 1454 NMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYI 1513
NM CAG +DAC GDSGGP++ G W L+G+ S G GC + GVYTKVS Y+
Sbjct: 173 NMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYL 231
Query: 1514 PWLYNNMAASE 1524
W++ ++ E
Sbjct: 232 DWIHGHIRDKE 242
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution,
specific inhibitor, allostery, hydrolase; 1.28A {Homo
sapiens}
Length = 242
Score = 334 bits (858), Expect = e-105
Identities = 86/248 (34%), Positives = 119/248 (47%), Gaps = 19/248 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDD--YWVARLGTL 1342
I GG A+ G +PWQ + G L+ D W+L+A H Y + D R+GTL
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 1343 RRGTKLPSPYEQLRPISKIILHPQYV-DAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
+R SP+ + +H Y DAGF NDI+++K+ ++ + PICLP
Sbjct: 59 KR----LSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEA 114
Query: 1400 P--LTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRK--RTLFLPLYRVTENM 1455
+ + T GWG L V +PI+ +C P VT NM
Sbjct: 115 ESFMRTDDIGTASGWGLTQR--GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 172
Query: 1456 FCAGFERGGRDACLGDSGGPLMCQ-EPDGRWSLMGVTSNG-YGCARANRPGVYTKVSNYI 1513
CAG E GG+D+C GDSGG L+ RW + G+ S G C A + GVYTKV NYI
Sbjct: 173 LCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYI 232
Query: 1514 PWLYNNMA 1521
PW+ N ++
Sbjct: 233 PWIENIIS 240
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 328 bits (844), Expect = e-103
Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 12/247 (4%)
Query: 1284 RIVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTL 1342
I+GG S P+ A++ G CG LI QW+L+A HC YR LG
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 1343 RRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTP 1400
+Q I K I + NDI ++K++T + +V+ + + T
Sbjct: 62 SL--SKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIR-SKTS 118
Query: 1401 LTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGF 1460
L GT C V GWG DTL+EV + ++S C ++ + +T++M CAG
Sbjct: 119 LRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGD 178
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVS-NYIPWLYNN 1519
+G +D+C GD+GGPL+C + + S G+ C A +PG+YT ++ Y W+ +N
Sbjct: 179 AKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233
Query: 1520 MAASEYN 1526
+ N
Sbjct: 234 LVPPHTN 240
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 328 bits (844), Expect = e-103
Identities = 97/260 (37%), Positives = 135/260 (51%), Gaps = 28/260 (10%)
Query: 1285 IVGGGNARLGSWPWQAALYKEG--EFQCGATLISDQWLLSAGHCFYRAQDD------YWV 1336
IV G +A +G PWQ L+++ E CGA+LISD+W+L+A HC D +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 1337 ARLGTLRRGTKLPSPYEQLRPISKIILHPQY-VDAGFINDISILKMKTP--FSNYVRPIC 1393
R+G R T+ E++ + KI +HP+Y DI+++K+K P FS+Y+ P+C
Sbjct: 61 VRIGKHSR-TRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 1394 LPHPNTP---LTDGTLCTVVGWGQLFE-----IGRVFPDTLQEVQLPIISTAECRKRTLF 1445
LP T L G V GWG L E +G+ P LQ V LPI+ C+ T
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR- 178
Query: 1446 LPLYRVTENMFCAGF---ERGGRDACLGDSGGPLMCQEP-DGRWSLMGVTSNGYGCARAN 1501
R+T+NMFCAG+ E DAC GDSGGP + + P + RW MG+ S G GC R
Sbjct: 179 ---IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDG 235
Query: 1502 RPGVYTKVSNYIPWLYNNMA 1521
+ G YT V W+ +
Sbjct: 236 KYGFYTHVFRLKKWIQKVID 255
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 327 bits (841), Expect = e-103
Identities = 88/245 (35%), Positives = 122/245 (49%), Gaps = 18/245 (7%)
Query: 1285 IVGGGNARLGSWPWQAAL----YKEGEFQCGATLISDQWLLSAGHCFYRAQD---DYWVA 1337
IVGG +A LG +P+Q + CGA++ ++ + ++AGHC Y
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 1338 RLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLP 1395
G L EQ+ +SKIILH + NDIS+LK+ F++ V PI LP
Sbjct: 61 VAGELDMSV--NEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP 118
Query: 1396 HPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENM 1455
V GWG E G PD LQ+V +P++S +CR + ++M
Sbjct: 119 EQGHT--ATGDVIVTGWGTTSEGGN-TPDVLQKVTVPLVSDEDCRAD---YGADEILDSM 172
Query: 1456 FCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPW 1515
CAG GG+D+C GDSGGPL + G L G+ S GYGCAR PGVYT+VS ++ W
Sbjct: 173 ICAGVPEGGKDSCQGDSGGPLAASD-TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDW 231
Query: 1516 LYNNM 1520
+ N
Sbjct: 232 IKANA 236
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 341 bits (877), Expect = e-102
Identities = 99/289 (34%), Positives = 145/289 (50%), Gaps = 16/289 (5%)
Query: 1243 KTKCSQKQVVAVNCSSL---ECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQ 1299
K KC K + + + GI + N + RIVGG + G WPWQ
Sbjct: 343 KGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQ 402
Query: 1300 AALYKEG---EFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTLRRGTKLPSPYEQL 1355
L+ CG ++I +QW+L+A HCFY + G L +
Sbjct: 403 VTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSE--IKEDTSF 460
Query: 1356 RPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWG 1413
+ +II+H QY A DI++LK++T +++ RPICLP T C V GWG
Sbjct: 461 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWG 520
Query: 1414 QLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSG 1473
++ +TLQ+ ++P+++ EC+KR +++T M CAG+ GG+DAC GDSG
Sbjct: 521 YRKLRDKI-QNTLQKAKIPLVTNEECQKR---YRGHKITHKMICAGYREGGKDACKGDSG 576
Query: 1474 GPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAA 1522
GPL C+ + W L+G+TS G GCA+ RPGVYT V Y+ W+ A
Sbjct: 577 GPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA 624
Score = 31.4 bits (71), Expect = 3.0
Identities = 12/109 (11%), Positives = 24/109 (22%), Gaps = 12/109 (11%)
Query: 1001 CGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYECE 1060
+ + +D + C K+C + C F+
Sbjct: 290 FCHSSFYHDTDFLGEELDIVAAKSHEACQ------------KLCTNAVRCQFFTYTPAQA 337
Query: 1061 WCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIETRSPS 1109
C+ G+ C + G + C T+
Sbjct: 338 SCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKP 386
Score = 30.6 bits (69), Expect = 5.8
Identities = 10/99 (10%), Positives = 20/99 (20%), Gaps = 24/99 (24%)
Query: 1532 TQMSRQHVCNGHRCP----------LGECLPKARVCNGYMECSDGKCE------------ 1569
T++ + +G ++ K
Sbjct: 267 TRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVR 326
Query: 1570 -MNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCAD 1607
++ C KC L ++GS K
Sbjct: 327 CQFFTYTPAQASCNEGKGKCY-LKLSSNGSPTKILHGRG 364
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A
{Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A
1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A*
1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*
Length = 224
Score = 326 bits (837), Expect = e-102
Identities = 77/237 (32%), Positives = 114/237 (48%), Gaps = 16/237 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG +A G +P+ ++ + G CG +L++ +L+A HC + R G+L R
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
+ +S + +HP Y +G ND++ILK+ T + L +
Sbjct: 61 -----TSGGITSSLSSVRVHPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPV 113
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
G+ TV GWG E G P L +V +PI+S A CR + +T MFCAG
Sbjct: 114 AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQ---YGTSAITNQMFCAGVSS 170
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNN 1519
GG+D+C GDSGGP++ +L+G S G GCAR N GVY V ++
Sbjct: 171 GGKDSCQGDSGGPIVD----SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET:
BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A
2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 324 bits (833), Expect = e-102
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 17/238 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTLR 1343
+VGG A G +P+ L CG L + +L+A HC + + A G +
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTPFSNYVRPICLPHPNTPLTD 1403
L S +K++ P + + D +++K+ P + +P T
Sbjct: 57 ----LQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN---QPTLKIATTTAYNQ 109
Query: 1404 GTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERG 1463
GT TV GWG E G L + +P +S A CR + V M CAG++
Sbjct: 110 GT-FTVAGWGANREGGS-QQRYLLKANVPFVSDAACRSSS---SFILVANEMICAGYDTK 164
Query: 1464 GRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
D C GDSGGP+ ++ W +G+ S G GCAR + GVYT+VS + + +
Sbjct: 165 QEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 324 bits (832), Expect = e-101
Identities = 77/246 (31%), Positives = 116/246 (47%), Gaps = 17/246 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQ---CGATLISDQWLLSAGHCFYRAQDDYWVARLGT 1341
++GG NA G +PWQ + ++ CGA+L+S LSA HC + G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 1342 LRRGTKLPSPYEQLRPISKIILHPQY--VDAGFINDISILKMKTP--FSNYVRPICLPHP 1397
++ + Q + +H Y A + NDI+IL + T ++ LP
Sbjct: 61 WQQSD---TSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPAN 117
Query: 1398 NTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFC 1457
N GT C + GWG+ + PD LQ+ +P+I+TA+C + + + +N C
Sbjct: 118 NNNDYAGTTCVISGWGRTDGTNNL-PDILQKSSIPVITTAQCTAAMVGVGGANIWDNHIC 176
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTS----NGYGCARANRPGVYTKVSNYI 1513
G AC GDSGGPL C DG ++GVTS +G G + P VYT+VS Y+
Sbjct: 177 VQDPAGNTGACNGDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYL 234
Query: 1514 PWLYNN 1519
W+ +N
Sbjct: 235 GWIGDN 240
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG;
chymotrypsin homology, hormone/growth factor complex;
2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 324 bits (832), Expect = e-101
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 14/239 (5%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
+V G R + W +L + CG +LI + W+L+A CF + A LG
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDV 59
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
+ +Q+ +S+++ P+ +D+ ++K+ P ++V I LP+ + +
Sbjct: 60 HGRGDEKCKQVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIP 113
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
+ T C+V GWG I + L+ L I+ +C + + E+ CAG E+
Sbjct: 114 EKTSCSVYGWGYTGLIN--YDGLLRVAHLYIMGNEKCSQ--HHRGKVTLNESEICAGAEK 169
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
G C GD GGPL+C++ ++GV G GCA NRPG++ +V+ Y W++ +
Sbjct: 170 IGSGPCEGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL 227
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement
pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 324 bits (832), Expect = e-101
Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 22/252 (8%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDY-----WVARL 1339
I+GG A++G++PWQ G + G L+ D+W+L+A H Y + + L
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 1340 GTLRRGTKLPSPYEQLRPISKIILHPQYVDAG---FINDISILKMKTP--FSNYVRPICL 1394
G PI ++ +HP Y F DI++L+++ + PICL
Sbjct: 59 GHTNVEE---LMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 115
Query: 1395 PHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFL-PLYRVTE 1453
P +T G + V G+G + E L+ V+LP+ + C + ++
Sbjct: 116 PDNDTFYDLGLMGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENWLRGKNRMDVFSQ 172
Query: 1454 NMFCAGFERGGRDACLGDSGGPLMCQEPD-GRWSLMGVTSNGYGCARANRPGVYTKVSNY 1512
NMFCAG +DAC GDSGG ++P+ RW G+ S G GC+R G YTKV NY
Sbjct: 173 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNY 230
Query: 1513 IPWLYNNMAASE 1524
+ W+ M +
Sbjct: 231 VDWIKKEMEEED 242
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 331 bits (849), Expect = e-101
Identities = 103/295 (34%), Positives = 144/295 (48%), Gaps = 32/295 (10%)
Query: 1254 VNCSSLECGIRPQANN----IWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEG--E 1307
+CG+RP L S RIV G +A +G PWQ L+++ E
Sbjct: 131 FGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQE 190
Query: 1308 FQCGATLISDQWLLSAGHCFYRAQDD------YWVARLGTLRRGTKLPSPYEQLRPISKI 1361
CGA+LISD+W+L+A HC D + R+G R T+ E++ + KI
Sbjct: 191 LLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSR-TRYERNIEKISMLEKI 249
Query: 1362 ILHPQY-VDAGFINDISILKMKTP--FSNYVRPICLP---HPNTPLTDGTLCTVVGWGQL 1415
+HP+Y DI+++K+K P FS+Y+ P+CLP + L G V GWG L
Sbjct: 250 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 309
Query: 1416 FE-----IGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGF---ERGGRDA 1467
E +G+ P LQ V LPI+ C+ T R+T+NMFCAG+ E DA
Sbjct: 310 KETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR----IRITDNMFCAGYKPDEGKRGDA 365
Query: 1468 CLGDSGGPLMCQEP-DGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
C GDSGGP + + P + RW MG+ S G GC R + G YT V W+ +
Sbjct: 366 CEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420
Score = 36.4 bits (84), Expect = 0.077
Identities = 10/87 (11%), Positives = 14/87 (16%), Gaps = 10/87 (11%)
Query: 1021 DGSDEKNCSC-----ADFLKSQFLTRKICDGIIDCWDFSDEYECE-----WCSPGQYICP 1070
DE+ C L + D DE +
Sbjct: 67 PDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFF 126
Query: 1071 NSRVCIERTRLCDGIKDCPLGDDEKQC 1097
N C E +
Sbjct: 127 NPATFGSGEADCGLRPLFEKKSLEDKT 153
Score = 30.6 bits (69), Expect = 4.4
Identities = 11/83 (13%), Positives = 16/83 (19%), Gaps = 13/83 (15%)
Query: 1557 CNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSC-----ADFLKS 1611
C + + F V + C DE+ C
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQ-LVE--NFC-----RNPDGDEEGVWCYVAGKPGDFGY 87
Query: 1612 QFLTRKICDGIIDCWDFSDEYEC 1634
L + D DE
Sbjct: 88 CDLNYCEEAVEEETGDGLDEDSD 110
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 329 bits (846), Expect = e-101
Identities = 90/290 (31%), Positives = 130/290 (44%), Gaps = 33/290 (11%)
Query: 1243 KTKCSQKQVVAVNCSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAAL 1302
S+ + C CG+ + +I GG A+ G +PWQ +
Sbjct: 134 FWTSSKGEKSLPVCEP-VCGLSART-------------TGGQIYGGQKAKPGDFPWQVLI 179
Query: 1303 YKEGEFQCGATLISDQWLLSAGHCFYRAQDD--YWVARLGTLRRGTKLPSPYEQLRPISK 1360
G L+ D W+L+A H Y + D R+GTL+R SP+
Sbjct: 180 L--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKR----LSPHYTQAWSEA 233
Query: 1361 IILHPQYV-DAGFINDISILKMKTP--FSNYVRPICLPHPN--TPLTDGTLCTVVGWGQL 1415
+ +H Y DAGF NDI+++K+ ++ + PICLP + + + T GWG
Sbjct: 234 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 293
Query: 1416 FEIGRVFPDTLQEVQLPIISTAECRK--RTLFLPLYRVTENMFCAGFERGGRDACLGDSG 1473
L V +PI+ +C P VT NM CAG E GG+D+C GDSG
Sbjct: 294 QR--GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSG 351
Query: 1474 GPLMCQEP-DGRWSLMGVTSNG-YGCARANRPGVYTKVSNYIPWLYNNMA 1521
G L+ + RW + G+ S G C A + GVYTKV NYIPW+ N ++
Sbjct: 352 GALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401
Score = 30.9 bits (70), Expect = 3.4
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 23/105 (21%)
Query: 990 RSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIID 1049
+ C+ + S+ C +VDC D + +++ +T
Sbjct: 62 TAVCQKDGSWDRPMPAC--------SIVDCGPPDDLPSGRV-EYITGPGVTTYKAVIQYS 112
Query: 1050 CWDFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDE 1094
C + + + G+Y+C DG G+
Sbjct: 113 C---EETFYTMKVNDGKYVCE-----------ADGFWTSSKGEKS 143
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 322 bits (827), Expect = e-101
Identities = 81/268 (30%), Positives = 120/268 (44%), Gaps = 27/268 (10%)
Query: 1261 CGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAAL----YKEGEFQCGATLIS 1316
CG N+ +R+VGG +A SWPWQ +L CG TLI+
Sbjct: 1 CGAPIFQPNL-----------SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLIT 49
Query: 1317 DQWLLSAGHCFYRAQDDYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDI 1376
+L+A HC + LG + + I +H ++ NDI
Sbjct: 50 PNHVLTAAHCISNTLT--YRVALGKNNLEVE-DEAGSLYVGVDTIFVHEKWNSFLVRNDI 106
Query: 1377 SILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPII 1434
+++K+ + ++ CLP + L C V GWG+L+ G LQ+ P++
Sbjct: 107 ALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGP-IAAELQQGLQPVV 165
Query: 1435 STAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTS-- 1492
A C +R + V E M CAG + G AC GDSGGPL CQ DG+W + G+ S
Sbjct: 166 DYATCSQRDWW--GTTVKETMVCAGGD-GVISACNGDSGGPLNCQA-DGQWDVRGIVSFG 221
Query: 1493 NGYGCARANRPGVYTKVSNYIPWLYNNM 1520
+G C +P V+T+VS YI W+ +
Sbjct: 222 SGLSCNTFKKPTVFTRVSAYIDWINQKL 249
>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone,
hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo
sapiens} SCOP: b.47.1.2
Length = 228
Score = 321 bits (825), Expect = e-100
Identities = 95/241 (39%), Positives = 133/241 (55%), Gaps = 18/241 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKE-GEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLR 1343
IVGG N + G PWQA L E E CG T++S+ ++L+A HC Y+A + R+G
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRN 58
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
+ E + + +I H ++ + DI++L++KTP F V P LP P
Sbjct: 59 T--EQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP--TAPP 114
Query: 1402 TDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFE 1461
GT C + GWG G +PD LQ + P++S A+C ++T NMFC GF
Sbjct: 115 ATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG----KITSNMFCVGFL 170
Query: 1462 RGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
GG+D+C GDSGGP++C L GV S G GCA+ N+PGVYTKV NY+ W+ N +A
Sbjct: 171 EGGKDSCQGDSGGPVVC-----NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225
Query: 1522 A 1522
A
Sbjct: 226 A 226
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 319 bits (820), Expect = e-100
Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQ---CGATLISDQWLLSAGHCFYRAQDD--YWVARL 1339
IVGG A WPWQ +L + CG +LI QW+L+A HC D +L
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 1340 GTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHP 1397
+QL P+S+II+HPQ+ DI++L+++ P S+ V + LP
Sbjct: 61 REQHL-----YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPA 115
Query: 1398 NTPLTDGTLCTVVGWGQLFEIGRV-FPDTLQEVQLPIISTAECRKR-----TLFLPLYRV 1451
+ G C V GWG + + P L++V++PI+ C + + +
Sbjct: 116 SETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRII 175
Query: 1452 TENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSN 1511
++M CAG RD+C GDSGGPL+C+ +G W GV S G GCA+ NRPG+YT+V+
Sbjct: 176 RDDMLCAG--NSQRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTY 232
Query: 1512 YIPWLYNNMAAS 1523
Y+ W+++ +
Sbjct: 233 YLDWIHHYVPKK 244
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 319 bits (820), Expect = e-100
Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 18/249 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQ----CGATLISDQWLLSAGHCFYRAQDDYWVARLG 1340
+VGG +AR SWPWQ +L + Q CG TL+ W+L+A HC ++ + LG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRT--YRVVLG 58
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFI--NDISILKMKTP--FSNYVRPICLPH 1396
T P +SK+++H + NDI++LK+ +P ++ ++ CLP
Sbjct: 59 RHSLST--NEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPA 116
Query: 1397 PNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMF 1456
T L + +C V GWG+L PD LQ+ QL ++ A C K + V NM
Sbjct: 117 AGTILPNNYVCYVTGWGRLQT-NGASPDILQQGQLLVVDYATCSKPGWWG--STVKTNMI 173
Query: 1457 CAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTS--NGYGCARANRPGVYTKVSNYIP 1514
CAG + G +C GDSGGPL CQ +G+W + G+ S + GC ++P V+T+VSNYI
Sbjct: 174 CAGGD-GIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYID 232
Query: 1515 WLYNNMAAS 1523
W+ + +A +
Sbjct: 233 WINSVIANN 241
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 331 bits (850), Expect = 1e-99
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 29/315 (9%)
Query: 1222 YELSMNAINSSAATKSALLFQKTKCSQKQVVAVNCSSLECGIRPQANNIWGSVNLTRSMR 1281
E+ S A ++ +L ++++ + L CG++ +R
Sbjct: 271 DEVGCAGFASVAQEETEILTADMDAERRRIKS-LLPKLSCGVKN-----------RMHIR 318
Query: 1282 HSRIVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGT 1341
RIVGG A+LG PWQ A+ CG I W+L+A HC ++ +
Sbjct: 319 RKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTV 378
Query: 1342 LRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP------FSNYVRPICLP 1395
+ + + +II H Y + NDI++++MK P C+P
Sbjct: 379 VDW-IHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVP 437
Query: 1396 HPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENM 1455
C V GWG+ + R +LQ ++ +IS C K F + M
Sbjct: 438 WSPYLFQPNDTCIVSGWGREKDNER--VFSLQWGEVKLISN--CSK---FYGNRFYEKEM 490
Query: 1456 FCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPW 1515
CAG G DAC GDSGGPL+C + + + GV S G C + PGVYTKV+NY W
Sbjct: 491 ECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDW 550
Query: 1516 LYNNM---AASEYNM 1527
+ ++ S+YN+
Sbjct: 551 ISYHVGRPFISQYNV 565
Score = 86.9 bits (215), Expect = 2e-17
Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 14/125 (11%)
Query: 1523 SEYNMMRNETQMSRQHVCNGHRCPLGECLPKARVCNGYMECSDGKCEMNS-------SFR 1575
++ N T+ H C G L EC R GY + +D C F+
Sbjct: 152 KLSDLSINSTECLHVH-CRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQ 210
Query: 1576 CGNGECVSIGSKCNQLVDCADGSDEKNCSC--ADFLKSQFLT----RKICDGIIDCWDFS 1629
C NG+ +S C+ + DC D SDE C + + C+G +DC
Sbjct: 211 CVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGE 270
Query: 1630 DEYEC 1634
DE C
Sbjct: 271 DEVGC 275
Score = 83.4 bits (206), Expect = 2e-16
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 976 SKERNQTEFHLSVNRSEC-EMN-SSFRCGNGECVSIGSKCNQLVDCADGSDE---KNCSC 1030
+R LS+N +EC ++ EC + D AD +
Sbjct: 146 DTQRRFKLSDLSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPM 205
Query: 1031 ADFLKSQ----FLTRKICDGIIDCWDFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIK 1086
DF + K CDGI DC D SDE C+ C + C S VCI C+G
Sbjct: 206 DDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHC-KSGVCIPSQYQCNGEV 264
Query: 1087 DCPLGDDEKQC 1097
DC G+DE C
Sbjct: 265 DCITGEDEVGC 275
Score = 73.0 bits (179), Expect = 4e-13
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 993 CEMNSSFRCGNGECVSIGSK----------CNQLVDCADGSDEKNCSCAD-FLKSQFLTR 1041
C+ + S R N C+ +G + + L + +C + L T+
Sbjct: 123 CKSSWSMREANVACLDLGFQQGADTQRRFKLSDLSINSTECLHVHCRGLETSLAECTFTK 182
Query: 1042 KICDGIIDCWDFSDE-YECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINL 1100
+ G D D + + + C N + I + + CDGI DC DE C
Sbjct: 183 RRTMGYQDFADVVCYTQKADSPMDDFFQCVNGK-YISQMKACDGINDCGDQSDELCCKAC 241
Query: 1101 FPIETRSPSSTYLRN 1115
S + +
Sbjct: 242 QGKGFHCKSGVCIPS 256
Score = 64.6 bits (157), Expect = 2e-10
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDGKCEMN------SSFRCGNGECVSIGSKCNQLVD 1593
+ +C G+ + + + C+G +C D E+ F C +G C+ +CN VD
Sbjct: 206 DDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVD 265
Query: 1594 CADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYEC 1634
C G DE C+ + + D +
Sbjct: 266 CITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPK 306
Score = 36.4 bits (84), Expect = 0.076
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 1529 RNETQMSRQHV--CNGHRCPLGEC---LPKARVCNGYMECSDGKCEMNSSFRCGNGECVS 1583
+ T +S V RC G C LP NG C+ + + + + EC+
Sbjct: 18 KKYTHLSCDKVFCQPWQRCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLH 77
Query: 1584 IGSKCNQLVDCADGSD 1599
G+K C
Sbjct: 78 PGTKFLNNGTCTAEGK 93
Score = 34.5 bits (79), Expect = 0.30
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 1541 NGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADG-SD 1599
G C G C+P CNG ++C G+ E+ + + + + + S
Sbjct: 244 KGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSL 303
Query: 1600 EKNCSCADFLKSQFLTRKICDG 1621
SC + ++I G
Sbjct: 304 LPKLSCGVKNRMHIRRKRIVGG 325
Score = 31.4 bits (71), Expect = 2.7
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 7/91 (7%)
Query: 1545 CPLGECLPKARVCNGY--MECSDGKCEMNSSFRCGNGECV-SIGSKC--NQLVDCADGSD 1599
+ + K + Y + C C+ RC G CV + +C N CA
Sbjct: 5 TSQEDLVEKKCLAKKYTHLSCDKVFCQPW--QRCIEGTCVCKLPYQCPKNGTAVCATNRR 62
Query: 1600 EKNCSCADFLKSQFLTRKICDGIIDCWDFSD 1630
C C
Sbjct: 63 SFPTYCQQKSLECLHPGTKFLNNGTCTAEGK 93
Score = 30.3 bits (68), Expect = 7.3
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 985 HLSVNRSECEMNSSFRCGNGECV-SIGSKC--NQLVDCADGSDEKNCSCADFLKSQFLTR 1041
HLS ++ C+ RC G CV + +C N CA C
Sbjct: 22 HLSCDKVFCQPW--QRCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPG 79
Query: 1042 KICDGIIDCWDFSD 1055
C
Sbjct: 80 TKFLNNGTCTAEGK 93
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 320 bits (822), Expect = 1e-99
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 41/283 (14%)
Query: 1260 ECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEG-----EFQCGATL 1314
+CG + +A+ +I+ G + +PW A + + +F CG +L
Sbjct: 13 DCGYQVEAD---------------KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSL 57
Query: 1315 ISDQWLLSAGHCFYRAQDDY----WVARLG---------TLRRGTKLPSPYEQLRPISKI 1361
I+++++++A HC RLG I +
Sbjct: 58 INNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEET 117
Query: 1362 ILHPQYVDA--GFINDISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFE 1417
I HP YVD +DI+++++ F+NY+RP+CLP PN + G TVVGWG+ E
Sbjct: 118 IQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-E 176
Query: 1418 IGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLM 1477
G+ + Q++ +P++ +C +T RV + CAG E +D+C GDSGGPL+
Sbjct: 177 TGQ-YSTIKQKLAVPVVHAEQCA-KTFGAAGVRVRSSQLCAGGE-KAKDSCGGDSGGPLL 233
Query: 1478 CQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNM 1520
+ + ++ L G+ S G C PG+YTKV Y W+ N+
Sbjct: 234 AERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 321 bits (825), Expect = 2e-99
Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 36/315 (11%)
Query: 1221 YYELSMNAINSSAATKSALL--FQKTKCSQKQVVAVNCSSLECGIRPQANNIWGSVNLTR 1278
YY++ A + + K QK C CG
Sbjct: 36 YYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLP-VCGKPVNPVE--------- 85
Query: 1279 SMRHSRIVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDY---- 1334
+ RI+GG A++G++PWQ G + G L+ D+W+L+A H Y + +
Sbjct: 86 --QRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNA 141
Query: 1335 -WVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAG---FINDISILKMKTP--FSNY 1388
LG PI ++ +HP Y F DI++L+++
Sbjct: 142 SLDVFLGHTNVEE---LMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 198
Query: 1389 VRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFL-P 1447
+ PICLP +T G + V G+G + E L+ V+LP+ + C
Sbjct: 199 LLPICLPDNDTFYDLGLMGYVSGFGVMEE---KIAHDLRFVRLPVANPQACENWLRGKNR 255
Query: 1448 LYRVTENMFCAGFERGGRDACLGDSGGPLMCQEPD-GRWSLMGVTSNGYGCARANRPGVY 1506
+ ++NMFCAG +DAC GDSGG ++P+ RW G+ S G GC+R G Y
Sbjct: 256 MDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFY 313
Query: 1507 TKVSNYIPWLYNNMA 1521
TKV NY+ W+ M
Sbjct: 314 TKVLNYVDWIKKEME 328
>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain,
MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 317 bits (814), Expect = 3e-99
Identities = 72/249 (28%), Positives = 112/249 (44%), Gaps = 25/249 (10%)
Query: 1285 IVGGGNARLGSWPWQAAL-YKEGEFQCGATLISDQWLLSAGHCFYRAQDD--YWVARLGT 1341
+VGG G+ PW +L ++G+ CG +L+ +QW+L+A CF + LGT
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 1342 LRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
L + + P Q P++K++ P + + +LK++ + V ICLP
Sbjct: 58 LFQNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLPPEWY 111
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFC 1457
+ GT C + GWG+ G L L +IS EC + RV E+ C
Sbjct: 112 VVPPGTKCEIAGWGETKGTG--NDTVLNVALLNVISNQECNI------KHRGRVRESEMC 163
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLY 1517
AC GD GGPL C W L G+ CAR+ P V+T+VS ++ W++
Sbjct: 164 TEGLLAPVGACEGDYGGPLACFT-HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIH 222
Query: 1518 NNMAASEYN 1526
M ++
Sbjct: 223 KVMRLGHHH 231
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 314 bits (807), Expect = 2e-98
Identities = 90/242 (37%), Positives = 130/242 (53%), Gaps = 24/242 (9%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG + P+Q +L G CG +LI+ QW++SA HC+ RLG
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGEDNI 55
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
+ EQ SK I+HP Y NDI ++K+K+ ++ V I LP + +
Sbjct: 56 --NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCAS 111
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFCAGF 1460
GT C + GWG G +PD L+ ++ PI+S + C+ Y ++T NMFCAG+
Sbjct: 112 AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS------AYPGQITSNMFCAGY 165
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNM 1520
GG+D+C GDSGGP++C L G+ S G GCA+ N+PGVYTKV NY+ W+ +
Sbjct: 166 LEGGKDSCQGDSGGPVVCS-----GKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Query: 1521 AA 1522
A+
Sbjct: 221 AS 222
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 314 bits (807), Expect = 3e-98
Identities = 79/240 (32%), Positives = 121/240 (50%), Gaps = 15/240 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+GG A + P+ A++ G CG L+++QW+LSA HC A D LG
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
P P ++L + + + HP +D+ +L++ VRP+ + +
Sbjct: 61 SQ--PEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVA 118
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
GTLC V GWG + GR PD+LQ V LP++ A C +RT +TE + CA
Sbjct: 119 PGTLCDVAGWGIVNHAGR-RPDSLQHVLLPVLDRATCNRRTHH--DGAITERLMCAE--S 173
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTKVSNYIPWLYNNMA 1521
RD+C GD+GGPL+C L GV ++G C +PG+YT+V++Y W+ + +A
Sbjct: 174 NRRDSCKGDAGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 313 bits (804), Expect = 5e-98
Identities = 80/243 (32%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+ G GS PWQ AL + CG L++++W+L+A HC + LG+
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN----EYTVHLGSDT- 55
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
L Q SK HP Y +ND+ ++K+ + S+ V+ + LP P
Sbjct: 56 ---LGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEP-- 110
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFCAGF 1460
GT CTV GWG FP L V + +IS +C K +Y + +M CAG
Sbjct: 111 PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTK------VYKDLLENSMLCAGI 164
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNG-YGCARANRPGVYTKVSNYIPWLYNN 1519
++AC GDSGGPL+C R +L G+ S G + C + N PGVYT+V + W+ +
Sbjct: 165 PDSKKNACNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219
Query: 1520 MAA 1522
M
Sbjct: 220 MKK 222
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic
intermediate, atomic resolution, hydrolase-hydrolase
inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB:
1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B*
1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E*
1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 313 bits (805), Expect = 6e-98
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 19/249 (7%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQ----CGATLISDQWLLSAGHCFYRAQDDYWVARLG 1340
+VGG A+ SWP Q +L CG TLI W+++A HC R + +G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELT--FRVVVG 58
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFI--NDISILKMKTP--FSNYVRPICLPH 1396
+ EQ + KI++HP + DI++L++ ++YV+ LP
Sbjct: 59 EHNLNQ--NNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPR 116
Query: 1397 PNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMF 1456
T L + + C + GWG G++ TLQ+ LP + A C + + V +M
Sbjct: 117 AGTILANNSPCYITGWGLTRTNGQL-AQTLQQAYLPTVDYAICSSSSYWG--STVKNSMV 173
Query: 1457 CAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTS--NGYGCARANRPGVYTKVSNYIP 1514
CAG + G R C GDSGGPL C +G++++ GVTS + GC +P V+T+VS YI
Sbjct: 174 CAGGD-GVRSGCQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYIS 231
Query: 1515 WLYNNMAAS 1523
W+ N +A++
Sbjct: 232 WINNVIASN 240
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 319 bits (820), Expect = 9e-98
Identities = 82/304 (26%), Positives = 130/304 (42%), Gaps = 33/304 (10%)
Query: 1244 TKCSQKQVVAVNCSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGN-ARLGSWPWQAAL 1302
S V CGIR + +I G N A G +PW A+
Sbjct: 101 PTPSPTPPVVPVLKPSFCGIRNERG------------LDFKITGQTNEAEYGEFPWMVAV 148
Query: 1303 YKEG--------EFQCGATLISDQWLLSAGHCF--YRAQDDYWVARLGTLRRGTKLPSPY 1352
K + CG +LI+ +L+ HC Y++ D R G T+
Sbjct: 149 LKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLP 208
Query: 1353 EQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVV 1410
Q R I ++I+H + +ND+++L + P ++ + ICLP + D T C
Sbjct: 209 YQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIF-DSTECFAS 267
Query: 1411 GWGQLFEIGR-VFPDTLQEVQLPIISTAECR---KRTLFLPLYRVTENMFCAGFERGGRD 1466
GWG+ R + + L+++QLP + +C+ + T + + + CAG E G+D
Sbjct: 268 GWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE-QGKD 326
Query: 1467 ACLGDSGGPLMCQEP--DGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAASE 1524
C GD G PL C +P R+ MG+ + G GC N PGVY V+++ W+ M A
Sbjct: 327 TCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAKG 386
Query: 1525 YNMM 1528
+
Sbjct: 387 LSTT 390
Score = 30.2 bits (68), Expect = 6.4
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 1013 CNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYECEWCSPGQYICP-N 1071
L C G+D+ C + + CDG+ + + G + N
Sbjct: 31 LTALPRCGTGADQGKKVCIVYHR--------CDGVTNTVTPEEVINTT--GEGIFDIREN 80
Query: 1072 SRVCIERTRLCDGIKDCPLGDDEKQCINLFPIETRS 1107
+ C +C G+ + + + P+ S
Sbjct: 81 ANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPS 116
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 313 bits (804), Expect = 9e-98
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 16/243 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+GG S P+ A+L + G CG L+ +W+L+A HC + + LG
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRL-VLGLHTL 59
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFI-NDISILKMKTP--FSNYVRPICLPHPNTPL 1401
I I HP+Y + ND+++L++ S +RP+ LP +
Sbjct: 60 -----DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVV 114
Query: 1402 TDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFE 1461
GT C++ GWG + GR L+E+ L ++ T C + ++ +M C +
Sbjct: 115 AAGTRCSMAGWGLTHQGGR-LSRVLRELDLQVLDTRMCNNSRFW--NGSLSPSMVCLAAD 171
Query: 1462 RGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTKVSNYIPWLYNNM 1520
+ C GDSGGPL+C L GV S C +P V T V+ Y+ W+
Sbjct: 172 SKDQAPCKGDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228
Query: 1521 AAS 1523
S
Sbjct: 229 GRS 231
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 319 bits (819), Expect = 1e-97
Identities = 82/294 (27%), Positives = 125/294 (42%), Gaps = 34/294 (11%)
Query: 1243 KTKCSQKQVVAVNCSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAAL 1302
K QK C CG + +I+GG A++G++PWQ
Sbjct: 128 IWKNEQKGEKIPRCLP-VCGKPVNPVE-----------QRQQIIGGQKAKMGNFPWQVFT 175
Query: 1303 YKEGEFQCGATLISDQWLLSAGHCFYRAQDDY-----WVARLGTLRRGTKLPSPYEQLRP 1357
G + G L+ D+W+L+A H Y + + LG P
Sbjct: 176 NIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEE---LMKLGNHP 230
Query: 1358 ISKIILHPQYVDAG---FINDISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGW 1412
I ++ +HP Y F DI++L+++ + PICLP +T G + V G+
Sbjct: 231 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 290
Query: 1413 GQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFL-PLYRVTENMFCAGFERGGRDACLGD 1471
G + E L+ V+LP+ + C + ++NMFCAG +DAC GD
Sbjct: 291 GVMEE---KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGD 347
Query: 1472 SGGPLMCQEPD-GRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAASE 1524
SGG ++P+ RW G+ S G GC+R G YTKV NY+ W+ M +
Sbjct: 348 SGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEMEEED 399
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 311 bits (800), Expect = 3e-97
Identities = 75/244 (30%), Positives = 110/244 (45%), Gaps = 16/244 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+GG S P+ L + + C LI+ W+L+A HC V LG
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN--KRSQV-ILGAHSI 57
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
P +Q+ + K +P Y A D+ +L++ + YV + LP +
Sbjct: 58 --TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVK 115
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
GT+C V GWG+ + DTL+EV++ II C R + + NM CAG R
Sbjct: 116 PGTMCQVAGWGRTHNSAS-WSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLR 174
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY--GCARANRPGVYTKVS-NYIPWLYNN 1519
GGRD+C GDSG PL+C+ GVTS G C PGVY +S ++ W+
Sbjct: 175 GGRDSCNGDSGSPLLCE-----GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229
Query: 1520 MAAS 1523
+ +
Sbjct: 230 IKGA 233
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 309 bits (794), Expect = 1e-96
Identities = 88/240 (36%), Positives = 121/240 (50%), Gaps = 21/240 (8%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG + S P Q +L G CG +L+++ W++SA HC+ RLG
Sbjct: 1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNI 55
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
EQ S++I HP Y NDI ++K+ P + YV+P+ LP P
Sbjct: 56 KV--TEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-- 111
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
GT+CTV GWG + LQ + +PI+S ++C +T MFCAG+
Sbjct: 112 AGTMCTVSGWGNTMS-STADSNKLQCLNIPILSYSDCNNSYP----GMITNAMFCAGYLE 166
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAA 1522
GG+D+C GDSGGP++C L GV S GYGCA PGVY KV + WL + MA+
Sbjct: 167 GGKDSCQGDSGGPVVCN-----GELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS 221
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 308 bits (791), Expect = 5e-96
Identities = 79/255 (30%), Positives = 114/255 (44%), Gaps = 31/255 (12%)
Query: 1283 SRIVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTL 1342
+ V S PW A+Y+ ++QCG L+ W+L+A HC+ + LG
Sbjct: 2 APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYND----KYQVWLGKN 57
Query: 1343 RRGTKLPSPYEQLRPISKIILHPQY-----------VDAGFINDISILKMKTP--FSNYV 1389
P +Q R +SK I HP + + + ND+ +L++ P ++ V
Sbjct: 58 NF--LEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVV 115
Query: 1390 RPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY 1449
+PI LP L G+ C GWG I +PD LQ V L ++ +C K
Sbjct: 116 KPITLPTEEPKL--GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKA---HE-M 169
Query: 1450 RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNG-YGCARANRPGVYTK 1508
+VT+ M CAG GG C DSGGPL+C L G+TS G C P VYTK
Sbjct: 170 KVTDAMLCAGEMDGGSYTCEHDSGGPLICD-----GILQGITSWGPEPCGEPTEPSVYTK 224
Query: 1509 VSNYIPWLYNNMAAS 1523
+ + W+ MA +
Sbjct: 225 LIKFSSWIRETMANN 239
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A
{Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 307 bits (790), Expect = 7e-96
Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 17/246 (6%)
Query: 1288 GGNARLGSWPWQAALYKEGEFQ----CGATLISDQWLLSAGHCFYRAQDDYWVARLGTLR 1343
G +A SW WQ +L E + CG +LI+ W+++AGHC ++ + LG
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRT--YQVVLGEYD 59
Query: 1344 RGTKLPSPYEQLRPISKIILHPQY--VDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
R S + +HP + NDI+++K+ + V+ LP
Sbjct: 60 RSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGD 119
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAG 1459
L + C + GWG+L+ G PD LQ+ LP + C + + V + M CAG
Sbjct: 120 ILPNEAPCYISGWGRLYT-GGPLPDKLQQALLPTVDYEHCSQWDWWG--ITVKKTMVCAG 176
Query: 1460 FERGGRDACLGDSGGPLMCQEPDGRWSLMGVTS--NGYGCARANRPGVYTKVSNYIPWLY 1517
R C GDSGGPL C DG W + GVTS + +GC +P V+T+VS +I W+
Sbjct: 177 G--DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWID 234
Query: 1518 NNMAAS 1523
+A++
Sbjct: 235 ETIASN 240
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 307 bits (789), Expect = 8e-96
Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 20/246 (8%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQ----CGATLISDQWLLSAGHCFYRAQDDYWVARLG 1340
+VGG A+ SWPWQ +L + CG +LI W+++A HC A+ W LG
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSART--WRVVLG 58
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFI--NDISILKMKTP--FSNYVRPICLPH 1396
T EQ+ ++ + +H + DI++L++ T ++ V+ LP
Sbjct: 59 EHNLNT--NEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPP 116
Query: 1397 PNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMF 1456
N L + C + GWG+ G D+L++ LP + A C + V M
Sbjct: 117 SNQILPNNNPCYITGWGKTST-GGPLSDSLKQAWLPSVDHATCSSSGWWG--STVKTTMV 173
Query: 1457 CAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTS--NGYGCARANRPGVYTKVSNYIP 1514
CAG G C GDSGGPL CQ +G + + GVTS + GC + +P V+T+VS YI
Sbjct: 174 CAG--GGANSGCNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYIS 230
Query: 1515 WLYNNM 1520
W+ M
Sbjct: 231 WMNGIM 236
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 305 bits (784), Expect = 4e-95
Identities = 80/255 (31%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
+VGG N S PWQ A+Y + E CG L+ W+L+A HC+ D + LG +
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV----DQYEVWLGKNKL 56
Query: 1345 GTKLPSPYEQLRPISKIILHPQY-----------VDAGFINDISILKMKTP--FSNYVRP 1391
P Q R +SK HP + A F +D+ +L++ P ++ V+P
Sbjct: 57 --FQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKP 114
Query: 1392 ICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY-- 1449
I LP G+ C GWG + PD LQ V + ++ C K +Y
Sbjct: 115 IALPTKEPK--PGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAK------VYLQ 166
Query: 1450 RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNG-YGCARANRPGVYTK 1508
+VT+ M CAG GG+D C DSGGPL+C L G TS G C + P +YT
Sbjct: 167 KVTDVMLCAGEMGGGKDTCRDDSGGPLICD-----GILQGTTSYGPVPCGKPGVPAIYTN 221
Query: 1509 VSNYIPWLYNNMAAS 1523
+ + W+ + M +
Sbjct: 222 LIKFNSWIKDTMMKN 236
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 304 bits (781), Expect = 1e-94
Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 20/244 (8%)
Query: 1285 IVGGGNARLGSWPWQAALY--KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTL 1342
I+GG + + ALY + CG TLI+ +W+L+A HC + + +LG
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRK----NFRIKLGMH 56
Query: 1343 RRGTKLPSPYEQLR-PISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
+ K+P+ EQ R P K + DI ++++ +P S ++ P LP
Sbjct: 57 SK--KVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPP 114
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAG 1459
+ G++C ++GWG++ +PD V + ++ CR L T CAG
Sbjct: 115 SV--GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFEL-PATSRTLCAG 171
Query: 1460 FERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTKVSNYIPWLYN 1518
GG+D C GDSGGPL+C G+ S G CA+ ++P YTKV +++ W+ N
Sbjct: 172 ILEGGKDTCKGDSGGPLIC-----NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIEN 226
Query: 1519 NMAA 1522
+A
Sbjct: 227 IIAG 230
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 303 bits (779), Expect = 2e-94
Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 20/242 (8%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
++GG + A + F C TLI+++W+L+A HC + + +LG +
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD----NTNFQMKLGVHSK 56
Query: 1345 GTKLPSPYEQLRPISKIILHP-QYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
K+ + EQ R + + P + D DI ++K+ + S ++ P+ LP +
Sbjct: 57 --KVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSV 114
Query: 1402 TDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFE 1461
G++C ++GWG + I +PD + ++ A C+ P CAG
Sbjct: 115 --GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAG---YPELLTEYRTLCAGIL 169
Query: 1462 RGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNG-YGCARANRPGVYTKVSNYIPWLYNNM 1520
GG+D C GDSGGPL+C G+ S G + C + +PGVYTKV +Y W+ + +
Sbjct: 170 EGGKDTCGGDSGGPLICN-----GQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224
Query: 1521 AA 1522
A
Sbjct: 225 AG 226
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi
or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 307 bits (787), Expect = 4e-94
Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 41/281 (14%)
Query: 1261 CGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWL 1320
CG+ + RI+GG +A + ++PWQ G LI++ W+
Sbjct: 70 CGVPREPFE-----------EKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWV 115
Query: 1321 LSAGHCFYRAQDDYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQY-------VDAGFI 1373
L+A H ++ +++ ++ + +HP + F
Sbjct: 116 LTAAHVVEGNREPTMYVGSTSVQ---TSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFD 172
Query: 1374 NDISILKMKTP--FSNYVRPICLPHPNTP--LTDGTLCTVVGWGQLFEIGRVFPDTLQEV 1429
NDI+++++K P V PICLP ++ L DG L + GWG+ + R L+
Sbjct: 173 NDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK--RDRAVRLKAA 230
Query: 1430 QLPIISTAECRK-----RTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEPD-- 1482
+LP+ +C++ T Y T NM CAG E G D+C GDSGG Q+P+
Sbjct: 231 RLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGE-KGMDSCKGDSGGAFAVQDPNDK 289
Query: 1483 GRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAAS 1523
++ G+ S G C G+YT+V NY+ W+ M +
Sbjct: 290 TKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTMQEN 327
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 300 bits (772), Expect = 1e-93
Identities = 84/245 (34%), Positives = 121/245 (49%), Gaps = 25/245 (10%)
Query: 1285 IVGGGNARLGSWPWQAALY-KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLR 1343
I+ G + + + PWQAAL + + CGA L+ QWLL+A HC + RLG
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCR----KKVFRVRLGHYS 56
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
+ +Q+ K I HP Y G ND+ ++K+ + VRPI + +
Sbjct: 57 LS-PVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS--SHCP 113
Query: 1402 TDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFCAG 1459
+ GT C V GWG FP LQ + + ++S C Y ++ + MFCAG
Sbjct: 114 SAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCED------AYPRQIDDTMFCAG 167
Query: 1460 FERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNG-YGCARANRPGVYTKVSNYIPWLYN 1518
+ GRD+C GDSGGP++C SL G+ S G Y CAR NRPGVYT + + W+
Sbjct: 168 DK-AGRDSCQGDSGGPVVCN-----GSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQE 221
Query: 1519 NMAAS 1523
+ A+
Sbjct: 222 TIQAN 226
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 299 bits (768), Expect = 5e-93
Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 16/242 (6%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+GG + + PW + + + CG ++++ ++++A C + G+ R
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNY-VRPICLPHPNTPL 1401
T + ++K I +Y N+ ++++ + P + + I LP
Sbjct: 61 TT------KGTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDP 114
Query: 1402 TDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKR-TLFLPLYRVTENMFCAGF 1460
T V GWG + L E ++ C ++ + + +FCAG
Sbjct: 115 EPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGG 174
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNM 1520
E GD+G P + +L+GV S P V+ +V Y+ + + +
Sbjct: 175 EYDETYIGYGDAGDPAVQN-----GTLVGVASYISSMPS-EFPSVFLRVGYYVLDIKDII 228
Query: 1521 AA 1522
+
Sbjct: 229 SG 230
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A
{Homo sapiens}
Length = 238
Score = 298 bits (766), Expect = 1e-92
Identities = 87/256 (33%), Positives = 123/256 (48%), Gaps = 36/256 (14%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG S PWQAALY FQCG L+ QW+L+A HC D+Y + LG
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI---SDNYQL-WLGRHNL 56
Query: 1345 GTKLPSPYEQLRPISKIILHPQY-----------VDAGFINDISILKMKTP---FSNYVR 1390
Q +S+ HP + D + +D+ +L++ P ++ V+
Sbjct: 57 --FDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVK 114
Query: 1391 PICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY- 1449
+ LP + G+ C GWG + FPD LQ V L I+ EC+K +
Sbjct: 115 VVELPTEEPEV--GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKA------HV 166
Query: 1450 -RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY-GCARANRPGVYT 1507
+VT+ M C G GG+D C+GDSGGPLMC L GVTS GY C N+P V
Sbjct: 167 QKVTDFMLCVGHLEGGKDTCVGDSGGPLMCD-----GVLQGVTSWGYVPCGTPNKPSVAV 221
Query: 1508 KVSNYIPWLYNNMAAS 1523
+V +Y+ W+ + +A +
Sbjct: 222 RVLSYVKWIEDTIAEN 237
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine,
protease, brain serine protease, myelencephalon specific
protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2
PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 297 bits (763), Expect = 2e-92
Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 26/243 (10%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
+V GG S P+QAALY G CG LI W+L+A HC + + V LG
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK---KPNLQV-FLGKHNL 56
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
+ ++ + + ++HP Y A DI +L++ P S ++P+ L
Sbjct: 57 --RQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPL--ERDCSA 112
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFCAGF 1460
+ T C ++GWG+ + FPDT+Q + ++S EC Y ++T+NM CAG
Sbjct: 113 NTTSCHILGWGKTAD--GDFPDTIQCAYIHLVSREECEH------AYPGQITQNMLCAGD 164
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNG-YGCARANRPGVYTKVSNYIPWLYNN 1519
E+ G+D+C GDSGGPL+C L G+ S G C +PGVYT V Y W+
Sbjct: 165 EKYGKDSCQGDSGGPLVCG-----DHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219
Query: 1520 MAA 1522
+ A
Sbjct: 220 IQA 222
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 297 bits (763), Expect = 2e-92
Identities = 82/243 (33%), Positives = 113/243 (46%), Gaps = 25/243 (10%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+ G + S PWQAAL E E C L+ QW+LSA HCF Q+ Y + LG
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF---QNSYTI-GLGLHSL 56
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
P Q+ S + HP+Y ND+ ++K+ S+ +R I + + T
Sbjct: 57 EAD-QEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISI--ASQCPT 113
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFCAGF 1460
G C V GWG L GR P LQ V + ++S C K Y +MFCAG
Sbjct: 114 AGNSCLVSGWGLL-ANGR-MPTVLQCVNVSVVSEEVCSKL------YDPLYHPSMFCAGG 165
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTKVSNYIPWLYNN 1519
+ +D+C GDSGGPL+C L G+ S G C + PGVYT + + W+
Sbjct: 166 GQDQKDSCNGDSGGPLICN-----GYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 220
Query: 1520 MAA 1522
+ A
Sbjct: 221 VQA 223
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 297 bits (763), Expect = 3e-92
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 21/242 (8%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
++GG + + A +Y CG TLI+ +W+L+A HC LG
Sbjct: 1 VIGGDECNINEHRFLALVYA-NGSLCGGTLINQEWVLTARHCDRG----NMRIYLGMHNL 55
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
L + P K D + DI ++++ P S ++ P+ LP + P +
Sbjct: 56 -KVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP--SNPPS 112
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
G++C ++GWG + PD + I+ A C+ + CAG
Sbjct: 113 VGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAA-----YKGLAATTLCAGILE 167
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY-GCARANRPGVYTKVSNYIPWLYNNMA 1521
GG+D C GDSGGPL+C G+ S G CA+ +PG+YTKV +Y W+ + ++
Sbjct: 168 GGKDTCKGDSGGPLICN-----GQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222
Query: 1522 AS 1523
+
Sbjct: 223 GN 224
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A*
1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 297 bits (762), Expect = 3e-92
Identities = 72/241 (29%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 1285 IVGGGNARLGSWPWQAALY---KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGT 1341
I+GG A+ S P+ A L ++ +CG LI D ++L+A HC+ LG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW----GSSINVTLGA 56
Query: 1342 LRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
K P +Q P+ + I HP Y F NDI +L+++ + V+P+ LP
Sbjct: 57 HNI--KEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKA 114
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAG 1459
+ G C+V GWGQ +G+ TLQEV++ + +C L Y + C G
Sbjct: 115 QVKPGQTCSVAGWGQTAPLGK-HSHTLQEVKMTVQEDRKCESD---LRHYYDSTIELCVG 170
Query: 1460 FERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNN 1519
+ + GDSGGPL+C G+ S G P TKVS+++ W+
Sbjct: 171 DPEIKKTSFKGDSGGPLVCN-----KVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKT 223
Query: 1520 M 1520
M
Sbjct: 224 M 224
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 297 bits (762), Expect = 4e-92
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 24/244 (9%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGE--FQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTL 1342
+VGG + P+ ALY C LI+ +W+L+A HC R + + +LG
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRR---NIRI-KLGMH 56
Query: 1343 RRGTKLPSPYEQLR-PISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
+ + + EQ+R P K G DI +++++ P +S ++ P+ LP +
Sbjct: 57 SK--NIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSR 114
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAG 1459
+ G+ C ++GWG++ +PD + I+ C P CAG
Sbjct: 115 GV--GSRCRIMGWGKISTTT--YPDVPHCTNIFIVKHKWCEPL---YPWVPADSRTLCAG 167
Query: 1460 FERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY-GCARANRPGVYTKVSNYIPWLYN 1518
+GGRD C GDSGGPL+C + G+ + G C + +P VYTKV +Y W+ +
Sbjct: 168 ILKGGRDTCHGDSGGPLICN-----GEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQS 222
Query: 1519 NMAA 1522
+A
Sbjct: 223 IIAG 226
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding;
HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB:
1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 295 bits (759), Expect = 7e-92
Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 23/239 (9%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG AR +P+ A++ +G CG LI +++++A CF LG
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
+ + + Y +ND+ +L++ ++ V + LP N +
Sbjct: 61 --RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVE 118
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
GT C V GWG GR + V + + +CR N C G
Sbjct: 119 AGTRCQVAGWGSQRSGGR-LSRFPRFVNVTVTPEDQCR------------PNNVCTGVLT 165
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
C GD G PL+C+ GV S G P +T+V+ + W+ +
Sbjct: 166 RRGGICNGDGGTPLVCE-----GLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDGVLN 218
>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases,
antibodies, prostate cancer, glycoprotein, hydrolase,
polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P*
2zcl_P* 3qum_P*
Length = 237
Score = 295 bits (757), Expect = 2e-91
Identities = 81/254 (31%), Positives = 113/254 (44%), Gaps = 35/254 (13%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG S PWQ + G CG L+ QW+L+A HC + V LG
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI----RNKSVILLGRHSL 56
Query: 1345 GTKLPSPYEQLRPISKIILHPQY-----------VDAGFINDISILKMKTP--FSNYVRP 1391
P Q+ +S HP Y +D+ +L++ P ++ V+
Sbjct: 57 --FHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKV 114
Query: 1392 ICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY-- 1449
+ LP L GT C GWG + + P LQ V L +IS C + ++
Sbjct: 115 MDLPTQEPAL--GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQ------VHPQ 166
Query: 1450 RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY-GCARANRPGVYTK 1508
+VT+ M CAG GG+ C GDSGGPL+C L G+TS G CA RP +YTK
Sbjct: 167 KVTKFMLCAGRWTGGKSTCSGDSGGPLVCN-----GVLQGITSWGSEPCALPERPSLYTK 221
Query: 1509 VSNYIPWLYNNMAA 1522
V +Y W+ + + A
Sbjct: 222 VVHYRKWIKDTIVA 235
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 294 bits (755), Expect = 2e-91
Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 28/244 (11%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+ G S PWQAAL++ CG L+ D+W+L+A HC + Y V RLG
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCK---KQKYSV-RLGDHSL 56
Query: 1345 GTKLPSPYEQLRPISKIILHPQY---VDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
+ EQ +++ I HP Y +DI +++++ + V+P+ L N
Sbjct: 57 --QSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL--ANL 112
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFC 1457
G C + GWG + FP+TL ++ I S +C + Y ++TE M C
Sbjct: 113 CPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA------YPGKITEGMVC 166
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTKVSNYIPWL 1516
AG G D C GDSGGPL+C L G+TS G C + +PGVYTK+ Y W+
Sbjct: 167 AGSS-NGADTCQGDSGGPLVCD-----GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWI 220
Query: 1517 YNNM 1520
M
Sbjct: 221 KKTM 224
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A
{Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 294 bits (755), Expect = 2e-91
Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 22/240 (9%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTLR 1343
IVGG +A +G +P+Q +L G +CGA+++ + +L+A HC + + +GT
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
S + + +++ Y D ND++++ + P F++ V+PI L + L
Sbjct: 61 L-----SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDL 115
Query: 1402 TDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFE 1461
+ CT+ GWG G P+ LQE++L + +C + +RV ++ C +
Sbjct: 116 -ESNPCTLTGWGSTRLGGNT-PNALQEIELIVHPQKQCERDQ-----WRVIDSHICTLTK 168
Query: 1462 RGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
G AC GDSGGPL+ + +G+ S G CA P VYT+VS+++ W+ N+
Sbjct: 169 -RGEGACHGDSGGPLVAN-----GAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLK 221
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 295 bits (757), Expect = 8e-91
Identities = 57/287 (19%), Positives = 94/287 (32%), Gaps = 37/287 (12%)
Query: 1246 CSQKQVVAVNCSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAAL-YK 1304
CS Q + +C Q L PWQ L
Sbjct: 26 CSCAQGYRLGEDHKQCVPHDQCA------------CGVLTSEKRAPDLQDLPWQVKLTNS 73
Query: 1305 EGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRRGTKLPSPYEQLRPISKIILH 1364
EG+ CG +I + ++L+ C ++ T++ S + I+ + +H
Sbjct: 74 EGKDFCGGVIIRENFVLTTAKCSLLHRNI-------TVKTYFNRTSQDPLMIKITHVHVH 126
Query: 1365 PQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTP---LTDGTLCTVVGWGQLFEIG 1419
+Y ND+S+L+++ P P+C P + L T + GW + G
Sbjct: 127 MRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN---G 183
Query: 1420 RVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQ 1479
++L + ++ EC + VT +C A G +
Sbjct: 184 TDLGNSLTTRPVTLVEGEECGQVLN----VTVTTRTYCER---SSVAAMHWMDGSVVTR- 235
Query: 1480 EPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAASEYN 1526
E G W L GV + TKVS Y W M A ++
Sbjct: 236 EHRGSWFLTGVLG-SQPVGGQAHMVLVTKVSRYSLWFKQIMNAHHHH 281
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 291 bits (747), Expect = 3e-90
Identities = 78/255 (30%), Positives = 111/255 (43%), Gaps = 37/255 (14%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG S PWQ A+ E+ CG LI W+++A HC+ ++Y V LG
Sbjct: 1 IVGGYKCEKNSQPWQVAVI--NEYLCGGVLIDPSWVITAAHCY---SNNYQV-LLGRNNL 54
Query: 1345 GTKLPSPYEQLRPISKIILHPQY-----------VDAGFINDISILKMKTP--FSNYVRP 1391
P+ Q R + + HP Y ND+ +L + P + V+
Sbjct: 55 --FKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKV 112
Query: 1392 ICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY-- 1449
I LP + G+ C GWG V LQ V + ++S +C + Y
Sbjct: 113 IDLPTKEPKV--GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIE------TYKD 164
Query: 1450 RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTK 1508
VT+ M CAG GG+D C GDSGGPL+C L G+TS G CA+ P +Y K
Sbjct: 165 NVTDVMLCAGEMEGGKDTCAGDSGGPLICD-----GVLQGITSGGATPCAKPKTPAIYAK 219
Query: 1509 VSNYIPWLYNNMAAS 1523
+ + W+ M +
Sbjct: 220 LIKFTSWIKKVMKEN 234
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A
{Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 291 bits (746), Expect = 5e-90
Identities = 77/255 (30%), Positives = 111/255 (43%), Gaps = 35/255 (13%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
I+GG S PWQ A+Y +G FQCG L+ QW+L+A HC DDY + LG
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM---SDDYQI-WLGRHNL 56
Query: 1345 GTKLPSPYEQLRPISKIILHPQY-----------VDAGFINDISILKMKTP--FSNYVRP 1391
Q +S L PQ+ +D+ +L++ P ++ V+
Sbjct: 57 --SKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKI 114
Query: 1392 ICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY-- 1449
+ LP L G+ C GWG + TLQ V+L + S +C + Y
Sbjct: 115 LDLPTQEPKL--GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARA------YPE 166
Query: 1450 RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTK 1508
++TE + CA CLGDSGG L+C G+TS GY CA N V+TK
Sbjct: 167 KMTEFVLCATHRDDSGSICLGDSGGALICD-----GVFQGITSWGYSECADFNDNFVFTK 221
Query: 1509 VSNYIPWLYNNMAAS 1523
V + W+ + +
Sbjct: 222 VMPHKKWIKETIEKN 236
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate
immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 296 bits (760), Expect = 1e-89
Identities = 86/364 (23%), Positives = 142/364 (39%), Gaps = 53/364 (14%)
Query: 1197 CKSMTFRDLNEIEAVADPSTDDSIYYELSMNAINSSAATKSALLFQKTKCSQKQVVAVNC 1256
C+++ L E + D Y + + + K +
Sbjct: 48 CRTI-EERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSANIQHNSKVMSLFKD 106
Query: 1257 SSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAAL----YKEGEFQCGA 1312
+ +CG R+ G +L S PW A L + E F CG
Sbjct: 107 ENFDCGNFLS----------------QRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGG 150
Query: 1313 TLISDQWLLSAGHCFYRAQDDYWVARLG----------TLRRGTKLPSPYEQLRPISKII 1362
+IS++++L+A HC + Q+D + RLG + K +P I K +
Sbjct: 151 AMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHL 210
Query: 1363 LHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPN---TPLTDGTLCTVVGWGQLFE 1417
+H +Y ++DI++LK+ F +++PICLP + + V GWG E
Sbjct: 211 IHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-E 269
Query: 1418 IGRVFPDTLQEVQLPIISTAECRKRTLFLPLYR--VTENMFCAGFERGGRDACLGDSGGP 1475
G D L + +P+ + C + YR V + C G +D+C GDSGGP
Sbjct: 270 NGS-SSDVLLQANVPLQPRSACSQA------YRRAVPLSQLCVGGG-DLQDSCKGDSGGP 321
Query: 1476 LMCQ-----EPDGRWSLMGVTSNG-YGCARANRPGVYTKVSNYIPWLYNNMAASEYNMMR 1529
L E + G+ S G C + + PG+YT V Y+ W+ + MA++ R
Sbjct: 322 LQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGLLESR 381
Query: 1530 NETQ 1533
+
Sbjct: 382 GPFE 385
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*
Length = 224
Score = 289 bits (741), Expect = 2e-89
Identities = 74/245 (30%), Positives = 111/245 (45%), Gaps = 28/245 (11%)
Query: 1285 IVGGGNARLGSWPWQAALY---KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGT 1341
I+GG +R S P+ A L G+ +CG L+ + ++L+A HC+ + V LG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW---GSNINV-TLGA 56
Query: 1342 LRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
+ +Q + I HPQY NDI +L++ + V P+ LP
Sbjct: 57 HNI--QRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQE 114
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFC 1457
L GTLCTV GWG++ DTL+EVQL + +C + + C
Sbjct: 115 GLRPGTLCTVAGWGRVSMRR--GTDTLREVQLRVQRDRQCLRI------FGSYDPRRQIC 166
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLY 1517
G R + A GDSGGPL+C G+ S G P V+T+VS+++PW+
Sbjct: 167 VGDRRERKAAFKGDSGGPLLCN-----NVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIR 219
Query: 1518 NNMAA 1522
M +
Sbjct: 220 TTMRS 224
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 288 bits (739), Expect = 4e-89
Identities = 71/242 (29%), Positives = 108/242 (44%), Gaps = 25/242 (10%)
Query: 1285 IVGGGNARLGSWPWQAALY----KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLG 1340
I+GG + S P+ A L K CG LIS Q++L+A HC R + V LG
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGR---EITV-ILG 56
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPN 1398
+ +Q + K I+H Y ++DI +LK++ + V + LP P+
Sbjct: 57 AHDV--RKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPS 114
Query: 1399 TPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCA 1458
+ G +C GWG+ TL+EV+L I+ C Y + C
Sbjct: 115 DFIHPGAMCWAAGWGKTGVRDP-TSYTLREVELRIMDEKACVDYR-----YYEYKFQVCV 168
Query: 1459 GFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
G R A +GDSGGPL+C G+ S G+ A+ P ++T+VS Y+PW+
Sbjct: 169 GSPTTLRAAFMGDSGGPLLCA-----GVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINA 221
Query: 1519 NM 1520
+
Sbjct: 222 VI 223
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 287 bits (737), Expect = 5e-89
Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 25/239 (10%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG AR +WP+ +L G CGATLI+ +++SA HC LG
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
P Q+ + +I Y +NDI IL++ + V+ LP L
Sbjct: 61 --SRREPTRQVFAVQRIF-ENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLG 117
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFER 1462
+G C +GWG L LQE+ + +++ + CR+ + C
Sbjct: 118 NGVQCLAMGWGLLGRNRG-IASVLQELNVTVVT-SLCRR------------SNVCTLVRG 163
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY-GCARANRPGVYTKVSNYIPWLYNNM 1520
C GDSG PL+C + G+ S GCA P + V+ ++ W+ + +
Sbjct: 164 RQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex,
blood coagulation, CL PAIR of basic residues, disulfide
bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Length = 317
Score = 291 bits (747), Expect = 6e-89
Identities = 49/250 (19%), Positives = 81/250 (32%), Gaps = 25/250 (10%)
Query: 1277 TRSMRHSRIVGGGNARLGSWPWQAAL-YKEGEFQCGATLISDQWLLSAGHCFYRAQDDYW 1335
+ L PWQ L EG+ CG +I + ++L+ C ++
Sbjct: 86 DQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITV 145
Query: 1336 VARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPIC 1393
S + I+ + +H +Y ND+S+L+++ P P+C
Sbjct: 146 KTYFNRT-------SQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVC 198
Query: 1394 LP---HPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYR 1450
P L T + GW + G ++L + ++ EC +
Sbjct: 199 TPEKDFAEHLLIPRTRGLLSGWARN---GTDLGNSLTTRPVTLVEGEECGQVLN----VT 251
Query: 1451 VTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVS 1510
VT +C A G + + G W L GV + TKVS
Sbjct: 252 VTTRTYCER---SSVAAMHWMDGSVVTREH-RGSWFLTGVLG-SQPVGGQAHMVLVTKVS 306
Query: 1511 NYIPWLYNNM 1520
Y W M
Sbjct: 307 RYSLWFKQIM 316
Score = 47.8 bits (114), Expect = 2e-05
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 1001 CGNGECV-SIGS-KCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYE 1058
NG C SI C C+ G + NC A K++ + C + Y
Sbjct: 14 LHNGSCQDSIWGYTC----TCSPGYEGSNCELA---KNECHPERTDGCQHFCLPGQESYT 66
Query: 1059 CEWCSPGQYICPNSRVCIERTRLCDGIKDC 1088
C C+ G + + + C+ + G+
Sbjct: 67 C-SCAQGYRLGEDHKQCVPHDQCACGVLTS 95
Score = 41.2 bits (97), Expect = 0.002
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 1563 CSDGKCEMNSSFRCGNGECV-SIGS-KCNQLVDCADGSDEKNCSCADFLKSQFLTRKICD 1620
C C NG C SI C C+ G + NC A K++ +
Sbjct: 8 CISQPC-------LHNGSCQDSIWGYTC----TCSPGYEGSNCELA---KNECHPERTDG 53
Query: 1621 GIIDCWDFSDEYEC 1634
C + Y C
Sbjct: 54 CQHFCLPGQESYTC 67
Score = 33.1 bits (76), Expect = 0.76
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 18/93 (19%)
Query: 1540 CNGHRCPLGECLPKARVCNGYM-ECSDGKCEMNSSFRCGNGECVSIGSK-CNQLVDCADG 1597
+ G C GY CS G N EC + C C G
Sbjct: 14 LHN-----GSCQDS---IWGYTCTCSPGYEGSNCE--LAKNECHPERTDGCQH--FCLPG 61
Query: 1598 SDEKNCSCADFLKSQFLTRKICDGIIDCWDFSD 1630
+ CSCA + + + +
Sbjct: 62 QESYTCSCA----QGYRLGEDHKQCVPHDQCAC 90
Score = 30.1 bits (68), Expect = 6.2
Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 1044 CDGIIDCWDFSDEYECEWCSPG----QYICPNSRVCIERTRLCDGIKDCPLGDDEKQCI 1098
C C D Y C CSPG + ERT C C G + C
Sbjct: 13 CLHNGSCQDSIWGYTC-TCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCS 68
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 287 bits (738), Expect = 6e-89
Identities = 70/243 (28%), Positives = 107/243 (44%), Gaps = 22/243 (9%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRR 1344
IVGG A SWP QAAL+ + + CG +LIS +W+L+A HC A + LG
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGA--GFVDVVLGAHNI 58
Query: 1345 GTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLT 1402
+ + +H Y NDI+++++ P + + + LP +
Sbjct: 59 RE--DEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVG-- 114
Query: 1403 DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY-RVTENMFCAGFE 1461
GT+ T GWG + D L++V +PI+S A+C Y VT+ C
Sbjct: 115 VGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAV------YGIVTDGNICIDST 168
Query: 1462 RGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CARANRPGVYTKVSNYIPWLYNNM 1520
GG+ C GDSGGPL G+TS G A P +T+V+ ++ W+
Sbjct: 169 -GGKGTCNGDSGGPLNYN-----GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222
Query: 1521 AAS 1523
+
Sbjct: 223 GIT 225
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen;
2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 287 bits (736), Expect = 9e-89
Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 23/242 (9%)
Query: 1285 IVGGGNARLGSWPWQAALY----KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLG 1340
I+GG S P+ A + CG L+ D+++L+A HC V LG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK---GRSMTV-TLG 56
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPN 1398
K +Q+ P++K I HP Y NDI +LK+ + VRP+ LP N
Sbjct: 57 AHNI--KAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRN 114
Query: 1399 TPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCA 1458
+ G C V GWG++ G FP TL EV+L + C + N C
Sbjct: 115 AHVKPGDECYVAGWGKVTPDGE-FPKTLHEVKLTVQKDQVCESQ---FQSSYNRANEICV 170
Query: 1459 GFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
G + + DSGGPL+C+ + G+ S YG + P V+T+V +++ W+
Sbjct: 171 GDSKIKGASFEEDSGGPLVCK-----RAAAGIVS--YGQTDGSAPQVFTRVLSFVSWIKK 223
Query: 1519 NM 1520
M
Sbjct: 224 TM 225
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 285 bits (732), Expect = 3e-88
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 27/243 (11%)
Query: 1285 IVGGGNARLGSWPWQAALY---KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGT 1341
I+GG A+ S P+ A L CG L+ + ++L+A HC V LG
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL---GSSINV-TLGA 56
Query: 1342 LRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
+Q+ P+ + I HP Y D NDI +LK+ ++ V PI LP
Sbjct: 57 HNI--MERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLA 114
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFC 1457
+ G +C+V GWG+L D LQEV L + S +C R + + C
Sbjct: 115 EVKPGMMCSVAGWGRLGVNMP-STDKLQEVDLEVQSEEKCIAR------FKNYIPFTQIC 167
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLY 1517
AG +++ GDSGGPL+C G+ S G P VYT++S+++ W++
Sbjct: 168 AGDPSKRKNSFSGDSGGPLVCN-----GVAQGIVSYGRND--GTTPDVYTRISSFLSWIH 220
Query: 1518 NNM 1520
+ M
Sbjct: 221 STM 223
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 282 bits (725), Expect = 3e-87
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 25/245 (10%)
Query: 1285 IVGGGNARLGSWPWQAAL----YKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLG 1340
I+GG + S P+ A L CG LI ++L+A HC R V LG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR---SITV-TLG 56
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPN 1398
Q + K HP+Y + +DI +LK+K + V + P
Sbjct: 57 AHNI--TEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQF 114
Query: 1399 TPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCA 1458
+ G +C V GWG+ + DTLQEV+L ++ C C
Sbjct: 115 NFVPPGRMCRVAGWGRTGVLKP-GSDTLQEVKLRLMDPQACSHFR-----DFDHNLQLCV 168
Query: 1459 GFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYN 1518
G R + A GDSGGPL+C G+ S G A+ P V+T++S+Y PW+
Sbjct: 169 GNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQ 221
Query: 1519 NMAAS 1523
+ A+
Sbjct: 222 ILQAN 226
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 281 bits (721), Expect = 1e-86
Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 22/241 (9%)
Query: 1287 GGGNARLGSWPWQAAL---YKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLR 1343
GG + PW A+ E CG ++S ++L+A HC + + + V + +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYES-- 59
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNY-VRPICLPHPNTP 1400
T L + P + Y NDI+IL++ P +P LP
Sbjct: 60 --TNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFR 117
Query: 1401 LTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGF 1460
G+ V G+G + L+ QL ++ ECR + ++ +FCA
Sbjct: 118 PKTGSDVLVSGYGDGQTMDPK-DHDLKSAQLTVVDLDECRTK---YGPIFLSLQVFCAQ- 172
Query: 1461 ERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNM 1520
+ G GD+G P + Q +L+GV + P V+TKV +Y+ W+ + +
Sbjct: 173 -KVGVSLESGDAGDPTVQQ-----DTLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDII 225
Query: 1521 A 1521
Sbjct: 226 K 226
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen,
hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens}
SCOP: b.47.1.2
Length = 221
Score = 279 bits (715), Expect = 6e-86
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 1285 IVGGGNARLGSWPWQAALY---KEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGT 1341
IVGG A+ S P+ A+L G CG TLI ++L+A HC LG
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 1342 LRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNT 1399
+ P +Q ++++ L+ Y +NDI ++++ +P S V + LP +
Sbjct: 61 HNV--RTQEPTQQHFSVAQVFLNN-YDAENKLNDILLIQLSSPANLSASVATVQLPQQDQ 117
Query: 1400 PLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAG 1459
P+ GT C +GWG++ LQE+ + +++ + + C
Sbjct: 118 PVPHGTQCLAMGWGRVGA-HDPPAQVLQELNVTVVT-------------FFCRPHNICTF 163
Query: 1460 FERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNG-YGCARANRPGVYTKVSNYIPWLYN 1518
R C GDSGGPL+C + G+ S +GCA P +T+V+ Y+ W+ +
Sbjct: 164 VPRRKAGICFGDSGGPLICD-----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRS 218
Query: 1519 NM 1520
+
Sbjct: 219 TL 220
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 278 bits (713), Expect = 4e-79
Identities = 95/270 (35%), Positives = 134/270 (49%), Gaps = 19/270 (7%)
Query: 1260 ECGIRPQANNIW--GSVNLTRSMRHSRIVGGGNARLGSWPWQAALY-KEGEFQCGATLIS 1316
C + A + G + R+VGG A SWPWQ +L + G CG TLIS
Sbjct: 535 YCDVPQCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLIS 594
Query: 1317 DQWLLSAGHCFYRAQD-DYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFIND 1375
+W+L+A HC ++ + LG + P+ Q +S++ L P D
Sbjct: 595 PEWVLTAAHCLEKSPRPSSYKVILGAHQEVN--LEPHVQEIEVSRLFLEPTR------KD 646
Query: 1376 ISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPI 1433
I++LK+ +P ++ V P CLP PN + D T C + GWG+ L+E QLP+
Sbjct: 647 IALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTF--GAGLLKEAQLPV 704
Query: 1434 ISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSN 1493
I C + RV CAG GG D+C GDSGGPL+C E ++ L GVTS
Sbjct: 705 IENKVCNRY--EFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFE-KDKYILQGVTSW 761
Query: 1494 GYGCARANRPGVYTKVSNYIPWLYNNMAAS 1523
G GCAR N+PGVY +VS ++ W+ M +
Sbjct: 762 GLGCARPNKPGVYVRVSRFVTWIEGVMRNN 791
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A
{Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 254 bits (650), Expect = 4e-77
Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 1285 IVGGGNARLGSWPWQAALYKE----GEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLG 1340
I+ G A G +P+QA L CG +LI ++W+L+A HC + A V LG
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDA--VSVVVYLG 58
Query: 1341 TLRRGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKT-PFSNYVRPICLPHPNT 1399
+ + E + +II H + ++ND++++K+ +++ ++PI LP
Sbjct: 59 SAVQ-----YEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEE 113
Query: 1400 PLT--DGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFC 1457
+ TV GWGQ LQ +I C + P + E+ C
Sbjct: 114 LNNKFENIWATVSGWGQSNTD----TVILQYTYNLVIDNDRCAQE---YPPGIIVESTIC 166
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTS--NGYGCARANRPGVYTKVSNYIPW 1515
G+ C GDSGGP + + L+GV S +G GC +P +++V++Y+ W
Sbjct: 167 GDTS-DGKSPCFGDSGGPFVLS---DKNLLIGVVSFVSGAGCES-GKPVGFSRVTSYMDW 221
Query: 1516 LYNN 1519
+ N
Sbjct: 222 IQQN 225
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 263 bits (674), Expect = 6e-77
Identities = 60/326 (18%), Positives = 104/326 (31%), Gaps = 61/326 (18%)
Query: 1246 CSQKQVVAVNCSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALY-- 1303
S+K C + + + S+ PWQA +
Sbjct: 176 ASKKDNEQHVCKVKDMECLEDVFYQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKISVI 235
Query: 1304 --KEGEFQCGATLISDQWLLSAGHCFYRAQDDY-WVARLGTLRRGTKLPSPYEQLRPISK 1360
+G C ++S+ ++L+A HCF ++ +G ++ I
Sbjct: 236 RPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGG----------EKRDLEIEV 285
Query: 1361 IILHPQY---------VDAGFINDISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTV 1409
++ HP Y + + D++++K+K + +RPICLP L
Sbjct: 286 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPT 345
Query: 1410 VGWGQLFE-----------IGRVFPDTLQEVQLPIISTAE---CRKRTLFLPLY------ 1449
Q E L ++ I + + C + + P Y
Sbjct: 346 TTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDI 405
Query: 1450 --RVTENMFCAGFERG--GRDACLGDSGGPLMCQEPDGRWSLMGVTSNGY--GCARANR- 1502
VT C G + C GDSGGPL+ + R+ +GV S G C R
Sbjct: 406 SEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQ 464
Query: 1503 -------PGVYTKVSNYIPWLYNNMA 1521
+ + +PWL +
Sbjct: 465 KQVPAHARDFHINLFQVLPWLKEKLQ 490
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 262 bits (670), Expect = 3e-76
Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 57/287 (19%)
Query: 1284 RIVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQD-DYWVARLGTL 1342
+ + PW + + + C LISDQW+L+A HCF D W +G
Sbjct: 223 GNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDP 282
Query: 1343 RRGTKLPSPYEQLRPISKIILHPQY---------VDAGFINDISILKMKTP--FSNYVRP 1391
+ + + I K ++ P + + + +DI++LK+ S + RP
Sbjct: 283 KS------QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARP 336
Query: 1392 ICLPHPNTP-----LTDGTLCTVVGWGQLFEIGR-VFPDTLQEVQLPI------------ 1433
ICLP G+ C L + L +L I
Sbjct: 337 ICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCA 396
Query: 1434 --ISTAECRKRTLFLPLYRVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVT 1491
+S + L VT+ C+G + C G+SGG + + R+ +G+
Sbjct: 397 EVVSQEKTMFPNLTDVREVVTDQFLCSGTQ-EDESPCKGESGGAVFLER-RFRFFQVGLV 454
Query: 1492 S-----NGYGCARAN------------RPGVYTKVSNYIPWLYNNMA 1521
S G A N + + PWL ++
Sbjct: 455 SWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG 501
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate pathway;
HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D*
2ok5_A* 2xwb_F*
Length = 741
Score = 238 bits (607), Expect = 8e-66
Identities = 57/295 (19%), Positives = 98/295 (33%), Gaps = 61/295 (20%)
Query: 1284 RIVGGGNARLGSWPWQAALYK----EGEFQCGATLISDQWLLSAGHCFYRAQDDY-WVAR 1338
PWQA + +G C ++S+ ++L+A HCF ++
Sbjct: 456 VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVS 515
Query: 1339 LGTLRRGTKLPSPYEQLRPISKIILHPQY---------VDAGFINDISILKMKTP--FSN 1387
+G ++ I ++ HP Y + + D++++K+K +
Sbjct: 516 VGG----------EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQ 565
Query: 1388 YVRPICLPHPNTP-----LTDGTLCTVVGWGQLFEIG------RVFPDTLQEVQLPIIST 1436
+RPICLP L T C L L ++ I +
Sbjct: 566 TIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNG 625
Query: 1437 AE---CRKRTLFLPLYR--------VTENMFCAGFERG--GRDACLGDSGGPLMCQEPDG 1483
+ C + + P Y VT C G + C GDSGGPL+ +
Sbjct: 626 DKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RS 684
Query: 1484 RWSLMGVTSNG--YGCARANR--------PGVYTKVSNYIPWLYNNMAASEYNMM 1528
R+ +GV S G C R + + +PWL + + +
Sbjct: 685 RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGFL 739
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 197 bits (503), Expect = 2e-58
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 20/157 (12%)
Query: 1374 NDISILKMKTP--FSNYVRPICLPHPNTPLTDGTLCTVVGWGQLFEIGR--VFPDTLQEV 1429
+D+ +L++++P ++ V+ + LP L G+ C GWG + FPD +Q V
Sbjct: 8 HDLMLLRLQSPAKITDAVKVLELPTQEPEL--GSTCEASGWGSIEPGPDDFEFPDEIQCV 65
Query: 1430 QLPIISTAECRKRTLFLPLY--RVTENMFCAGFERGGRDACLGDSGGPLMCQEPDGRWSL 1487
QL ++ C + +VTE+M CAG+ GG+D C+GDSGGPL+C +G W
Sbjct: 66 QLTLLQNTFCAD------AHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC---NGMWQ- 115
Query: 1488 MGVTSNGYG-CARANRPGVYTKVSNYIPWLYNNMAAS 1523
G+TS G+ C AN+P +YTK+ Y+ W+ + + +
Sbjct: 116 -GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITEN 151
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B
1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 173 bits (440), Expect = 3e-50
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 1285 IVGGGNARLGSWPWQAAL-YKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLR 1343
IV G A GSWPWQ +L K G CG +LI++ W+++A HC V G
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTT---SDVVVAGEFD 57
Query: 1344 RGTKLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTP--FSNYVRPICLPHPNTPL 1401
+G+ S Q I+K+ + +Y NDI++LK+ T FS V +CLP +
Sbjct: 58 QGS--SSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDF 115
Query: 1402 TDGTLCTVVGWG 1413
GT C GWG
Sbjct: 116 AAGTTCVTTGWG 127
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 159 bits (405), Expect = 4e-46
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 1422 FPDTLQEVQLPIISTAECRKRTLFLPLY--RVTENMFCAGFERGGRDACLGDSGGPLMCQ 1479
PD LQ+ LP++S C+K + ++ + M CAG G +C+GDSGGPL+C+
Sbjct: 3 TPDRLQQASLPLLSNTNCKK------YWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCK 54
Query: 1480 EPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAAS 1523
+ +G W+L+G+ S G + PGVY +V+ + W+ +AA+
Sbjct: 55 K-NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 97
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 101 bits (253), Expect = 9e-26
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 1285 IVGGGNARLGSWPWQAALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLG--TL 1342
I+GG S PWQ A+Y FQCG L++ +W+L+A HC D+Y V LG L
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK---NDNYEV-WLGRHNL 56
Query: 1343 RRGTKLPSPYEQLRPISKIILHPQY 1367
Q ++ HP +
Sbjct: 57 FE----NENTAQFFGVTADFPHPGF 77
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta
propeller, cholesterol clearance, PCSK autocatalytic
cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 109 bits (274), Expect = 2e-24
Identities = 56/182 (30%), Positives = 74/182 (40%), Gaps = 26/182 (14%)
Query: 991 SECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCA-------DFLKSQFLTRKI 1043
CE N F+C +G+C+S C+ +C DGSDE +C DF + R I
Sbjct: 22 DRCERNE-FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCI 80
Query: 1044 -----CDGIIDCWDFSDEYECE--WCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQ 1096
CDG +DC + SDE C CS ++ C + + CI R +CD +DC G DE
Sbjct: 81 PQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGK-CISRQFVCDSDRDCLDGSDEAS 139
Query: 1097 CINLFPIETRSPSSTYLRNAMQGRSDVPIRVHQRTDNNPKHVLQDGEDSYLQNTLYPVYH 1156
C P T + Q S I DN+P E LY
Sbjct: 140 C----------PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQG 189
Query: 1157 DS 1158
DS
Sbjct: 190 DS 191
Score = 103 bits (258), Expect = 2e-22
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 999 FRCGN--GECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGII 1048
F CG C+ +C+ VDC +GSDE+ C + +F + +CD
Sbjct: 70 FSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDR 129
Query: 1049 DCWDFSDEYECE--WCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIETR 1106
DC D SDE C C P + C +S CI + CD DC G DE +
Sbjct: 130 DCLDGSDEASCPVLTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQ 188
Query: 1107 SPSST 1111
SS
Sbjct: 189 GDSSP 193
Score = 99.5 bits (247), Expect = 4e-21
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 989 NRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFL--------T 1040
+ S C F C +GEC+ +C+ DC D SDE+NC+ A +F
Sbjct: 190 DSSPCSAFE-FHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHG 248
Query: 1041 RKICDGIIDCWDFSDEYEC----EWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQ 1096
+ CD DC D SDE C P ++ C + CI ++C+ +DC DE
Sbjct: 249 SRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGE-CITLDKVCNMARDCRDWSDEPI 307
Query: 1097 C 1097
Sbjct: 308 K 308
Score = 99.1 bits (246), Expect = 6e-21
Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 21/122 (17%)
Query: 998 SFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRK--------------- 1042
SF+C + C+ C+ DC DGSDE C Q +
Sbjct: 149 SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIH 208
Query: 1043 ---ICDGIIDCWDFSDEYECEW--CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
CDG DC D SDE C C P ++ C + CI +R CD DC DE C
Sbjct: 209 SSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVGC 267
Query: 1098 IN 1099
+N
Sbjct: 268 VN 269
Score = 91.4 bits (226), Expect = 1e-18
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 22/119 (18%)
Query: 1538 HVC--NGHRCPLGECLPKARVCNGYMECSDGKCEMNSS----------FRCGN--GECVS 1583
C N +C G+C+ VC+G EC DG E + F CG C+
Sbjct: 22 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 81
Query: 1584 IGSKCNQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGIIDCWDFSDEYEC 1634
+C+ VDC +GSDE+ C + +F + +CD DC D SDE C
Sbjct: 82 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 140
Score = 88.4 bits (218), Expect = 1e-17
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 1537 QHVCNGHRCPLGECLPKARVCNGYMECSDGKCEMN--------SSFRCGNGECVSIGSKC 1588
C G C+P+ C+G ++C +G E FRC +G+C+S C
Sbjct: 69 DFSCGGRV---NRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVC 125
Query: 1589 NQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGIIDCWDFSDEYEC 1634
+ DC DGSDE +C + F CD DC D SDE+
Sbjct: 126 DSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 179
Score = 86.4 bits (213), Expect = 5e-17
Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 28/126 (22%)
Query: 1537 QHVCNGH--RCPLGECLPKARVCNGYMECSDGKCEMN------------------SSFRC 1576
C +C C+P+ C+ +C DG E F C
Sbjct: 142 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC 201
Query: 1577 GNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGIIDCWDF 1628
+GEC+ +C+ DC D SDE+NC+ A +F + CD DC D
Sbjct: 202 LSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDM 261
Query: 1629 SDEYEC 1634
SDE C
Sbjct: 262 SDEVGC 267
Score = 77.2 bits (189), Expect = 3e-14
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 1557 CNGYMECSDGKCEMNSS-----FRCGNGECVSIGSKCNQLVDCADGSDEKNCSCA----- 1606
+ + + F+C +G+C+S C+ +C DGSDE +C
Sbjct: 7 WTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCK 66
Query: 1607 --DFLKSQFLTRKI-----CDGIIDCWDFSDEYEC 1634
DF + R I CDG +DC + SDE C
Sbjct: 67 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 101
Score = 76.8 bits (188), Expect = 3e-14
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 16/98 (16%)
Query: 1013 CNQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGIIDCWDFSDEYECE---- 1060
+ A C ++F + +CDG +C D SDE +
Sbjct: 7 WTVALLLAAAGTAVGDRCER---NEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV 63
Query: 1061 WCSPGQYICPN-SRVCIERTRLCDGIKDCPLGDDEKQC 1097
C G + C CI + CDG DC G DE+ C
Sbjct: 64 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 101
Score = 75.6 bits (185), Expect = 9e-14
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDG----------KCEMNSSFRCGNGECVSIGSKCN 1589
+ +C G C+ +R C+ +C D CE + F+C +GEC+++ CN
Sbjct: 235 PDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCN 294
Query: 1590 QLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYEC 1634
DC D SDE C C D YEC
Sbjct: 295 MARDCRDWSDEPIKECGTNECLDNNGGCSH----VCNDLKIGYEC 335
Score = 70.6 bits (172), Expect = 3e-12
Identities = 33/169 (19%), Positives = 51/169 (30%), Gaps = 14/169 (8%)
Query: 989 NRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGII 1048
N + CE + F+C +GEC+++ CN DC D SDE C
Sbjct: 269 NVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC-------------GTNEC 315
Query: 1049 DCWDFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQ-CINLFPIETRS 1107
+ + C G + R C+ I +C D Q C+NL
Sbjct: 316 LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 375
Query: 1108 PSSTYLRNAMQGRSDVPIRVHQRTDNNPKHVLQDGEDSYLQNTLYPVYH 1156
+ + + N V + D +L P
Sbjct: 376 CEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 424
Score = 42.1 bits (98), Expect = 0.002
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 25/90 (27%)
Query: 1541 NGHRCPLGECLPKARVCNGYMECSDGKCE-------------------------MNSSFR 1575
N +C GEC+ +VCN +C D E +
Sbjct: 277 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECL 336
Query: 1576 CGNGECVSIGSKCNQLVDCADGSDEKNCSC 1605
C +G + +C + +C D
Sbjct: 337 CPDGFQLVAQRRCEDIDECQDPDTCSQLCV 366
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 106 bits (264), Expect = 3e-23
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 987 SVNRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADF--LKSQFL----- 1039
+V CE N F+C +G+C+S C+ +C DGSDE +C F
Sbjct: 1 AVG-DRCERNE-FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV 58
Query: 1040 -----TRKICDGIIDCWDFSDEYECE--WCSPGQYICPNSRVCIERTRLCDGIKDCPLGD 1092
CDG +DC + SDE C CS ++ C + + CI R +CD +DC G
Sbjct: 59 NRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGK-CISRQFVCDSDRDCLDGS 117
Query: 1093 DEKQC 1097
DE C
Sbjct: 118 DEASC 122
Score = 103 bits (258), Expect = 1e-22
Identities = 43/149 (28%), Positives = 56/149 (37%), Gaps = 13/149 (8%)
Query: 999 FRCGN--GECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGII 1048
F CG C+ +C+ VDC +GSDE+ C + +F + +CD
Sbjct: 52 FSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDR 111
Query: 1049 DCWDFSDEYECEW--CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIETR 1106
DC D SDE C C P + C +S CI + CD DC G DE +
Sbjct: 112 DCLDGSDEASCPVLTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQ 170
Query: 1107 SPSSTYLRNAMQGRSDVPIRVHQRTDNNP 1135
SS S I R D P
Sbjct: 171 GDSSPCSAFEFHCLSGECIHSSWRCDGGP 199
Score = 99.1 bits (246), Expect = 5e-21
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 989 NRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFL--------T 1040
+ S C F C +GEC+ +C+ DC D SDE+NC+ A +F
Sbjct: 172 DSSPCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHG 230
Query: 1041 RKICDGIIDCWDFSDEYEC----EWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQ 1096
+ CD DC D SDE C P ++ C + CI ++C+ +DC DE
Sbjct: 231 SRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGE-CITLDKVCNMARDCRDWSDEPI 289
Query: 1097 C 1097
Sbjct: 290 K 290
Score = 89.1 bits (220), Expect = 5e-18
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 1543 HRCPLGECLPKARVCNGYMECSDGKCEMN--------SSFRCGNGECVSIGSKCNQLVDC 1594
C GEC+ + C+G +C D E N F+C +G C+ +C++ DC
Sbjct: 181 FHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC 240
Query: 1595 ADGSDEKNCSCADF--LKSQFLTR--------KICDGIIDCWDFSDEYEC 1634
D SDE C ++F K+C+ DC D+SDE
Sbjct: 241 KDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 290
Score = 88.7 bits (219), Expect = 8e-18
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 1543 HRCPLGECLPKARVCNGYMECSDGKCEMNSS----------FRCGN--GECVSIGSKCNQ 1590
+C G+C+ VC+G EC DG E + F CG C+ +C+
Sbjct: 11 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 70
Query: 1591 LVDCADGSDEKNCSCADFLKSQFL--------TRKICDGIIDCWDFSDEYEC 1634
VDC +GSDE+ C + +F + +CD DC D SDE C
Sbjct: 71 QVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 122
Score = 85.6 bits (211), Expect = 6e-17
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 26/120 (21%)
Query: 1541 NGHRCPLGECLPKARVCNGYMECSDGKCEMNSS------------------FRCGNGECV 1582
+C C+P+ C+ +C DG E F C +GEC+
Sbjct: 130 ASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECI 189
Query: 1583 SIGSKCNQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGIIDCWDFSDEYEC 1634
+C+ DC D SDE+NC+ A +F + CD DC D SDE C
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249
Score = 85.2 bits (210), Expect = 9e-17
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 1537 QHVCNGHRCPLGECLPKARVCNGYMECSDGKCEMN--------SSFRCGNGECVSIGSKC 1588
C G C+P+ C+G ++C +G E FRC +G+C+S C
Sbjct: 51 DFSCGGRV---NRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVC 107
Query: 1589 NQLVDCADGSDEKNCSCADFLKSQFL--------TRKICDGIIDCWDFSDEYEC 1634
+ DC DGSDE +C + F CD DC D SDE+
Sbjct: 108 DSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 161
Score = 77.2 bits (189), Expect = 2e-14
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDG----------KCEMNSSFRCGNGECVSIGSKCN 1589
+ +C G C+ +R C+ +C D CE + F+C +GEC+++ CN
Sbjct: 217 PDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCN 276
Query: 1590 QLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYEC 1634
DC D SDE C C D YEC
Sbjct: 277 MARDCRDWSDEPIKECGTNECLDNNGGCSH----VCNDLKIGYEC 317
Score = 69.4 bits (169), Expect = 6e-12
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 1562 ECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADF--LKSQFL----- 1614
C + F+C +G+C+S C+ +C DGSDE +C F
Sbjct: 5 RCERNE------FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV 58
Query: 1615 -----TRKICDGIIDCWDFSDEYEC 1634
CDG +DC + SDE C
Sbjct: 59 NRCIPQFWRCDGQVDCDNGSDEQGC 83
Score = 66.4 bits (161), Expect = 6e-11
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 988 VNRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGI 1047
VN + CE + F+C +GEC+++ CN DC D SDE C
Sbjct: 250 VNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC-------------GTNE 296
Query: 1048 IDCWDFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
+ + C G + R C+ I +C D Q
Sbjct: 297 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 346
Score = 45.6 bits (107), Expect = 1e-04
Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 28/112 (25%)
Query: 1541 NGHRCPLGECLPKARVCNGYMECSDGKCE-------------------------MNSSFR 1575
N +C GEC+ +VCN +C D E +
Sbjct: 259 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECL 318
Query: 1576 CGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWD 1627
C +G + +C + +C D + +G
Sbjct: 319 CPDGFQLVAQRRCEDIDECQDPDTCSQLCVN---LEGGYKCQCEEGFQLDPH 367
Score = 32.5 bits (73), Expect = 1.4
Identities = 11/111 (9%), Positives = 28/111 (25%), Gaps = 2/111 (1%)
Query: 993 CEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQF--LTRKICDGIIDC 1050
++ C +G + +C + +C D + D
Sbjct: 311 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 370
Query: 1051 WDFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLF 1101
+ + + + E T L +++ D E ++
Sbjct: 371 CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 421
Score = 32.1 bits (72), Expect = 2.1
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 8/74 (10%)
Query: 1538 HVCNGHRCPLGECLPKARVCNGYMECSDGKCE--------MNSSFRCGNGECVSIGSKCN 1589
+ CP G L R C EC D +C G + +K
Sbjct: 312 KIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 371
Query: 1590 QLVDCADGSDEKNC 1603
+ V N
Sbjct: 372 KAVGSIAYLFFTNR 385
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 93.9 bits (233), Expect = 2e-21
Identities = 41/242 (16%), Positives = 75/242 (30%), Gaps = 36/242 (14%)
Query: 1285 IVGGGNARL-----GSWPWQAALYKE-GEFQCGATLISDQWLLSAGHCFYRAQDDYWVAR 1338
+V G + R P+ + Y G C TLI+ +L+ GHC Y + A+
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60
Query: 1339 LGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGFIN-DISILKMKTPFSNYVRPICLPHP 1397
+ +++ + Y++ G D +++K T N V +
Sbjct: 61 GSVYPGMNDSTAVNGSAN-MTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIR-- 117
Query: 1398 NTPLTDGTLCTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFC 1457
GT + G+ D ++ + R N+
Sbjct: 118 QVTNLTGTTIKISGYPG---------DKMRSTGKVSQWEMSGS-------VTREDTNLAY 161
Query: 1458 AGFERGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANR-PGVYTKVSNYIPWL 1516
D G+SG ++ D ++GV + GY N P +I +
Sbjct: 162 -----YTIDTFSGNSGSAML----DQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYA 212
Query: 1517 YN 1518
Sbjct: 213 KA 214
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 85.0 bits (211), Expect = 4e-20
Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 31/106 (29%)
Query: 992 ECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCW 1051
C FRC +G+C+S C+ DC DGSDE +C
Sbjct: 2 TCSQAE-FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT------------------- 41
Query: 1052 DFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
C P + C +S CI + CD DC G DE
Sbjct: 42 ----------CGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQ 76
Score = 81.9 bits (203), Expect = 5e-19
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 1543 HRCPLGECLPKARVCNGYMECSDGKCEMN--------SSFRCGNGECVSIGSKCNQLVDC 1594
RC G+C+ + VC+ +C DG E + +SF+C + C+ C+ DC
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC 67
Query: 1595 ADGSDEKNCSC 1605
DGSDE C
Sbjct: 68 EDGSDEWPQRC 78
Score = 80.0 bits (198), Expect = 3e-18
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 1562 ECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQF-------- 1613
CS FRC +G+C+S C+ DC DGSDE +C + F
Sbjct: 2 TCSQA------EFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCI 55
Query: 1614 LTRKICDGIIDCWDFSDEYEC 1634
CD DC D SDE+
Sbjct: 56 PQLWACDNDPDCEDGSDEWPQ 76
Score = 58.8 bits (143), Expect = 6e-11
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 992 ECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSC 1030
C +SF+C + C+ C+ DC DGSDE C
Sbjct: 41 TCG-PASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 78
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 81.9 bits (203), Expect = 5e-19
Identities = 26/101 (25%), Positives = 31/101 (30%), Gaps = 28/101 (27%)
Query: 999 FRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYE 1058
F C +G C+ I C+ DC D SDE C
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESASCA----------YPTC-------------- 45
Query: 1059 CEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCIN 1099
Q+ C N R CI CD DC DE C +
Sbjct: 46 ---FPLTQFTCNNGR-CININWRCDNDNDCGDNSDEAGCSH 82
Score = 78.5 bits (194), Expect = 8e-18
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 1544 RCPLGECLPKARVCNGYMECSDG----------KCEMNSSFRCGNGECVSIGSKCNQLVD 1593
C G C+P + C+ +C D C + F C NG C++I +C+ D
Sbjct: 11 SCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDND 70
Query: 1594 CADGSDEKNCS 1604
C D SDE CS
Sbjct: 71 CGDNSDEAGCS 81
Score = 72.7 bits (179), Expect = 1e-15
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 1574 FRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFL--KSQF--------LTRKICDGII 1623
F C +G C+ I C+ DC D SDE +QF CD
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDN 69
Query: 1624 DCWDFSDEYEC 1634
DC D SDE C
Sbjct: 70 DCGDNSDEAGC 80
Score = 56.9 bits (138), Expect = 4e-10
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 990 RSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCS 1029
C + F C NG C++I +C+ DC D SDE CS
Sbjct: 42 YPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCS 81
Score = 48.8 bits (117), Expect = 2e-07
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
C P Q+ C + R CI + CD DC DE
Sbjct: 5 CPPNQFSCASGR-CIPISWTCDLDDDCGDRSDESAS 39
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 82.1 bits (202), Expect = 2e-17
Identities = 35/237 (14%), Positives = 69/237 (29%), Gaps = 30/237 (12%)
Query: 1294 GSWPWQAALY---KEGEFQCGATLISDQ---WLLSAGHCFYRAQDDYWVARLGTLRRGTK 1347
P ++ +G+F C A +++ + +AGHC + +
Sbjct: 4 ADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDY 63
Query: 1348 LPSPYEQLRPISKIILHPQYVDAG-FINDISILKMKTPFSNYVRPICLPHPNTPLTDGTL 1406
S + + +++ ++ + G F +D + ++T V+
Sbjct: 64 GESEH-GVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQPRG 122
Query: 1407 CTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRD 1466
+G P QE+ C P+ T+ + C +
Sbjct: 123 QYYSAYG----YPAAAPFNGQELH-------SCHGTATNDPMGSSTQGIPC--------N 163
Query: 1467 ACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAAS 1523
G SGGP + S GY G Y + YN + +
Sbjct: 164 MTGGSSGGPWFLGN-GTGGAQNSTNSYGYTFLPNVMFGPY--FGSGAQQNYNYASTT 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 87.8 bits (217), Expect = 2e-17
Identities = 111/641 (17%), Positives = 186/641 (29%), Gaps = 253/641 (39%)
Query: 115 ASVLSPAIKYCGVIGFKNGSLIVFYRIILDRRKIPRSIGNVEEVVKNILVDEITSRKAVA 174
+ K+ +G+ + P +G ++V+ L +
Sbjct: 55 TTPAELVGKF---LGY------------VSSLVEPSKVGQFDQVLNLCLTE--------- 90
Query: 175 FKNIKVDENDIHIKRYFGVSL-ASLTNKEDNVSSEVQSEDFTSSSNLDDTNRIVTLQSHS 233
F+N ++ NDIH +L A L + D + L T ++
Sbjct: 91 FENCYLEGNDIH-------ALAAKLLQEND--------------TTLVKTKELI------ 123
Query: 234 SSPDTPRPSSPNSKRKYSTSHIQRKVTPNSDPSSLETETTLLDMHTSTVPPNKAVFGSFT 293
K + + ++ S+L V A
Sbjct: 124 -------------KNYITARIMAKRPFDKKSNSAL----------FRAVGEGNAQL--VA 158
Query: 294 ILDKPHFG-------------DVFTSVATSKPPLENINEKIRITPSTNQPRKRTSPIANK 340
I FG D++ T + ++ I+ + T RT+ A K
Sbjct: 159 I-----FGGQGNTDDYFEELRDLYQ---TYHVLVGDL---IKFSAETLSELIRTTLDAEK 207
Query: 341 H--AGL-----IETANDEPVFRETDLDDKMLRHSP-------LESFAHNSLLDMYKPMME 386
GL +E ++ P D L P + AH Y
Sbjct: 208 VFTQGLNILEWLENPSNTP-------DKDYLLSIPISCPLIGVIQLAH------Y----- 249
Query: 387 EDEEIKTKSQPISKPEAAMPKEEISGV-GEAQVIV---LPAASSS----HELLLSPHGTL 438
+ K + P + + G G +Q +V A + S + L
Sbjct: 250 ---VVTAKLLGFT-PGEL--RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 439 HSKPTTFRPHTYTKSRQTTQH-SVPPEIVV-TTEARKATPS---SVHGSSPKQKPNRNEV 493
F + + + S+PP I+ + E + PS S+ + +Q V
Sbjct: 304 ------F--FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ------V 349
Query: 494 QKQILILKEKPAVMNQNLVPNRRKDEISTTNKNSQL-IHGPSSEFPVLQKIGNLDEVLKA 552
Q + N +L P ++ EIS N L + GP L L+ L+
Sbjct: 350 QDYV-------NKTNSHL-PAGKQVEISLVNGAKNLVVSGPPQS---LY---GLNLTLRK 395
Query: 553 YKA------NRTMSSIQKK---------------------------NDFVSSETAFNG-D 578
KA +R S ++K D V + +FN D
Sbjct: 396 AKAPSGLDQSRIPFS-ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 579 LAIMESSNEYQYAHT-----IRTPGN----RHSPVVTLLPVR---------SNV---GPG 617
+ I Y T +R R + LPV+ +++ GPG
Sbjct: 455 IQIP------VY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 618 KPLRPRPYLG--TRNNIGTTTITTIPTPTLEDDPHNIDSDY 656
LG T N T + I TL+ +P D DY
Sbjct: 508 GASG----LGVLTHRNKDGTGVRVIVAGTLDINP---DDDY 541
Score = 50.0 bits (119), Expect = 7e-06
Identities = 84/553 (15%), Positives = 146/553 (26%), Gaps = 218/553 (39%)
Query: 424 ASSSHELLLSPHGTL-HSK--PTTFRPHTYTKSRQTTQHSVPPEIVVTTE-ARKATPSSV 479
A S+ L LS HG+L H PT ++ ++ +P T A P++
Sbjct: 3 AYSTRPLTLS-HGSLEHVLLVPTASFFI-ASQLQEQFNKILPE---PTEGFAADDEPTTP 57
Query: 480 ------------HGSSPKQKPNRNEVQKQILILKE-KPAVMNQN----LVPNRRKDEIST 522
P + ++V L L E + + N L ++ +T
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLN--LCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 523 TNKNSQLI----------------HGPSSEFPVLQ----KI-------GN----LDEVLK 551
K +LI S+ F + ++ GN +E+
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 552 AYKANRTMSSIQKKNDFVSSETAFNGDLAIMESSNEYQYAHTI------RTPGNRHS--- 602
Y+ + D + +L E + + P N
Sbjct: 176 LYQTYHVLVG-----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 603 --------PVVTLL--------PVRSNVGPGKPLRPRPYLGT------------------ 628
P++ ++ PG+ LR G
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-LRSY-LKGATGHSQGLVTAVAIAETDS 288
Query: 629 ----RNN----------IGTTTITTIPTPTLEDDPHNIDSDYVDQHSNRGAS-M-NIFKG 672
+ IG P +L P +I D ++ ++ S M +I
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSL---PPSILEDSLE-NNEGVPSPMLSI-SN 343
Query: 673 HNLDY-----GALNTKDFYLPPPPNISDHIINDFSDSLLDKISVGDSPSLSEEAPPLDNG 727
+ N+ +LP + IS L NG
Sbjct: 344 LTQEQVQDYVNKTNS---HLPAGKQVE--------------IS-------------LVNG 373
Query: 728 DDNFSTTEESRKVILNTEVVT-STRSL-NLNGT-HELTVKN----------ERTGKMAQD 774
N VV+ +SL LN T + + ER K +
Sbjct: 374 AKNL--------------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 775 FL-----LHSNIHKMKFDRGKKDQAVNSGSSDRMDHG--------RAPFVVYATSLENNE 821
FL HS H + A + + D + + + P VY T +
Sbjct: 420 FLPVASPFHS--HLLV-------PASDLINKDLVKNNVSFNAKDIQIP--VYDT--FDGS 466
Query: 822 NLFSYGSEEHKDL 834
+L + +
Sbjct: 467 DLRVLSGSISERI 479
Score = 43.9 bits (103), Expect = 6e-04
Identities = 88/582 (15%), Positives = 152/582 (26%), Gaps = 245/582 (42%)
Query: 1101 FPIETRSPSSTYLRNAMQGRSDVPIRVHQRTDNNPKHVLQDGEDS--------YLQNTLY 1152
+ P++++ A Q + + + T+ D E + +L
Sbjct: 20 LLV----PTASFF-IASQLQEQFNKILPEPTEG----FAADDEPTTPAELVGKFL----- 65
Query: 1153 PVYHDSGFLMIQ----KQGQWGKLCMNQINNFIMKTLKWKISDLGKAICKSMTFRDLNEI 1208
G++ K GQ+ ++ + F + + N+I
Sbjct: 66 ------GYVSSLVEPSKVGQFDQVLNLCLTEF------------------ENCYLEGNDI 101
Query: 1209 EAVA---DPSTDDSI---------YYELSMNAINS--SAATKSALLFQKTKCSQKQVVAV 1254
A+A D ++ Y + + SAL F+ Q+VA+
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYIT-ARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAI 159
Query: 1255 --------NC------------SSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLG 1294
+ + I+ A + L R+ + V +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS---ELIRTTLDAEKVFTQGLNIL 216
Query: 1295 SW--------------------P----WQAALY---------KEGEFQ--------CGAT 1313
W P Q A Y GE +
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 1314 LI-------SDQW-------------LLSAGHCFYRAQDDYWVARL------GTLRRGTK 1347
L+ +D W L G R + Y L +L
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIG---VRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 1348 LPSP--------YEQL--------------RPISKIILH--P-QYVDAGFIND-----IS 1377
+PSP EQ+ + + I L V +G ++
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 1378 ILKMK---------TPFSN-----YVR--PICLP-HPNTPLTDGTLCTVVGWGQLFEIGR 1420
+ K K PFS R P+ P H + L + L +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKD--LVKNNV 448
Query: 1421 VFPDTLQEVQLPIIST---AECRK------RTLF-----LPLYRVTENMFCAG----FER 1462
F +++Q+P+ T ++ R + LP+ T F A F
Sbjct: 449 SFNA--KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 1463 GGRDACLGDSG-GPLMCQEPDGRW-------SLMGVTSNGYG 1496
G G SG G L + DG +L + YG
Sbjct: 507 G------GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 39.6 bits (92), Expect = 0.010
Identities = 45/293 (15%), Positives = 86/293 (29%), Gaps = 116/293 (39%)
Query: 1163 IQKQGQWGKLCM---------------NQINNFIMKTLKWKISDLGKAICKSMTF----- 1202
Q+QG M N+ +N T + I D+ ++T
Sbjct: 1626 SQEQG------MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 1203 --RDLNE--IEAVADPSTDDSIYYELSMNAINSSAATKSALLFQ-------KTKCSQKQV 1251
+ + E + + D + E IN + ++ F+ T+ +Q +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS---TSYTFRSEKGLLSATQFTQPAL 1736
Query: 1252 VAVNCSSLEC----GIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEGE 1307
+ ++ E G+ P G HS LG + AAL
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAG---------HS---------LGEY---AALA---- 1771
Query: 1308 FQCGATLIS--DQ-WLLSAGHCFYR-------------AQDDYWVARLGTLRRGTKLPSP 1351
A ++S ++ FYR + +Y + + R
Sbjct: 1772 --SLADVMSIESLVEVV-----FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ- 1823
Query: 1352 YEQLRPISKIILH-------------P--QYVDAG-------FINDISILKMK 1382
E L+ + + + QYV AG N ++ +K++
Sbjct: 1824 -EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Score = 36.2 bits (83), Expect = 0.14
Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 62/149 (41%)
Query: 56 LLVITIAALAIYMGVELIF--DSSFRVTAGDSYNPSL-ENSTSNLYKEKSKRYKSMIEKL 112
L ++ AA + + + D++F AG S L E
Sbjct: 1736 LTLMEKAAFED-LKSKGLIPADATF---AGHS----LGE--------------------- 1766
Query: 113 YNASVLSPAIKYCGVIGFKNGSLIVFYRIILDRRKIPR------------------SIGN 154
Y A S A V+ ++ +VFYR + + +PR +
Sbjct: 1767 YAALA-SLA----DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 155 VEEVVKNILVDEITSRK-----AVAFKNI 178
+E ++ + V+ + R V + N+
Sbjct: 1822 SQEALQYV-VERVGKRTGWLVEIVNY-NV 1848
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 7e-12
Identities = 108/743 (14%), Positives = 203/743 (27%), Gaps = 245/743 (32%)
Query: 778 HSNIHKMKFDRGKKDQAVNSGSSDRMDHGRAPFV----VYATSLENNENLFSYGSEEHKD 833
H + H M F+ G+ D + FV + +++ S EE
Sbjct: 1 HHHHHHMDFETGEHQYQYK----DILSVFEDAFVDNFDCKDV-QDMPKSILS--KEEIDH 53
Query: 834 LLNKRDGDTK------------ESGVK------LENNTS-EADSIEKKVILVMSSNSSNM 874
++ +D + E V+ L N I+ + S
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR----QPSMMT 109
Query: 875 LNFNENRTSDDNDNKNKAMAQNLLTQMLEKYNRVITNDSSVSSLKYLIDQISHQHLKHTH 934
+ E R NDN Q+ KYN VS L+ ++ Q L
Sbjct: 110 RMYIEQRDRLYNDN-----------QVFAKYN--------VSRLQ-PYLKL-RQALL--- 145
Query: 935 QHNPDTNISTKAIPSSFNFNQVNGIP-----ILTKVYTKVSKTNSTSKERNQTEFHLSVN 989
+ P N+ ++G+ + V + + + F L++
Sbjct: 146 ELRPAKNVL------------IDGVLGSGKTWVAL---DVCLSYKVQCKMDFKIFWLNLK 190
Query: 990 RSEC-----EMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKIC 1044
EM I D + + S L+ ++
Sbjct: 191 NCNSPETVLEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 1045 DGII---DCWD------FSDEYECEWCSPGQYICPNSRVCIERTR---LCDGI-----KD 1087
+ ++ + + F C ++ + TR + D +
Sbjct: 245 NCLLVLLNVQNAKAWNAF--NLSC-------------KILLT-TRFKQVTDFLSAATTTH 288
Query: 1088 CPLGDDEKQCINLFPIETRSPSSTYLRNAMQGRSDVPIRVHQRTDNNPKHV------LQD 1141
L L P E +S YL Q D+P + NP+ + ++D
Sbjct: 289 ISLDHHSM---TLTPDEVKSLLLKYLDCRPQ---DLP---REVLTTNPRRLSIIAESIRD 339
Query: 1142 GEDSYLQNTLYPVYHDSGFLMIQKQGQWGKLCMNQINNFIMKTLKWKISDLGKAICKSMT 1201
G ++ N W + +++ I +L L A + M
Sbjct: 340 GLATW-DN-------------------WKHVNCDKLTTIIESSLN----VLEPAEYRKM- 374
Query: 1202 FRDLNEIEAVADPSTD-----------DSIYYELSMNAINSSAATKSALLFQKTKCSQKQ 1250
F L +V PS D I + M +N K +L+ ++ K S
Sbjct: 375 FDRL----SVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLH--KYSLVEKQPKESTIS 427
Query: 1251 VVAVNCSSLECGIRPQANNIWGSVNLTRSMRHSRIVGGGNARLGSWPWQAALYKEGEFQC 1310
+ S+ ++ + N ++ H IV Y +
Sbjct: 428 I-----PSIYLELKVKLENE-------YAL-HRSIVDH--------------YNIPKTFD 460
Query: 1311 GATLISDQWLLSAGHCFYRAQDDYWVARLG----TLRRGTK---LPSPYEQLRPISKIIL 1363
LI D Y+ + +G + + + R + + I
Sbjct: 461 SDDLIPPYL------------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 1364 H---PQYVDAGFINDISILKMKTPFSNYVRPIC-------------LPHPNTPLTDGTLC 1407
H +N + LK + Y+ LP L
Sbjct: 509 HDSTAWNASGSILNTLQQLKF---YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 1408 TVVGWGQLFEIGRVFPDTLQEVQ 1430
++ + E +F + ++VQ
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQ 588
Score = 56.0 bits (134), Expect = 1e-07
Identities = 47/355 (13%), Positives = 98/355 (27%), Gaps = 93/355 (26%)
Query: 58 VITIAALAIYMGVELIFDSS-FRVTAGDSYNPS--LENSTSNLYKEKSKRYKSMIEKLYN 114
+ + Y V+ D F + + +P LE L + + S + N
Sbjct: 165 WVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSN 222
Query: 115 ASVLSPAIKYCGVIGFKNGSLIVFYRIILDRRKIPRSIGNVEEVVKNILVDEITSRKAV- 173
+ +I+ R +L + + +++ + + KA
Sbjct: 223 IKLRIHSIQA-------------ELRRLLKSKPYENCL---------LVLLNVQNAKAWN 260
Query: 174 AFKNIKVDENDIHIK-----RYFGVSLASLTNKEDNVSSEVQSEDFTSSSNLDDTNRIVT 228
AF ++ K R+ V+ ++S + S T D+ ++
Sbjct: 261 AF--------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLL 308
Query: 229 LQSHSSSPDTPR---PSSP-------NSKRKYSTSHIQRKVTPNSDPSSLETETTLLDMH 278
D PR ++P S R + N D TT+++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCD-----KLTTIIESS 362
Query: 279 TSTVPPN--KAVFGSFTILDKPHFGDVFTSVATSKPPLENINEKIRITPST------NQP 330
+ + P + +F ++ I +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPP----SA------------------HIPTILLSLIWFDVI 400
Query: 331 RKRTSPIANK--HAGLIETANDEPVFRETDLDDKMLRHSPLESFAHNSLLDMYKP 383
+ + NK L+E E + ++ E H S++D Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Score = 52.5 bits (125), Expect = 1e-06
Identities = 80/552 (14%), Positives = 158/552 (28%), Gaps = 155/552 (28%)
Query: 648 DPHNIDSDYVDQHSNRGASMNIFKGHNL----DYGALNTKDFYLPPPPNISDH------- 696
P + Y++Q +F +N+ Y L L P N+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 697 ------IINDFSDSLLDK-------ISVGDSPSLSEEAPPLDN----GDDNFSTTEE-SR 738
+ + + K +++ + S L D N+++ + S
Sbjct: 164 TWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 739 KVILNTEVVTST-RSLNLNGTHE---LTVKNERTGKMAQDFLLHSNIHKMKFDRGKKDQA 794
+ L + + R L + +E L + N + K F L I + D
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 795 VNSGSSD-RMDHGRAPFVVYATSLENNENLFSYGSEEHKDLLNKRDGDTKESGVKLENNT 853
+ ++ +DH + + ++L L+ R D
Sbjct: 282 SAATTTHISLDHHSMTL-----TPDEVKSLLL-------KYLDCRPQDLPR--------- 320
Query: 854 SEADSIEKKVILVMSSNSSNMLNFNENRTSDDNDNKNKAMAQNLLTQMLEKYNRVITNDS 913
E + + + +++ + + L N +K +I +S
Sbjct: 321 -EVLTTNPRRLSIIAESIRDGLA----------------TWDNWKHVNCDKLTTII--ES 361
Query: 914 SVSSLKYLIDQISHQHLKHTHQHNPDTNISTKAIPSSFNFNQVNGIP--ILTKVYTKVSK 971
S++ L+ + + P +I T + S F+ + ++ K++
Sbjct: 362 SLNVLEPAEYR---KMFDRLSVFPPSAHIPTILL-SLIWFDVIKSDVMVVVNKLHKY--- 414
Query: 972 TNSTSKERNQTEFHLSV----------NRSECEMNSSFRCGNGECVSIGSKCNQLVDCAD 1021
+ E+ E +S+ +E ++ S + +I K D
Sbjct: 415 ---SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYNI-PKTFDSDDLIP 466
Query: 1022 GSDE-----------KNCSCAD--------FLKSQFLTRKIC-DGIIDCW------DFSD 1055
+ KN + FL +FL +KI D
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 1056 --EYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIET---RSPSS 1110
Y+ YIC N + RL + I D L IE S +
Sbjct: 527 LKFYK-------PYICDNDP---KYERLVNAILD-----------FLPKIEENLICSKYT 565
Query: 1111 TYLRNAMQGRSD 1122
LR A+ +
Sbjct: 566 DLLRIALMAEDE 577
Score = 51.8 bits (123), Expect = 2e-06
Identities = 102/673 (15%), Positives = 194/673 (28%), Gaps = 182/673 (27%)
Query: 352 PVFRETDLDDKMLRHSPLESFAHNSLLDMYKPMM--EEDEEIKTKSQPISKPEAAMPKEE 409
VF + +D+ F + DM K ++ EE + I +S
Sbjct: 23 SVFEDAFVDN----------FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 410 ISGVGEAQVIVLPAASSSHELLLSPHGTLHSKPT-------TFRPHTYTKSRQTTQHSVP 462
Q V +++ L+SP T +P+ R Y ++ +++V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 463 ---PEIVVTTEARKATPSS---VHG---SSPKQKPNRNEVQKQILILKEKPAVMNQNLVP 513
P + + + P+ + G S K + L V V
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSG-----------KTWVAL----DVCLSYKVQ 177
Query: 514 NRRKDEI---STTNKNSQLIHGPSSEFPVLQKIGNLDEVLKAYKANRTMSSIQKKNDFVS 570
+ +I + N NS P + +LQ + N
Sbjct: 178 CKMDFKIFWLNLKNCNS-----PETVLEMLQ----------------KLLYQIDPNWTSR 216
Query: 571 SETAFNGDLAIMESSNEYQYAHTIRTPGNRHSPVVTLLPVRSNVGPGKPLRP-----RPY 625
S+ + N L I E + +++ + LL V NV K +
Sbjct: 217 SDHSSNIKLRIHSIQAELR--RLLKSKPYENC----LL-VLLNVQNAKAWNAFNLSCKIL 269
Query: 626 LGTRNNIGTTTITTIPT--PTLEDDPHNIDSDYVDQHSNRGASMNIFKGHNLDYGALNTK 683
L TR T ++ T +L+ + D ++ L Y L+ +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---------VKSLL----LKY--LDCR 314
Query: 684 DFYLPP------PPNIS-------DHI--INDFSDSLLDKISVGDSPSLSEEAPPLDNGD 728
LP P +S D + +++ DK++ SL+ P
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP------ 368
Query: 729 DNFSTTEESRK-----VILNTEVVTSTRSLNLNGTHEL--TVKNERTGKMAQDFLLHSNI 781
E RK + T L+L + V + +S +
Sbjct: 369 ------AEYRKMFDRLSVFPPSAHIPTILLSL-----IWFDVIKSDVMVVVNKLHKYSLV 417
Query: 782 HKMKFDRGKKDQAVNSGSSDRMDHGRAPFVVYATSLENNENLFSYGSEEHKDLLNK---- 837
++ K+ ++ ++ LEN L H+ +++
Sbjct: 418 -----EKQPKESTIS-------IPSI--YLELKVKLENEYAL-------HRSIVDHYNIP 456
Query: 838 RDGDTKESGVKLENN---------TSEADSIEKKVILVMSSNSSNMLNFN--ENRTSDDN 886
+ D+ + + + E+ + L+F E + D+
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIRHDS 511
Query: 887 DNKN-KAMAQNLLTQMLEKYNRVIT-NDSSVSSLKYLIDQISHQHLKHTHQHNPDTNIST 944
N N L Q L+ Y I ND L I + ++ + T++
Sbjct: 512 TAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLI-CSKYTDLLR 569
Query: 945 KAI--PSSFNFNQ 955
A+ F +
Sbjct: 570 IALMAEDEAIFEE 582
Score = 51.4 bits (122), Expect = 3e-06
Identities = 101/687 (14%), Positives = 201/687 (29%), Gaps = 206/687 (29%)
Query: 126 GVIGFKNGSLI-VFYRIILDRRKIPRSIGNVEEVVKNIL----VDEITSRKAVAFKNIKV 180
G ++ ++ VF D +V+++ K+IL +D I I
Sbjct: 12 GEHQYQYKDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHI----------IMS 57
Query: 181 DENDIHIKRYFGVSLASLTNKEDNVSSEVQSEDFTSSSNLDDTNRIVT-LQSHSSSPDTP 239
+ R F L +K++ + VQ F + +++ +++ P
Sbjct: 58 KDAVSGTLRLFWT----LLSKQEEM---VQ--KFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 240 -------RPSSPNSKRKYSTSHIQRKVTPNSDPSSLETETTLLDMHTSTVPPNKAVFG-- 290
R N + ++ ++ R L+ LL++ + N + G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRL------QPYLKLRQALLELRPA---KNVLIDGVL 159
Query: 291 -------------SFTILDKPHFGDVF-TSVATSKPP---LENINE-KIRITPSTNQPRK 332
S+ + K F +F ++ P LE + + +I P+
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 333 RTSPIANKHAGLIETANDEP--VFRETD-------LDD--------------KML---RH 366
+S I + I + E + + L + K+L R
Sbjct: 219 HSSNIKLR----IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 367 SPLESFAHNSL-----LDMYKPMMEEDEEIKTKSQPISKPEAAMPKEEISGVGEAQVIVL 421
+ F + LD + + DE + + +P+E
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------------- 321
Query: 422 PAASSSHELLLSPHGT-LHSKPTT---FRPHTYTKSRQTTQHSVPPEIVVTTEARKAT-- 475
+++ LS + T ++ K + S+ ++ E RK
Sbjct: 322 --VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDR 377
Query: 476 ----PSSVHGSSPKQ-------KPNRNEVQKQILILKEKPAVMNQNLVPNRRKDEISTTN 524
P S H P +++V +++ + + +LV + K+ +
Sbjct: 378 LSVFPPSAH--IPTILLSLIWFDVIKSDVM---VVVNK---LHKYSLVEKQPKESTIS-- 427
Query: 525 KNSQLIHGPSSEFPVLQKIGNLDE----VLKAYKANRTMSSIQKKNDFVSSETAFNGDLA 580
I E K+ N ++ Y I K D + DL
Sbjct: 428 -----IPSIYLEL--KVKLENEYALHRSIVDHYN-------IPKTFD--------SDDLI 465
Query: 581 IMESSNEYQYAHTIRTPGNRHSPVVTLLPVRSNVGPGK--PLRPRPYLGTR---NNIGTT 635
Y Y+H G H L N+ + L +L R I
Sbjct: 466 PPYLDQ-YFYSHI----G-HH-----L----KNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 636 TITTIPTPTLEDDPHNIDSDYVDQHSNRGASMNIFKGHNLDYGALNT-KDFYLPPPPNIS 694
+ + ++ + + Y I +N DF P I
Sbjct: 511 STAWNASGSILNTLQQLKF-YKPY---------ICDNDPKYERLVNAILDFL----PKIE 556
Query: 695 DHIINDFSDSLLDKISVGDSPSLSEEA 721
+++I LL + + ++ EEA
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 41.8 bits (97), Expect = 0.002
Identities = 68/412 (16%), Positives = 128/412 (31%), Gaps = 120/412 (29%)
Query: 13 HSGSSGSSSWIL---WGPNSSKKSQKSKPSQKCCSVLL-------ASVI--FLVL--LLV 58
S S SS+ L ++ KSKP + C LL A F + +L+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILL 270
Query: 59 ITIAALAIYMGVELIFDSSFRVTAGDSYNPSLENSTSNLYKEKSKRYKSMIEKLYNASV- 117
T + D ++A + + SL++ + L ++ K S++ K +
Sbjct: 271 TTRFKQ--------VTDF---LSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQ 316
Query: 118 -LSPAIKYCG--VIGFKNGSLIV-FYRIILDRRKIPRSIGNVEEVVKNILVDEITSRKAV 173
L + + S+I R L + K++ D++T+
Sbjct: 317 DLPREVLTTNPRRL-----SIIAESIRDGLATW----------DNWKHVNCDKLTTIIES 361
Query: 174 AFKNIKVDENDIHIKRYFGVSLASLTNKED-NVSSEVQS---EDFTSSSNLDDTNRIVTL 229
+ ++ E ++ F L+ ++ + + S D D +V
Sbjct: 362 SLNVLEPAE----YRKMF-DRLSVF--PPSAHIPTILLSLIWFDVIK----SDVMVVVN- 409
Query: 230 QSHSSSPDTPRPSSPNSKRKYSTSHIQRKVTPNSDPSSLETETTLLDMHTSTVPPNKAVF 289
+ H S +P + S I ++ + +H S
Sbjct: 410 KLHKYSLVEKQPK----ESTISIPSIYLELKVKLE--------NEYALHRS--------- 448
Query: 290 GSFTILDKPHFGDVFTSVATSKPPLEN-INEKIRITPSTNQPRKRTSPIANKHAGLIETA 348
I+D + F S P L+ I H IE
Sbjct: 449 ----IVDHYNIPKTFDSDDLIPPYLDQYFYSHI-----------------GHHLKNIEHP 487
Query: 349 NDEPVFRETDLD----DKMLRHSPLESFAHNSLLDM------YKPMMEEDEE 390
+FR LD ++ +RH A S+L+ YKP + +++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Score = 41.0 bits (95), Expect = 0.004
Identities = 41/317 (12%), Positives = 83/317 (26%), Gaps = 97/317 (30%)
Query: 1155 YHDSGFLMIQKQGQWGKLCMNQINNFIMKTLKWK-ISDLGKAICKSMTFRDLNEIEAVAD 1213
+H F + Q Q+ + + F+ K + D+ K+I +++ I +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFV-DNFDCKDVQDMPKSILSK---EEIDHI--IMS 57
Query: 1214 PSTDDSIYYELSMNAINSSAATKSALLFQKTKCSQKQVVAVNCSSLECGIRPQANNIWGS 1273
LF Q+++V
Sbjct: 58 KDAVSGTLR-----------------LFWTLLSKQEEMVQ-------------------- 80
Query: 1274 VNLTRSMRHSRIVGGGNARLGSWPWQAALYKEGEFQC-GATLISDQW------LLSAGHC 1326
+ V ++ + + K + ++++ + L +
Sbjct: 81 ----------KFVEEVLRI--NYKFLMSPIKT---EQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1327 FYRAQDDYWVARLGTLRRGTKLPSPYEQLRPISKIILHPQYVDAGF---------INDIS 1377
F Y V+RL KL +LRP +++ G
Sbjct: 126 F----AKYNVSRLQPY---LKLRQALLELRPAKNVLIDG---VLGSGKTWVALDVCLSYK 175
Query: 1378 ILKMKTPFSNYVRPICLPHPNTPLTD----GTLCTVVGWGQLFEIGRVFPDTLQEVQLPI 1433
+ + + L + N+P T L Q+ D ++L I
Sbjct: 176 VQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLRI 227
Query: 1434 ISTAECRKRTLFLPLYR 1450
S +R L Y
Sbjct: 228 HSIQAELRRLLKSKPYE 244
Score = 32.9 bits (74), Expect = 1.2
Identities = 45/317 (14%), Positives = 88/317 (27%), Gaps = 102/317 (32%)
Query: 10 RYKHSGSSGSSSWILWGPNSSKKSQKSKPSQKC---CSVLLASVIFLVLLLVITIAALAI 66
+KH ++ I SS + +K SV S I L++
Sbjct: 346 NWKHVNCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSA-------HIPTILLSL 394
Query: 67 YMGVELIFDSSFRVTAGDSYNPSLENSTSNLYKEKSKRYKSMIEKLYNASVLSPAIKYCG 126
++I V L + L +++ K I +Y ++
Sbjct: 395 IWF-DVIKSDVMVVVN------KLHKYS--LVEKQPKESTISIPSIY--------LELKV 437
Query: 127 VIGFKNGSLIVFYRIILDRRKIPRSIGNVEEVVKNILVDEITSRKAVAFKNIKVDENDIH 186
K + +R I+D IP++ + ++ D +
Sbjct: 438 ----KLENEYALHRSIVDHYNIPKTFDS---------------------DDLIPPYLDQY 472
Query: 187 IKRYFGVSLASLTNKEDNVSSEVQSEDFTSSSN--LDDT---NRIVTLQSHSSSPDTPRP 241
+ G L ++ E T LD +I H S+
Sbjct: 473 FYSHIGHHLKNIE----------HPERMTLFRMVFLDFRFLEQKIR----HDSTAWNASG 518
Query: 242 SSPNS---KRKYSTSHIQRKVTPNSDPSSLETETTLLDM------------HTSTV---- 282
S N+ + Y +I +DP +LD +T +
Sbjct: 519 SILNTLQQLKFYK-PYICD-----NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 283 -PPNKAVFG-SFTILDK 297
++A+F + + +
Sbjct: 573 MAEDEAIFEEAHKQVQR 589
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins,
respiratory protein, hexagonal bilayer, dihedral D6
symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP:
b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 64.1 bits (155), Expect = 3e-11
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 1013 CNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYECEWCSPGQYIC-PN 1071
+ D L K +E E C ++ C +
Sbjct: 11 IERTNKITTSISHVESLLDDRLDP-----KRIRKAGSLRHRVEELEDPSCDEHEHQCGGD 65
Query: 1072 SRVCIERTRLCDGIKDCPLGDDEKQC 1097
CI + +CDG DC G+DEK C
Sbjct: 66 DPQCISKLFVCDGHNDCRNGEDEKDC 91
Score = 54.1 bits (129), Expect = 7e-08
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 12/128 (9%)
Query: 978 ERNQTEFHLSVNRSECEMNS----SFRCG--NGECVSIGSKCNQLVDCADGSDEKNCSCA 1031
+R + L E E S +CG + +C+S C+ DC +G DEK+C+
Sbjct: 35 KRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLP 94
Query: 1032 DFLKSQFLTRKICDGIID-CWDFSDE-YECEWCSPGQYICPNSRVCIERTRLCDGIKDCP 1089
+F+ D D C E + S + + D
Sbjct: 95 TKAGDKFI----GDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDED 150
Query: 1090 LGDDEKQC 1097
+
Sbjct: 151 ESEVSMPA 158
Score = 52.9 bits (126), Expect = 1e-07
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 1530 NETQMSRQHVCNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCG--NGECVSIGSK 1587
+ + + R + RV D C+ + +CG + +C+S
Sbjct: 22 SHVESLLDDRLDPKRIR-KAGSLRHRVEE----LEDPSCDEHE-HQCGGDDPQCISKLFV 75
Query: 1588 CNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIID-CWDFSDE 1631
C+ DC +G DEK+C+ +F+ D D C E
Sbjct: 76 CDGHNDCRNGEDEKDCTLPTKAGDKFI----GDVCFDHCTKRRPE 116
Score = 36.4 bits (83), Expect = 0.040
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 19/91 (20%)
Query: 1555 RVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDE-KNCSCADFLKSQF 1613
++ + + + S + + + +E ++ SC + +
Sbjct: 9 KLIERTNKITTSISHVESLL-----DDRLDPKRIRKAGSLRHRVEELEDPSCDE---HEH 60
Query: 1614 L----------TRKICDGIIDCWDFSDEYEC 1634
+CDG DC + DE +C
Sbjct: 61 QCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 91
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 56.5 bits (137), Expect = 2e-10
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 991 SECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCAD 1032
C F+C +G C+ C+ DC D SDE + +C +
Sbjct: 3 HSCSSTQ-FKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 56.5 bits (137), Expect = 2e-10
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1568 CEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCAD 1607
C F+C +G C+ C+ DC D SDE + +C +
Sbjct: 5 CSSTQ-FKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
CS Q+ C + R CI CDG DC DE
Sbjct: 5 CSSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHA 39
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 999 FRCGNGECVSIGSKCNQLVDCADGSDEKNCS 1029
F C +GEC+ +C+ DC D SDE+NC+
Sbjct: 7 FHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1574 FRCGNGECVSIGSKCNQLVDCADGSDEKNCS 1604
F C +GEC+ +C+ DC D SDE+NC+
Sbjct: 7 FHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 46.0 bits (110), Expect = 9e-07
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
CS ++ C + CI + CDG DC DE+ C
Sbjct: 2 CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENC 36
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 56.2 bits (136), Expect = 3e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 1562 ECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCA 1606
+C G+ F C N C+ KC+ DC D SDE C
Sbjct: 5 QCQPGE------FACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 55.8 bits (135), Expect = 3e-10
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 992 ECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCA 1031
+C+ F C N C+ KC+ DC D SDE C
Sbjct: 5 QCQPGE-FACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 47.3 bits (113), Expect = 4e-07
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCI 1098
C PG++ C NSR CI+ CDG DC DE +
Sbjct: 6 CQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPAL 41
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein;
HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 55.4 bits (134), Expect = 5e-10
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 1563 CSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNC 1603
+CE + F+C N C+ +C++ DC D SDE +C
Sbjct: 3 GPAKECEKDQ-FQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 53.8 bits (130), Expect = 2e-09
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 991 SECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNC 1028
ECE + F+C N C+ +C++ DC D SDE +C
Sbjct: 6 KECEKDQ-FQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 45.7 bits (109), Expect = 1e-06
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
C Q+ C N R CI CD DC DE C
Sbjct: 8 CEKDQFQCRNER-CIPSVWRCDEDDDCLDHSDEDDC 42
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 54.7 bits (132), Expect = 9e-10
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIET 1105
C P + CP + VC+ LCDG KDC G DE T
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 47.4 bits (113), Expect = 3e-07
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1563 CSDGKCEMNSSFRCGNG-ECVSIGSKCNQLVDCADGSDEKNCSC 1605
C +S F C CV C+ DCADG+DE +
Sbjct: 2 SEGKTCGPSS-FSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 45.4 bits (108), Expect = 2e-06
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 997 SSFRCGNG-ECVSIGSKCNQLVDCADGSDEKNCSC 1030
SSF C CV C+ DCADG+DE +
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 37.0 bits (86), Expect = 0.002
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 1044 CDGIIDCWDFSDEYECEWCSPG 1065
CDG DC D +DE C
Sbjct: 27 CDGDKDCADGADESIAAGCLYN 48
Score = 31.2 bits (71), Expect = 0.23
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 1619 CDGIIDCWDFSDEYEC 1634
CDG DC D +DE
Sbjct: 27 CDGDKDCADGADESIA 42
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 53.2 bits (128), Expect = 3e-09
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
CS G + C N C+ + C+G+ DC DE C
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 51.6 bits (124), Expect = 1e-08
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 1563 CSDGKCEMNSSFRCGNG-ECVSIGSKCNQLVDCADGSDEKNC 1603
D KC + F CGN +C+ CN + DC + +DE NC
Sbjct: 2 SQDVKCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 49.3 bits (118), Expect = 6e-08
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 992 ECEMNSSFRCGNG-ECVSIGSKCNQLVDCADGSDEKNC 1028
+C + F CGN +C+ CN + DC + +DE NC
Sbjct: 6 KCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 35.8 bits (83), Expect = 0.004
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 1540 CNGHRCPLGE--------CLPKARVCNGYMECSDGKCEMNSSFRCG 1577
+C LG CLP+ CNG +C + E N CG
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN----CG 43
Score = 33.9 bits (78), Expect = 0.016
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 1041 RKICDGIIDCWDFSDEYEC 1059
C+G+ DC + +DE C
Sbjct: 24 LLHCNGVDDCGNQADEDNC 42
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 52.7 bits (127), Expect = 5e-09
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 1563 CSDGKCEMNSSFRCGNGE-CVSIGSKCNQLVDCADGSDEKNCSC 1605
C F+C +G C++ +C+ + DC D SDE C
Sbjct: 2 AMVLNCTSAQ-FKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 51.2 bits (123), Expect = 1e-08
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
C+ Q+ C + CI CDG+ DC DE C
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 50.0 bits (120), Expect = 3e-08
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 999 FRCGNGE-CVSIGSKCNQLVDCADGSDEKNCSC 1030
F+C +G C++ +C+ + DC D SDE C
Sbjct: 12 FKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 40.8 bits (96), Expect = 8e-05
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 14/53 (26%)
Query: 1022 GSDEKNCSCADFLKSQF---------LTRKICDGIIDCWDFSDEYECEWCSPG 1065
G+ NC+ +QF +R CDG+ DC D SDE C PG
Sbjct: 1 GAMVLNCT-----SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 52.9 bits (127), Expect = 9e-09
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIETRSPSSTYLRNAMQGRS 1121
C P + CP + VC+ LCDG KDC G DE T S S + ++ R
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRL 68
Query: 1122 DVPIRVHQ 1129
+R +
Sbjct: 69 ASHLRKLR 76
Score = 49.9 bits (119), Expect = 9e-08
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 13/77 (16%)
Query: 1022 GSDEKNCSCADFLKSQFL---------TRKICDGIIDCWDFSDEYECEWCSPGQYICPNS 1072
GS + +C S F R +CDG DC D +DE C +
Sbjct: 1 GSKLEGKTCGP---SSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSG 57
Query: 1073 RVCIERTRL-CDGIKDC 1088
E R+
Sbjct: 58 SGSTEELRVRLASHLRK 74
Score = 49.1 bits (117), Expect = 2e-07
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 1563 CSDGKCEMNSSFRCGN-GECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDG 1621
C +S F C CV C+ DCADG+DE + + + +
Sbjct: 4 LEGKTCGPSS-FSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLY--NSTGSGSGSGS 60
Query: 1622 IIDCW 1626
+
Sbjct: 61 TEELR 65
Score = 37.1 bits (86), Expect = 0.003
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 1540 CNGHRCPLGE--------CLPKARVCNGYMECSDG-------KCEMNS-SFRCGNGECVS 1583
G C C+P+ +C+G +C+DG C NS G+G
Sbjct: 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE 63
Query: 1584 IGSKCNQLVDCAD 1596
+ + +
Sbjct: 64 LRVRLASHLRKLR 76
Score = 33.3 bits (76), Expect = 0.081
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 12/47 (25%)
Query: 1597 GSDEKNCSCADFLKSQFL---------TRKICDGIIDCWDFSDEYEC 1634
GS + +C S F R +CDG DC D +DE
Sbjct: 1 GSKLEGKTCGP---SSFSCPGTHVCVPERWLCDGDKDCADGADESIA 44
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins,
respiratory protein, hexagonal bilayer, dihedral D6
symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP:
b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 55.7 bits (133), Expect = 2e-08
Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 9/148 (6%)
Query: 959 IPILTKVYTKVSKTNSTSKERNQTEFHLSVNRSECEMNSS------FRCG--NGECVSIG 1010
I L ++ K+ +++ + F ++ ++ + F+CG EC+S
Sbjct: 12 IIRLDRIIEKLRTKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDL 71
Query: 1011 SKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDE-YECEWCSPGQYIC 1069
C+ DC + DE C + C D + +
Sbjct: 72 LVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKF 131
Query: 1070 PNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
+R+ + + +
Sbjct: 132 FTARIWLRALVESELERHGENVTSSFNA 159
Score = 51.0 bits (121), Expect = 8e-07
Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 1548 GECLPKARVCNGYMECSDGKCEMNSSFRCG--NGECVSIGSKCNQLVDCADGSDEKNCSC 1605
ARV + CE +F+CG EC+S C+ DC + DE C
Sbjct: 37 FVSEIDARVT----KIEGTHCE-KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC 91
Query: 1606 ADFLKSQFLTRKICDGIIDCWDFSDEYEC 1634
+ C D
Sbjct: 92 DTSVVKAGNVFSGTSTWHGCLAREDHVTR 120
Score = 48.4 bits (114), Expect = 5e-06
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 10/121 (8%)
Query: 1522 ASEYNMMRNETQMSRQHVCNGH--RCPL--GECLPKARVCNGYMECSDGKCEMNSSFRCG 1577
+ + C +C EC+ VC+G+ +C + E C
Sbjct: 35 EHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV--CD 92
Query: 1578 NGECVSIGSKCNQLV--DCADGSDEKNCSCADFLKSQ--FLTRKICDGIIDCWDFSDEYE 1633
+ C D K + F R +++
Sbjct: 93 TSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGEN 152
Query: 1634 C 1634
Sbjct: 153 V 153
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 48.0 bits (115), Expect = 2e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINL 1100
C ++ C +CI CDG DC DEK C +
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 47.3 bits (113), Expect = 3e-07
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 999 FRC-GNGECVSIGSKCNQLVDCADGSDEKNC 1028
F+C +G C+ + +C+ DC D SDEK+C
Sbjct: 9 FQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 47.3 bits (113), Expect = 3e-07
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1574 FRC-GNGECVSIGSKCNQLVDCADGSDEKNC 1603
F+C +G C+ + +C+ DC D SDEK+C
Sbjct: 9 FQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 35.7 bits (83), Expect = 0.004
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 1044 CDGIIDCWDFSDEYECE 1060
CDG DC D SDE CE
Sbjct: 24 CDGDTDCMDSSDEKSCE 40
Score = 34.6 bits (80), Expect = 0.010
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 1619 CDGIIDCWDFSDEYEC 1634
CDG DC D SDE C
Sbjct: 24 CDGDTDCMDSSDEKSC 39
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 45.4 bits (108), Expect = 1e-06
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 1062 CSPGQYICPN-SRVCIERTRLCDGIKDCPLGDDEKQCIN 1099
C + C S CI + CDG DC G+DE+ C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 45.4 bits (108), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 999 FRCGNG--ECVSIGSKCNQLVDCADGSDEKNCS 1029
CG +C+ + +C+ DC G DE+NC
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 45.4 bits (108), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1574 FRCGNG--ECVSIGSKCNQLVDCADGSDEKNCS 1604
CG +C+ + +C+ DC G DE+NC
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 32.3 bits (74), Expect = 0.067
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 1548 GECLPKARVCNGYMECSDGKCEMNSSFRCGN 1578
+C+P + C+G +C G+ E N CGN
Sbjct: 13 TQCIPVSWRCDGENDCDSGEDEEN----CGN 39
Score = 30.0 bits (68), Expect = 0.46
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 1044 CDGIIDCWDFSDEYEC 1059
CDG DC DE C
Sbjct: 22 CDGENDCDSGEDEENC 37
Score = 30.0 bits (68), Expect = 0.46
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 1619 CDGIIDCWDFSDEYEC 1634
CDG DC DE C
Sbjct: 22 CDGENDCDSGEDEENC 37
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1
h.1.32.1
Length = 217
Score = 49.9 bits (118), Expect = 2e-06
Identities = 17/87 (19%), Positives = 22/87 (25%), Gaps = 13/87 (14%)
Query: 1013 CNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYECEWCSPGQYICPNS 1072
+L D + ++ I E C + C
Sbjct: 17 AKKLHDIEEEYNKLTHDVD------------KKTIRQLKARISNLEEHHCDEHESECRGD 64
Query: 1073 RV-CIERTRLCDGIKDCPLGDDEKQCI 1098
CI CDG KDC G DE
Sbjct: 65 VPECIHDLLFCDGEKDCRDGSDEDPET 91
Score = 49.9 bits (118), Expect = 2e-06
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 1562 ECSDGKCEMNSSFRCGN--GECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKIC 1619
+ C+ + C EC+ C+ DC DGSDE +C+ + +
Sbjct: 48 NLEEHHCDEHE-SECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGL 106
Query: 1620 DGIIDCWDFSDEYEC 1634
C D + ++
Sbjct: 107 ATWTSCEDLNPDHAI 121
Score = 49.5 bits (117), Expect = 2e-06
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 999 FRCGN--GECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDE 1056
C EC+ C+ DC DGSDE +C+ + + C D + +
Sbjct: 59 SECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPD 118
Query: 1057 YEC-EWCSPGQYICPNSRVCIERTRLCD 1083
+ + + +RV + T +
Sbjct: 119 HAIVTITAAHRKSFFPNRVWLRATLSYE 146
Score = 39.5 bits (91), Expect = 0.004
Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 17/112 (15%)
Query: 1535 SRQHVCNGHRCP---------LGECLPKARVCNGYMECSDG---KCEMNSSFRCGNGECV 1582
+R H C + EC+ C+G +C DG E S G
Sbjct: 44 ARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSY 103
Query: 1583 SIGSKCNQLVDCADGSDEKNCSCADFLK--SQFLTRKICDGIIDCWDFSDEY 1632
+ + C D + + S F R + ++
Sbjct: 104 TGLATWTS---CEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDH 152
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Length = 47
Score = 45.2 bits (107), Expect = 2e-06
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 1062 CSPGQYIC----PNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
C PGQ+ C C + LCDG DC G DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 44.8 bits (106), Expect = 3e-06
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 991 SECEMNSSFRCG-----NGECVSIGSKCNQLVDCADGSDEKNC 1028
S C FRC +GEC C+ DC DG DE C
Sbjct: 3 SRCPPGQ-FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 44.4 bits (105), Expect = 4e-06
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 1574 FRCG-----NGECVSIGSKCNQLVDCADGSDEKNC 1603
FRC +GEC C+ DC DG DE C
Sbjct: 10 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 30.9 bits (70), Expect = 0.21
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 1044 CDGIIDCWDFSDEYEC 1059
CDG DC D DE+ C
Sbjct: 29 CDGHPDCDDGRDEWGC 44
Score = 30.9 bits (70), Expect = 0.21
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 1619 CDGIIDCWDFSDEYEC 1634
CDG DC D DE+ C
Sbjct: 29 CDGHPDCDDGRDEWGC 44
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin,
3-10 helix, calcium binding, membrane protein; NMR
{Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 44.8 bits (106), Expect = 3e-06
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 1563 CSDGKCEMNSSFRC-----GNGECVSIGSKCNQLVDCADGSDEKNC 1603
G C FRC +GEC C+ DC DG DE C
Sbjct: 2 SEFGSCPPGQ-FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 44.8 bits (106), Expect = 3e-06
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 1062 CSPGQYIC----PNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
C PGQ+ C C + LCDG DC G DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 42.9 bits (101), Expect = 1e-05
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 997 SSFRC-----GNGECVSIGSKCNQLVDCADGSDEKNC 1028
FRC +GEC C+ DC DG DE C
Sbjct: 10 GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 39.4 bits (92), Expect = 3e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCG 1577
C+ GEC P+ +C+G+ +C DG+ E CG
Sbjct: 14 CSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG----CG 47
Score = 30.5 bits (69), Expect = 0.32
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 1044 CDGIIDCWDFSDEYEC 1059
CDG DC D DE+ C
Sbjct: 31 CDGHPDCDDGRDEWGC 46
Score = 30.5 bits (69), Expect = 0.32
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 1619 CDGIIDCWDFSDEYEC 1634
CDG DC D DE+ C
Sbjct: 31 CDGHPDCDDGRDEWGC 46
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system;
HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 48.8 bits (115), Expect = 1e-05
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Query: 1017 VDCADG--SDEKNCSCADFLKSQFLTR----------KICDG-IIDCWDFSDEYEC--EW 1061
V C S+ +C ++ R IC G I D S C +
Sbjct: 7 VTCQLSNWSEWTDCFP--CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQA 64
Query: 1062 CSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIETRSPSSTYLRNA 1116
+ C + C++R +C+G +DC G DE C ++ I+ + +
Sbjct: 65 QCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGS 119
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 991 SECE--MNSSFRCGNGECVSI--GSKCN-QLVDCADGSDEKNCSCADFLKSQFL------ 1039
++C + +R + + G+ C+ + D A S C F
Sbjct: 18 TDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGR 77
Query: 1040 ---TRKICDGIIDCWDFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDE 1094
+C+G DC D SDE +CE C I ++ + +D
Sbjct: 78 CLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYE-PIPGSQKAALGYNILTQEDA 134
Score = 35.3 bits (80), Expect = 0.18
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 1562 ECSDGKCEMNSSFRCGNGECVSI--GSKCN-QLVDCADGSDEKNCSCADFLKSQFL---- 1614
+C C+ + +R + + G+ C+ + D A S C F
Sbjct: 19 DCFP--CQ-DKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKET 75
Query: 1615 -----TRKICDGIIDCWDFSDEYEC 1634
+C+G DC D SDE +C
Sbjct: 76 GRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 32.3 bits (72), Expect = 1.8
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 1541 NGHRC--PLGECLPK--ARVCNGYMECSDGKCEMNSSFRCG-NGECVSIGSKCNQLVDCA 1595
G C + + + C +C F+C G C+ CN DC
Sbjct: 40 GGTICSGDIWDQASCSSSTTCVRQAQCGQD-------FQCKETGRCLKRHLVCNGDQDCL 92
Query: 1596 DGSDEKNCSCA 1606
DGSDE +C
Sbjct: 93 DGSDEDDCEDV 103
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/227 (14%), Positives = 60/227 (26%), Gaps = 35/227 (15%)
Query: 1299 QAALYKEGEFQCGATLISD------QWLLSAGHCFYRAQDD------YWVARLGTLRRGT 1346
A K G C +L+++ + L+A HC YW + T R
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPN 84
Query: 1347 KLPSPYEQLRPISKIILHPQYVDAGFINDISILKMKTPFSNYVRPICLPHPNTPLTDGTL 1406
S +S+ +D ++L++ + + +
Sbjct: 85 TPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLF-WAGWDRRDQNYPG 143
Query: 1407 CTVVGWGQLFEIGRVFPDTLQEVQLPIISTAECRKRTLFLPLYRVTENMFCAGFERGGRD 1466
+ V IS + + T ++ GG
Sbjct: 144 AIAIHHPN--------------VAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGG-- 187
Query: 1467 ACLGDSGGPLMCQEPDGRWSLMGVTSNGYG-CA--RANRPGVYTKVS 1510
S G + + R +G G C+ NR Y +V
Sbjct: 188 VTEPGSSGSPIYSP-EKRV--LGQLHGGPSSCSATGTNRSDQYGRVF 231
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 40.2 bits (93), Expect = 0.003
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 1000 RCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYEC 1059
+ +G C CN DG D + C + CWD+ +
Sbjct: 12 KARDGVC---DEACNSHACQWDGGDCSLTMENPWAN--------CSSPLPCWDYINNQCD 60
Query: 1060 EWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQC 1097
E C+ + + N C ++ C K C + C
Sbjct: 61 ELCNTVECLFDNFE-CQGNSKTCKYDKYCADHFKDNHC 97
Score = 31.7 bits (71), Expect = 1.7
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 13/67 (19%)
Query: 1542 GHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEK 1601
G C C K DG C+ C + C G C+ ++ +
Sbjct: 1 GATCLSQYCADK---------ARDGVCDEA----CNSHACQWDGGDCSLTMENPWANCSS 47
Query: 1602 NCSCADF 1608
C D+
Sbjct: 48 PLPCWDY 54
Score = 31.3 bits (70), Expect = 2.2
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 15/70 (21%)
Query: 1563 CSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGI 1622
C C + +G C CN DG D + C
Sbjct: 4 CLSQYCAD----KARDGVC---DEACNSHACQWDGGDCSLTMENPWAN--------CSSP 48
Query: 1623 IDCWDFSDEY 1632
+ CWD+ +
Sbjct: 49 LPCWDYINNQ 58
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 39.8 bits (92), Expect = 0.004
Identities = 17/123 (13%), Positives = 30/123 (24%), Gaps = 9/123 (7%)
Query: 1295 SWPWQA-----ALYKEGEFQCGATLISDQWLLSAGHCFYRAQDDYWVARLGTLRRGTKLP 1349
+ + G F ++ LL+ H D A +
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGD-PHALKAFPSAINQDN 74
Query: 1350 SPYEQLRPISKIILHPQYVDAGFINDISILKMKTPFSNYVRPICLPHPNTPLTDGTLCTV 1409
P +I + D + S + V+P + N TV
Sbjct: 75 YPNGGFTA-EQITKYSGEGDLAIV-KFSPNEQNKHIGEVVKPATMS-NNAETQTNQNITV 131
Query: 1410 VGW 1412
G+
Sbjct: 132 TGY 134
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate
IMMU system, blood, membrane, cytolysin, immune SYST;
HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB:
4a5w_B* 4e0s_B*
Length = 913
Score = 40.2 bits (93), Expect = 0.007
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSD 1599
G C L + C C + + + FRC +G C++ +CN DC D SD
Sbjct: 91 FGGQPCT--APLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSD 148
Query: 1600 EKNCSC 1605
E++C
Sbjct: 149 ERDCGR 154
Score = 33.3 bits (75), Expect = 0.91
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 1058 ECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEKQCINLFPIETR 1106
+ E +S CI R C+G DC DE+ C + TR
Sbjct: 113 KIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTR 161
Score = 31.8 bits (71), Expect = 2.2
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 991 SECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDC 1050
E + + FRC +G C++ +CN DC D SDE++C +
Sbjct: 115 EEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKA--------------VCT 160
Query: 1051 WDFSDEYECEWCSPGQYICPNSR 1073
++ + G +
Sbjct: 161 RKYNPIPSVQLMGNGFHFLAGEP 183
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 39.7 bits (92), Expect = 0.010
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 1539 VCNGH-RCPLGECL----PKARVCNGYMECSDGKCEMNSSFRC-GNGECVS--------- 1583
VC+ C G+C+ ++ Y EC D C C G+G+C
Sbjct: 494 VCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDW 553
Query: 1584 IGSKCNQLVDCADGSDEKNCSC 1605
G CN C
Sbjct: 554 TGYYCNCTTRTDTCMSSNGLLC 575
Score = 35.1 bits (80), Expect = 0.22
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 3/121 (2%)
Query: 979 RNQTEFHLSVNRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQF 1038
R++ E + E ++ + C N E + C L S + +
Sbjct: 352 RSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE 411
Query: 1039 LTRKICD-GIIDCWDFSDEYECEWCSPGQYICPNSRVCIE-RTRLCDGIKDCPLGDDEKQ 1096
+ I G D ++C+ C+ PNS C G+ C G Q
Sbjct: 412 KSFTIKPVGFKDSLIVQVTFDCD-CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQ 470
Query: 1097 C 1097
C
Sbjct: 471 C 471
Score = 35.1 bits (80), Expect = 0.25
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 1537 QHVCNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCAD 1596
+ + P+G +C+ +S RC NG C C
Sbjct: 409 EKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCR----CGP 464
Query: 1597 GSDEKNCSC 1605
G C C
Sbjct: 465 GWLGSQCEC 473
Score = 32.0 bits (72), Expect = 2.2
Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 1519 NMAASEYNMMRNETQMSRQHVCNG------HRCPLGECLPKARVCNGYMECSDGKCEMNS 1572
+ Y +R++ ++ + + C E +P + C G + +
Sbjct: 342 QLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEA 401
Query: 1573 SFR-CGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDC 1625
R C + S K D +C CA +++ + + +G
Sbjct: 402 KVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTF 455
Score = 31.6 bits (71), Expect = 2.3
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 1540 CNGHRCPLGECLPK--ARVCNGYMECSDGKCEMNSSF---RCGNG-ECVSIGSKCNQLVD 1593
+ EC P+ VC+ EC G+C +SS G EC +
Sbjct: 476 EDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEM 535
Query: 1594 CADGS--DEKNCSCAD 1607
C+ +C C
Sbjct: 536 CSGHGQCSCGDCLCDS 551
Score = 31.2 bits (70), Expect = 3.5
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 18/72 (25%)
Query: 1537 QHVCNGHR-CPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCA 1595
C + C EC + + C + + +
Sbjct: 605 PDACTFKKEC--VECKK----FDRGALHDENTCNRYCRDEIESVKEL-----------KD 647
Query: 1596 DGSDEKNCSCAD 1607
G D NC+ +
Sbjct: 648 TGKDAVNCTYKN 659
Score = 30.4 bits (68), Expect = 6.7
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADGSD 1599
C P NG G C + EC + +Q +C+
Sbjct: 437 CQAQAEPNSHR-----CNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREG 491
Query: 1600 EKNCS 1604
+ CS
Sbjct: 492 QPVCS 496
Score = 30.1 bits (67), Expect = 7.4
Identities = 21/124 (16%), Positives = 32/124 (25%), Gaps = 23/124 (18%)
Query: 989 NRSECEMNSSFRC-GNGECVS---------IGSKCNQLVDCADGSDEKNCSCADFLKSQF 1038
+ C C G+G+C G CN C+
Sbjct: 524 DDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSG------ 577
Query: 1039 LTRKICD-GIIDCWD--FSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLGDDEK 1095
R C+ G C + CE C C + C+E + G +
Sbjct: 578 --RGKCECGSCVCIQPGSYGDT-CEKCPTCPDACTFKKECVECKKFDRG-ALHDENTCNR 633
Query: 1096 QCIN 1099
C +
Sbjct: 634 YCRD 637
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 38.5 bits (89), Expect = 0.016
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 992 ECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCW 1051
EC+ + C N C + K C G + C + + C +
Sbjct: 224 ECDCGTPENCQNECCDAATCKLKSGSQCGHGDCCEQCKFSK-------SGTECRASMSEC 276
Query: 1052 DFSDEYECEWCSPGQYICPNSRVCIERTRLCDGIKDCPLG---DDEKQCINLFPIETR-S 1107
D + E C+ CP D C G QC +LF + +
Sbjct: 277 DPA-----EHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYDLFGADVYEA 331
Query: 1108 PSSTYLRN 1115
S + RN
Sbjct: 332 EDSCFERN 339
Score = 31.2 bits (70), Expect = 3.6
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 1534 MSRQHVCNGHRCPLGECLPKARVCNGYM-EC------SDGKCEMNSSFRCGNGECVSIGS 1586
C R + EC P A C G EC +G+ +++ C NG C +
Sbjct: 263 SKSGTEC---RASMSECDP-AEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYH 318
Query: 1587 KCNQLVDCADGSDEKNCSCADF 1608
+C L E SC +
Sbjct: 319 QCYDL--FGADVYEAEDSCFER 338
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 36.2 bits (83), Expect = 0.11
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 1539 VCNGH-RCPLGECLPKARVCNGYM------ECSDGKCEMNSSFRC---GNGECVS----- 1583
+C+G C G+CL G + EC CE + C G G C
Sbjct: 483 ICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRC 542
Query: 1584 ----IGSKCNQLVDCADGSDEKNCSC 1605
GS C + + C
Sbjct: 543 HPGFEGSACQCERTTEGCLNPRRVEC 568
Score = 31.6 bits (71), Expect = 2.3
Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 14/143 (9%)
Query: 957 NGIPILTKVYTKVSKTNSTSKERNQTEFHLSVNRSECEMN-SSFRCGNGECVSIGSKCNQ 1015
N + ++ Y K+S ++ S C + G+C G + N
Sbjct: 329 NVVQLIKNAYNKLSSRVFLDHNALPDTLKVTY-DSFCSNGVTHRNQPRGDCD--GVQINV 385
Query: 1016 LVDCADGSDEKNCSCADFLKSQFLT-RKICDGIIDCWDFSDEYECEWCSPGQYICPNSRV 1074
+ + + + ++ Q R + I + EC + +
Sbjct: 386 PITF-----QVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQ----SRDRSL 436
Query: 1075 CIERTRLCDGIKDCPLGDDEKQC 1097
C + L GI C G K C
Sbjct: 437 CHGKGFLECGICRCDTGYIGKNC 459
Score = 31.6 bits (71), Expect = 2.7
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSF--------RCGNGECVSIGSKCNQL 1591
C R G P+ C+G C CE +S + C S C +
Sbjct: 551 CQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYIS-CAEC 609
Query: 1592 VDCADGSDEKNCSCA 1606
+ G KNCS A
Sbjct: 610 LKFEKGPFGKNCSAA 624
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain,
chitin-binding, GERM agglutinin, chitin-binding protein;
HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A*
2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A
1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A*
Length = 171
Score = 33.8 bits (77), Expect = 0.22
Identities = 13/70 (18%), Positives = 17/70 (24%), Gaps = 11/70 (15%)
Query: 1540 CNGHRCPLGECLPKARVCNGYMECSDGKCEMN--SSFRCGNGECVSI--GSKCNQLVDCA 1595
G CP C + G+ C S + C G C C
Sbjct: 93 AGGKLCPNNLCCSQ----WGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCC- 147
Query: 1596 DGSDEKNCSC 1605
S +C
Sbjct: 148 --SKWGSCGI 155
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 34.9 bits (79), Expect = 0.28
Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 10/152 (6%)
Query: 868 SSNSSNMLNFNENRTSDDNDNKNKAMAQNLLTQMLE-KYNRVITNDSSVSSLKYLIDQIS 926
+ + L N +S+ N ++ L KY S KYL S
Sbjct: 868 KAVLGDRLLLTANVSSE---NNTPRTSKTTFQLELPVKYAVYTVVSSHEQFTKYLNFSES 924
Query: 927 HQHLKHTHQHN-PDTNISTKAIPSSFNF---NQVNGIPILTKVYTKVSKTNSTSKERNQT 982
+ H H N+ + +P S NF ++N + V + S +
Sbjct: 925 EEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVWMDVEVSHPQNPSLRCSSEKI 984
Query: 983 EFHLSVNRSECEMNSSFRCGNGECVSIGSKCN 1014
S + + N C C+ +C+
Sbjct: 985 APPASDFLAHIQKNPVLDCSIAGCLRF--RCD 1014
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 34.2 bits (78), Expect = 0.29
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 11/123 (8%)
Query: 1295 SWPWQA-----ALYKEGEFQCGATLISDQWLLSAGHCFYRAQDD-YWVARLGTLRRGTKL 1348
+ + G F ++ LL+ H D + + +
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNY 75
Query: 1349 PSPYEQLRPISKIILHPQYVDAGFINDISILKMKTPFSNYVRPICLPHPNTPLTDGTLCT 1408
P+ +I + D + S + V+P + N T
Sbjct: 76 PNGGFT---AEQITKYSGEGDLAIV-KFSPNEQNKHIGEVVKPATMS-NNAETQVNQNIT 130
Query: 1409 VVG 1411
V G
Sbjct: 131 VTG 133
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 31.5 bits (72), Expect = 0.35
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 25/96 (26%)
Query: 992 ECEMNSSFRCGNGECV-SIGS-KCNQLVDCADG-----SDEKNCS----CADFLKSQFLT 1040
EC ++ CG G+CV + G +C C +G KNC C
Sbjct: 5 ECRISPD-LCGRGQCVNTPGDFEC----KCDEGYESGFMMMKNCMDIDECQR-------D 52
Query: 1041 RKICDGIIDCWDFSDEYECEWCSPGQYICPNSRVCI 1076
+C G + C + Y CE C PG + PN CI
Sbjct: 53 PLLCRGGV-CHNTEGSYRCE-CPPGHQLSPNISACI 86
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain;
2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB:
1mvx_A
Length = 299
Score = 33.3 bits (76), Expect = 0.53
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 1005 ECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYEC-EWCS 1063
G C+ L C D ++ C C D L G + + YEC +CS
Sbjct: 63 PNFQSGCNCSSLGGC-DLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCS 121
Query: 1064 PGQYICPN--------SRVCIERTRLC 1082
CPN + I +T+
Sbjct: 122 CSME-CPNRVVQRGRTLPLEIFKTKEK 147
Score = 29.8 bits (67), Expect = 8.3
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 1580 ECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYEC 1634
G C+ L C D ++ C C D L G + + YEC
Sbjct: 63 PNFQSGCNCSSLGGC-DLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYEC 116
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 31.6 bits (72), Expect = 0.53
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 31 KKSQKSKPSQKCCSVLLASVIFLVLLLVI 59
K Q +K ++ ++ +++ I
Sbjct: 76 VKYQSKARRKKIMIIICCVILGIIIASTI 104
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 33.5 bits (76), Expect = 0.70
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 1534 MSRQHVCNGHRCPLGECLPKARVCNGYM-EC------SDGKCEMNSSFRCGNGECVSIGS 1586
+ C R +C C G EC +G N+ C NG+C + +
Sbjct: 269 KGARAEC---RAAKDDCDLPEL-CTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIMTN 324
Query: 1587 KCNQLVDCADGSDEKNCSC 1605
+C L G SC
Sbjct: 325 QCIALRGP--GVKVSRDSC 341
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion;
HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 32.7 bits (74), Expect = 0.71
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 1545 CPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQL-VDCADGSDEKNC 1603
C + +C+G G C ++ + N EC + G +L C ++ C
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 1604 SC 1605
S
Sbjct: 146 SG 147
Score = 32.3 bits (73), Expect = 0.99
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 1533 QMSRQHVCNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLV 1592
+ Q + + +C+G +C G+C ++S + G C
Sbjct: 121 ECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSD---VPGKLIYGQYCECDT 177
Query: 1593 DCADGSDEKNCSC 1605
+ + + C
Sbjct: 178 INCERYNGQVCGG 190
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL clotting,
toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii
siamensis}
Length = 427
Score = 32.7 bits (74), Expect = 1.2
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 1534 MSRQHVCNGHRCPLGECLPKARVCNGYM-EC------SDGK-CEMNSSFRCGNGECVSIG 1585
+ VC R EC C G EC +GK C+ N + C NG+C +
Sbjct: 265 KTAGTVC---RRARDECDV-PEHCTGQSAECPRDQLQQNGKPCQNNRGY-CYNGDCPIMR 319
Query: 1586 SKCNQLVDCADGSDEKNCSCADFLKSQF 1613
++C L + +C + S +
Sbjct: 320 NQCISLFGSRANVAKDSCFQENLKGSYY 347
Score = 30.7 bits (69), Expect = 4.2
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 34/126 (26%)
Query: 988 VNRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFL-------T 1040
N C+ N + C NG+C + ++C L + +C + S +
Sbjct: 298 QNGKPCQNNRGY-CYNGDCPIMRNQCISLFGSRANVAKDSCFQENLKGSYYGYCRKENGR 356
Query: 1041 RKICD------GIIDCWD--FSDEYECEW-----------------CSPGQYICPNSRVC 1075
+ C G + C + ++ C C G+ +C N R C
Sbjct: 357 KIPCAPQDVKCGRLFCLNNSPRNKNPCNMHYSCMDQHKGMVDPGTKCEDGK-VCNNKRQC 415
Query: 1076 IERTRL 1081
++
Sbjct: 416 VDVNTA 421
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor,
immunity, signaling transferase; HET: NAG NDG; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3p11_A*
Length = 621
Score = 32.7 bits (73), Expect = 1.3
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 10/137 (7%)
Query: 966 YTKVSKTNSTSKERNQTEFHLSVNRSECEMNSSFRCGNGECVSIGSKCNQLVDCADGSDE 1025
Y + + + NR + + + + C S G C
Sbjct: 445 YHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQC------ 498
Query: 1026 KNCSCADFLKSQFLTRKICDGIIDCWDFSDEYECEWCSPGQYICPNSRVCIERTRLCDGI 1085
SC ++ + + +F+ E EC C P + C D
Sbjct: 499 --LSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSG--SDTC 554
Query: 1086 KDCPLGDDEKQCINLFP 1102
C D C++ P
Sbjct: 555 AQCAHFRDGPHCVSSCP 571
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 99 KEKSKRYKSMIEKLY---NASVLSPAIK 123
K+ K+ ++ + KLY +A L AIK
Sbjct: 19 KQALKKLQASL-KLYADDSAPAL--AIK 43
Score = 30.3 bits (67), Expect = 3.2
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 74 FDSSFRVTAGDSYNPSLE-NST 94
+S ++ A DS P+L +T
Sbjct: 25 LQASLKLYADDS-APALAIKAT 45
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Length = 501
Score = 31.8 bits (71), Expect = 1.9
Identities = 31/252 (12%), Positives = 61/252 (24%), Gaps = 20/252 (7%)
Query: 948 PSSFNFNQVNGIPILTKVYTKVSKTNSTSKERNQTEFHLSVNRSECEMNSS---FRCGNG 1004
P+ N + I++ + + + + + S C +
Sbjct: 130 PALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKI 189
Query: 1005 ECVSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDFSDEYEC-EWCS 1063
C +C+ SD + CA T + C F DE C + C
Sbjct: 190 ICAQ---QCSGRCRGKSPSDCCHNQCA-----AGCTGPRESDCLVCRKFRDEATCKDTCP 241
Query: 1064 PGQYICPNSRVCI--ERTRLCDG---IKDCPLG---DDEKQCINLFPIETRSPSSTYLRN 1115
P P + + G +K CP D C+ ++ +R
Sbjct: 242 PLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRK 301
Query: 1116 AMQGRSDVPIRVHQRTDNNPKHVLQDGEDSYLQNTLYPVYHDSGFLMIQKQGQWGKLCMN 1175
+ + K L + ++
Sbjct: 302 CKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTP 361
Query: 1176 QINNFIMKTLKW 1187
++ + LK
Sbjct: 362 PLDPQELDILKT 373
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 30.4 bits (69), Expect = 2.4
Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 21/92 (22%)
Query: 992 ECEMNSSFRCGNGECV-SIGS-KCNQLVDCADG----------SDEKNCSCADFLKSQFL 1039
ECE + C NG C S GS C +C+ + +C +
Sbjct: 6 ECESS---PCINGVCKNSPGSFIC----ECSSESTLDPTKTICIETIKGTCWQTVIDGRC 58
Query: 1040 TRKI--CDGIIDCWDFSDEYECEWCSPGQYIC 1069
I C C+ Q
Sbjct: 59 EININGATLKSQCCSSLGAAWGSPCTLCQVDP 90
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 30.9 bits (70), Expect = 2.9
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 863 VILVMSSNSSNMLNFNENRTSDDNDNKNKAMAQNLLTQMLEKYNRVITNDS---SVSSLK 919
I + + N+L N+ T + + L + E ++ ++ DS +K
Sbjct: 218 AIFIRPRSLENVLEINKRITEEQARKAFDRATK-LEQEFTECFSAIVEGDSFEEIYHKVK 276
Query: 920 YLIDQISHQH 929
+I+ +S +
Sbjct: 277 RVIEDLSGPY 286
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 31.1 bits (70), Expect = 3.1
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 23/113 (20%)
Query: 1534 MSRQHVCNGHRCPLGECLPKARVCNGYM-EC-----SDGKCEMNSSFRCGNGECVSIGSK 1587
C R EC A VC G EC +G+ N++ C NG+C + +
Sbjct: 272 KGAGTEC---RAAKDECDM-ADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMADQ 327
Query: 1588 CNQL----VDCAD---------GSDEKNCSCADFLKSQFLTRKICDGIIDCWD 1627
C L + G+ C K + + G + C+
Sbjct: 328 CIALFGPGATVSQDACFQFNREGNHYGYCRKEQNTKIACEPQDVKCGRLYCFP 380
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 31.1 bits (69), Expect = 3.3
Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 11/154 (7%)
Query: 1462 RGGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMA 1521
G AC+G MC + + CAR + G + S Y+ A
Sbjct: 133 AFGGRACVGADLQAEMCNTQACEKT--QLEFMSQQCARTD--GQPLRSSPGGASFYHWGA 188
Query: 1522 ASEYNMMRNETQMSRQHVCNGHRCPLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGEC 1581
A ++ + + + G+ +G G E + C G C
Sbjct: 189 AVPHSQGDALCRHMCRAIGESFIMKRGDS-----FLDGTRCMPSGPREDGTLSLCVLGSC 243
Query: 1582 VSIGSKCNQLVDCADGSDEKNCSCADFLKSQFLT 1615
+ C+ +D D D
Sbjct: 244 RTF--GCDGRMDSQQVWDRCQVCGGDNSTCSPRK 275
>1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP:
b.25.1.1
Length = 206
Score = 30.2 bits (67), Expect = 4.0
Identities = 22/151 (14%), Positives = 39/151 (25%), Gaps = 28/151 (18%)
Query: 1463 GGRDACLGDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNNMAA 1522
R C D+ G C+ + GYG A K N + + ++
Sbjct: 46 WARTGCKFDASGRGSCR---TGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDF-FDISLI 101
Query: 1523 SEYNMMRNETQMSRQHVCNGHRCP---LGECLPKARVCNGYMECSDGKCEMNSSFRCGNG 1579
+N+ + G RC C + R
Sbjct: 102 DGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGV-------------------- 141
Query: 1580 ECVSIGSKCNQLVDCADGSDEKNCSCADFLK 1610
C + + C GS +C ++ +
Sbjct: 142 -CNNACPVFKKDEYCCVGSAANDCHPTNYSR 171
>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase
inhibitor complex; 1.50A {Streptomyces griseus} SCOP:
b.47.1.1
Length = 187
Score = 30.2 bits (68), Expect = 4.3
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 1470 GDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSN 1511
GDSGG G +G+ S GC+ ++ V+
Sbjct: 141 GDSGGAHF----AGS-VALGIHSGSSGCSGTAGSAIHQPVTE 177
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E
2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...
Length = 185
Score = 29.8 bits (67), Expect = 4.4
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 1466 DACL--GDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSN 1511
+ C GDSGGPL +G+TS G G + + V+
Sbjct: 133 NVCAEPGDSGGPLYSGT-----RAIGLTSGGSGNCSSGGTTFFQPVTE 175
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 30.8 bits (68), Expect = 5.3
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 1469 LGDSGGPLMC-QEPDGRWSLMGVTSNGYGCARANRPGVYTKVSNYIPWLYNN 1519
GD+G L +W + G Y A Y+K + N
Sbjct: 205 QGDAGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHAAYSKWNQTTIDNLKN 256
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system; 2.20A
{Necator americanus}
Length = 424
Score = 30.5 bits (68), Expect = 5.8
Identities = 9/85 (10%), Positives = 13/85 (15%), Gaps = 2/85 (2%)
Query: 1491 TSNGYGCARANRPGVYTKVSNYIPWLYNNMAASEYNMMRNETQMSRQHVCNGHRCPLGEC 1550
+ GCA Y + Q +
Sbjct: 156 ETTKLGCAYKVCGTKLAVSCIYNG--VGYITNQPMWETGQACQTGADCSTYKNSGCEDGL 213
Query: 1551 LPKARVCNGYMECSDGKCEMNSSFR 1575
K + M S R
Sbjct: 214 CTKGPDVPETNQQCPSNTGMTDSVR 238
>3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus
mutans}
Length = 148
Score = 29.2 bits (66), Expect = 5.8
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 620 LRPRPYLGTRNNIGTTTITTIPTPTLEDDPHNIDSDYVDQHSNRG 664
L R + + L + ID DY + +N G
Sbjct: 64 LFDRSSNPRKKGL-----------VLINSVGVIDGDYYNNPNNEG 97
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 29.4 bits (66), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 1470 GDSGGPLMCQEPDGRWSLMGVTSNGYGCARANRPGVYTKVSN 1511
GDSGGP + G GVTS G G R+ + ++
Sbjct: 138 GDSGGPWL----TGS-QAQGVTSGGTGDCRSGGITFFQPINP 174
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Length = 378
Score = 30.0 bits (67), Expect = 6.1
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 9/64 (14%)
Query: 1535 SRQHVCNGHRCPLGECLPKARVCNG-------YMECSD--GKCEMNSSFRCGNGECVSIG 1585
+ G + + +G + +CS G + C N + G
Sbjct: 283 KGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNG 342
Query: 1586 SKCN 1589
C
Sbjct: 343 RYCT 346
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system;
HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 30.2 bits (67), Expect = 6.7
Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 1540 CNGHRC--PLGECLPKARVCNGYMECSDGKCEMNSSFRCGNGECVSIGSKCNQLVDCADG 1597
+G C E C C + G CV+ CN DC D
Sbjct: 41 FHGEPCNFSDKEVED----CVTNRPCRS-QVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQ 95
Query: 1598 SDEKNCS 1604
SDE NC
Sbjct: 96 SDEANCR 102
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 28.5 bits (64), Expect = 7.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 450 YTKSRQTTQHSVPPEIVVTTEARKATPSSVHGSSP 484
Y+K ++ S E+ V E TP+ S
Sbjct: 82 YSKGITWSERSKTLELKVIKENVIQTPAPGPTSEH 116
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 30.0 bits (67), Expect = 8.0
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 25/104 (24%)
Query: 998 SFRCGNGECVS----IGSKCNQLVDCADGSDEKNCSCADFLKSQFLTRKICDGIIDCWDF 1053
S+ CG C G+ C L +CA D C + C +
Sbjct: 24 SWSCG--FCPVGFLGNGTHCEDLDECALVPD----ICFS-----------TSKVPRCVNT 66
Query: 1054 SDEYECEWCSPG----QYICPNSRVCIERTRLCDGIKDCPLGDD 1093
+ C C P Q + ++C+ C
Sbjct: 67 QPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTH 110
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics consortium,
alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A
{Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A*
3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A*
2o8j_A*
Length = 287
Score = 29.5 bits (66), Expect = 8.3
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 1004 GECVSIGSKCNQLV--DCADGSDEKNCSCA-DFLKSQFLTRKICDGIIDCWDFSDEYEC- 1059
++I L C D NC C ++ + + + +EC
Sbjct: 68 TSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECN 127
Query: 1060 EWCSPGQYICPNSRV 1074
CS + C N V
Sbjct: 128 HACSCWRN-CRNRVV 141
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse
transcriptase, transferase, replication; 3.00A {Moloney
murine leukemia virus} SCOP: e.8.1.2
Length = 455
Score = 29.6 bits (67), Expect = 9.2
Identities = 3/39 (7%), Positives = 11/39 (28%)
Query: 300 FGDVFTSVATSKPPLENINEKIRITPSTNQPRKRTSPIA 338
F + + I + ++ + P++
Sbjct: 10 FPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMS 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 30.0 bits (67), Expect = 9.5
Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 669 IFKGHNLDYGALNTKDFY--LPPPPNISDHIINDFSDSLLDKISVGDSPSLSEEAPPLDN 726
K + G L T+ L P ++D I+ + + D+ + L E+A L
Sbjct: 569 ALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQ---LCEKAGLLQR 625
Query: 727 GDDNFSTTEESRKVILNTEVV 747
++F+ + ++ +++T ++
Sbjct: 626 ALEHFTDLYDIKRAVVHTHLL 646
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,769,426
Number of extensions: 1418595
Number of successful extensions: 4129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3287
Number of HSP's successfully gapped: 388
Length of query: 1634
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1527
Effective length of database: 3,714,246
Effective search space: 5671653642
Effective search space used: 5671653642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.5 bits)