Query psy11547
Match_columns 587
No_of_seqs 481 out of 2985
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 21:19:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-46 4.7E-51 390.5 32.4 437 84-546 6-484 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.6E-37 5.3E-42 318.8 13.2 392 88-524 26-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 6.3E-35 2.1E-39 298.2 27.6 362 91-519 27-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.5E-30 5.1E-35 269.8 28.4 392 122-529 48-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 5.5E-32 1.9E-36 270.3 4.5 351 93-509 3-361 (375)
6 2xut_A Proton/peptide symporte 99.9 4.7E-27 1.6E-31 245.5 20.2 138 125-267 51-197 (524)
7 2cfq_A Lactose permease; trans 99.9 1.1E-28 3.6E-33 249.6 5.1 362 110-529 27-404 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 6.9E-12 2.3E-16 127.8 10.4 154 108-268 270-433 (451)
9 2gfp_A EMRD, multidrug resista 99.3 1.2E-11 4.2E-16 122.6 11.1 163 351-529 16-179 (375)
10 3o7q_A L-fucose-proton symport 99.3 5.9E-11 2E-15 120.3 16.1 158 351-521 42-226 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.2 8.6E-11 2.9E-15 121.1 15.9 158 351-524 29-196 (491)
12 2xut_A Proton/peptide symporte 99.2 1.4E-10 4.9E-15 120.5 15.9 156 352-523 29-197 (524)
13 2cfq_A Lactose permease; trans 99.2 1.2E-11 4.1E-16 124.5 6.6 142 126-272 257-404 (417)
14 4gc0_A D-xylose-proton symport 99.1 2.2E-10 7.6E-15 118.0 10.6 159 110-272 297-467 (491)
15 3mkt_A Multi antimicrobial ext 67.6 94 0.0032 30.2 19.1 23 212-234 150-172 (460)
16 2g9p_A Antimicrobial peptide l 53.2 5.2 0.00018 19.9 0.9 14 147-160 2-15 (26)
17 4dve_A Biotin transporter BIOY 22.5 1.2E+02 0.004 25.8 5.0 25 134-158 99-123 (198)
18 2dw3_A Intrinsic membrane prot 21.1 2.1E+02 0.0072 19.7 5.3 34 497-530 26-59 (77)
19 2zz9_A Aquaporin-4; water tran 20.3 86 0.0029 28.7 4.0 22 501-522 205-226 (301)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-46 Score=390.54 Aligned_cols=437 Identities=26% Similarity=0.473 Sum_probs=346.6
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCC-----CCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchh
Q psy11547 84 KVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRD-----SPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK 158 (587)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr 158 (587)
+.++.+.+.++++++.+..|+|.+.++..+|.+..+. .+.+.+..+.|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3456788888889999999999999999988876541 11234456789999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHh------------------cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcc
Q psy11547 159 MTLIITEVPTILGWALIAL------------------APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLR 220 (587)
Q Consensus 159 ~~l~~~~~~~~i~~~~~~~------------------~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r 220 (587)
++++++.+++.++++++++ +++++ .++++|+++|+|.|+..+...+++.|+.|+++|
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~-----~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~r 160 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP-----EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhh
Confidence 9999999999999999995 55666 899999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHH
Q psy11547 221 GMLSSLASFGVSLGVLFEYSLGAFL------------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSL 288 (587)
Q Consensus 221 ~~~~~~~~~~~~~G~~i~~~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 288 (587)
++..++.+.+..+|.++++.++..+ .||+.+.+..+..++.++..+++||||+|+..+++.+++.+.+
T Consensus 161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l 240 (491)
T 4gc0_A 161 GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL 240 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence 9999999999999999999888765 5899999999998888888888999999999999999999888
Q ss_pred HHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC
Q psy11547 289 RRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH 368 (587)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 368 (587)
++....+...+.. .+..+... ...+...+.... ..++.........+.++.+.+.+.+|.+.+.+..+.+
T Consensus 241 ~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4gc0_A 241 RKIMGNTLATQAV----QEIKHSLD----HGRKTGGRLLMF--GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310 (491)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHH----HHHHHTTHHHHS--CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCchhHHHH----HHHHHHHH----hhhhhhhHHHHh--cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence 8765432111111 11111100 001111111111 1234455566666777788888999999999888776
Q ss_pred -cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHH
Q psy11547 369 -VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTF 447 (587)
Q Consensus 369 -~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (587)
........+.++..+++.++++++.||+|||+.+..+...+.++++.++..... ....+..+....++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSMLFY 379 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-----------ccchHHHHHHHHHH
Confidence 444566677788899999999999999999999999988888887777665444 23445555666666
Q ss_pred HHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh------hhhhhHHHHHHHHHHHHHHHh
Q psy11547 448 TAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH------LTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~ 521 (587)
..++..++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+. .+....|++++++++++.++.
T Consensus 380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777888888889999999999999999999999999999999988776443 345567888999999999988
Q ss_pred heecccCCCCCHHHHHHHHhcCCCC
Q psy11547 522 YVYLPETKNKTLQEIEEQFAGKSKK 546 (587)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (587)
++++||||+|++||+|+.++++.++
T Consensus 460 ~~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHHCCCCTTCCHHHHGGGTC-----
T ss_pred HheecCCCCCCHHHHHHHhCCCCcc
Confidence 9999999999999998887665443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.6e-37 Score=318.78 Aligned_cols=392 Identities=13% Similarity=0.064 Sum_probs=289.7
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
++......+++.+..+++.....+.+|.+.++ + .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS---T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 56667777788888899999999999999886 8 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhh
Q psy11547 168 TILGWALIAL----APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGA 243 (587)
Q Consensus 168 ~~i~~~~~~~----~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 243 (587)
.+++.+++++ +++++ .++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIA-----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSS-----HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHhhhhccccHH-----HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999 99999999999999999999999999999999999999999999999999999998
Q ss_pred hh----h-HHHHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhh
Q psy11547 244 FL----S-WDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKS 317 (587)
Q Consensus 244 ~l----~-wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (587)
++ + ||+.|++.+++.++..++. +++||+|+....+.+.+. ..+.+.+ ..++.+++..
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~~~~~~~~ 239 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD------YNEKAEQELT 239 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------------C
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc------chhhhhcccc
Confidence 75 7 9999999998887766555 448888754321111100 0000000 0000000000
Q ss_pred hhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc
Q psy11547 318 RNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK 395 (587)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~ 395 (587)
.......+.++++.++ ...+..+...........+.|.++++ .|.+ ...+....+..++.+++.++.+++.||
T Consensus 240 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 314 (451)
T 1pw4_A 240 AKQIFMQYVLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 314 (451)
T ss_dssp CTHHHHHHTSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111123333333222 22222222333355567778888877 6777 456677888889999999999999999
Q ss_pred c--CCchhhHhhhHHHH-HHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCch
Q psy11547 396 M--GRRSLTFISSIGCG-VSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVR 472 (587)
Q Consensus 396 ~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 472 (587)
+ +||+.+..+..+.. ++++++.. . . ....+......++.+.+.. ...+....++.|.+|++.|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~--------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 315 VFRGNRGATGVFFMTLVTIATIVYWM---N--P--------AGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHTTS---C--C--------TTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHH---h--c--------ccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhh
Confidence 9 99888777666555 44433322 0 0 1123333333333333333 3334445788999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 473 GIVGGLTTCACHF-FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 473 ~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
+++.|+.+....+ |..++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999989988888887777655443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=6.3e-35 Score=298.17 Aligned_cols=362 Identities=11% Similarity=-0.019 Sum_probs=276.9
Q ss_pred HHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHH
Q psy11547 91 LAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTIL 170 (587)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 170 (587)
...++++..+..+++.....+.+|.+.++ +|++..+.|++.+++.+++.++++++|+++||+|||++++++.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 44455566777788888899999999885 999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 171 GWALI---ALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 171 ~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
+.+++ +++++++ .++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus 104 ~~~~~~~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 104 GAALFWPAAEIMNYT-----LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHhccccccHH-----HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 8889999 9999999999999999999999999999999999999999999999999999999887
Q ss_pred ---h-------------------------HHHHHHHHHHHHHHHHHHhcc--cCCCchHHHhcCCHHHHHHHHHHHhCCC
Q psy11547 246 ---S-------------------------WDTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRANN 295 (587)
Q Consensus 246 ---~-------------------------wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~ 295 (587)
+ ||+.|++.+++.++..++.++ .||+++...+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---------------- 242 (438)
T 3o7q_A 179 SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA---------------- 242 (438)
T ss_dssp TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----------------
T ss_pred cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc----------------
Confidence 2 999998887777666554443 566542100000
Q ss_pred cchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHH-HHhc-CCC-cchH
Q psy11547 296 YDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI-FKDA-GAH-VNNN 372 (587)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~-~~~~ 372 (587)
+++...+...+.++++..+...+..++.. ........+.|.+ +++. |.+ ...+
T Consensus 243 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~ 298 (438)
T 3o7q_A 243 -------------------KQGSFSASLSRLARIRHWRWAVLAQFCYV-----GAQTACWSYLIRYAVEEIPGMTAGFAA 298 (438)
T ss_dssp -------------------STTSHHHHHHHHTTCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred -------------------cccchhhhHHHHHhChHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhccCCcchhHHH
Confidence 01112234445566555443322222221 2234456677777 7765 777 5567
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHh
Q psy11547 373 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAST 452 (587)
Q Consensus 373 ~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
....+..++.+++.++.+++.||++||+.+..+.++.+++.+++.. ... ........+.+.+..
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~g~~~~ 362 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---------------AGG-HVGLIALTLCSAFMS 362 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---------------cCC-cHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999998888877777666554 112 222333334443333
Q ss_pred ccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHH
Q psy11547 453 IGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTI 519 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 519 (587)
...+..+++..|.+|++ ++.+.++.. .+.+|..++|.+.|.+.|..| +...|.+.+++.++..+
T Consensus 363 -~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 363 -IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp -THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34456668888999977 888888877 677999999999999999999 88888876555544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=1.5e-30 Score=269.77 Aligned_cols=392 Identities=10% Similarity=0.067 Sum_probs=250.4
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc-cchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccc
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDL-VGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGS 200 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 200 (587)
|+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++ .++++|+++|++.
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~ 122 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS-----ALFGSIILIIIGT 122 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT-----HHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHH
Confidence 489999999999999999999999999999999 8999999999999999999999999999 9999999999999
Q ss_pred cccccccceeeeeccCCCc--chhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCCCc-
Q psy11547 201 GMVGAPSRIYTAECSQPHL--RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPESP- 272 (587)
Q Consensus 201 g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~esp- 272 (587)
+...+...+++.|++|+++ |+.++++++.+.++|.+++|.+++.+ +||+.|++.++..++..++.++ .++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999988 77788889999999999999999987 8999999988777666555443 22111
Q ss_pred ---hHHHhcCCHHHHHHHHHH----------------HhCC-CcchHHHHhhHHHHHHHHH-HHhhhhhhHhHHhhhcCC
Q psy11547 273 ---SWLLSQGRKDACRNSLRR----------------LRAN-NYDVEKEVQGLYEFSKRQE-TQKSRNFKETLAAIVEPA 331 (587)
Q Consensus 273 ---~~~~~~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 331 (587)
+....+.+.++..+..+. .... +.+................ .....+.+......+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 000111122333222221 1111 1111100000000000000 000000000000011111
Q ss_pred chHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhH-----h
Q psy11547 332 CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF-----I 404 (587)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~-----~ 404 (587)
.. ....... .+..+..+.....+.+.+..+ .+.+ ...+.......+..+++.++.+++.||++||+... .
T Consensus 283 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 283 VS--YIPLFIA-AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp TT--HHHHHHH-HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HH--HHHHHHH-HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 11 1111111 111111233344455656655 4555 45667777788888899999999999999987554 5
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHH
Q psy11547 405 SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484 (587)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 484 (587)
+.++.+++.+++.......... .....+.......+.+.+. ....+..+.++.|.+|++.|+++.|+.+....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALYGTS------GKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHCCCC------TTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555566555554432221100 0112233333333333333 33345556899999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 485 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 485 ~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
+|.++++.+.+.+.+. ++...|.+.+++++++.++.+++.++.+
T Consensus 433 ~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 433 VGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877654 6677888888887777776666555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=5.5e-32 Score=270.30 Aligned_cols=351 Identities=13% Similarity=0.094 Sum_probs=256.3
Q ss_pred HHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHH
Q psy11547 93 VFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGW 172 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 172 (587)
+..+++.+..+++.....+.+|.+.++ +|.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD---LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 345566677778888888999998885 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHH
Q psy11547 173 ALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWD 248 (587)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr 248 (587)
++.+++++++ .++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++ +||
T Consensus 80 ~~~~~~~~~~-----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 80 LVAVTTSSLT-----VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhccHH-----HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhh
Q psy11547 249 TVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAI 327 (587)
Q Consensus 249 ~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (587)
+.|++.+++.++..+.. +++||++++..++ ++..+...+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~ 196 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDAPR--------------------------------------TRLLTSYKTLF 196 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC--------------------------------------CCTTTCSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCccc--------------------------------------ccHHHHHHHHh
Confidence 99999998888777644 4488876421000 00111223333
Q ss_pred hcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhh
Q psy11547 328 VEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFIS 405 (587)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~ 405 (587)
+++..+...+... ...........+.|.++++ .|.+ ...+.......++.+++.++.+++.||++++ +..+
T Consensus 197 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~ 269 (375)
T 2gfp_A 197 GNSGFNCYLLMLI-----GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQS 269 (375)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHH
T ss_pred cCcchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3333322222211 1122233444555555554 5555 3456677778888899999999999998872 2222
Q ss_pred hHH-HHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHH
Q psy11547 406 SIG-CGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484 (587)
Q Consensus 406 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 484 (587)
... ...+...+...... ..+.+.......+.+.+.+. ..+...+++.|.+| +.|+++.|+.+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 270 VICCLLAGLLMWIPDWFG-----------VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp HHHHHHTSSSSSHHHHHH-----------HHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc-----------cccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 222 22222111111100 01223333333444444443 34555688899998 889999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 485 FFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 485 ~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
+|..++|.+.|.+.+..++...+.+
T Consensus 337 ~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 337 IGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHH
Confidence 9999999999999887777655554
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=4.7e-27 Score=245.53 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=127.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHhhHHHHHHHHHHHhcC-CCCCCcchhhHHhhhhhhccccc
Q psy11547 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIITEVPTILGWALIALAP-SLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 125 ~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
.+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++ .++++|++.|++.+.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ-----GFYTGLFLIALGSGG 125 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH-----HHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999 999999999999999999999998 888 899999999999999
Q ss_pred cccccceeeeeccCCCcchhHhHH---HHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSL---ASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
..+...+++.|++|+++|+++.+. ...+.++|.+++|.+++.+ +||+.|++.+++.++..++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876666 8999999999999999887 8999999988887766655544
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=1.1e-28 Score=249.62 Aligned_cols=362 Identities=11% Similarity=0.075 Sum_probs=223.7
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHH---HHHhcCCC-CCCc
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWA---LIALAPSL-PSSI 185 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~~~~~~-~~~~ 185 (587)
.+.+|.+..+ ++|++..+.|++.+++.++..++++++|+++||+|||++++++.++++++.. ..++++.. .
T Consensus 27 ~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 101 (417)
T 2cfq_A 27 FPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY--- 101 (417)
T ss_dssp TTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT---
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3556664443 4899999999999999999999999999999999999999998887655321 11222111 1
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccCC--CcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQP--HLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAISTIIPVL 260 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~~~ 260 (587)
.++..+++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.+++++ +||+.|++.++..++
T Consensus 102 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 102 --NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp --TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTT
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 233456666665555544444445555443 3456677777777888889999888877 799999988777665
Q ss_pred HHHHhcccC-CCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHH
Q psy11547 261 SIIAGCLMP-ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVIL 339 (587)
Q Consensus 261 ~~~~~~~~~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (587)
..+..++.+ |+++. .++.+.+ ..+ +++...+...+.++++..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~~----------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (417)
T 2cfq_A 180 LAVLLFFAKTDAPSS-ATVANAV----------GAN-------------------HSAFSLKLALELFRQPKLWFLSLYV 229 (417)
T ss_dssp HHHHSCSSCCCCSCS-SCSSSSS----------SSC-------------------CCCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcccccc-ccccccc----------ccc-------------------cccccHHHHHHHhcCCchhhHHHHH
Confidence 555555544 43211 0000000 000 0011112233445554433322211
Q ss_pred HHHHHHHHhccchhhHhcHHHHHHhc-CCC----cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHH
Q psy11547 340 MLYFLIYQFSGVNPVTFYAVNIFKDA-GAH----VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMT 414 (587)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~----~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 414 (587)
+.... .+.....+.|.++.+. +.. ...+....+..+..+++.++.+++.||+|||+++..+.++.+++.+
T Consensus 230 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 230 IGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 11111 1222233355555442 211 1123445556677888899999999999999988877776666544
Q ss_pred HHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHH-HHHHHHHHHHHHHh
Q psy11547 415 GLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT-TCACHFFIFLTVKS 493 (587)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~~~~ 493 (587)
.+.. ....+...+...+...+.. ...+..+.++.|.+|++.|+++.++. +....+|++++|.+
T Consensus 305 ~~~~---------------~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 305 GSSF---------------ATSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHTT---------------CCSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHH---------------hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 4432 1122222222222222222 12223357889999999999999994 78888999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 494 YNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 494 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
.|.+.+..|+...|.+.+++++++.++.++..++++
T Consensus 369 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999888888888888888877776655555433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.29 E-value=6.9e-12 Score=127.79 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=129.8
Q ss_pred ccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc--chhHHHHHhhHHHH-HHHHHHHhcC--CCC
Q psy11547 108 FSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV--GRKMTLIITEVPTI-LGWALIALAP--SLP 182 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~~~--~~~ 182 (587)
.....+|.+..+ .+|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++.++.. ++.++..+.+ +.+
T Consensus 270 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 270 GILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 344566666654 4789999999999999999999999999999999 99999988877776 6666666654 333
Q ss_pred CCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHH-HHHHHHHhhhhh----hHHHHHHHHHHH
Q psy11547 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSL-GVLFEYSLGAFL----SWDTVAAISTII 257 (587)
Q Consensus 183 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~l----~wr~~f~~~~~~ 257 (587)
.+.+..++.|++.+...+...+++.|.+|+++|++++++......+ |..+++.+.+.+ +|+..|++.+++
T Consensus 348 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 348 -----VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp -----HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6777888999988888888889999999999999999999999999 999999999887 899999998888
Q ss_pred HHHHHHHhccc
Q psy11547 258 PVLSIIAGCLM 268 (587)
Q Consensus 258 ~~~~~~~~~~~ 268 (587)
.++..++.+++
T Consensus 423 ~~~~~~~~~~~ 433 (451)
T 1pw4_A 423 SILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87776665543
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.27 E-value=1.2e-11 Score=122.60 Aligned_cols=163 Identities=9% Similarity=-0.047 Sum_probs=125.0
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++..++.++....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 85 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---------- 85 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 444555567777778887 456778888899999999999999999999999999999888888777662
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
.+.+.......+.+.+. ....+...+++.|.+|++.|+++.++.+....+|..++|.+.+.+.+..||+..|.+
T Consensus 86 -----~~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 -----SSLTVLIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 12233333333333333 334455568899999999999999999999999999999999999988899999998
Q ss_pred HHHHHHHHHHHhheecccCC
Q psy11547 510 YGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~ 529 (587)
.+++.++..+...+..||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHCcccC
Confidence 88877776665555555543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.27 E-value=5.9e-11 Score=120.34 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=120.6
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+.++.++.+++.++.......
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------- 114 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------- 114 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 455666778888888888 566788888999999999999999999999999999999988888777332211
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH-Hhhh------
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ-THLT------ 502 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~-~~~g------ 502 (587)
.+.+..++..++.+.+.+. ..+...+++.|.+|++.|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 115 -----~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 -----MNYTLFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp -----TCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred -----ccHHHHHHHHHHHHhhHHH-hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 2334444444444444443 34455689999999999999999999999999999999999988 5444
Q ss_pred -------------------hhhHHHHHHHHHHHHHHHh
Q psy11547 503 -------------------KEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 503 -------------------~~~~~~~~~~~~~~~~~~~ 521 (587)
|++.|++.+++.++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7778877766665555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.24 E-value=8.6e-11 Score=121.11 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=118.9
Q ss_pred chhhHhcHHHHHHh------cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc-cCCchhhHhhhHHHHHHHHHHHHHHHh
Q psy11547 351 VNPVTFYAVNIFKD------AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFA 422 (587)
Q Consensus 351 ~~~~~~~~~~~~~~------~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
++....+.+.++.+ .|.+ .+.+.......++..++.++.|+++|| +|||+++..+.++.+++.+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----
Confidence 33444445555544 6777 566788888999999999999999999 89999999999888888777655
Q ss_pred ccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCc--hhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy11547 423 TKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV--RGIVGGLTTCACHFFIFLTVKSYNMFQTH 500 (587)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 500 (587)
..+.+...+..++.+.+.+. ..+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+.
T Consensus 105 -----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 105 -----------PFGASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp -----------CCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhHHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22334444444444444333 34555689999999988 77788888999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 501 LTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 501 ~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
.||++.|++.+++.+++.++..+.
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998877766665554433
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.21 E-value=1.4e-10 Score=120.52 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=116.8
Q ss_pred hhhHhcHHHHHH-hcC------CC-cchHHHHHHHHHHHHHHHHhHHHhhccc-CCchhhHhhhHHHHHHHHHHHHHHHh
Q psy11547 352 NPVTFYAVNIFK-DAG------AH-VNNNLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFA 422 (587)
Q Consensus 352 ~~~~~~~~~~~~-~~g------~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
+....+.+.++. +.| .+ .+.+.......++..++.++.|+++||+ |||+++.++.++.+++.+++.+
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI---- 104 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----
Confidence 334445555544 567 77 5667888888999999999999999999 9999999988888888777665
Q ss_pred ccCCCCCCCcCcc-chhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHH---HHHHHHHHHHHHHHhhHHHH
Q psy11547 423 TKDFWPEYKFPAF-VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL---TTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 423 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~i~~~~~g~l~ 498 (587)
.. +.+..++..++.+.+. ....+...+++.|.+|++.|+.+.+. .+....+|..++|.+.+.+.
T Consensus 105 -----------~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 105 -----------FEHSVQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp -----------TSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred -----------hcccHHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 3333333334443333 33445556899999999999776666 88889999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhe
Q psy11547 499 THLTKEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 499 ~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (587)
+..||+..|++.+++.++..++.++
T Consensus 173 ~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9899999999888777666555443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.20 E-value=1.2e-11 Score=124.48 Aligned_cols=142 Identities=8% Similarity=0.069 Sum_probs=118.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccccccc
Q psy11547 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGA 205 (587)
Q Consensus 126 s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 205 (587)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+ .+++..++.|++.+...+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL-----EVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHH-----HHHHHTTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHH
Confidence 455678888888899999999999999999999999999988888877777777766 777888888887776667
Q ss_pred ccceeeeeccCCCcchhHhHH-HHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCCCc
Q psy11547 206 PSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPESP 272 (587)
Q Consensus 206 ~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~esp 272 (587)
....++.|.+|++.|+.+.++ ++....+|.+++|.+++.+ +++..|.+.+++.++..++.++ .||.+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 778899999999999999998 4778889999999999877 7888999888888777666554 66654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.09 E-value=2.2e-10 Score=117.98 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=112.0
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhh
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWI 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l 189 (587)
....|.+... .+.+............+...++.++++++.||+|||+.++.+.....++.+..+............+
T Consensus 297 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 297 LYYAPEVFKT---LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhcchHHHHh---cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 3444555553 5666677777778888999999999999999999999999999888887776654322111111011
Q ss_pred H-HhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----------hHHHHHHHHHHHH
Q psy11547 190 F-TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----------SWDTVAAISTIIP 258 (587)
Q Consensus 190 ~-~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----------~wr~~f~~~~~~~ 258 (587)
+ +.-+..+++. ...+....+.+|.+|.+.|++++++......+|.++++.+...+ ++.+.|++.++++
T Consensus 374 ~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 374 LSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 1 1222223322 33466778899999999999999999999888888887665444 3456778888888
Q ss_pred HHHHHHhc-ccCCCc
Q psy11547 259 VLSIIAGC-LMPESP 272 (587)
Q Consensus 259 ~~~~~~~~-~~~esp 272 (587)
++..+..+ ++|||.
T Consensus 453 ~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 453 VLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHCCCCT
T ss_pred HHHHHHHHheecCCC
Confidence 77776665 499984
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=67.62 E-value=94 Score=30.22 Aligned_cols=23 Identities=9% Similarity=-0.185 Sum_probs=11.3
Q ss_pred eeccCCCcchhHhHHHHHHHHHH
Q psy11547 212 AECSQPHLRGMLSSLASFGVSLG 234 (587)
Q Consensus 212 ~e~~~~~~r~~~~~~~~~~~~~G 234 (587)
.......+|.+...+......+-
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~ 172 (460)
T 3mkt_A 150 RSFTDGMSLTKPAMVIGFIGLLL 172 (460)
T ss_dssp TTTTCTTSCCTTTHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH
Confidence 33444455555555555444433
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.20 E-value=5.2 Score=19.92 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=11.4
Q ss_pred hHHHhhhccchhHH
Q psy11547 147 LGGYMMDLVGRKMT 160 (587)
Q Consensus 147 ~~g~l~dr~Grr~~ 160 (587)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.50 E-value=1.2e+02 Score=25.80 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhHHHhhhccchh
Q psy11547 134 ASLSAIGTMVGCVLGGYMMDLVGRK 158 (587)
Q Consensus 134 ~s~~~l~~~i~~~~~g~l~dr~Grr 158 (587)
+.-|.+|+.++..+.|++.+|..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4678899999999999999997644
No 18
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=21.06 E-value=2.1e+02 Score=19.67 Aligned_cols=34 Identities=12% Similarity=-0.063 Sum_probs=17.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhheecccCCC
Q psy11547 497 FQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKN 530 (587)
Q Consensus 497 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
+..-.||..++.+...+.+++.-++-.++||..+
T Consensus 26 MlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 26 MMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 3344456555555555555544445566676543
No 19
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=20.32 E-value=86 Score=28.70 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhh
Q psy11547 501 LTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 501 ~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
+++.|.+++.-.+..+.+.+.+
T Consensus 205 w~~~WVy~vgPiiGailaa~ly 226 (301)
T 2zz9_A 205 WENHWIYWVGPIIGAVLAGALY 226 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeeeHHHHHHHHHHHHH
Confidence 3455666655444444444343
Done!