RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11547
(587 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 188 bits (479), Expect = 2e-53
Identities = 109/451 (24%), Positives = 208/451 (46%), Gaps = 27/451 (5%)
Query: 101 NTGMVFGFSAAATSQ----LISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG 156
+TG++ F ++ ++ S I S+ ++G ++G + G + D G
Sbjct: 15 DTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFG 74
Query: 157 RKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ 216
RK +L+I V ++G L A +L GR++ GLG G + +Y +E +
Sbjct: 75 RKKSLLIGNVLFVIGALLQGFAKGKSFYML---IVGRVIVGLGVGGISVLVPMYISEIAP 131
Query: 217 PHLRGMLSSLASFGVSLGVLFEYSLGAFLS-------WDTVAAISTIIPVLSIIAGCLMP 269
LRG L SL G++ G+L +G L+ W + + +L +I +P
Sbjct: 132 KKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLP 191
Query: 270 ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329
ESP WL+ +G+ + R L +LR DV++E+Q + +R + ++ E
Sbjct: 192 ESPRWLVLKGKLEEARAVLAKLR-GVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTV 250
Query: 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
+ ++ ++ + Q +G+N + +Y+ IF+ G ++ L +I+G+V +FT +
Sbjct: 251 R---QRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL-SDSLLVTIIVGVVNFVFTFIA 306
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
++ + GRR L + + G + LG+ + + ++ ++ F A
Sbjct: 307 IFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK-------SKGAGIVAIVFILLFIA 359
Query: 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509
+G+ VPWV++ E++P VR + T A FL + T FL+
Sbjct: 360 FFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLF-PIITGAIGGYVFLV 418
Query: 510 YGCISLLGTIFFYVYLPETKNKTLQEIEEQF 540
+ + +L +F + ++PETK +TL+EI+E F
Sbjct: 419 FAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 189 bits (481), Expect = 2e-53
Identities = 110/421 (26%), Positives = 201/421 (47%), Gaps = 18/421 (4%)
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185
+S + S+ +G +G + G++ D GRK +L+I + ++G L+ LA S
Sbjct: 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV- 127
Query: 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEY------ 239
+ GR+L G+G G+ A +Y +E + LRG L+SL ++ G+L Y
Sbjct: 128 -EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186
Query: 240 -SLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDV 298
SL L W + I L + +PESP WL+ +GR + R SL RLR +
Sbjct: 187 VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GE 245
Query: 299 EKEVQGLYEFSKRQETQKSRNFKETLAAI--VEPACLKPFVILMLYFLIYQFSGVNPVTF 356
+KE+ E + + + R+ + + ++ + + ++ QF+G+N + +
Sbjct: 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMY 305
Query: 357 YAVNIFKDAGAHVNNN-LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 415
Y+ IF++AG ++ L ++I+G V FT + ++ + GRR L I + G + +
Sbjct: 306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365
Query: 416 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 475
LG+ + + ++ ++ F A +G+ VPWV++ E++P +R
Sbjct: 366 LGILGASF-----VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420
Query: 476 GGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535
+ A F+ + + G F+ +G +++LG IF Y +LPETK +TL+E
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480
Query: 536 I 536
I
Sbjct: 481 I 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 156 bits (397), Expect = 9e-42
Identities = 120/496 (24%), Positives = 218/496 (43%), Gaps = 64/496 (12%)
Query: 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIG-----T 141
S+TL A LG G++FG+ A S + + + + A+ S +G
Sbjct: 11 FSITLV--ATLG----GLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASA 64
Query: 142 MVGCVLG----GYMMDLVGRKMTLIITEVPTILGWALIALAPSL-------PSSILPWIF 190
++GC++G GY + GR+ +L I V + AL + P ++ F
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS-ALGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 191 TG-RILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS--- 246
RI+ G+G G+ S +Y AE + H+RG L S F + G L Y + F++
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG 183
Query: 247 ---------WDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYD 297
W + A I +L ++ +PE+P +L+S+G+++ LR++ N
Sbjct: 184 DASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-L 242
Query: 298 VEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFY 357
+ +Q + + + IV I ++ + QF G+N V +Y
Sbjct: 243 ATQALQEIKHSLDHGRKTGGKLLMFGVGVIV---------IGVMLSVFQQFVGINVVLYY 293
Query: 358 AVNIFKDAGAHVNNNL-AAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 416
A IFK GA + L +I+G++ L FT+ + + + K GR+ L I ++G + M L
Sbjct: 294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL 353
Query: 417 GLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVG 476
G + + +L ++ + AA + + V WV++ E++P +RG
Sbjct: 354 GTAFYT-----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL 402
Query: 477 GLTTCACHFFIFLTVKSYNMFQTHLTKEGTF------LMYGCISLLGTIFFYVYLPETKN 530
+ A + ++ M + F +YGC+ +L +F + ++PETK
Sbjct: 403 AIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462
Query: 531 KTLQEIEEQFAGKSKK 546
KTL+E+E + ++KK
Sbjct: 463 KTLEEMEALWEPETKK 478
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 86.2 bits (214), Expect = 7e-18
Identities = 97/410 (23%), Positives = 168/410 (40%), Gaps = 48/410 (11%)
Query: 135 SLSAIGTMVGCVLGGYMMDLVGRKMTLIITE-VPTILGWALIALAPSLPSSILPWIFTGR 193
S +G ++G + GY+ D GRK L+++ V + G L A +P+ R
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGV-LTAFSPNYT-----VFLVFR 187
Query: 194 ILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-SWDTVAA 252
+L G+G G + + + E R ++ +L SLG++ + F+ W +
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQL 247
Query: 253 ISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQ 312
++ L + +PESP WL+SQGR + L+R+ N +K + S +
Sbjct: 248 AVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKING--KKLPAEVLSLSLEK 305
Query: 313 ETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNN 372
+ S+ L P K + LM+ + FS +Y + + N
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS------YYGLVLDL-GNLGGNIY 358
Query: 373 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432
L I G+V L + + +++ ++GRR S + GV+ L L +F D
Sbjct: 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVA---LLLLLFVPVD------L 409
Query: 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH-------F 485
+ L VL T+A + YL E+YPT VR + G+ + F
Sbjct: 410 YFLRTALAVLGKFGITSAFQMVYLYTA-----ELYPTVVRNLGVGVCSTMARVGSIISPF 464
Query: 486 FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535
++L K + +++G ++LL I ++LPETK L E
Sbjct: 465 LVYLGEKWLFL---------PLVLFGGLALLAGI-LTLFLPETKGVPLPE 504
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 72.0 bits (177), Expect = 2e-13
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 12/177 (6%)
Query: 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG 156
LG +G+ G + A L +++ ++ I S ++G +G +L GY+ D G
Sbjct: 6 LGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 157 RKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ 216
R+ L++ + LG L+A A SL + GR L GLG G + + AE
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLW-----LLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 217 PHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMP 269
P RG L S G LG L LG L W + I I+ +L + +
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 50.4 bits (121), Expect = 1e-06
Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 18/203 (8%)
Query: 324 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG--AHVNNNLAAVIMGIV 381
L A++ L+ ++L L F + F G + Y ++ + L + G+
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSF-GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG 223
Query: 382 RLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPV 441
++ + ++ ++GRR L + IG ++ GL L A S +
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLL--IGLLLAALGLLLLALAP-------------SLALL 268
Query: 442 LMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL 501
L+ + + E+ P + RG GL L +
Sbjct: 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
Query: 502 TKEGTFLMYGCISLLGTIFFYVY 524
G FL+ ++LL + +
Sbjct: 329 GYGGVFLILAALALLAALLLLLL 351
Score = 50.0 bits (120), Expect = 2e-06
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Query: 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKM 159
+ FG+ T + +++ E+ + SL +G ++G +LGG + D +GR+
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242
Query: 160 TLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHL 219
L++ L A + L + L + +L G G G +E + P
Sbjct: 243 LLLLIG----LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 220 RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMP 269
RG S L + SLG L L + V I + +L+ + L+P
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 31.1 bits (71), Expect = 1.6
Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 18/192 (9%)
Query: 336 FVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKK 395
++L L F + + + L + + ++ + + +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 396 MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIG- 454
GRR + + + + L AF S L +L++ F G
Sbjct: 61 FGRRRVLLLGLLLFALGSLLL-----------------AFASSLWLLLVGRFLLGLGGGA 103
Query: 455 YLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCIS 514
+I E +P K RG GL + L + L FL+ +
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163
Query: 515 LLGTIFFYVYLP 526
LL + L
Sbjct: 164 LLLALLLLFLLR 175
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 69.4 bits (170), Expect = 1e-12
Identities = 76/399 (19%), Positives = 129/399 (32%), Gaps = 63/399 (15%)
Query: 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG 156
L G+ A ++ D I+ E + + ++G + L G + D G
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 157 RKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ 216
R+ L+I + LG L+ A SL + R+L GLG G + + A+
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLW-----LLLVLRVLQGLGGGALFPAAAALIADWFP 115
Query: 217 PHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLS-IIAGCLMPES 271
P RG L S G LG LG L W I I+ +L+ ++A L+P
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175
Query: 272 PSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPA 331
P + K
Sbjct: 176 P-------------------------------------PESKRPKPAEEAPAPLVPAWKL 198
Query: 332 CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG-AHVNNNLAAVIMGIVRLIFTIASC 390
L+ V+ +L L+ + Y + G + + L + G++ I +
Sbjct: 199 LLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLG 258
Query: 391 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 450
+ ++GRR ++ + ++ GL L W L L+L+ F A
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLW----------LLVALLLLGFGAG 308
Query: 451 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFL 489
L ++ ++ P + RG GL A L
Sbjct: 309 LVFPAL---NALVSDLAPKEERGTASGLYNTAGSLGGAL 344
Score = 29.7 bits (67), Expect = 4.5
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 18/194 (9%)
Query: 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431
L + + + + + GRR + I + + + L
Sbjct: 35 GLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLL--------------- 79
Query: 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPW-VMIGEVYPTKVRGIVGGLTTCACHFFIFLT 490
F S L +L+++ G L +I + +P + RG GL + L
Sbjct: 80 --LFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALG 137
Query: 491 VKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSE 550
+ + FL+ ++LL + + LP ++ + + A +
Sbjct: 138 PLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
Query: 551 IYVKPSQQKLILSS 564
+ ++ L+L+
Sbjct: 198 LLLRDPVLWLLLAL 211
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 62.4 bits (152), Expect = 2e-10
Identities = 75/389 (19%), Positives = 140/389 (35%), Gaps = 68/389 (17%)
Query: 104 MVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII 163
GF+A A S + + + ++ S IG G + G + D +GR+ L+
Sbjct: 34 AAMGFAAPAISA------EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLW 87
Query: 164 TEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGML 223
+ + + L ALA ++ + I R L GLG G + +E + RG
Sbjct: 88 SILLFSVFTLLCALATNVTQLL---IL--RFLAGLGLGGLMPNLNALVSEYAPKRFRGTA 142
Query: 224 SSLASFGVSLGVLFEYSLGAFLS--------WDTVAAISTIIPVLSIIAGCLM---PESP 272
L G +G ++G FL+ W ++ + I P+ ++ LM PES
Sbjct: 143 VGLMFCGYPIG----AAVGGFLAGWLIPVFGWRSLFYVGGIAPL--LLLLLLMRFLPESI 196
Query: 273 SWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPAC 332
+L+S+ R + A ++ E Q K + K + A+ +
Sbjct: 197 DFLVSKRP----ETVRRIVNAIAPQMQAEAQSALPEQKATQGTK----RSVFKALFQGKT 248
Query: 333 LKPFVILMLYFLIYQFSGVNPVTFYAVNIF-----KDAGAHVNNNLAAVIMGIVR---LI 384
+ V+L L + + V Y + + + G + +LAA + +I
Sbjct: 249 ARITVLLWLLY------FMLLVGVYFLTNWLPKLMVELGF--SLSLAATGGALFNFGGVI 300
Query: 385 FTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML 444
+I + ++G R + +G V +G +F+ +L+
Sbjct: 301 GSIIFGWLADRLGPRVTALLLLLG-AVFAVLVGSTLFSPTLL--------------LLLG 345
Query: 445 MTFTAASTIGYLVVPWVMIGEVYPTKVRG 473
G + +M YPT +R
Sbjct: 346 AIAGFFVNGGQSGLYALM-ALFYPTAIRA 373
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 58.4 bits (141), Expect = 5e-09
Identities = 68/366 (18%), Positives = 130/366 (35%), Gaps = 47/366 (12%)
Query: 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP 182
+ +T+ ++ + S + I G ++ G D GR++ ++ + V G AP
Sbjct: 42 FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101
Query: 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFE---Y 239
+ +F R++ G+G G S Y E HLR S L G ++G + Y
Sbjct: 102 T-----MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY 156
Query: 240 SLGAF---LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNY 296
SL W + IS + + ++ +PE+ W K R + L
Sbjct: 157 SLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGG-- 214
Query: 297 DVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTF 356
E + + AA+V+ A + + L L+ + +
Sbjct: 215 ----------------EHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQ 258
Query: 357 YAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCI---MMKKMGRRSLTFISSIGCGVSM 413
+ + A ++ + A I+ + + C+ + +GRR + C +
Sbjct: 259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----KAYVCSLLA 313
Query: 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRG 473
L + P + A V+ L + + I + ++P +GE +PT R
Sbjct: 314 GQLLII--------PVFAIGANVAVLGLGLFFQQMLVQGI-WGILP-KHLGEYFPTDQRA 363
Query: 474 IVGGLT 479
G T
Sbjct: 364 AGLGFT 369
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 55.1 bits (133), Expect = 6e-08
Identities = 102/468 (21%), Positives = 171/468 (36%), Gaps = 101/468 (21%)
Query: 137 SAIGTMVGCVLGGYMMDLVGRK----MTLIITEVPTILGWALIALAPSLPSSILPWIFTG 192
++IGT+ G + G++ D +GRK M LII + T+ A S P S++ +
Sbjct: 65 ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATV---ASGLSPGSSPKSVMATLCFW 121
Query: 193 RILTGLGSGMVGAPSRIYTAECSQPHLRGMLSS----------LASFGVSLGVL--FEYS 240
R G+G G S I T+E + RG + + LA V+L VL F++S
Sbjct: 122 RFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHS 181
Query: 241 L-----GAFLSWDTVAAISTIIPVL---SIIAGCL-------MPESPSWLLSQGRKDACR 285
L A + V A+ + +L + L +PE+P + +
Sbjct: 182 LEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD---- 237
Query: 286 NSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPF------VIL 339
+ D+ +Q E ++ E +K+ E A F +L
Sbjct: 238 -----VEQAASDMSAVLQVKIE-AEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLL 291
Query: 340 ---MLYFLIYQFSGVNPVTFYAVN-----IFKDAG---AHVNNNLAAVIMGIVR--LIFT 386
+FL+ + FY VN I G NN + LI
Sbjct: 292 GTAGSWFLL-------DIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIA 344
Query: 387 IASCI--------MMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 438
+A + ++ +GR+ + + V LG FA + F Y
Sbjct: 345 LAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG---FAYNH-LSTHGF--LAIY 398
Query: 439 LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHF------FIFLTVK 492
+ F +T +VP GEV+PT+ R G++ + F FL +
Sbjct: 399 VLAQFFANFGPNATT--FIVP----GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLA 452
Query: 493 SYN----MFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEI 536
+ + T + ++ LG I F + +PETK K+L+E+
Sbjct: 453 QHGDPTKGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEEL 499
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 54.2 bits (131), Expect = 1e-07
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
W S +G + G +LGG + D +GRK LI+ ++ + L +LA + P +
Sbjct: 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIV----SVALFGLFSLATAQAWD-FPSLLV 108
Query: 192 GRILTGLGSGMVGA-PSRI-YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS--- 246
R+LTG+G G GA P+ I T+E P LRG SL GV G +G +
Sbjct: 109 ARLLTGVGLG--GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA 166
Query: 247 -WDTVAAISTIIPVLSI-IAGCLMPESPSWLLSQGRKDACRNSLRRL 291
W + + + P+L + + +PES ++ + G LR L
Sbjct: 167 AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRAL 213
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 49.2 bits (117), Expect = 5e-06
Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 22/188 (11%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
I + + +G MVG G + D +GRK L+I A S
Sbjct: 199 IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN----GFFAFFSSFVQG 254
Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRG-MLSSLASFGVSLGVL------- 236
++F R+L+G G G Y AE RG LS L F + G+
Sbjct: 255 YGFFLFC-RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313
Query: 237 ------FEYSLGA---FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNS 287
+ + +G+ F SW + V +I A MPESP + L G+ D
Sbjct: 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMI 373
Query: 288 LRRLRANN 295
L+ + N
Sbjct: 374 LKLIHDTN 381
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 45.0 bits (107), Expect = 1e-05
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 131 TWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190
+ + A+G ++ L G + D GRK L++ +L A+ AL+ ++ +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV-----LI 55
Query: 191 TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS-WDT 249
R L G G+ A+ P RG+ L S G++LG L LG L+ +
Sbjct: 56 IARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115
Query: 250 VAAISTIIPVLSIIAG----CLMPES 271
A + +L++ A L+PE+
Sbjct: 116 WRAPFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 47.3 bits (113), Expect = 2e-05
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 143 VGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPW----IFTGRILTGL 198
+G ++ G+ D +GRK TL+IT + +G LI L PS ++I W + R++ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSY-ATIGIWAPILLLLARLIQGF 108
Query: 199 GSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSW 247
G + +Y AE + P RG S G +G+L LS+
Sbjct: 109 SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
Score = 31.5 bits (72), Expect = 1.4
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 128 DESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII-TEVPTILGW-ALIALAPSLPSSI 185
+ + + LS I + L G + D +GR+ LII T + +L L+AL S ++
Sbjct: 255 NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTL 314
Query: 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLA 227
F + L GM P + E +R +SLA
Sbjct: 315 ---FFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLA 353
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 44.5 bits (106), Expect = 1e-04
Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 21/186 (11%)
Query: 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCV 146
L+L LA FA G I+ D ++ + + + A+G +G
Sbjct: 16 LALALAAFA------IGTTEFVPVGLLPP-IAAD--LGVSEGAAGQLITAYALGVALGAP 66
Query: 147 LGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAP 206
L + + R+ L+ I+ L ALAPS +L R L GL G+ +
Sbjct: 67 LLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLL-----ARALAGLAHGVFWSI 121
Query: 207 SRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS----WDTVAAISTIIPVLSI 262
+ A P RG +L G++L + LG FL W I VL++
Sbjct: 122 AAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL---AIAVLAL 178
Query: 263 IAGCLM 268
+A L+
Sbjct: 179 LALLLL 184
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 39.5 bits (93), Expect = 0.004
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 104 MVFGFSAAATSQ-LISRDSPYRITSDESTWIASLSAIGT---M--VGC-VLGGYMMDLVG 156
+FGF A A ++ + + ++ + + + G M +G VLG Y +D VG
Sbjct: 32 FLFGFYATAIAKTFFPAGNEF------ASLMLTFAVFGAGFLMRPLGAIVLGAY-IDRVG 84
Query: 157 RKMTLIITEVPTILGWALIALAPS-----LPSSILPWIFTGRILTGLGSGM-VGAPSRIY 210
R+ LI+T G LIA P L + +L + GR+L G +G+ +G S +Y
Sbjct: 85 RRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLL--VLLGRLLQGFSAGVELGGVS-VY 141
Query: 211 TAECSQPHLRGMLSSLASFGVSLGVLFE----YSLGAFLSWDTVAAISTIIPVLSIIAGC 266
AE + P +G +S S + V+F Y L +LS +A IP L GC
Sbjct: 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFL---IGC 198
Query: 267 L 267
L
Sbjct: 199 L 199
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 38.7 bits (91), Expect = 0.006
Identities = 23/160 (14%), Positives = 58/160 (36%), Gaps = 29/160 (18%)
Query: 313 ETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGV---NPVTFYAVNIFKDAGAHV 369
E ++ + ++ A+ + +P +IL+L +L+ + + +Y + +AG
Sbjct: 204 EQKEKVSLRDMFKALFK---NRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGLFS 260
Query: 370 NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429
L I I+ + K+ G++ + + + + + L+ W
Sbjct: 261 VLLLIGTIAAILGAPLWPW---LAKRFGKKRTFLLGMLLAAIGL--VLLFFLPPGSLW-- 313
Query: 430 YKFPAFVSYLPVLMLMTFTAASTIGY---LVVPWVMIGEV 466
+ + + IG ++PW M+ +V
Sbjct: 314 -------------LFLVLVVLAGIGLGLATLLPWAMLADV 340
Score = 29.9 bits (68), Expect = 4.5
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 131 TWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190
+ + + I ++G L ++ G+K T ++ + +G L+ LP L
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF---LPPGSLWLFL 316
Query: 191 TGRILTGLGSGMV 203
+L G+G G+
Sbjct: 317 VLVVLAGIGLGLA 329
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 36.5 bits (85), Expect = 0.031
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 19/162 (11%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
+++ + ++ S + G +VG GG+++D G + TL + I+ W + + +
Sbjct: 26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV----FIVIWGVFTGLQAFAGA 81
Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF 244
++ R+L G + A R S+ + LG + G
Sbjct: 82 Y-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII---GGPL 137
Query: 245 LSWDTVA----AISTIIPVLSIIAGCLM-------PESPSWL 275
+ W + I VL II G L P+ WL
Sbjct: 138 VGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL 179
Score = 28.8 bits (65), Expect = 8.6
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII--TEVPTILGWALIALAPSLP 182
++ E+ ++ASL I +G +LGG + DL+ R+ ++ + I G L L +
Sbjct: 248 LSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN 307
Query: 183 SSILPWIFTGRILTGLGSGMVGA 205
+P+ L + G G
Sbjct: 308 YVNIPYA----ALALVALGFFGL 326
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 36.5 bits (85), Expect = 0.034
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 34/161 (21%)
Query: 334 KPFVILMLYFLIYQFSGVN----PVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
+P ++L+L L+ F N + +Y + D L A G LI I
Sbjct: 236 RPLLLLLLMNLLL-FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLA--SGAGLLIGLILW 292
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
++KK G++ L I GL L + F V++++
Sbjct: 293 PRLVKKFGKKKLFLI----------GLLLLAVGYLLLY-------FTPAGSVVLIVVALI 335
Query: 450 ASTIGYLVV---PWVMIGEV-----YPTKVR--GIVGGLTT 480
+ +G + PW M+ + + T VR GIV T
Sbjct: 336 IAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT 376
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 36.3 bits (84), Expect = 0.035
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 136 LSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRIL 195
L IG + +GG + D G + ++ + LG+ A+A SL + L + L
Sbjct: 46 LLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY-----GL 100
Query: 196 TGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVL 236
G G + + TA P RG+ S + G LG
Sbjct: 101 ASAGVG-IAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSF 140
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 34.3 bits (79), Expect = 0.18
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 144 GCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMV 203
G +LG M D GR++ ++I+ V +G AP + +F R++ G+ GM
Sbjct: 72 GLLLGA-MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWT-----LFIARLVIGM--GMA 123
Query: 204 G--APSRIYTAECSQPHLRGMLSSLASFGVSLGVL 236
G S Y E HLR S G S+G +
Sbjct: 124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV 158
Score = 29.3 bits (66), Expect = 6.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 133 IASLSAIGTMVGCVLGGYMMDLVG-RK---MTLIITEVPTI 169
+ S G VGC +GG++ D +G RK +L+I+++ I
Sbjct: 316 VLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLII 356
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 33.1 bits (74), Expect = 0.35
Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 5/163 (3%)
Query: 108 FSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167
+ L+ + S +G +G +L G + D GR+ LII +
Sbjct: 19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL 78
Query: 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLR--GMLSS 225
+LG L+ALAP++ L + R+L GLG G + + +E +
Sbjct: 79 FLLGTLLLALAPNVG---LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGL 135
Query: 226 LASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLM 268
+ +LG+ L L + + +++ L+
Sbjct: 136 VTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLL 178
>gnl|CDD|226054 COG3523, IcmF, Type VI protein secretion system component VasK
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1188
Score = 33.5 bits (77), Expect = 0.42
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK---VRGIVGGLTTCACHFFIFL 489
P + L + L+ A + P + +G+V+P + R + GL ++
Sbjct: 6 PLLLVALWIWSLLGVLALCVAVWFAGPLLEVGDVWPLESLAARLLAIGLIVLVW--LLYS 63
Query: 490 TVKSYNM 496
T++ +
Sbjct: 64 TIRLWRA 70
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 31.9 bits (73), Expect = 0.81
Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 24/189 (12%)
Query: 67 GSPVRLRLLRATKAG-----GQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDS 121
+ +LR T+ G + +L L +VF + A +
Sbjct: 188 IQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLF------NLVFAPAIVALFPYVQSKY 241
Query: 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSL 181
S W+ + +G ++G +L G L+GR + + G + L
Sbjct: 242 L-GRGSTHYGWVLAAFGLGALLGALLLG----LLGRYFKRM----ALMTGAIFVIGLAIL 292
Query: 182 PSSILPWIFTGRILTGLGSGMVGAPSRI----YTAECSQPHLRGMLSSLASFGVSLGVLF 237
+ P F ++ G+ P + L G +
Sbjct: 293 VVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL 352
Query: 238 EYSLGAFLS 246
L L+
Sbjct: 353 GLILAGPLA 361
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 31.9 bits (73), Expect = 1.0
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 128 DESTWIASLSAIGTMV--GCVLGGYMMDLV-GRKMTLIITEVPTILGWALIALAPSLPSS 184
DE+ SA G++V ++GG++ D V G + T+++ + +G ++A+ S+
Sbjct: 59 DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI-SSVSG- 116
Query: 185 ILPWIFTGRILTGLGSGMV 203
++ G L +G+G+
Sbjct: 117 -PGGLYIGLALIIVGTGLF 134
>gnl|CDD|201317 pfam00576, Transthyretin, HIUase/Transthyretin family. This family
includes transthyretin that is a thyroid hormone-binding
protein that transports thyroxine from the bloodstream
to the brain. However, most of the sequences listed in
this family do not bind thyroid hormones. They are
actually enzymes of the purine catabolism that catalyze
the conversion of 5-hydroxyisourate (HIU) to OHCU. HIU
hydrolysis is the original function of the family and is
conserved from bacteria to mammals; transthyretins arose
by gene duplications in the vertebrate lineage. HIUases
are distinguished in the alignment from the conserved
C-terminal YRGS sequence.
Length = 111
Score = 29.9 bits (68), Expect = 1.2
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 417 GLY--IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVP 459
G Y F T D++ P F+ Y+PV F A + VP
Sbjct: 58 GTYRLEFDTGDYFKALGVPPFLPYVPV----VFGIADAGEHYHVP 98
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 31.4 bits (71), Expect = 1.4
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
+T E ++A+ + IG G L G + D GRK ++ + V +G L LA +
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLG-VLFEYSLGA 243
L R + G+G A + Y E HL+ S+ G +G ++ Y + +
Sbjct: 110 TL-----SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164
Query: 244 F---LSWDTVAAISTIIPVLSIIAGCLMPESPSW 274
F W + + +L I PES W
Sbjct: 165 FAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 31.3 bits (71), Expect = 1.4
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 147 LGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAP 206
+ G+ +D G ++ ++ + LGW L A A SLP+ ++ ++ G+G+G V
Sbjct: 57 IEGWFVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPA-----LYAAAVVAGIGAGAVYGT 111
Query: 207 SRIYTAECSQPHLRGMLSSLASFGVSLGVL 236
+ A P RG+ + L + G G
Sbjct: 112 C-VGNALKWFPDKRGLAAGLTAAGFGAGAA 140
>gnl|CDD|226525 COG4038, COG4038, Predicted membrane protein [Function unknown].
Length = 87
Score = 28.3 bits (63), Expect = 3.1
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 188 WIFTGRILTGLGS-GMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS 246
++TG + LG+ G P+R S P ++ + L + GVSL L L A ++
Sbjct: 7 ILYTGAFMIILGTLGAAIGPAR------SDPVVKSLNLELPTVGVSLIFLAYNHLLALIT 60
Query: 247 WDTVAAISTIIPVLSII 263
+ V A +T+I + ++I
Sbjct: 61 FIAVGAFTTLILMRAVI 77
>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional.
Length = 448
Score = 30.1 bits (68), Expect = 3.3
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 130 STWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWI 189
+ + + +GT+ L M+ +G+K T +I + G+ L S LP
Sbjct: 266 TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS--VWS-LPVA 322
Query: 190 FTGRILTGLGSGMVG-------APSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLG 242
+ +G G+ A + Y + + G+ SL SF G S+
Sbjct: 323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382
Query: 243 AFL 245
AF+
Sbjct: 383 AFI 385
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 30.0 bits (68), Expect = 3.5
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVG-RKMTLIITEVPTILGWALIALAPSLPSS 184
+ + W+ + + + L G++ G R++ LI T T+ L +AP+L
Sbjct: 35 SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL-LCGVAPNLE-- 91
Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF 244
+ R++ G G G + S P RG ++ V + +LG +
Sbjct: 92 ---LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148
Query: 245 LS 246
+
Sbjct: 149 II 150
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase.
Length = 502
Score = 30.3 bits (68), Expect = 3.6
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 283 ACRNSLRRLRANNYDVEKEVQGLYEFSKRQE-TQKSRNFKETLAAIVE 329
A + + RLRA V +++G E S+RQ ++ +N KE L + E
Sbjct: 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEE 151
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 29.9 bits (68), Expect = 3.9
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 167 PTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAP 206
P + G L ALA + S W+ G L G G+ A
Sbjct: 290 PMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAG 329
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 30.0 bits (68), Expect = 4.2
Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 37/173 (21%)
Query: 317 SRNFKETLAAIVEPACLKPFVILMLY---------FLIYQFSGVNPVT-------FYAVN 360
R FK+ L P LK ++LY FL +F G + + +
Sbjct: 393 LRYFKKRL-----PEGLKKLGKILLYLGISTIIWGFLYGEFFGPAVLLSTLPIGLLFVYH 447
Query: 361 IFKDAGAHVNNNLAAVIMGIVRLIF-TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLY 419
+ N + ++++G++ L + I + G + + + + GL L
Sbjct: 448 GLDEGLLFSNILILSLLIGVLHLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLL 507
Query: 420 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVV------PWVMIGEV 466
I K PE F A +G LVV V IG+
Sbjct: 508 ILGYKWSVPELLGMV---------GAMFGAFGILGLLVVGLILVPGLVAIGQG 551
>gnl|CDD|204928 pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein. This
family of proteins is found in bacteria. Proteins in
this family are approximately 50 amino acids in length.
There are two completely conserved residues (L and Y)
that may be functionally important.
Length = 42
Score = 26.3 bits (59), Expect = 4.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 336 FVILMLYFLIYQFSGVNPVTF 356
F+IL+ +Y +SG+ TF
Sbjct: 18 FLILLALIYLYGYSGIGQGTF 38
>gnl|CDD|145936 pfam03052, Adeno_52K, Adenoviral protein L1 52/55-kDa. The
adenoviral protein L1 52/55-kDa is expressed in both the
early and late stages of infection which suggests that
it could play multiple roles in the viral life cycle.
The L1 52/55 kDa protein interacts with the viral IVa2
protein and is required for DNA packaging. L1 53/55-kDa
is required to mediate stable association between the
viral DNA and empty capsid.
Length = 198
Score = 29.0 bits (65), Expect = 4.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 293 ANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFL 344
A + V E+ YE ++ E +F++T V +P + L LY+L
Sbjct: 77 AQAHMVAAELHRAYEQTEVYEV----SFQDTFNNHVRTLLWRPELPLGLYYL 124
>gnl|CDD|227393 COG5061, ERO1, Oxidoreductin, endoplasmic reticulum
membrane-associated protein involved in disulfide bond
formation [Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 425
Score = 29.5 bits (66), Expect = 4.9
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 493 SYNMFQTHLTKEGTF-------LMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSK 545
++F+ H K F + C +IF VY+ +L E E+F G
Sbjct: 100 KLSLFKPHSKKLDQFCSESKCPDLSYCYVDNKSIFNDVYI------SLLENPERFTGYKG 153
Query: 546 KHHSEIYVKPSQQKLILSSDDLITSEKPKAINLLRWLH 583
H +EI+ K +Q + EK L+ H
Sbjct: 154 NHSAEIWRKIYEQNCFDTLLPPTLLEKRMFYRLVSGFH 191
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 29.3 bits (66), Expect = 5.9
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
++ + + S +I + + G + D ++ L I ++ A++ L +S
Sbjct: 27 LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI----GLILCAIVNLFFGFSTS 82
Query: 185 ILPWIFTG-RILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLG-----VLFE 238
+ W+ L G+ GM P + RG S + ++G L
Sbjct: 83 L--WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVL 140
Query: 239 YSLGAFLSWDTVAAISTIIPVL-SIIAGCLMPESP 272
+ + SW V + II ++ S+I L+ +SP
Sbjct: 141 FGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 29.1 bits (66), Expect = 6.2
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185
+ +++ S++ ++G +L ++ GRK+ + +LG+ + S
Sbjct: 255 DPELFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF----FFAGSN 310
Query: 186 LPWIFTGRILTGLGSGMVGA 205
LP I IL G G V
Sbjct: 311 LPLILVLIILAGFGQNFVTG 330
>gnl|CDD|107372 cd06377, PBP1_iGluR_NMDA_NR3, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the NR3 subunit of NMDA receptor family.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the NR3 subunit of NMDA receptor
family. The ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptor serves critical functions
in neuronal development, functioning, and degeneration
in the mammalian central nervous system. The functional
NMDA receptor is a heterotetramer composed of two NR1
and two NR2 (A, B, C, and D) or of NR3 (A and B)
subunits. The receptor controls a cation channel that is
highly permeable to monovalent ions and calcium and
exhibits voltage-dependent inhibition by magnesium. Dual
agonists, glutamate and glycine, are required for
efficient activation of the NMDA receptor. Among NMDA
receptor subtypes, the NR2B subunit containing receptors
appear particularly important for pain perception; thus
NR2B-selective antagonists may be useful in the
treatment of chronic pain.
Length = 382
Score = 29.4 bits (66), Expect = 6.3
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 219 LRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWL 275
LR + ++ GVS + F + + D V+A + IPV+SI+ S +
Sbjct: 70 LRSVCQTVVVQGVSALLAFPQTRPELVQLDFVSA-ALEIPVVSIVRREFPRGSQNPF 125
>gnl|CDD|171532 PRK12482, PRK12482, flagellar motor protein MotA; Provisional.
Length = 287
Score = 28.9 bits (65), Expect = 7.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 142 MVGCVLGGYMMDLVGRKMTLII--TEVPTILGWALIALAPSLPSSIL 186
++GCV GGY+M G ++ I E+ ILG + A+ P S+L
Sbjct: 10 VMGCVFGGYLMS--GGSLSSIWQPGEIIIILGAGIGAMILGNPKSVL 54
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing
protein 8. PNPLA8 is a Ca-independent myocardial
phospholipase which maintains mitochondrial integrity.
PNPLA8 is also known as iPLA2-gamma. In humans, it is
predominantly expressed in heart tissue. iPLA2-gamma can
catalyze both phospholipase A1 and A2 reactions (PLA1
and PLA2 respectively). This family includes PNPLA8
(iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus
musculus.
Length = 308
Score = 28.8 bits (65), Expect = 8.6
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 304 GLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLI-----YQFSGVNPVTFYA 358
G Y S R ET + K L +++ A V L L+ ++F NPV
Sbjct: 227 GRYPSSVRLETGGYTSLKTKLLNLIDSATDTERVHTALDDLLPPDVYFRF---NPVMSEC 283
Query: 359 VNI 361
V +
Sbjct: 284 VEL 286
>gnl|CDD|236849 PRK11109, PRK11109, bifunctional PTS system fructose-specific
transporter subunit IIA/HPr protein; Provisional.
Length = 375
Score = 28.8 bits (65), Expect = 9.1
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 35/144 (24%)
Query: 10 LKQVAAAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIGEG-----SLKG 64
L+ + A G V+ V +++I+ + +G+G S +G
Sbjct: 167 LQALNAGRLKEAGAVDATFV--------AKVINS---------KPLNLGQGIWLSDSAEG 209
Query: 65 IWGSPVRL-RLLRATKAGGQKVSLSLTLAV-----FANLGNVNTGMVFGFSAAATSQLIS 118
S V + R A + G+ V+L LT+A A L + + ++ A +L+S
Sbjct: 210 NLRSAVAVSRAANAFEVDGEPVALLLTVAAADDQPLAVLKRL-SDLLLAQKAD---RLLS 265
Query: 119 RDSPYRI---TSDESTWIASLSAI 139
D+ + TS+++ LSA
Sbjct: 266 ADAATLLALLTSEDAETDDVLSAE 289
>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease. This family
describes the L-fucose permease in bacteria.
L-fucose(6-deoxy-L-galactose) is a monosaccharide found
in glycoproteins and cell wall polysaccharides. L-fucose
is used in bacteria through an inducible pathway
mediated by atleast four enzymes: a permease, isomerase,
kinase and an aldolase which are encoded by fucP, fucI,
fucK, fucA respectively. The fuc genes belong to a
regulon comprising of four linked operons: fucO, fucA,
fucPIK and fucR. The positive regulator is encoded by
fucR, whose protein responds to fuculose-1-phosphate,
which acts as an effector [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 408
Score = 28.7 bits (64), Expect = 9.8
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 335 PFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIA--SCIM 392
PF ++ F ++ F+ N +T V F+ A A V F +A + I
Sbjct: 4 PFALITSLFALWGFA--NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIF 61
Query: 393 MKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTF 447
MKK+ S G+ + GL LY FWP + + +L L ++T
Sbjct: 62 MKKL---------SYKAGI-LLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTA 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.410
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,640,298
Number of extensions: 2951402
Number of successful extensions: 3384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3293
Number of HSP's successfully gapped: 174
Length of query: 587
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 485
Effective length of database: 6,413,494
Effective search space: 3110544590
Effective search space used: 3110544590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.6 bits)