RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11547
(587 letters)
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 41.8 bits (98), Expect = 4e-04
Identities = 55/416 (13%), Positives = 117/416 (28%), Gaps = 64/416 (15%)
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
I + ++ +++ L G + D +G + L+ + +L + I
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI-ITGMLVMFAPFFIFIFGPLLQYNILV 105
Query: 192 GRILTGLGSGMVGAPSRIYTAECSQPHLR------GMLSSLASFGVSLGVLFEYSLGAFL 245
G I+ G+ G + R G G +LG +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165
Query: 246 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGL 305
+ S +L+++ ++PS
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVA--------------------------- 198
Query: 306 YEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA 365
+ + + K L +P + ++ Y F+ + F
Sbjct: 199 ---NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG 254
Query: 366 GAHVNNNLAAVIMGIVRLIFTIASCIMMKKMG----RRSLTFISSIGCGVSMTGLGLYIF 421
+ G V + + + +M R + + + F
Sbjct: 255 EQ------GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308
Query: 422 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481
AT S L V++L T LV + I + + + + C
Sbjct: 309 AT-------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355
Query: 482 ACHFF--IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535
IF++V + NM++ + +G +L+ G ++L T+ L +L
Sbjct: 356 FFKQLAMIFMSVLAGNMYE-SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 9e-04
Identities = 57/364 (15%), Positives = 102/364 (28%), Gaps = 129/364 (35%)
Query: 166 VPTILGWALIAL---------APSL-------PSSILPWIFTGRILTGLGSGMVGAPSRI 209
VPT + L P+ P++ G+ L
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--LVGKFLG------------- 66
Query: 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWD---TVAA------ISTIIPVL 260
Y + +P S + F L + +L + +AA +T++
Sbjct: 67 YVSSLVEP------SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 261 SII-----AGCLM-----PESPSWLLSQGRKDACRNSLRRLRA------NNYDVEKEVQG 304
+I A + +S S L A +L A N D +E++
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALF-----RAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILM---LYFLIYQFSGVNPVTFYAVNI 361
LY+ + + L LI V +NI
Sbjct: 176 LYQ--------------------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 362 FK----DAGAHVNNNLAAV-----IMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVS 412
+ + + L ++ ++G+++L + + K +G S + G +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA---KLLGFTPGELRSYL-KGAT 271
Query: 413 MTGLGLY---IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIG----E 465
GL A D W + F + + VL F + IG E
Sbjct: 272 GHSQGLVTAVAIAETDSWESF-FVSVRKAITVL----F------------F--IGVRCYE 312
Query: 466 VYPT 469
YP
Sbjct: 313 AYPN 316
Score = 38.5 bits (89), Expect = 0.008
Identities = 48/304 (15%), Positives = 79/304 (25%), Gaps = 124/304 (40%)
Query: 10 LKQVAA-AVFANLGNVNTGMVFGF------------SAAATSQLISRDSPYRITSDEST- 55
+ Q+A V A L G + + +A A ++ S +S + T
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 56 --WIG------------------------EG------SLKGIWGSPV--RLRLLRATKAG 81
+IG EG S+ + V + +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 82 GQKVSLSLTLAVFANLGNVNTGMVF----------GFS------AAATSQLISRD----- 120
G++V +SL VN G + A + SR
Sbjct: 363 GKQVEISL----------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 121 ----------------SPY------RITSD--ESTWIASLSAIGTMVGCVLGGYMMDLVG 156
S I D ++ + I V G DL
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS--DL-- 468
Query: 157 RKMTLIITE--VPTILG----WA---------LIALAPSLPSSILPWIFTGRILTGLGSG 201
R ++ I+E V I+ W ++ P S + T R G G
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV--LTHRNKDGTGVR 526
Query: 202 MVGA 205
++ A
Sbjct: 527 VIVA 530
Score = 37.0 bits (85), Expect = 0.024
Identities = 55/307 (17%), Positives = 92/307 (29%), Gaps = 106/307 (34%)
Query: 13 VAAAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIGEGSLKGIWGSPVRL 72
A V+ N + + +GFS I ++P +T I G KG R+
Sbjct: 1641 AAQDVW-NRADNHFKDTYGFSILD----IVINNPVNLT------IHFGGEKG-----KRI 1684
Query: 73 R-----LLRATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAA---ATS--Q----LIS 118
R ++ T G+ + +F + +T F AT Q L+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEK----IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 119 RDSPYRI-----TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWA 173
+ + + A S LG Y A
Sbjct: 1741 K-AAFEDLKSKGLIPADATFAGHS---------LGEY-----------------A----A 1769
Query: 174 LIALAPSLP-SSILPWIFT-GRILT---------GLGSGMVGA-PSRIYTAECSQPHLRG 221
L +LA + S++ +F G + GM+ P R+ A SQ L+
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV-AASFSQEALQY 1828
Query: 222 MLSSLASFGVSLGVLFE----------YSLGAFLSWDTVAAISTIIPVLSI-----IAGC 266
++ + G L E Y + A+ T+ VL+ I
Sbjct: 1829 VVERVGK---RTGWLVEIVNYNVENQQYVAAG-----DLRALDTVTNVLNFIKLQKIDII 1880
Query: 267 LMPESPS 273
+ +S S
Sbjct: 1881 ELQKSLS 1887
Score = 35.4 bits (81), Expect = 0.058
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 518 TIF-----FYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKPSQQKLILSSDDLITSEK 572
IF Y E L+++ + + +K S + L + +EK
Sbjct: 158 AIFGGQGNTDDYFEE-----LRDLYQTY-----HVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 573 --PKAINLLRWLH 583
+ +N+L WL
Sbjct: 208 VFTQGLNILEWLE 220
Score = 32.3 bits (73), Expect = 0.58
Identities = 46/287 (16%), Positives = 88/287 (30%), Gaps = 108/287 (37%)
Query: 287 SLRRLRANNYDVEKEV---QGLY--------EFSKRQETQKSRNFKETLAAIVEPACLKP 335
S R L ++ +E + + +F+K E AA EP
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-----EGFAADDEPTTP-- 57
Query: 336 FVILMLYFLIY--------QFSGVNPVTFYAVNIFKDAGAHVNN--NLAAVIMGIVR--- 382
L+ FL Y + + V + F++ N+ LAA ++
Sbjct: 58 -AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 383 -----LI--FTIASCIMMKKMGRRSLT-FISSIGCGVSMTGLGLY-IF----ATKDFWPE 429
LI + A + + ++S + ++G G + L IF T D++ E
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEE 172
Query: 430 ----YKFPAFVSYLPVLMLMTFTAASTI-------------------------------- 453
Y+ +Y ++ + +A T+
Sbjct: 173 LRDLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 454 -GYLV---VPWVMIGEV----Y----------PTKVRGIVGGLTTCA 482
YL+ + +IG + Y P ++R + G T +
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Score = 32.3 bits (73), Expect = 0.60
Identities = 49/309 (15%), Positives = 86/309 (27%), Gaps = 112/309 (36%)
Query: 32 FSAAATSQLISRDS-------PYR--ITSDESTWIGEGSLKGIWGSPVRL---------R 73
F A SQL ++ P DE T +P L
Sbjct: 27 FFIA--SQL--QEQFNKILPEPTEGFAADDEPT------------TPAELVGKFLGYVSS 70
Query: 74 LLRATKAGGQKVSLSLTLAVFAN--LG--NVNTGMVFGFSAAATSQLISRDSP---Y--- 123
L+ +K G L+L L F N L +++ + + L+ Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-LAAKLLQENDTTLVKTKELIKNYITA 129
Query: 124 RITSDESTWIASLSAIGTMVGC-------VLGG------YMMDLVGRKM----TLIITEV 166
RI + S SA+ VG + GG Y +L R + +++ ++
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--RDLYQTYHVLVGDL 187
Query: 167 PTILGWALIALAPSLPSS---------ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQP 217
L L + + IL W L + P + Y
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEW------LENPSN----TPDKDY------- 230
Query: 218 HLRGMLSSLASFGVSLGVLFEYSLGAFLS------------WDTVAAISTIIPVLSIIAG 265
L S +S ++ L ++ + + ++
Sbjct: 231 --------LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVTA 280
Query: 266 CLMPESPSW 274
+ E+ SW
Sbjct: 281 VAIAETDSW 289
Score = 28.9 bits (64), Expect = 7.0
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 346 YQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVR 382
Y+ S A +++ A H + I+ IV
Sbjct: 1636 YKTSKA------AQDVWNRADNHFKDTYGFSILDIVI 1666
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.006
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 269 PES-PSWLLSQG----RKDACRNSLR-RLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322
PES W Q DA + R EK + L E+++RQ Q +N
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWR------EKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 323 TLAA 326
A
Sbjct: 138 NRIA 141
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 35.4 bits (82), Expect = 0.045
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 5/145 (3%)
Query: 129 ESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPW 188
+S+W L + G +L G+M D V R L + P+
Sbjct: 289 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348
Query: 189 IFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSL-GVLFEYSLGAFL-- 245
I+ G ++ E + G + L G + ++ +
Sbjct: 349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408
Query: 246 --SWDTVAAISTIIPVLSIIAGCLM 268
WD + +L++I ++
Sbjct: 409 FFGWDGGFMVMIGGSILAVILLIVV 433
Score = 32.7 bits (75), Expect = 0.34
Identities = 68/426 (15%), Positives = 132/426 (30%), Gaps = 61/426 (14%)
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
+ S +I + G + D ++ L + + P SSI +F
Sbjct: 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI-AVMFV 124
Query: 192 GRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLG-----VLFEYSLGAFLS 246
L G GM P RG + S+ + ++G +LF + F
Sbjct: 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184
Query: 247 WDTV-AAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGL 305
W + ++++ A +M ++P + + + + D E
Sbjct: 185 WHAALYMPAFCAILVALFAFAMMRDTP--------QSCGLPPIEEYKNDYPDDYNEK--- 233
Query: 306 YEFSKRQETQKSRNFKETLA--AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK 363
++++ T K + L + A FV L+ Y ++ P V F
Sbjct: 234 ---AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS----PTYLKEVKHFA 286
Query: 364 DAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKM--GRRSLTFISSIGCGVSMTGLGLYIF 421
+ + A + + T+ M K+ G R T + + T +
Sbjct: 287 LDKS----SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP 342
Query: 422 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT-- 479
A + ++ M G +++ + E+ P K G G T
Sbjct: 343 AG-------------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389
Query: 480 ------TCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 533
+ A + TV + G F++ S+L I V + K +
Sbjct: 390 FGYLGGSVAASAIVGYTVDFFGWD-------GGFMVMIGGSILAVILLIVVMIGEKRRHE 442
Query: 534 QEIEEQ 539
Q ++E
Sbjct: 443 QLLQEL 448
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 35.3 bits (82), Expect = 0.053
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 6/162 (3%)
Query: 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLI 162
+ F A + + + ++S + + L G G M
Sbjct: 213 AGIAAFEACSGVLMGAV---LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQS 269
Query: 163 ITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGM 222
+ + G + + + + L G+GM+ + E P L G
Sbjct: 270 VI-CCLLAGLLMWIPDWFGVMN-VWTLLVPAALFFFGAGMLFPLATSGAME-PFPFLAGT 326
Query: 223 LSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIA 264
+L ++G SL A L ++ ++ ++ ++
Sbjct: 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLI 368
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.062
Identities = 49/367 (13%), Positives = 96/367 (26%), Gaps = 129/367 (35%)
Query: 285 RNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIV----EPACLKPF---- 336
R +L LR + + G+ K +A V + C F
Sbjct: 141 RQALLELRPAKNVL---IDGVLGSG-----------KTWVALDVCLSYKVQCKMDFKIFW 186
Query: 337 -----------VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIF 385
V+ ML L+YQ D +++ + ++ + RL
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDP-------NWTSRSDHSSNIKLRIHSIQAELRRL-- 237
Query: 386 TIASCIMMKKMGRRSL-------------TFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432
+ K L F ++ C + +T T+
Sbjct: 238 ------LKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLT--------TRFKQVTDFL 281
Query: 433 PAFVSYLPVL--MLMTFTAASTIGYLVVPWVMIGE---------VYPTKVRGIVGGLTTC 481
A + L MT T L++ ++ P ++ I +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 482 ACHFFIFLTV----------KSYNMFQTHLTKEGTFLMYGCISLLGTIFFY-VYLPETKN 530
+ + V S N+ + ++ M+ L ++F ++P
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK----MF--DRL--SVFPPSAHIPT--- 389
Query: 531 KTL------------QEIEEQFAGKS--KKHHSEIYVKPSQQKLILSSDDLITSEKPKAI 576
L + + S +K ++ +S + K K
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ---------PKESTISIPSIYLELKVKLE 440
Query: 577 NLLRWLH 583
N LH
Sbjct: 441 NEYA-LH 446
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 32.2 bits (73), Expect = 0.48
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 3/142 (2%)
Query: 105 VFGFSAAATSQLISR-DSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII 163
++ + L+ + + +T+ ++ I S G + + G +M + K +I
Sbjct: 37 LWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96
Query: 164 TEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGML 223
LG AL A + + G + G G + + +
Sbjct: 97 GLFLYALGAALFWPAAEIMN--YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154
Query: 224 SSLASFGVSLGVLFEYSLGAFL 245
+LA S G + G L
Sbjct: 155 LNLAQTFNSFGAIIAVVFGQSL 176
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 30.6 bits (69), Expect = 1.4
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 533 LQEIEEQFAGKSKKHHSEIYVKPSQQKLILSSDDLITSEKPKAINLL 579
L+++E F+ ++ + Q++ D L + K K ++++
Sbjct: 47 LEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVI 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.410
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,679,690
Number of extensions: 519421
Number of successful extensions: 877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 25
Length of query: 587
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 488
Effective length of database: 3,937,614
Effective search space: 1921555632
Effective search space used: 1921555632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.1 bits)