RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11547
         (587 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 77.0 bits (188), Expect = 1e-15
 Identities = 50/418 (11%), Positives = 107/418 (25%), Gaps = 33/418 (7%)

Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
            +  +  +  S  +I       + G + D    ++ L    +        +   P   SS
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF 244
           I   +F    L G   GM   P             RG + S+ +   ++G      L   
Sbjct: 116 I-AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174

Query: 245 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 304
                             +A      +  ++ +         +   +R            
Sbjct: 175 -----------------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 217

Query: 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD 364
            Y+     +  +    + T   I     L   ++  +         +          +  
Sbjct: 218 EYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 277

Query: 365 AGAHVNNN---LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIF 421
              H   +    A  +     +  T+    M  K+ R +          +      +Y  
Sbjct: 278 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW- 336

Query: 422 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481
                          +    ++ M        G +++  +   E+ P K  G   G T  
Sbjct: 337 ----------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 386

Query: 482 ACHFF-IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEE 538
             +                    +G F++    S+L  I   V +   K +  Q ++E
Sbjct: 387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 39/415 (9%), Positives = 106/415 (25%), Gaps = 52/415 (12%)

Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
           I+  ++  I +  ++ +++   L G + D +G +  L+      ++ +A   +    P  
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRG-----MLSSLASFGVSLGVLFEY 239
               +    +          A +    A   +   R              G +LG     
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 240 SLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVE 299
            +    +       S    +L+++      ++PS         A  ++     A      
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL--- 216

Query: 300 KEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAV 359
                                        +P      + ++     Y         F+  
Sbjct: 217 ---------------------------FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249

Query: 360 NIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLY 419
                            +  ++       + +++ ++G ++   ++     V +      
Sbjct: 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI------ 303

Query: 420 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRG-IVGGL 478
                         + +  + +  L  F        LV  +  I   +  +    I    
Sbjct: 304 -------IGSSFATSALEVVILKTLHMFEVP---FLLVGCFKYITSQFEVRFSATIYLVC 353

Query: 479 TTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 533
                   +             +  +G +L+ G ++L  T+     L      +L
Sbjct: 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408


>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 101

 Score = 27.2 bits (60), Expect = 1.8
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 529 KNKTLQEIEEQFAGKSKKHHSEIYVKPSQQKLI 561
              T+  ++E    +  +          + KLI
Sbjct: 27  DATTVSALKETVISEWPREKENGPKTVKEVKLI 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,067,932
Number of extensions: 92300
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 7
Length of query: 587
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 497
Effective length of database: 1,171,896
Effective search space: 582432312
Effective search space used: 582432312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.8 bits)