BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11549
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 10/221 (4%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
SL ++ V +G Y C A + G + L ++YAP S++ I + ++I
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQ-TIYYSWEGNPINIS 121
Query: 81 CAVEADPPARSFKWKFNN-SGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNA 139
C V+++PPA S W+ + + +L P ++ D+G +C A N
Sbjct: 122 CDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 140 IGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLP-QTFTLELYSAS 197
IGT+ Y + LA P P + + ++ +S P GG+P + +++ +
Sbjct: 181 IGTRFQE--YILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVA 238
Query: 198 XXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGR 238
L +L + T +RV + VN KG+
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRV--AAVNGKGQ 277
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 10/221 (4%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
SL ++ V +G Y C A + G + L ++YAP S++ I + ++I
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQ-TIYYSWEGNPINIS 121
Query: 81 CAVEADPPARSFKWKFNN-SGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNA 139
C V+++PPA S W+ + + +L P ++ D+G +C A N
Sbjct: 122 CDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 140 IGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLP-QTFTLELYSAS 197
IGT+ Y + LA P P + + ++ +S P GG+P + +++ +
Sbjct: 181 IGTRFQE--YILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVA 238
Query: 198 XXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGR 238
L +L + T +RV + VN KG+
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRV--AAVNGKGQ 277
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 12 SARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIV 69
S R+ LSN ++L L V+R +YKC N S+ + L V Y P + +
Sbjct: 154 SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNT 213
Query: 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDY 129
E++++ C ++PPA+ + W N + + L +T +
Sbjct: 214 SYRSGENLNLSCHAASNPPAQ-YSWFVNGTFQ------------QSTQELFIPNITVNNS 260
Query: 130 GTLSCAAQNA-IGTQVTPCLYQVVLAGKPQP--PQNCSVRNETTSSVHISCTP 179
G+ +C A N+ G T V A P+P N S E +V ++C P
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP 313
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 12 SARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDR 65
S R+ LSN ++L L V+R A Y C N+ S+ + L V Y P I D
Sbjct: 510 SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFN 97
+ GA ++++ C A P+ + W+ N
Sbjct: 570 SYLSGA----NLNLSCH-SASNPSPQYSWRIN 596
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 18/173 (10%)
Query: 12 SARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIV 69
S R+ LSN ++L L V+R G Y+C N S+ + L V Y P +
Sbjct: 332 SPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYT 391
Query: 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDY 129
++ + C ++PPA+ + W + + + L + +TE +
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQ-YSWLIDGNIQ------------QHTQELFISNITEKNS 438
Query: 130 GTLSCAAQN-AIGTQVTPCLYQVVLAGKPQP--PQNCSVRNETTSSVHISCTP 179
G +C A N A G T V A P+P N S E +V +C P
Sbjct: 439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP 491
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 57 YAPICKSD--RIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXX 114
Y P+ + + S E V + C A+PPA +++WK N G L +
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMN--GTELKMGPDSRYRLV 59
Query: 115 XXXMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
++ PV D G+ C A NA GT V+
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVS 90
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 4 GIPLAHNTSARIILSNQSLVLQK-VSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
G L +R L LV+ V + AG+Y+C A N +G S + LR +
Sbjct: 45 GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS 104
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNN 98
++ V + V C+ PA S++W N
Sbjct: 105 AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNE 140
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 8/136 (5%)
Query: 7 LAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRI 66
L + +++ + S L +Q V + GTY+C A N KG T Q ++ + P D I
Sbjct: 244 LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY-QGRIIIHAQPDWL-DVI 301
Query: 67 VIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTE 126
A + C V + P + +W G+ L LR++ +
Sbjct: 302 TDTEADIGSDLRWSC-VASGKPRPAVRWL--RDGQPL---ASQNRIEVSGGELRFSKLVL 355
Query: 127 LDYGTLSCAAQNAIGT 142
D G C A+N GT
Sbjct: 356 EDSGMYQCVAENKHGT 371
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Query: 16 ILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVG---- 70
+ N +L+++ V R S TY C A N +G + L+++V P RI+
Sbjct: 575 VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP-----RIIPFAFEEG 629
Query: 71 -ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDY 129
A + + +HC+V + W + + D+ +L V
Sbjct: 630 PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHA 689
Query: 130 GTLSCAAQNAIGTQ 143
G +C A+N G Q
Sbjct: 690 GNFTCHARNLAGHQ 703
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 30 QSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA 89
Q AGTY+C A N+ G S + KL+ Y K+ V R + + + C
Sbjct: 73 QDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGE 132
Query: 90 RSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNAI 140
S+ W FN D L V + D G +C N +
Sbjct: 133 LSYAWIFNEYPSYQD---NRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI 60
A G P+A AR SN L + ++ AG+Y+C A N++G+ + QL YA
Sbjct: 242 ADGKPIAR--KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF---YAQP 296
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLR 120
I + + ESV C P +++W N D L
Sbjct: 297 NWVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNG-----DPLLTRDRIQIEQGTLN 350
Query: 121 YTPVTELDYGTLSCAAQNAIG 141
T V D G C A+N G
Sbjct: 351 ITIVNLSDAGMYQCVAENKHG 371
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGT 131
S + V + C V+ +P +WK N G +D+ +L P D GT
Sbjct: 21 SEEKKVKLSCEVKGNPKPH-IRWKLN--GTDVDIGMDFRYSVVDGSLLINNPNKTQDAGT 77
Query: 132 LSCAAQNAIGTQVT 145
C A N+ GT V+
Sbjct: 78 YQCIATNSFGTIVS 91
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 30 QSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA 89
Q AGTY+C A N+ G S + KL+ Y K+ V R + + + C
Sbjct: 72 QDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGE 131
Query: 90 RSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNAI 140
S+ W FN D L V + D G +C N +
Sbjct: 132 LSYAWIFNEYPSYQD---NRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 179
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI 60
A G P+A AR SN L + ++ AG+Y+C A N++G+ + QL YA
Sbjct: 241 ADGKPIAR--KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF---YAQP 295
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLR 120
I + + ESV C P +++W N D L
Sbjct: 296 NWVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNG-----DPLLTRDRIQIEQGTLN 349
Query: 121 YTPVTELDYGTLSCAAQNAIG 141
T V D G C A+N G
Sbjct: 350 ITIVNLSDAGMYQCVAENKHG 370
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGT 131
S + V + C V+ +P +WK N G +D+ +L P D GT
Sbjct: 20 SEEKKVKLSCEVKGNPKPH-IRWKLN--GTDVDIGMDFRYSVVDGSLLINNPNKTQDAGT 76
Query: 132 LSCAAQNAIGTQVT 145
C A N+ GT V+
Sbjct: 77 YQCIATNSFGTIVS 90
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 12 SARIILSNQSLVLQKV-----SRQSAGTYKCSAINTKGEATSNQLKLRV-------KYAP 59
S R++L + SL ++ SR G Y C A N GEA S+ L V + P
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP 118
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXML 119
SD +V VG E + C P + WK G LD M+
Sbjct: 119 ---SDVMVAVG----EPAVMECQPPRGHPEPTISWK--KDGSPLDDKDERITIRGGKLMI 169
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL 153
YT + D G C N +G + + VL
Sbjct: 170 TYT--RKSDAGKYVCVGTNMVGERESEVAELTVL 201
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
GG P ++ AR+ L N SL L V Q G ++C A+N G+ T + ++RV P
Sbjct: 418 GGGPW--DSVARV-LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKP 474
Query: 60 -ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN 97
I S + G C E PA + W +
Sbjct: 475 EIVDSASELTAGVPNKVGT---CVSEGSYPAGTLSWHLD 510
>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
Length = 125
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
++I+ N SL L+ V AGTYKC I +KG+ +N
Sbjct: 78 QVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNAN 113
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGA 71
+L N SL L V Q G ++C A+N G+ T + ++RV P I S + G
Sbjct: 60 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGV 119
Query: 72 SRSESVDIHCAVEADPPARSFKWKFN 97
C E PA + W +
Sbjct: 120 PNKVGT---CVSEGSYPAGTLSWHLD 142
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGA 71
+L N SL L V Q G ++C A+N G+ T + ++RV P I S + G
Sbjct: 57 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGV 116
Query: 72 SRSESVDIHCAVEADPPARSFKWKFN 97
C E PA + W +
Sbjct: 117 PNKVGT---CVSEGSYPAGTLSWHLD 139
>pdb|2E5E|A Chain A, Solution Structure Of Variable-Type Domain Of Human
Receptor For Advanced Glycation Endproducts
Length = 101
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+L N SL L V Q G ++C A+N G+ T + ++RV P
Sbjct: 58 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP 101
>pdb|2L7U|A Chain A, Structure Of Cel-Pep-Rage V Domain Complex
Length = 105
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+L N SL L V Q G ++C A+N G+ T + ++RV P
Sbjct: 58 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP 101
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVT 125
++ S E V + C A PPA +++WK N G + + ++ P
Sbjct: 13 VLFPEESTEEQVLLACRARASPPA-TYRWKMN--GTEMKLEPGSRHQLVGGNLVIMNPTK 69
Query: 126 ELDYGTLSCAAQNAIGTQVT 145
D G C A N +GT V+
Sbjct: 70 AQDAGVYQCLASNPVGTVVS 89
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 22 LVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC 81
+++ Q AG Y+C A N G S + LR + + V A V + C
Sbjct: 63 VIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPC 122
Query: 82 AVEADPPARSFKWKFNN 98
A P S++W N
Sbjct: 123 NPPAHYPGLSYRWLLNE 139
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSE---SV 77
+L + VS + GTY+C A N+KG T Q ++ V+ P + + ++ + ++ ++
Sbjct: 257 TLQIPSVSFEDEGTYECEAENSKGRDTV-QGRIIVQAQP----EWLKVISDTEADIGSNL 311
Query: 78 DIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQ 137
CA A P + +W N GE L LR++ ++ D G C A+
Sbjct: 312 RWGCAA-AGKPRPTVRWLRN--GEPL---ASQNRVEVLAGDLRFSKLSLEDSGMYQCVAE 365
Query: 138 NAIGT 142
N GT
Sbjct: 366 NKHGT 370
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 8/139 (5%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR-VKYAPICKSDRIVIVGAS 72
R+ + + V+R+ GTY C ++ +G + ++K++ + P K + A+
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTC-MVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Query: 73 RSESVDIHCAVEADPPARSFKWKFN------NSGETLDVXXXXXXXXXXXXMLRYTPVTE 126
+ C+ + P + W + N T L + P++
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 127 LDYGTLSCAAQNAIGTQVT 145
D G SC A+N GT +T
Sbjct: 181 SDTGEYSCEARNGYGTPMT 199
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 8 AHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
A ++RI +L + SL + V ++ AG Y+C A N+ G A S +KL V+
Sbjct: 140 ALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI-----V 69
++L + +L + ++ +G Y+CSA N T N+ ++R+ P + V
Sbjct: 172 VVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231
Query: 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDY 129
A + + C V PP SF W GE + L + VT+ D
Sbjct: 232 IAIEGKDAVLECCVSGYPPP-SFTWL---RGEEVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 130 GTLSC 134
GT +C
Sbjct: 288 GTYTC 292
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSA-INTKGEATSNQLKLRVKYAPICKSDR-IVIVGAS 72
I+LSN L ++ + + GTY+C I +GE +++ V P ++ + IV A+
Sbjct: 150 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209
Query: 73 RSESVDIHCAVEADPPARSFKW-KFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGT 131
+SV + C + P + W K E + L V + D
Sbjct: 210 LGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAE 268
Query: 132 LSCAAQNAIGTQ 143
C A+N G Q
Sbjct: 269 YVCIAENKAGEQ 280
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 18/175 (10%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRV--KYAPICKSDRI 66
N ++ + +L + KV++ AG Y C A N G ++ S QL ++ ++ + RI
Sbjct: 51 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRI 110
Query: 67 VIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTE 126
V + E C + P + W + + E + +L ++
Sbjct: 111 V----KQDEHTRYECKIGGSPEIKVL-W-YKDETEIQESSKFRMSFVESVAVLEMYNLSV 164
Query: 127 LDYGTLSCAAQNAIGTQVTPCLYQV----VLAGKPQPPQNCSVRNETTSSVHISC 177
D G +C A NA G+ + +V V KP P V + VH+ C
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP-----VETLKGADVHLEC 214
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain
Of Nectin-1
Length = 95
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 53 LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXX 112
L V+Y P + + V + C +A+PPA + W TL+
Sbjct: 1 LNVQYEPEVTIEGFDGNWYLQRTDVKLTCKADANPPATEYHWT------TLNGSLPKGVE 54
Query: 113 XXXXXMLRYTPVTELDYGTLSCAAQNAIGTQ 143
+ P+T GT C A N IGT+
Sbjct: 55 AQNRTLFFRGPITYSLAGTYICEATNPIGTR 85
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 9 HNTSARIILSNQSLVLQKVSRQS-----------AGTYKCSAINTKGEATSNQLKLRVKY 57
+N I+S Q +V+QK +S AG Y+C A + KG+ + L + Y
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-Y 96
Query: 58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS 99
+ + + + E ++ C V + PA + W ++N
Sbjct: 97 QKLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNE 137
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 27/146 (18%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK-YAPICKSDRIVIVGAS 72
R+ S+ + V+R+ G Y C ++ +G ++ + + P K V +
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTC-MVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVT 117
Query: 73 RSESVDIHCAVEADPPARSFKW----------------KFNNSGETLDVXXXXXXXXXXX 116
+ C+ P + W F NS T+D
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGD------- 170
Query: 117 XMLRYTPVTELDYGTLSCAAQNAIGT 142
L + PVT D G C AQN GT
Sbjct: 171 --LIFDPVTAFDSGEYYCQAQNGYGT 194
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 9 HNTSARIILSNQSLVLQKVSRQS-----------AGTYKCSAINTKGEATSNQLKLRVKY 57
+N I+S Q +V+QK +S AG Y+C A + KG+ + L + Y
Sbjct: 36 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-Y 94
Query: 58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS 99
+ + + + E ++ C V + PA + W ++N
Sbjct: 95 QKLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNE 135
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 18/175 (10%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRV--KYAPICKSDRI 66
N ++ + +L + KV++ AG Y C A N G ++ S QL ++ ++ + RI
Sbjct: 51 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 110
Query: 67 VIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTE 126
V + E C + P + W + + E + +L ++
Sbjct: 111 V----KQDEHTRYECKIGGSPEIKVL-W-YKDETEIQESSKFRMSFVESVAVLEMYNLSV 164
Query: 127 LDYGTLSCAAQNAIGTQVTPCLYQV----VLAGKPQPPQNCSVRNETTSSVHISC 177
D G +C A NA G+ + +V V KP P V + VH+ C
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP-----VETLKGADVHLEC 214
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 33 GTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSF 92
G Y+C A N G A SN+++L+V +P+ + + V + + C P+
Sbjct: 90 GEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVI 149
Query: 93 KW 94
W
Sbjct: 150 FW 151
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVD 78
N++L + VS + +G Y C A N G + + + +RVK AP + ++ A E
Sbjct: 274 NKALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKNLILAP-GEDGR 331
Query: 79 IHCAVEADPPARSFKWKFNNSGETL 103
+ C +P + +W N GE L
Sbjct: 332 LVCRANGNPKP-TVQWMVN--GEPL 353
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 10 NTSARIILSNQS----LVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR 65
N RI N++ L+ + + G Y C N G+ + LKL V AP +
Sbjct: 256 NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKP 315
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFN 97
++ + + V I C V PA + W N
Sbjct: 316 EKVIVVKQGQDVTIPCKVTG-LPAPNVVWSHN 346
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI 79
SLV+ KV G Y C A N+ G A+S L ++ + P + ++ V + V
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 80 HCAVEADPPARSFKWKFNNSGETL-DVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQN 138
C + P + +K GE L D L+ + G +C+A N
Sbjct: 122 ECRINGSEPLQVSWYK---DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 139 AIGT 142
+GT
Sbjct: 179 PLGT 182
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 18/175 (10%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRV--KYAPICKSDRI 66
N ++ + +L + KV++ AG Y C A N G ++ S QL ++ ++ + RI
Sbjct: 243 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 302
Query: 67 VIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTE 126
V + E C + P + W + + E + +L ++
Sbjct: 303 V----KQDEHTRYECKIGGSPEIKVL-W-YKDETEIQESSKFRMSFVESVAVLEMYNLSV 356
Query: 127 LDYGTLSCAAQNAIGTQVTPCLYQV----VLAGKPQPPQNCSVRNETTSSVHISC 177
D G +C A NA G+ + +V V KP P V + VH+ C
Sbjct: 357 EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP-----VETLKGADVHLEC 406
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 8/153 (5%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPICKSDRIVI 68
N I + +L + + + G Y CSA N G A+S+ +L L P + V
Sbjct: 147 NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVS 206
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELD 128
V + ES C V P + W +N E L VT+ D
Sbjct: 207 VDLALGESGTFKCHVTGTAPIK-ITWAKDNR-EIRPGGNYKMTLVENTATLTVLKVTKGD 264
Query: 129 YGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
G +C A N G C Q+ G +PP+
Sbjct: 265 AGQYTCYASNVAGKD--SCSAQL---GVQEPPR 292
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 28 SRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADP 87
SR++ +N + L L V+Y P + + V + C +A+P
Sbjct: 186 SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP 245
Query: 88 PARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNAIGTQ 143
PA + W TL+ + P+ GT C A N IGT+
Sbjct: 246 PATEYHWT------TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR 295
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASXXXXXXXXXXXXXPAFTL 215
P PP + + ++ SV +S TPG D P T F +E A T
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLP 241
L L V + VN+ G+SLP
Sbjct: 77 AQLNLSPYVNYSFRVMAVNSIGKSLP 102
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 28 SRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADP 87
SR++ +N + L L V+Y P + + V + C +A+P
Sbjct: 186 SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP 245
Query: 88 PARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNAIGTQ 143
PA + W TL+ + P+ GT C A N IGT+
Sbjct: 246 PATEYHWT------TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR 295
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 28 SRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADP 87
SR++ +N + L L V+Y P + + V + C +A+P
Sbjct: 187 SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP 246
Query: 88 PARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNAIGTQ 143
PA + W TL+ + P+ GT C A N IGT+
Sbjct: 247 PATEYHWT------TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR 296
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 28 SRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADP 87
SR++ +N + L L V+Y P + + V + C +A+P
Sbjct: 201 SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP 260
Query: 88 PARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNAIGTQ 143
PA + W TL+ + P+ GT C A N IGT+
Sbjct: 261 PATEYHWT------TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR 310
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIV 69
T+ RI L + +L+++++ S G + S + + A +N+L L+ +PI K D I+++
Sbjct: 207 TNERIQLETKD-ILKRIAQASNGNLRVSLLMLESMALNNELALK-SSSPIIKPDWIIVI 263
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 12 SARIILSNQSLVLQKV-----SRQSAGTYKCSAINTKGEATSNQLKLRV 55
S R++L + SL ++ SR G Y C A N GEA S+ L V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 12 SARIILS--NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ R+ LS N L + + R+ AG Y+C N SN +KL + + P
Sbjct: 153 TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 12 SARIILS--NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ R+ LS N L + + R+ AG Y+C N SN +KL + + P
Sbjct: 153 TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|1T6W|A Chain A, Rational Design Of A Calcium-Binding Adhesion Protein
Nmr, 20 Structures
Length = 99
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ-LKLRV 55
IL+N L ++ ++R +GTY + +T G N+ L LR+
Sbjct: 57 ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 97
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 14 RIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEAT 47
++I+S + SL+ + V AG Y C A N GEAT
Sbjct: 53 KMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEAT 89
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 153 LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSAS 197
L+ P PP V + T +SV +S PG G LP + + +E +S S
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQS 57
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 119 LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
L TP +E D+G +C A N IG + + +V A P P V ++++
Sbjct: 78 LEVTPDSENDFGNYNCTAVNRIGQESLEFI--LVQADTPSSPSIDQVEPYSSTAQVQFDE 135
Query: 179 PGYDGGLP 186
P GG+P
Sbjct: 136 PEATGGVP 143
>pdb|1HNG|A Chain A, Crystal Structure At 2.8 Angstroms Resolution Of A
Soluble Form Of The Cell Adhesion Molecule Cd2
pdb|1HNG|B Chain B, Crystal Structure At 2.8 Angstroms Resolution Of A
Soluble Form Of The Cell Adhesion Molecule Cd2
Length = 176
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ-LKLRV 55
IL+N L ++ ++R +GTY + +T G N+ L LR+
Sbjct: 57 ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 97
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA----PICKSDRIVIVGASRSE 75
+ +++K + TY C + E+TS + L+V P K + +V R E
Sbjct: 144 RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI-RGE 202
Query: 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDY---GTL 132
+ I C+ A F L++ +R + +D+ G
Sbjct: 203 AAQIVCS--ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260
Query: 133 SCAAQNAIGTQVTPCLYQVV 152
SC A N +GT+ +QVV
Sbjct: 261 SCVASNDVGTRTATMNFQVV 280
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA----PICKSDRIVIVGASRSE 75
+ +++K + TY C + E+TS + L+V P K + +V R E
Sbjct: 144 RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI-RGE 202
Query: 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDY---GTL 132
+ I C+ A F L++ +R + +D+ G
Sbjct: 203 AAQIVCS--ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260
Query: 133 SCAAQNAIGTQVTPCLYQVV 152
SC A N +GT+ +QVV
Sbjct: 261 SCVASNDVGTRTATMNFQVV 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,666,624
Number of Sequences: 62578
Number of extensions: 226981
Number of successful extensions: 517
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 91
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)