Query psy11549
Match_columns 261
No_of_seqs 154 out of 1938
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 21:21:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 6.8E-33 1.5E-37 230.4 23.9 245 2-255 462-717 (1051)
2 KOG3513|consensus 100.0 3.1E-28 6.7E-33 202.9 26.9 229 11-249 285-515 (1051)
3 KOG4221|consensus 99.9 1.7E-26 3.7E-31 192.6 16.5 242 1-251 272-521 (1381)
4 KOG4194|consensus 99.9 2.2E-24 4.9E-29 169.1 18.5 210 20-239 574-787 (873)
5 KOG4221|consensus 99.9 1.1E-23 2.5E-28 176.0 19.6 237 1-250 175-418 (1381)
6 PHA02785 IL-beta-binding prote 99.9 1.2E-21 2.6E-26 151.2 23.6 207 20-239 82-318 (326)
7 KOG4222|consensus 99.9 5E-22 1.1E-26 165.4 16.1 233 1-248 167-411 (1281)
8 KOG4222|consensus 99.8 6E-20 1.3E-24 153.2 16.7 240 1-252 66-317 (1281)
9 PHA02826 IL-1 receptor-like pr 99.8 2.3E-17 4.9E-22 120.0 14.5 111 18-140 96-211 (227)
10 KOG4194|consensus 99.7 5.7E-16 1.2E-20 122.6 16.8 138 3-145 649-789 (873)
11 PHA02785 IL-beta-binding prote 99.7 1.4E-15 3.1E-20 117.6 16.6 131 12-144 169-319 (326)
12 cd05762 Ig8_MLCK Eighth immuno 99.7 1.2E-15 2.7E-20 96.7 11.6 87 69-160 10-97 (98)
13 cd05771 IgC_Tapasin_R Tapasin- 99.6 1.4E-14 3.1E-19 98.4 12.8 118 21-140 2-131 (139)
14 PHA02826 IL-1 receptor-like pr 99.6 1E-13 2.2E-18 101.1 16.6 158 69-236 32-211 (227)
15 cd05735 Ig8_DSCAM Eight immuno 99.6 6.3E-14 1.4E-18 87.1 10.5 82 74-160 1-88 (88)
16 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.6E-13 3.4E-18 84.8 11.3 77 69-148 5-83 (86)
17 cd05851 Ig3_Contactin-1 Third 99.5 2.1E-13 4.5E-18 84.8 11.4 86 59-151 2-87 (88)
18 cd04975 Ig4_SCFR_like Fourth i 99.5 1.7E-13 3.8E-18 86.9 11.2 82 68-152 12-100 (101)
19 cd05730 Ig3_NCAM-1_like Third 99.5 4.8E-13 1E-17 84.8 11.8 81 69-152 13-93 (95)
20 cd05737 Ig_Myomesin_like_C C-t 99.5 5.1E-13 1.1E-17 84.0 10.8 75 69-146 11-87 (92)
21 cd05745 Ig3_Peroxidasin Third 99.5 2.5E-13 5.4E-18 81.7 8.9 73 73-150 1-73 (74)
22 PF07679 I-set: Immunoglobulin 99.5 1E-12 2.2E-17 82.5 11.9 88 60-150 2-89 (90)
23 cd05867 Ig4_L1-CAM_like Fourth 99.5 7.2E-13 1.6E-17 80.1 10.6 75 74-151 1-75 (76)
24 cd05747 Ig5_Titin_like M5, fif 99.5 8.9E-13 1.9E-17 82.9 11.1 85 58-146 3-88 (92)
25 cd05892 Ig_Myotilin_C C-termin 99.5 3.9E-13 8.4E-18 80.5 8.9 71 77-150 1-74 (75)
26 cd05760 Ig2_PTK7 Second immuno 99.5 5.9E-13 1.3E-17 80.6 9.6 75 77-154 1-75 (77)
27 cd05773 Ig8_hNephrin_like Eigh 99.5 9.8E-13 2.1E-17 85.1 11.1 97 56-157 2-108 (109)
28 cd05863 Ig2_VEGFR-3 Second imm 99.5 4.5E-13 9.7E-18 78.0 8.4 66 77-152 1-66 (67)
29 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.1E-12 2.4E-17 83.4 10.8 80 69-149 11-96 (98)
30 cd05857 Ig2_FGFR Second immuno 99.5 1E-12 2.3E-17 81.4 10.2 80 69-149 4-83 (85)
31 cd05859 Ig4_PDGFR-alpha Fourth 99.5 1.5E-12 3.2E-17 82.8 11.0 81 69-152 13-100 (101)
32 cd05893 Ig_Palladin_C C-termin 99.5 6.5E-13 1.4E-17 79.7 8.6 71 77-150 1-74 (75)
33 cd05854 Ig6_Contactin-2 Sixth 99.5 1.6E-12 3.4E-17 80.2 10.6 78 75-152 1-82 (85)
34 cd05868 Ig4_NrCAM Fourth immun 99.5 1.4E-12 3.1E-17 78.7 10.2 75 74-151 1-75 (76)
35 cd05853 Ig6_Contactin-4 Sixth 99.5 9.5E-13 2.1E-17 80.3 9.2 78 75-152 1-82 (85)
36 cd05852 Ig5_Contactin-1 Fifth 99.5 1.1E-12 2.3E-17 78.3 9.1 72 74-150 1-72 (73)
37 cd05763 Ig_1 Subgroup of the i 99.5 1.4E-12 3.1E-17 78.7 9.5 74 77-151 1-74 (75)
38 cd04968 Ig3_Contactin_like Thi 99.4 6.1E-12 1.3E-16 78.4 11.9 77 69-151 11-87 (88)
39 cd05743 Ig_Perlecan_D2_like Im 99.4 3E-12 6.5E-17 77.8 10.0 74 74-151 1-76 (78)
40 cd05869 Ig5_NCAM-1 Fifth immun 99.4 5.2E-12 1.1E-16 80.2 11.5 80 69-149 12-95 (97)
41 cd04972 Ig_TrkABC_d4 Fourth do 99.4 5.1E-12 1.1E-16 79.1 11.3 78 69-149 10-88 (90)
42 cd05740 Ig_CEACAM_D4 Fourth im 99.4 4.2E-12 9.2E-17 79.2 10.6 71 69-145 13-83 (91)
43 cd05865 Ig1_NCAM-1 First immun 99.4 6.1E-12 1.3E-16 79.2 11.2 80 69-149 10-93 (96)
44 cd04978 Ig4_L1-NrCAM_like Four 99.4 3.1E-12 6.7E-17 77.5 9.5 74 74-150 1-74 (76)
45 cd05866 Ig1_NCAM-2 First immun 99.4 9.5E-12 2.1E-16 77.6 11.2 73 69-145 10-84 (92)
46 cd05744 Ig_Myotilin_C_like Imm 99.4 4.6E-12 1E-16 76.2 9.5 70 77-149 1-73 (75)
47 cd05891 Ig_M-protein_C C-termi 99.4 5.9E-12 1.3E-16 79.0 10.3 75 69-146 11-87 (92)
48 cd04976 Ig2_VEGFR Second immun 99.4 4.4E-12 9.6E-17 75.4 9.1 70 77-152 1-70 (71)
49 cd05864 Ig2_VEGFR-2 Second imm 99.4 5.4E-12 1.2E-16 74.4 9.1 70 77-153 1-70 (70)
50 cd05748 Ig_Titin_like Immunogl 99.4 7.7E-12 1.7E-16 75.3 9.9 71 76-148 1-71 (74)
51 cd04969 Ig5_Contactin_like Fif 99.4 6.7E-12 1.5E-16 75.2 9.5 71 74-149 1-71 (73)
52 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.1E-11 2.3E-16 78.8 10.9 80 69-149 11-94 (96)
53 cd05728 Ig4_Contactin-2-like F 99.4 8.9E-12 1.9E-16 77.0 10.1 75 69-149 9-83 (85)
54 cd05723 Ig4_Neogenin Fourth im 99.4 1.1E-11 2.5E-16 73.7 10.0 70 76-150 1-70 (71)
55 cd04970 Ig6_Contactin_like Six 99.4 9.5E-12 2.1E-16 77.0 9.9 81 75-157 1-85 (85)
56 cd05726 Ig4_Robo Fhird immunog 99.4 2.6E-11 5.7E-16 75.8 10.8 77 74-152 1-82 (90)
57 cd05876 Ig3_L1-CAM Third immun 99.3 1.5E-11 3.4E-16 73.1 9.1 68 77-149 1-68 (71)
58 cd07702 Ig2_VEGFR-1 Second imm 99.3 1.7E-11 3.7E-16 72.4 9.0 70 77-151 1-70 (72)
59 cd07693 Ig1_Robo First immunog 99.3 2.9E-11 6.2E-16 77.5 10.9 84 59-144 2-91 (100)
60 cd05853 Ig6_Contactin-4 Sixth 99.3 2.1E-12 4.6E-17 78.8 5.1 58 1-59 22-85 (85)
61 cd05731 Ig3_L1-CAM_like Third 99.3 1.7E-11 3.8E-16 73.1 8.7 68 77-149 1-68 (71)
62 cd05856 Ig2_FGFRL1-like Second 99.3 3E-11 6.5E-16 74.3 9.9 73 69-145 4-76 (82)
63 cd04974 Ig3_FGFR Third immunog 99.3 1.2E-11 2.6E-16 77.3 8.0 77 74-151 1-89 (90)
64 cd05725 Ig3_Robo Third immunog 99.3 2.1E-11 4.6E-16 72.2 8.4 67 77-149 1-67 (69)
65 cd05724 Ig2_Robo Second immuno 99.3 4.5E-11 9.8E-16 74.2 10.2 73 69-145 6-79 (86)
66 cd05736 Ig2_Follistatin_like S 99.3 3.2E-11 6.9E-16 72.9 9.1 73 77-151 1-73 (76)
67 cd05746 Ig4_Peroxidasin Fourth 99.3 2.4E-11 5.3E-16 71.9 8.3 67 77-148 1-67 (69)
68 cd05858 Ig3_FGFR-2 Third immun 99.3 3.4E-11 7.5E-16 75.3 9.2 77 74-151 1-89 (90)
69 cd05758 Ig5_KIRREL3-like Fifth 99.3 6.9E-11 1.5E-15 75.2 10.6 86 58-146 2-94 (98)
70 cd05764 Ig_2 Subgroup of the i 99.3 4.3E-11 9.4E-16 72.0 9.0 72 74-149 1-72 (74)
71 cd05848 Ig1_Contactin-5 First 99.3 1.1E-10 2.5E-15 73.4 11.1 69 73-145 18-87 (94)
72 cd05756 Ig1_IL1R_like First im 99.3 4.5E-11 9.8E-16 75.0 9.2 78 69-149 9-92 (94)
73 cd05849 Ig1_Contactin-1 First 99.3 8.8E-11 1.9E-15 73.6 10.3 67 74-145 19-86 (93)
74 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 9.4E-11 2E-15 69.1 9.6 67 74-148 1-67 (69)
75 cd05850 Ig1_Contactin-2 First 99.3 2.1E-10 4.5E-15 72.3 11.5 69 73-145 18-87 (94)
76 cd04973 Ig1_FGFR First immunog 99.3 1.2E-10 2.6E-15 70.8 10.1 70 69-145 4-73 (79)
77 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 9.3E-11 2E-15 70.4 9.4 65 77-144 1-65 (74)
78 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 8.6E-11 1.9E-15 71.5 9.0 67 78-147 2-76 (81)
79 cd05855 Ig_TrkB_d5 Fifth domai 99.3 8.9E-11 1.9E-15 70.6 8.9 66 78-146 2-73 (79)
80 cd05898 Ig5_KIRREL3 Fifth immu 99.2 3.3E-10 7.1E-15 71.1 11.2 77 69-146 11-94 (98)
81 cd05742 Ig1_VEGFR_like First i 99.2 1.1E-10 2.4E-15 72.0 9.1 76 74-150 1-82 (84)
82 cd05765 Ig_3 Subgroup of the i 99.2 9.1E-11 2E-15 72.0 8.6 73 74-148 1-78 (81)
83 cd04977 Ig1_NCAM-1_like First 99.2 2.3E-10 5.1E-15 71.7 10.5 71 69-142 10-82 (92)
84 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.5E-10 3.3E-15 71.1 9.4 79 74-153 1-82 (84)
85 cd05892 Ig_Myotilin_C C-termin 99.2 4.1E-11 8.8E-16 71.7 6.3 54 1-55 18-75 (75)
86 cd05750 Ig_Pro_neuregulin Immu 99.2 1.3E-10 2.9E-15 70.1 8.6 69 77-146 1-72 (75)
87 cd05752 Ig1_FcgammaR_like Frst 99.2 6.7E-11 1.5E-15 71.4 6.9 59 69-139 10-68 (78)
88 cd05722 Ig1_Neogenin First imm 99.2 3.7E-10 8.1E-15 71.4 10.6 74 69-145 9-88 (95)
89 cd05874 Ig6_NrCAM Sixth immuno 99.2 2.6E-10 5.6E-15 68.8 9.3 68 77-146 1-72 (77)
90 cd05733 Ig6_L1-CAM_like Sixth 99.2 1.5E-10 3.2E-15 70.1 8.2 67 77-145 1-71 (77)
91 cd05729 Ig2_FGFR_like Second i 99.2 5E-10 1.1E-14 69.3 10.4 77 69-146 4-80 (85)
92 cd05875 Ig6_hNeurofascin_like 99.2 3.6E-10 7.8E-15 68.2 9.2 68 77-146 1-72 (77)
93 cd05895 Ig_Pro_neuregulin-1 Im 99.2 3.3E-10 7.2E-15 68.4 8.9 70 77-146 1-73 (76)
94 cd05893 Ig_Palladin_C C-termin 99.2 9.3E-11 2E-15 70.3 6.0 54 1-55 18-75 (75)
95 cd05852 Ig5_Contactin-1 Fifth 99.2 9.9E-11 2.2E-15 69.8 6.0 53 1-55 21-73 (73)
96 cd05749 Ig2_Tyro3_like Second 99.2 7E-10 1.5E-14 67.4 9.5 68 69-145 8-75 (81)
97 cd05854 Ig6_Contactin-2 Sixth 99.2 9.6E-11 2.1E-15 72.2 5.7 58 1-59 22-85 (85)
98 cd04970 Ig6_Contactin_like Six 99.2 6.4E-11 1.4E-15 73.3 4.8 58 1-59 22-85 (85)
99 cd05734 Ig7_DSCAM Seventh immu 99.1 4.9E-10 1.1E-14 68.2 8.6 67 77-145 1-72 (79)
100 cd05873 Ig_Sema4D_like Immunog 99.1 1.4E-09 3E-14 66.7 9.8 65 69-139 6-70 (87)
101 cd05882 Ig1_Necl-1 First (N-te 99.1 1.3E-09 2.9E-14 68.4 9.8 69 69-138 7-83 (95)
102 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 2.2E-10 4.7E-15 68.8 5.9 56 1-56 18-74 (74)
103 cd05735 Ig8_DSCAM Eight immuno 99.1 3.7E-10 7.9E-15 70.1 7.0 59 1-60 21-86 (88)
104 cd05754 Ig3_Perlecan_like Thir 99.1 1.5E-09 3.3E-14 67.0 9.7 72 69-148 11-83 (85)
105 cd05744 Ig_Myotilin_C_like Imm 99.1 3.8E-10 8.2E-15 67.8 6.7 54 1-55 18-75 (75)
106 cd04979 Ig_Semaphorin_C Immuno 99.1 1.5E-09 3.3E-14 67.7 9.6 80 69-153 6-86 (89)
107 cd05762 Ig8_MLCK Eighth immuno 99.1 3.5E-10 7.6E-15 71.7 6.8 58 1-60 35-95 (98)
108 cd04967 Ig1_Contactin First Ig 99.1 2.7E-09 6E-14 66.8 10.7 69 73-145 18-87 (91)
109 cd04975 Ig4_SCFR_like Fourth i 99.1 3.1E-10 6.7E-15 72.1 6.1 54 1-56 39-100 (101)
110 cd04976 Ig2_VEGFR Second immun 99.1 3.3E-10 7.1E-15 67.3 5.7 52 1-55 18-69 (71)
111 cd05757 Ig2_IL1R_like Second i 99.1 1.4E-09 3E-14 67.9 8.4 76 69-150 5-85 (92)
112 cd05745 Ig3_Peroxidasin Third 99.1 3.3E-10 7.1E-15 68.0 5.5 53 1-55 22-74 (74)
113 cd05867 Ig4_L1-CAM_like Fourth 99.1 6.8E-10 1.5E-14 67.0 6.8 54 1-55 21-75 (76)
114 cd05724 Ig2_Robo Second immuno 99.1 4.4E-10 9.6E-15 69.7 6.0 55 1-55 32-86 (86)
115 cd05753 Ig2_FcgammaR_like Seco 99.1 1.2E-09 2.5E-14 67.0 7.6 66 70-144 10-75 (83)
116 cd05863 Ig2_VEGFR-3 Second imm 99.1 3.3E-10 7.1E-15 66.0 4.7 48 1-55 18-65 (67)
117 cd05723 Ig4_Neogenin Fourth im 99.1 7.2E-10 1.6E-14 65.9 6.3 53 1-55 19-71 (71)
118 cd05740 Ig_CEACAM_D4 Fourth im 99.1 5.7E-10 1.2E-14 69.7 6.0 54 1-55 37-90 (91)
119 cd07701 Ig1_Necl-3 First (N-te 99.1 4.3E-09 9.2E-14 66.3 9.9 70 69-139 7-84 (95)
120 cd05727 Ig2_Contactin-2-like S 99.0 9.4E-10 2E-14 68.4 6.8 73 69-142 13-85 (96)
121 cd04971 Ig_TrKABC_d5 Fifth dom 99.0 9.4E-10 2E-14 67.0 6.7 52 1-53 18-78 (81)
122 PF00047 ig: Immunoglobulin do 99.0 2.1E-09 4.5E-14 62.6 7.9 62 74-136 1-64 (64)
123 cd07690 Ig1_CD4 First immunogl 99.0 2.9E-09 6.3E-14 66.4 8.5 74 69-143 2-91 (94)
124 cd05864 Ig2_VEGFR-2 Second imm 99.0 6.9E-10 1.5E-14 65.4 5.4 51 1-54 18-69 (70)
125 cd05862 Ig1_VEGFR First immuno 99.0 7.1E-09 1.5E-13 64.0 9.7 78 74-151 1-84 (86)
126 cd05865 Ig1_NCAM-1 First immun 99.0 1.6E-09 3.6E-14 68.2 6.9 53 3-55 39-95 (96)
127 cd04973 Ig1_FGFR First immunog 99.0 1.1E-09 2.4E-14 66.6 6.0 51 1-54 28-78 (79)
128 cd05855 Ig_TrkB_d5 Fifth domai 99.0 1.4E-09 2.9E-14 65.5 6.1 52 1-53 18-76 (79)
129 cd05859 Ig4_PDGFR-alpha Fourth 99.0 1.2E-09 2.5E-14 69.6 5.7 54 1-56 38-100 (101)
130 cd04969 Ig5_Contactin_like Fif 99.0 1.1E-09 2.5E-14 65.5 5.4 53 1-55 21-73 (73)
131 cd05748 Ig_Titin_like Immunogl 99.0 1.9E-09 4.1E-14 64.7 6.4 54 1-55 19-74 (74)
132 cd05871 Ig_Semaphorin_classIII 99.0 1.8E-08 4E-13 62.8 10.7 73 69-145 6-82 (91)
133 smart00408 IGc2 Immunoglobulin 99.0 4.3E-09 9.2E-14 60.9 7.4 63 73-141 1-63 (63)
134 cd05746 Ig4_Peroxidasin Fourth 99.0 1.4E-09 3.1E-14 64.2 5.4 51 1-53 18-68 (69)
135 cd05725 Ig3_Robo Third immunog 99.0 1.8E-09 4E-14 63.8 5.8 52 1-55 18-69 (69)
136 cd07702 Ig2_VEGFR-1 Second imm 99.0 1.5E-09 3.3E-14 64.1 5.3 52 1-53 18-70 (72)
137 cd05876 Ig3_L1-CAM Third immun 99.0 1.7E-09 3.7E-14 64.3 5.4 53 1-55 18-70 (71)
138 cd05894 Ig_C5_MyBP-C C5 immuno 99.0 2.3E-09 5.1E-14 66.2 6.2 54 1-55 30-86 (86)
139 cd04978 Ig4_L1-NrCAM_like Four 99.0 2.5E-09 5.4E-14 64.6 6.1 54 1-55 21-75 (76)
140 PF00041 fn3: Fibronectin type 99.0 1.3E-08 2.9E-13 62.8 9.5 82 159-242 2-85 (85)
141 cd05760 Ig2_PTK7 Second immuno 99.0 3.7E-09 8E-14 63.9 6.6 55 1-55 18-74 (77)
142 cd05868 Ig4_NrCAM Fourth immun 99.0 2.9E-09 6.2E-14 64.2 6.0 54 1-55 21-75 (76)
143 cd05850 Ig1_Contactin-2 First 98.9 4.9E-09 1.1E-13 66.0 7.2 54 1-54 39-93 (94)
144 cd05717 Ig1_Necl-1-3_like Firs 98.9 2.4E-08 5.3E-13 63.1 10.4 71 69-140 7-85 (95)
145 cd05737 Ig_Myomesin_like_C C-t 98.9 3.4E-09 7.3E-14 66.5 6.4 54 1-55 36-92 (92)
146 cd05848 Ig1_Contactin-5 First 98.9 3.7E-09 8E-14 66.5 6.4 53 1-53 39-92 (94)
147 cd05757 Ig2_IL1R_like Second i 98.9 4.8E-09 1E-13 65.4 6.8 44 1-46 35-78 (92)
148 cd05860 Ig4_SCFR Fourth immuno 98.9 1.1E-07 2.3E-12 59.4 11.7 82 68-152 12-98 (101)
149 cd05866 Ig1_NCAM-2 First immun 98.9 7.5E-09 1.6E-13 64.5 6.6 52 3-55 37-91 (92)
150 cd05845 Ig2_L1-CAM_like Second 98.9 1.5E-08 3.2E-13 63.0 7.6 71 68-142 12-84 (95)
151 cd05756 Ig1_IL1R_like First im 98.9 4.5E-09 9.7E-14 66.0 5.4 54 1-55 39-94 (94)
152 cd05728 Ig4_Contactin-2-like F 98.9 7.2E-09 1.6E-13 64.0 5.6 52 1-55 34-85 (85)
153 cd05731 Ig3_L1-CAM_like Third 98.9 5.7E-09 1.2E-13 62.1 5.0 53 1-55 18-70 (71)
154 cd05897 Ig2_IL1R2_like Second 98.9 1.2E-08 2.6E-13 63.6 6.5 55 1-55 35-93 (95)
155 cd05856 Ig2_FGFRL1-like Second 98.8 4.4E-09 9.6E-14 64.6 4.4 54 1-55 29-82 (82)
156 cd05849 Ig1_Contactin-1 First 98.8 1.6E-08 3.5E-13 63.3 6.8 53 1-54 39-92 (93)
157 cd04977 Ig1_NCAM-1_like First 98.8 1.1E-08 2.3E-13 64.2 6.0 52 3-55 37-92 (92)
158 cd05857 Ig2_FGFR Second immuno 98.8 8.9E-09 1.9E-13 63.7 5.6 54 1-55 29-85 (85)
159 cd05851 Ig3_Contactin-1 Third 98.8 3.9E-08 8.5E-13 61.0 8.4 74 168-247 14-87 (88)
160 cd05763 Ig_1 Subgroup of the i 98.8 1.2E-08 2.7E-13 61.3 5.8 37 18-55 38-74 (75)
161 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 5E-08 1.1E-12 61.1 8.5 75 69-145 10-98 (104)
162 cd05897 Ig2_IL1R2_like Second 98.8 4.5E-08 9.8E-13 61.0 8.1 72 69-143 5-81 (95)
163 cd05736 Ig2_Follistatin_like S 98.8 2.9E-08 6.3E-13 59.9 7.2 55 1-56 18-74 (76)
164 cd05764 Ig_2 Subgroup of the i 98.8 1.3E-08 2.9E-13 61.0 5.6 51 3-55 24-74 (74)
165 cd05773 Ig8_hNephrin_like Eigh 98.8 1.5E-08 3.3E-13 65.6 6.1 58 1-59 43-108 (109)
166 cd05722 Ig1_Neogenin First imm 98.8 1.6E-08 3.6E-13 63.8 5.9 55 1-55 34-95 (95)
167 cd05891 Ig_M-protein_C C-termi 98.8 2.1E-08 4.6E-13 62.8 6.2 53 1-54 36-91 (92)
168 smart00409 IG Immunoglobulin. 98.8 3.5E-07 7.7E-12 56.2 11.8 74 69-145 4-79 (86)
169 smart00410 IG_like Immunoglobu 98.8 3.5E-07 7.7E-12 56.2 11.8 74 69-145 4-79 (86)
170 cd05733 Ig6_L1-CAM_like Sixth 98.8 2.3E-08 5E-13 60.4 6.0 53 1-53 18-76 (77)
171 cd05874 Ig6_NrCAM Sixth immuno 98.8 2.5E-08 5.4E-13 60.1 6.1 53 1-53 18-76 (77)
172 PF13895 Ig_2: Immunoglobulin 98.8 1.2E-07 2.7E-12 57.7 9.3 70 70-152 10-79 (80)
173 cd05881 Ig1_Necl-2 First (N-te 98.8 3E-07 6.4E-12 57.4 10.6 69 69-138 7-83 (95)
174 cd05771 IgC_Tapasin_R Tapasin- 98.8 6.3E-07 1.4E-11 60.9 13.1 74 118-195 2-77 (139)
175 cd05875 Ig6_hNeurofascin_like 98.8 4E-08 8.7E-13 59.3 6.4 53 1-53 18-76 (77)
176 PF07679 I-set: Immunoglobulin 98.7 3.3E-08 7.1E-13 61.8 5.9 54 1-55 35-90 (90)
177 cd05734 Ig7_DSCAM Seventh immu 98.7 4.7E-08 1E-12 59.4 6.1 44 12-55 36-79 (79)
178 cd05895 Ig_Pro_neuregulin-1 Im 98.7 2.5E-08 5.4E-13 60.2 4.7 46 1-46 19-70 (76)
179 cd05751 Ig1_LILRB1_like First 98.7 1.1E-07 2.3E-12 59.5 7.7 65 69-139 11-75 (91)
180 cd05858 Ig3_FGFR-2 Third immun 98.7 4.8E-08 1E-12 61.0 6.0 35 20-55 55-89 (90)
181 cd05750 Ig_Pro_neuregulin Immu 98.7 3E-08 6.4E-13 59.7 4.9 46 1-46 19-69 (75)
182 cd05885 Ig2_Necl-4 Second immu 98.7 2E-07 4.4E-12 55.9 8.1 64 77-143 2-69 (80)
183 cd05726 Ig4_Robo Fhird immunog 98.7 1.8E-07 3.9E-12 58.4 8.1 78 170-252 1-86 (90)
184 KOG0196|consensus 98.7 1.4E-06 3.1E-11 72.6 15.2 135 116-252 397-537 (996)
185 cd05730 Ig3_NCAM-1_like Third 98.7 2.9E-07 6.2E-12 58.1 9.0 78 166-249 14-94 (95)
186 cd04967 Ig1_Contactin First Ig 98.7 4.7E-08 1E-12 61.2 5.3 50 1-50 39-89 (91)
187 cd05747 Ig5_Titin_like M5, fif 98.7 7.6E-08 1.6E-12 60.4 6.1 51 1-53 38-91 (92)
188 cd05870 Ig5_NCAM-2 Fifth immun 98.7 2.4E-07 5.2E-12 58.8 8.4 74 168-246 14-97 (98)
189 cd05879 Ig_P0 Immunoglobulin ( 98.7 5.8E-07 1.3E-11 58.5 10.3 83 69-151 8-114 (116)
190 cd07693 Ig1_Robo First immunog 98.7 6.8E-08 1.5E-12 61.7 5.9 55 1-55 36-99 (100)
191 PF13927 Ig_3: Immunoglobulin 98.7 6.5E-08 1.4E-12 58.1 5.3 58 77-138 18-75 (75)
192 cd04979 Ig_Semaphorin_C Immuno 98.7 8E-08 1.7E-12 59.9 5.7 56 1-56 30-87 (89)
193 cd05872 Ig_Sema4B_like Immunog 98.7 5.7E-07 1.2E-11 54.8 9.1 77 69-153 6-82 (85)
194 cd05877 Ig_LP_like Immunoglobu 98.6 8.5E-07 1.8E-11 57.2 10.6 74 73-146 1-97 (106)
195 cd05753 Ig2_FcgammaR_like Seco 98.6 2.4E-08 5.2E-13 61.2 3.1 49 1-55 35-83 (83)
196 cd04968 Ig3_Contactin_like Thi 98.6 2.9E-07 6.2E-12 57.2 8.0 74 168-247 14-87 (88)
197 cd05873 Ig_Sema4D_like Immunog 98.6 8.7E-08 1.9E-12 58.8 5.3 42 1-43 30-71 (87)
198 cd05759 Ig2_KIRREL3-like Secon 98.6 3.7E-07 8.1E-12 55.9 8.2 72 77-151 2-80 (82)
199 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 1E-07 2.2E-12 59.7 5.5 53 1-54 46-103 (104)
200 cd05775 Ig_SLAM-CD84_like_N N- 98.6 2.8E-07 6E-12 58.3 7.6 81 72-153 2-96 (97)
201 cd05741 Ig_CEACAM_D1_like Firs 98.6 4.3E-07 9.3E-12 57.0 8.4 68 74-143 1-83 (92)
202 cd05900 Ig_Aggrecan Immunoglob 98.6 8.2E-07 1.8E-11 57.4 9.5 79 73-153 1-108 (112)
203 KOG3515|consensus 98.6 4.2E-07 9.2E-12 75.9 9.9 157 70-235 18-185 (741)
204 cd04983 IgV_TCR_alpha_like Imm 98.6 5.4E-07 1.2E-11 58.5 8.6 71 69-140 8-93 (109)
205 cd05713 Ig_MOG_like Immunoglob 98.6 1.4E-06 3E-11 55.6 10.1 78 74-153 1-99 (100)
206 cd05714 Ig_CSPGs_LP Immunoglob 98.6 1.4E-06 3E-11 56.2 10.1 74 73-146 1-97 (106)
207 cd05878 Ig_Aggrecan_like Immun 98.6 2.1E-06 4.6E-11 55.6 10.5 73 73-145 1-100 (110)
208 PHA03376 BARF1; Provisional 98.5 7.5E-06 1.6E-10 56.4 13.1 122 69-199 21-165 (221)
209 cd04972 Ig_TrkABC_d4 Fourth do 98.5 6.4E-07 1.4E-11 55.9 7.0 81 159-246 6-89 (90)
210 cd05899 IgV_TCR_beta Immunoglo 98.5 1.3E-06 2.7E-11 56.8 8.4 70 69-140 8-95 (110)
211 cd05732 Ig5_NCAM-1_like Fifth 98.5 1.3E-06 2.8E-11 55.3 8.2 74 168-246 14-95 (96)
212 cd05718 Ig1_PVR_like First imm 98.5 3.1E-06 6.7E-11 53.7 10.0 71 75-145 1-91 (98)
213 cd05711 Ig_FcalphaRI Immunoglo 98.5 1.1E-06 2.3E-11 55.2 7.6 67 69-138 10-76 (94)
214 cd05739 Ig3_RPTP_IIa_LAR_like 98.5 6.8E-07 1.5E-11 52.6 6.1 67 170-244 1-67 (69)
215 cd00099 IgV Immunoglobulin var 98.5 2.3E-06 5.1E-11 55.0 9.3 72 70-141 2-91 (105)
216 cd04974 Ig3_FGFR Third immunog 98.5 1.3E-06 2.8E-11 54.5 7.5 73 170-247 1-89 (90)
217 cd05880 Ig_EVA1 Immunoglobulin 98.5 2.7E-06 5.9E-11 55.6 9.2 74 69-142 8-104 (115)
218 cd05743 Ig_Perlecan_D2_like Im 98.5 4.5E-07 9.8E-12 54.9 5.2 72 170-246 1-75 (78)
219 cd05754 Ig3_Perlecan_like Thir 98.5 1.6E-06 3.4E-11 53.5 7.6 78 159-245 7-84 (85)
220 cd05774 Ig_CEACAM_D1 First imm 98.5 7.1E-07 1.5E-11 57.0 6.1 44 11-54 61-104 (105)
221 cd04980 IgV_L_kappa Immunoglob 98.4 2.4E-06 5.3E-11 55.0 8.6 71 69-139 10-93 (106)
222 cd05869 Ig5_NCAM-1 Fifth immun 98.4 1.3E-06 2.8E-11 55.3 6.8 74 169-247 16-97 (97)
223 cd05765 Ig_3 Subgroup of the i 98.4 1.5E-06 3.3E-11 53.0 6.8 72 170-246 1-80 (81)
224 cd05758 Ig5_KIRREL3-like Fifth 98.4 9.6E-07 2.1E-11 56.1 5.8 52 1-53 37-97 (98)
225 cd05715 Ig_P0-like Immunoglobu 98.4 4.5E-06 9.7E-11 54.8 9.1 74 69-142 8-105 (116)
226 cd05846 Ig1_MRC-OX-2_like Firs 98.4 3.3E-06 7.1E-11 53.5 8.1 76 74-149 1-94 (97)
227 cd05902 Ig_Neurocan Immunoglob 98.4 8.3E-06 1.8E-10 52.5 9.9 78 74-153 2-106 (110)
228 cd04984 IgV_L_lambda Immunoglo 98.4 2.9E-06 6.3E-11 53.8 7.8 68 70-138 2-84 (98)
229 cd05887 Ig1_Nectin-3_like Firs 98.4 5.2E-06 1.1E-10 52.0 8.6 76 75-150 1-94 (96)
230 cd05871 Ig_Semaphorin_classIII 98.4 2.2E-06 4.7E-11 53.4 6.7 42 14-56 47-89 (91)
231 cd05861 Ig1_PDGFR-alphabeta Fr 98.4 1.5E-06 3.2E-11 53.4 5.7 38 19-56 45-83 (84)
232 cd04982 IgV_TCR_gamma Immunogl 98.4 6.3E-06 1.4E-10 54.1 9.1 69 69-138 8-98 (116)
233 cd05742 Ig1_VEGFR_like First i 98.3 1.8E-06 3.9E-11 53.1 5.9 76 170-247 1-83 (84)
234 cd05886 Ig1_Nectin-1_like Firs 98.3 3E-06 6.5E-11 53.5 6.8 37 18-55 61-98 (99)
235 KOG3515|consensus 98.3 1.1E-05 2.3E-10 67.9 11.7 222 21-248 362-590 (741)
236 cd05886 Ig1_Nectin-1_like Firs 98.3 9.6E-06 2.1E-10 51.2 8.8 71 76-146 2-93 (99)
237 cd05729 Ig2_FGFR_like Second i 98.3 3.3E-06 7.2E-11 52.0 6.0 54 1-55 29-85 (85)
238 cd05901 Ig_Versican Immunoglob 98.3 3.7E-05 8E-10 49.8 10.9 36 115-150 77-112 (117)
239 cd05741 Ig_CEACAM_D1_like Firs 98.3 2.8E-06 6.1E-11 53.2 5.7 44 12-55 49-92 (92)
240 cd05862 Ig1_VEGFR First immuno 98.3 5.2E-06 1.1E-10 51.2 6.7 77 170-248 1-85 (86)
241 cd05749 Ig2_Tyro3_like Second 98.3 5E-06 1.1E-10 50.5 6.4 69 159-239 4-73 (81)
242 cd05774 Ig_CEACAM_D1 First imm 98.3 1.8E-05 3.9E-10 50.5 9.2 70 70-141 9-94 (105)
243 cd05751 Ig1_LILRB1_like First 98.2 5.5E-06 1.2E-10 51.7 6.6 74 169-248 15-89 (91)
244 cd07706 IgV_TCR_delta Immunogl 98.2 1.6E-05 3.5E-10 52.2 9.0 71 69-139 9-94 (116)
245 cd05888 Ig1_Nectin-4_like Frst 98.2 7.6E-06 1.7E-10 52.0 7.1 36 19-55 63-99 (100)
246 PF07686 V-set: Immunoglobulin 98.2 2.7E-05 5.9E-10 50.7 9.9 70 69-139 11-101 (114)
247 cd07700 IgV_CD8_beta Immunoglo 98.2 1E-05 2.2E-10 52.2 7.6 69 70-138 2-93 (107)
248 cd05888 Ig1_Nectin-4_like Frst 98.2 2.1E-05 4.6E-10 50.0 8.7 70 76-145 2-93 (100)
249 cd05716 Ig_pIgR Immunoglobulin 98.2 9.4E-06 2E-10 51.5 7.1 72 69-140 2-87 (98)
250 smart00408 IGc2 Immunoglobulin 98.2 3.4E-06 7.3E-11 48.4 4.6 42 1-44 22-63 (63)
251 cd05883 Ig2_Necl-2 Second immu 98.2 1.4E-05 3.1E-10 48.2 7.3 63 77-141 2-68 (82)
252 cd05727 Ig2_Contactin-2-like S 98.2 1.7E-05 3.7E-10 49.5 7.9 67 168-239 16-86 (96)
253 cd05752 Ig1_FcgammaR_like Frst 98.2 1.3E-05 2.7E-10 48.4 6.8 62 160-235 7-68 (78)
254 cd05882 Ig1_Necl-1 First (N-te 98.2 6.5E-06 1.4E-10 51.7 5.6 34 20-55 62-95 (95)
255 cd05879 Ig_P0 Immunoglobulin ( 98.1 5.6E-06 1.2E-10 53.9 5.2 37 18-54 78-115 (116)
256 cd05898 Ig5_KIRREL3 Fifth immu 98.1 4.2E-05 9.1E-10 48.1 8.8 78 164-245 10-97 (98)
257 PHA03376 BARF1; Provisional 98.1 3.2E-05 6.9E-10 53.4 8.1 76 21-99 88-163 (221)
258 cd05775 Ig_SLAM-CD84_like_N N- 98.1 9.6E-06 2.1E-10 51.3 5.4 36 20-55 61-96 (97)
259 cd07694 Ig2_CD4 Second immunog 98.1 0.00011 2.3E-09 44.4 9.3 63 70-139 10-73 (88)
260 cd05901 Ig_Versican Immunoglob 98.1 1.3E-05 2.9E-10 51.8 5.7 38 18-56 77-114 (117)
261 cd05712 Ig_Siglec_N Immunoglob 98.1 7.7E-05 1.7E-09 49.1 9.6 71 69-139 9-102 (119)
262 cd05718 Ig1_PVR_like First imm 98.1 1.9E-05 4.1E-10 50.1 6.4 36 19-55 61-97 (98)
263 cd05755 Ig2_ICAM-1_like Second 98.1 2.9E-05 6.3E-10 48.8 7.0 68 71-142 13-87 (100)
264 cd05887 Ig1_Nectin-3_like Firs 98.1 1.6E-05 3.4E-10 49.8 5.8 38 18-55 58-95 (96)
265 cd00098 IgC Immunoglobulin Con 98.1 1.6E-05 3.5E-10 50.1 6.0 69 73-141 12-86 (95)
266 PHA02633 hypothetical protein; 98.0 2.1E-05 4.5E-10 43.6 5.3 40 18-58 16-55 (63)
267 PHA02987 Ig domain OX-2-like p 98.0 8.4E-05 1.8E-09 51.6 9.4 70 69-139 25-107 (189)
268 cd05872 Ig_Sema4B_like Immunog 98.0 1.6E-05 3.5E-10 48.4 5.2 40 1-42 30-69 (85)
269 cd05885 Ig2_Necl-4 Second immu 98.0 1.3E-05 2.8E-10 48.2 4.7 46 1-46 20-69 (80)
270 cd00063 FN3 Fibronectin type 3 98.0 0.00026 5.6E-09 43.7 11.1 83 158-244 2-88 (93)
271 cd05714 Ig_CSPGs_LP Immunoglob 98.0 1.2E-05 2.7E-10 51.7 5.0 37 19-56 67-103 (106)
272 cd05845 Ig2_L1-CAM_like Second 98.0 3.7E-05 8E-10 47.9 6.8 69 166-238 14-84 (95)
273 cd05720 Ig_CD8_alpha Immunoglo 98.0 5.4E-05 1.2E-09 48.5 7.7 67 71-138 3-90 (104)
274 smart00409 IG Immunoglobulin. 98.0 3.2E-05 6.9E-10 47.2 6.4 50 4-55 33-85 (86)
275 smart00410 IG_like Immunoglobu 98.0 3.2E-05 6.9E-10 47.2 6.4 50 4-55 33-85 (86)
276 cd05900 Ig_Aggrecan Immunoglob 98.0 1.8E-05 3.8E-10 51.2 5.2 38 18-56 72-109 (112)
277 cd05772 IgC_SIRP Signal-regula 98.0 6.4E-05 1.4E-09 48.6 7.7 67 71-140 18-92 (111)
278 cd07705 Ig2_Necl-1 Second immu 98.0 0.00013 2.7E-09 44.6 8.6 63 77-141 2-70 (83)
279 cd05713 Ig_MOG_like Immunoglob 98.0 1.6E-05 3.5E-10 50.6 4.7 35 20-55 65-99 (100)
280 PF13895 Ig_2: Immunoglobulin 98.0 9.5E-06 2.1E-10 49.2 3.3 35 21-55 46-80 (80)
281 cd05889 Ig1_DNAM-1_like First 97.9 0.00011 2.5E-09 46.0 8.1 71 75-145 1-89 (96)
282 cd05889 Ig1_DNAM-1_like First 97.9 5.5E-05 1.2E-09 47.4 6.5 27 18-44 58-84 (96)
283 cd07701 Ig1_Necl-3 First (N-te 97.9 0.0002 4.3E-09 45.0 9.2 67 165-236 7-85 (95)
284 cd05878 Ig_Aggrecan_like Immun 97.9 2.5E-05 5.5E-10 50.6 5.1 38 19-57 71-108 (110)
285 cd05877 Ig_LP_like Immunoglobu 97.9 2.4E-05 5.3E-10 50.4 5.0 36 20-56 68-103 (106)
286 cd05902 Ig_Neurocan Immunoglob 97.9 2.4E-05 5.3E-10 50.4 4.2 37 19-56 71-107 (110)
287 cd05761 Ig2_Necl-1-4_like Seco 97.9 0.00018 3.9E-09 43.9 7.8 64 77-142 2-70 (82)
288 cd05884 Ig2_Necl-3 Second immu 97.8 0.00012 2.6E-09 44.7 6.4 63 77-141 2-70 (83)
289 cd00096 Ig Immunoglobulin doma 97.7 0.00014 2.9E-09 42.4 6.0 63 77-140 1-66 (74)
290 cd05846 Ig1_MRC-OX-2_like Firs 97.7 7.8E-05 1.7E-09 47.1 5.0 38 18-55 59-96 (97)
291 PHA03269 envelope glycoprotein 97.7 0.01 2.2E-07 47.5 17.2 77 21-100 290-370 (566)
292 PF00047 ig: Immunoglobulin do 97.7 0.00014 2.9E-09 42.0 5.6 60 170-232 1-64 (64)
293 cd05759 Ig2_KIRREL3-like Secon 97.7 8.9E-05 1.9E-09 45.2 4.7 54 1-54 20-81 (82)
294 TIGR00864 PCC polycystin catio 97.7 0.024 5.1E-07 55.1 21.8 201 27-248 1834-2039(2740)
295 cd05881 Ig1_Necl-2 First (N-te 97.7 0.00014 3.1E-09 45.4 5.3 23 21-43 63-85 (95)
296 cd04981 IgV_H Immunoglobulin ( 97.7 0.00056 1.2E-08 44.8 8.4 70 69-138 7-97 (117)
297 smart00060 FN3 Fibronectin typ 97.6 0.0017 3.8E-08 38.7 9.8 76 160-238 4-82 (83)
298 cd05880 Ig_EVA1 Immunoglobulin 97.6 8.7E-05 1.9E-09 48.5 4.0 37 19-55 78-115 (115)
299 PF08205 C2-set_2: CD80-like C 97.6 0.00072 1.6E-08 41.9 8.0 68 74-141 14-85 (89)
300 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.00077 1.7E-08 42.2 8.1 67 74-140 14-83 (93)
301 smart00407 IGc1 Immunoglobulin 97.6 0.00067 1.4E-08 40.5 7.5 63 77-139 2-70 (75)
302 cd05715 Ig_P0-like Immunoglobu 97.6 0.00011 2.5E-09 48.1 4.2 35 20-54 80-115 (116)
303 smart00406 IGv Immunoglobulin 97.5 0.0006 1.3E-08 41.3 6.8 61 76-136 1-81 (81)
304 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.0005 1.1E-08 43.1 6.5 74 169-248 14-93 (94)
305 cd05717 Ig1_Necl-1-3_like Firs 97.5 0.0022 4.7E-08 40.3 9.1 66 166-236 8-85 (95)
306 cd05860 Ig4_SCFR Fourth immuno 97.5 0.00027 5.9E-09 44.3 4.5 36 20-56 65-100 (101)
307 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0012 2.7E-08 41.2 7.0 73 76-150 17-92 (95)
308 PF07686 V-set: Immunoglobulin 97.4 0.00038 8.3E-09 45.2 5.0 35 21-55 80-114 (114)
309 TIGR00864 PCC polycystin catio 97.4 0.084 1.8E-06 51.7 21.1 191 26-250 1663-1866(2740)
310 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.0022 4.7E-08 40.1 7.7 70 69-141 11-85 (97)
311 PF13927 Ig_3: Immunoglobulin 97.4 0.00018 3.8E-09 42.8 2.7 27 15-41 49-75 (75)
312 cd07690 Ig1_CD4 First immunogl 97.3 0.0011 2.5E-08 41.3 6.2 68 166-238 3-90 (94)
313 cd07699 IgC_L Immunoglobulin C 97.3 0.00057 1.2E-08 43.4 4.7 68 73-140 16-89 (100)
314 cd05766 IgC_MHC_II_beta Class 97.3 0.0036 7.8E-08 39.2 8.0 68 73-140 13-83 (94)
315 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00091 2E-08 38.0 4.6 53 71-139 4-56 (65)
316 cd05883 Ig2_Necl-2 Second immu 97.2 0.0013 2.8E-08 39.8 5.3 57 1-57 20-81 (82)
317 cd05719 Ig2_PVR_like Second im 97.2 0.0026 5.7E-08 39.8 6.9 75 74-151 15-93 (95)
318 cd07696 IgC_CH3 CH3 domain (th 97.1 0.0044 9.6E-08 38.9 7.2 29 71-99 11-41 (96)
319 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0058 1.3E-07 38.2 7.4 70 73-142 13-88 (94)
320 cd05770 IgC_beta2m Class I maj 97.1 0.008 1.7E-07 37.4 7.9 66 73-139 14-82 (93)
321 PHA03271 envelope glycoprotein 97.0 0.11 2.4E-06 41.0 16.0 163 21-195 208-384 (490)
322 PHA03270 envelope glycoprotein 97.0 0.13 2.8E-06 40.9 18.9 78 20-100 182-262 (466)
323 cd05899 IgV_TCR_beta Immunoglo 97.0 0.0086 1.9E-07 38.7 7.8 69 160-236 5-95 (110)
324 cd00099 IgV Immunoglobulin var 97.0 0.00074 1.6E-08 43.3 2.8 24 21-44 68-91 (105)
325 PF07654 C1-set: Immunoglobuli 97.0 0.0028 6.1E-08 38.6 5.2 65 73-140 7-77 (83)
326 cd04983 IgV_TCR_alpha_like Imm 97.0 0.012 2.6E-07 37.9 8.5 64 168-236 11-93 (109)
327 cd07697 IgC_TCR_gamma T cell r 96.9 0.0098 2.1E-07 37.3 7.2 27 73-99 15-42 (96)
328 cd05721 IgV_CTLA-4 Immunoglobu 96.9 0.013 2.8E-07 37.7 7.6 67 69-136 8-93 (115)
329 cd04984 IgV_L_lambda Immunoglo 96.9 0.0018 3.9E-08 40.9 3.8 22 21-42 64-85 (98)
330 KOG0196|consensus 96.8 0.015 3.3E-07 49.7 9.8 81 154-237 329-422 (996)
331 cd05767 IgC_MHC_II_alpha Class 96.8 0.0083 1.8E-07 37.5 6.5 64 73-139 14-83 (94)
332 PHA02633 hypothetical protein; 96.8 0.0066 1.4E-07 33.9 5.0 30 117-146 18-47 (63)
333 PHA02987 Ig domain OX-2-like p 96.7 0.0042 9E-08 43.4 4.9 41 18-58 83-124 (189)
334 cd05769 IgC_TCR_beta T cell re 96.7 0.0068 1.5E-07 39.4 5.4 72 73-144 17-96 (115)
335 PHA03273 envelope glycoprotein 96.6 0.28 6.1E-06 39.5 15.2 119 21-143 199-328 (486)
336 PF09067 EpoR_lig-bind: Erythr 96.6 0.034 7.4E-07 35.4 8.2 84 156-239 7-96 (104)
337 cd05768 IgC_CH4 CH4 domain (fo 96.6 0.0056 1.2E-07 39.0 4.5 27 73-99 15-42 (102)
338 cd04980 IgV_L_kappa Immunoglob 96.6 0.018 4E-07 36.9 7.1 63 168-234 13-92 (106)
339 PF08204 V-set_CD47: CD47 immu 96.5 0.006 1.3E-07 40.2 4.6 77 72-150 25-118 (130)
340 cd07700 IgV_CD8_beta Immunoglo 96.5 0.0028 6.2E-08 40.8 3.1 21 21-41 73-93 (107)
341 cd05716 Ig_pIgR Immunoglobulin 96.5 0.004 8.7E-08 39.3 3.4 23 21-43 65-87 (98)
342 cd07689 Ig2_VCAM-1 Second immu 96.4 0.032 7E-07 34.8 6.9 67 71-141 12-87 (99)
343 cd04986 IgC_CH2 CH2 domain (se 96.4 0.02 4.4E-07 36.0 6.1 27 73-99 18-46 (99)
344 PF07354 Sp38: Zona-pellucida- 96.4 0.0048 1E-07 45.3 3.7 38 3-41 21-58 (271)
345 PF11465 Receptor_2B4: Natural 96.3 0.016 3.4E-07 36.4 5.4 37 19-55 70-106 (108)
346 smart00406 IGv Immunoglobulin 96.3 0.0022 4.7E-08 38.7 1.4 19 20-38 62-80 (81)
347 cd04985 IgC_CH1 CH1 domain (fi 96.2 0.026 5.6E-07 35.4 6.1 27 73-99 15-42 (95)
348 PF01108 Tissue_fac: Tissue fa 96.2 0.094 2E-06 33.7 8.9 80 155-237 20-103 (107)
349 KOG1480|consensus 96.2 0.0055 1.2E-07 51.8 3.7 55 1-56 165-219 (909)
350 cd05712 Ig_Siglec_N Immunoglob 96.1 0.0059 1.3E-07 40.2 2.8 23 20-42 80-102 (119)
351 cd07691 Ig_CD3_gamma_delta Imm 95.9 0.039 8.4E-07 31.7 5.1 50 73-138 5-54 (69)
352 cd07706 IgV_TCR_delta Immunogl 95.8 0.079 1.7E-06 34.6 7.2 64 166-233 10-92 (116)
353 cd05720 Ig_CD8_alpha Immunoglo 95.7 0.0079 1.7E-07 38.5 2.0 20 21-40 70-89 (104)
354 PF09294 Interfer-bind: Interf 95.6 0.053 1.2E-06 34.7 5.7 82 163-248 8-104 (106)
355 cd05755 Ig2_ICAM-1_like Second 95.6 0.051 1.1E-06 34.3 5.3 66 169-238 15-87 (100)
356 cd05761 Ig2_Necl-1-4_like Seco 95.5 0.027 5.9E-07 34.2 4.0 44 1-45 20-70 (82)
357 KOG4367|consensus 95.5 0.031 6.8E-07 44.1 5.0 77 168-248 450-528 (699)
358 cd07705 Ig2_Necl-1 Second immu 95.5 0.047 1E-06 33.2 4.9 45 1-45 20-71 (83)
359 cd07694 Ig2_CD4 Second immunog 95.5 0.079 1.7E-06 32.3 5.6 25 18-42 49-73 (88)
360 PHA03042 CD47-like protein; Pr 95.4 0.18 3.9E-06 37.6 8.3 65 73-145 30-98 (286)
361 KOG1480|consensus 95.2 0.0032 6.9E-08 53.1 -1.3 119 21-143 86-209 (909)
362 cd04982 IgV_TCR_gamma Immunogl 95.1 0.27 5.8E-06 32.0 8.0 66 165-233 8-97 (116)
363 PF11465 Receptor_2B4: Natural 94.8 0.075 1.6E-06 33.5 4.3 44 109-153 63-106 (108)
364 cd04981 IgV_H Immunoglobulin ( 94.8 0.038 8.3E-07 36.2 3.2 21 21-41 77-97 (117)
365 cd00096 Ig Immunoglobulin doma 94.6 0.045 9.7E-07 31.2 3.0 27 17-43 40-66 (74)
366 PHA02982 hypothetical protein; 94.6 0.11 2.4E-06 37.0 5.1 75 69-144 34-127 (251)
367 cd00098 IgC Immunoglobulin Con 94.4 0.031 6.7E-07 34.9 2.0 44 1-44 35-86 (95)
368 PF02480 Herpes_gE: Alphaherpe 94.3 0.16 3.4E-06 41.5 6.2 40 18-57 87-126 (439)
369 PHA03283 envelope glycoprotein 94.2 2.7 6E-05 34.7 12.9 76 20-96 134-233 (542)
370 cd07691 Ig_CD3_gamma_delta Imm 94.0 0.12 2.6E-06 29.8 3.5 34 19-57 32-65 (69)
371 PF07354 Sp38: Zona-pellucida- 93.9 0.14 3.1E-06 38.0 4.7 47 91-140 14-60 (271)
372 PF05790 C2-set: Immunoglobuli 93.5 1 2.2E-05 27.2 7.4 42 14-55 37-78 (80)
373 KOG0613|consensus 92.5 0.92 2E-05 41.5 8.4 218 19-241 277-521 (1205)
374 cd07692 Ig_CD3_epsilon Immunog 91.9 1.1 2.5E-05 25.6 5.5 52 168-235 5-56 (65)
375 cd05884 Ig2_Necl-3 Second immu 90.0 2.9 6.3E-05 25.3 7.1 63 173-239 2-72 (83)
376 cd05721 IgV_CTLA-4 Immunoglobu 88.8 0.52 1.1E-05 30.5 2.8 19 21-39 75-93 (115)
377 PF02010 REJ: REJ domain; Int 88.7 0.91 2E-05 37.4 4.9 31 209-239 258-288 (440)
378 smart00407 IGc1 Immunoglobulin 88.4 1.1 2.5E-05 26.4 4.0 23 21-43 49-71 (75)
379 PF08205 C2-set_2: CD80-like C 87.9 1.4 2.9E-05 27.0 4.3 28 170-199 14-41 (89)
380 KOG4258|consensus 87.7 2.4 5.1E-05 37.4 6.6 84 169-255 841-928 (1025)
381 KOG4597|consensus 87.6 1.1 2.4E-05 36.3 4.4 80 70-151 207-291 (560)
382 PHA02865 MHC-like TNF binding 86.8 5.2 0.00011 31.5 7.5 22 76-97 216-238 (338)
383 PF08204 V-set_CD47: CD47 immu 86.5 0.47 1E-05 31.5 1.6 34 20-55 86-119 (130)
384 PHA02914 Immunoglobulin-like d 86.5 1.9 4.1E-05 34.3 5.0 40 21-62 82-121 (500)
385 PHA03269 envelope glycoprotein 85.3 20 0.00044 29.7 10.4 77 116-195 288-367 (566)
386 PF09240 IL6Ra-bind: Interleuk 85.0 7.4 0.00016 24.5 10.5 78 168-245 10-93 (99)
387 PHA03286 envelope glycoprotein 84.9 13 0.00028 30.4 8.9 77 20-96 127-225 (492)
388 cd05770 IgC_beta2m Class I maj 84.8 1.5 3.2E-05 27.4 3.2 43 1-43 37-83 (93)
389 cd05772 IgC_SIRP Signal-regula 84.5 3.4 7.4E-05 26.7 4.9 42 1-43 43-92 (111)
390 PHA03281 envelope glycoprotein 84.4 24 0.00051 29.8 12.6 79 18-96 296-394 (642)
391 PF07495 Y_Y_Y: Y_Y_Y domain; 84.3 5.7 0.00012 22.5 8.4 38 202-242 20-57 (66)
392 PF05790 C2-set: Immunoglobuli 83.8 7.4 0.00016 23.5 8.5 20 118-137 44-63 (80)
393 PF11344 DUF3146: Protein of u 83.6 0.77 1.7E-05 26.8 1.4 18 216-233 63-80 (80)
394 PHA03282 envelope glycoprotein 82.6 3.5 7.6E-05 33.6 5.1 43 14-56 118-161 (540)
395 cd07703 Ig2_Nectin-2_like Seco 82.0 10 0.00022 23.7 8.8 73 169-245 14-91 (95)
396 KOG4802|consensus 81.7 3.2 7E-05 33.2 4.5 43 211-255 209-255 (516)
397 cd07698 IgC_MHC_I_alpha3 Class 81.6 10 0.00022 23.5 7.0 17 170-188 14-30 (93)
398 PHA02982 hypothetical protein; 80.2 20 0.00044 26.1 9.2 72 19-98 99-171 (251)
399 PF00801 PKD: PKD domain; Int 79.2 9.7 0.00021 21.9 5.3 58 169-239 10-67 (69)
400 KOG0613|consensus 79.1 23 0.00051 33.1 9.4 165 71-248 241-428 (1205)
401 PF06328 Lep_receptor_Ig: Ig-l 78.2 13 0.00029 22.9 8.4 64 70-137 14-82 (89)
402 PHA03189 UL14 tegument protein 76.5 33 0.00072 26.6 8.5 22 123-144 139-160 (348)
403 PF02010 REJ: REJ domain; Int 75.2 7.7 0.00017 32.1 5.3 131 117-247 38-185 (440)
404 PF01688 Herpes_gI: Alphaherpe 74.8 10 0.00022 26.3 4.9 34 21-55 125-158 (161)
405 PHA02914 Immunoglobulin-like d 73.5 48 0.001 26.9 9.6 71 69-139 21-103 (500)
406 cd07689 Ig2_VCAM-1 Second immu 72.6 21 0.00046 22.5 6.6 18 168-187 13-30 (99)
407 KOG4597|consensus 71.1 4.7 0.0001 33.0 3.0 37 19-56 256-292 (560)
408 cd05766 IgC_MHC_II_beta Class 70.8 23 0.00049 22.0 6.1 24 170-195 14-38 (94)
409 PHA03052 Hypothetical protein; 69.2 20 0.00043 20.7 4.5 31 69-99 7-39 (69)
410 smart00089 PKD Repeats in poly 68.3 22 0.00047 20.9 7.9 57 170-239 14-70 (79)
411 PHA03271 envelope glycoprotein 67.2 34 0.00073 27.9 6.8 79 115-195 205-285 (490)
412 PHA03290 envelope glycoprotein 66.6 22 0.00047 27.9 5.5 36 21-57 130-165 (357)
413 cd05890 Ig2_Nectin-1_like Seco 65.0 32 0.00068 21.6 5.0 62 77-141 23-88 (98)
414 PHA03240 envelope glycoprotein 64.7 13 0.00029 26.9 3.8 28 115-142 103-130 (258)
415 PHA02935 Hypothetical protein; 63.2 29 0.00062 24.9 5.3 64 21-85 103-166 (349)
416 PHA03273 envelope glycoprotein 61.5 75 0.0016 26.4 7.8 77 117-196 198-276 (486)
417 cd05719 Ig2_PVR_like Second im 60.9 38 0.00083 21.1 8.4 68 170-242 15-88 (95)
418 KOG4258|consensus 60.8 71 0.0015 29.0 8.0 81 118-198 567-653 (1025)
419 PHA03283 envelope glycoprotein 57.0 50 0.0011 27.8 6.3 39 115-155 132-170 (542)
420 PHA03270 envelope glycoprotein 56.7 1.1E+02 0.0024 25.2 10.7 77 118-197 183-261 (466)
421 PF11049 KSHV_K1: Glycoprotein 56.1 22 0.00047 20.4 2.9 44 78-138 2-45 (71)
422 PHA03289 envelope glycoprotein 54.0 40 0.00086 26.4 5.0 35 21-56 123-157 (352)
423 KOG4152|consensus 53.4 19 0.00042 30.2 3.5 33 220-252 654-686 (830)
424 PHA03042 CD47-like protein; Pr 52.9 52 0.0011 25.2 5.3 25 21-46 72-96 (286)
425 PHA03292 envelope glycoprotein 51.3 49 0.0011 26.6 5.2 36 20-56 128-163 (413)
426 PHA03291 envelope glycoprotein 49.0 52 0.0011 26.1 5.0 35 21-56 130-164 (401)
427 PRK14081 triple tyrosine motif 48.0 2E+02 0.0044 25.6 19.9 165 71-253 302-477 (667)
428 PHA03240 envelope glycoprotein 47.8 34 0.00073 25.0 3.6 43 14-56 99-144 (258)
429 PHA03282 envelope glycoprotein 47.3 52 0.0011 27.4 4.9 24 118-141 125-148 (540)
430 PF10179 DUF2369: Uncharacteri 47.0 73 0.0016 25.0 5.5 26 209-236 13-38 (300)
431 cd00146 PKD polycystic kidney 45.9 62 0.0013 19.0 7.7 61 170-241 14-74 (81)
432 PF01688 Herpes_gI: Alphaherpe 45.9 60 0.0013 22.7 4.5 29 117-145 124-152 (161)
433 PF11896 DUF3416: Domain of un 45.1 1.2E+02 0.0025 22.0 6.8 66 166-232 22-88 (187)
434 PF05345 He_PIG: Putative Ig d 45.0 35 0.00077 18.2 2.7 16 222-237 34-49 (49)
435 PLN02533 probable purple acid 45.0 1.8E+02 0.004 24.2 9.1 71 155-231 39-121 (427)
436 KOG0200|consensus 44.1 2.3E+02 0.0049 25.0 14.3 115 14-138 7-138 (609)
437 PF13473 Cupredoxin_1: Cupredo 43.2 82 0.0018 19.8 4.7 61 159-231 33-93 (104)
438 KOG4228|consensus 42.9 52 0.0011 30.6 4.8 108 131-248 1-108 (1087)
439 KOG4802|consensus 37.8 2.3E+02 0.0049 23.5 7.0 119 118-240 210-341 (516)
440 KOG3611|consensus 37.8 35 0.00075 30.5 3.0 42 15-56 607-648 (737)
441 PF08329 ChitinaseA_N: Chitina 37.3 1.3E+02 0.0028 20.3 7.4 29 220-249 79-107 (133)
442 PF02480 Herpes_gE: Alphaherpe 35.5 32 0.00068 28.6 2.3 23 20-42 269-291 (439)
443 PF02124 Marek_A: Marek's dise 33.6 2E+02 0.0043 21.3 13.6 94 1-99 12-115 (211)
444 COG3422 Uncharacterized conser 32.8 26 0.00057 19.5 1.0 17 220-236 9-25 (59)
445 PF09134 Invasin_D3: Invasin, 32.3 1.4E+02 0.0029 19.0 4.4 40 2-42 32-71 (99)
446 PHA03290 envelope glycoprotein 25.0 2.2E+02 0.0047 22.7 4.9 27 116-142 128-154 (357)
447 KOG1026|consensus 24.9 2.1E+02 0.0045 26.0 5.4 28 70-98 203-230 (774)
448 PF02440 Adeno_E3_CR1: Adenovi 24.8 1.5E+02 0.0032 17.0 4.9 21 71-96 2-22 (63)
449 PF15096 G6B: G6B family 24.8 56 0.0012 23.2 1.7 26 27-56 81-106 (224)
450 PHA03286 envelope glycoprotein 24.6 4.3E+02 0.0093 22.3 11.2 40 113-153 123-162 (492)
451 PHA03289 envelope glycoprotein 24.1 2.2E+02 0.0047 22.6 4.7 29 117-145 122-150 (352)
452 cd02848 Chitinase_N_term Chiti 23.4 1.3E+02 0.0028 19.4 3.0 22 220-241 76-97 (106)
453 PHA03292 envelope glycoprotein 23.4 2E+02 0.0044 23.3 4.6 29 117-145 128-156 (413)
454 PF11781 RRN7: RNA polymerase 23.1 39 0.00085 16.7 0.6 10 29-38 20-29 (36)
455 smart00736 CADG Dystroglycan-t 22.5 2E+02 0.0044 17.8 8.2 30 220-250 63-92 (97)
456 PF10179 DUF2369: Uncharacteri 21.8 4.1E+02 0.0088 21.0 15.5 37 212-250 261-297 (300)
457 PHA03112 IL-18 binding protein 21.6 2.8E+02 0.006 19.0 7.2 28 71-98 35-63 (141)
458 PHA03189 UL14 tegument protein 21.2 1.1E+02 0.0023 24.0 2.7 21 26-46 139-159 (348)
459 PF13220 DUF4028: Protein of u 20.8 81 0.0018 17.1 1.5 20 27-46 5-24 (65)
460 PF13860 FlgD_ig: FlgD Ig-like 20.1 1.2E+02 0.0025 18.2 2.3 15 220-234 65-79 (81)
No 1
>KOG3513|consensus
Probab=100.00 E-value=6.8e-33 Score=230.37 Aligned_cols=245 Identities=24% Similarity=0.339 Sum_probs=193.5
Q ss_pred CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEE
Q psy11549 2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC 81 (261)
Q Consensus 2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C 81 (261)
|+++ +..+++|+.+..+++|.|.+++++|+|.|+|.|.|..|.. ..++.|.|+.++.+...+.. ..+..|+.+.|.|
T Consensus 462 k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~tri~~~P~~-~~v~~g~~v~l~C 538 (1051)
T KOG3513|consen 462 KGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVKDATRITLAPSN-TDVKVGESVTLTC 538 (1051)
T ss_pred cCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCcc-ceEEEEEEecCceEEeccch-hhhccCceEEEEe
Confidence 4444 4456777888899999999999999999999999999998 67899999999998875554 7889999999999
Q ss_pred EEeeCCC-CceeEEEEcCCccccccCCceEEeCCce--eEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549 82 AVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSRG--SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ 158 (261)
Q Consensus 82 ~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~ 158 (261)
++...+. ...|.|.++|..........++...+.. ..|+|.++...|+|.|.|+|+........ ...+.|..+|.
T Consensus 539 e~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~--~A~l~V~gpPg 616 (1051)
T KOG3513|consen 539 EASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASA--RADLLVRGPPG 616 (1051)
T ss_pred ecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhc--ccceEEecCCC
Confidence 9997765 4479999988655555555555443321 35999999999999999999986555554 45567779999
Q ss_pred CCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCC---C--CcEEEcCCCCCCccEEEEEEE
Q psy11549 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLD---T--PAFTLEDLGLDGTVLMRVVIS 231 (261)
Q Consensus 159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~---~--~~~~i~~~~l~~~~~Y~~~~~ 231 (261)
||.++.+.......+.|+|.++.+++.|+. |.++++..... .| .+.... . ..-++.+ |.|...|+|||.
T Consensus 617 pP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~--~W~~v~~vp~~~~~~~sa~vv~--L~Pwv~YeFRV~ 692 (1051)
T KOG3513|consen 617 PPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPG--KWKAVTTVPGNITGDESATVVN--LSPWVEYEFRVV 692 (1051)
T ss_pred CCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCC--cceEeeECCCcccCccceeEEc--cCCCcceEEEEE
Confidence 999999999999999999999999989976 99998877444 44 221111 1 1234556 999999999999
Q ss_pred EEcCCCcCCceeeeee-eecccccC
Q psy11549 232 GVNAKGRSLPVIWDDF-SMSGAHYA 255 (261)
Q Consensus 232 a~N~~G~~~~s~~~~~-~~~~~~~~ 255 (261)
|.|.+|.+++|.+.+. +++.+.|.
T Consensus 693 AvN~iG~gePS~pS~~~rT~ea~P~ 717 (1051)
T KOG3513|consen 693 AVNSIGIGEPSPPSEKVRTPEAAPS 717 (1051)
T ss_pred EEcccccCCCCCCccceecCCCCCc
Confidence 9999999999998864 34444443
No 2
>KOG3513|consensus
Probab=99.97 E-value=3.1e-28 Score=202.90 Aligned_cols=229 Identities=19% Similarity=0.216 Sum_probs=179.0
Q ss_pred CCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCc
Q psy11549 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPAR 90 (261)
Q Consensus 11 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 90 (261)
........+.+|.|.+++.+|+|.|.|.|.|..|.. ...+.|+|..+|++...... ..+..|+++.|.|.+.+.|.|
T Consensus 285 ~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d-~~~~~gs~v~~eC~a~g~P~p- 361 (1051)
T KOG3513|consen 285 RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQD-TEADTGSNVTLECKASGKPNP- 361 (1051)
T ss_pred cceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccce-eEecCCCCeEEEEEecCCCCC-
Confidence 344666677899999999999999999999999966 78899999999998877666 778899999999999999999
Q ss_pred eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC--CCCcceEEee
Q psy11549 91 SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNE 168 (261)
Q Consensus 91 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~--~p~~~~v~~~ 168 (261)
++.|.+|+..........++.+..+ .|.|.++...|+|.|.|.|.|..|..-..+.+.|....|.. .|....+...
T Consensus 362 ~v~WlkNg~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~ 439 (1051)
T KOG3513|consen 362 TVKWLKNGEPLEPAERDPRYKIDDG--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAV 439 (1051)
T ss_pred ceEEeeCCeecCccCCCcceEEeCC--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEE
Confidence 8999999853332223334555555 69999999999999999999999999887777776654443 3444445667
Q ss_pred cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549 169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS 248 (261)
Q Consensus 169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~ 248 (261)
.|..+.+.|.+ .+.|..-.-|.+........-.+....++.|.|.+++-+|.|.| +|.|.|.+|..+....+.|+
T Consensus 440 ~g~~v~i~C~~---~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~Y--tC~A~N~~G~a~~~~~L~Vk 514 (1051)
T KOG3513|consen 440 VGGTVTIDCKP---FASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKY--TCVAENKLGKAESTGNLIVK 514 (1051)
T ss_pred eCCeEEEeecc---CCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEE--EEEEEcccCccceEEEEEEe
Confidence 89999999997 56665533333433322111133344568999999999999999 99999999999888888776
Q ss_pred e
Q psy11549 249 M 249 (261)
Q Consensus 249 ~ 249 (261)
.
T Consensus 515 d 515 (1051)
T KOG3513|consen 515 D 515 (1051)
T ss_pred c
Confidence 3
No 3
>KOG4221|consensus
Probab=99.95 E-value=1.7e-26 Score=192.61 Aligned_cols=242 Identities=17% Similarity=0.253 Sum_probs=189.0
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~ 80 (261)
+|||+.|.-++.+......++|.|++++.+|+|.|+|+|.|..... ...+.|+|..+|.+...+.. ....++..+.|.
T Consensus 272 lrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~-l~A~e~~die~e 349 (1381)
T KOG4221|consen 272 LRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTT-LVAHESMDIEFE 349 (1381)
T ss_pred eeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcc-eeeeeccceeEe
Confidence 5899999877666666778899999999999999999999976665 56789999999988877666 556679999999
Q ss_pred EEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC------
Q psy11549 81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA------ 154 (261)
Q Consensus 81 C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~------ 154 (261)
|.+.+.|.+ .+.|+++++... . ...+....... +.|..+...|.|.|.|.+.|..|.....+.+.+...
T Consensus 350 c~~~g~p~p-~v~w~kNgd~~i-p--sdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s 424 (1381)
T KOG4221|consen 350 CPVSGKPIP-TVRWYKNGDRII-P--SDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASS 424 (1381)
T ss_pred CCCCCCCcc-eEEEEecCcccC-c--ccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCccccc
Confidence 999999878 899999996433 2 33334444333 888999999999999999999998887655544432
Q ss_pred -CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549 155 -GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISG 232 (261)
Q Consensus 155 -~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a 232 (261)
..|..|..+.+.......+.++|..+...+.++. |.|.|+...............+...++.+ |.+.+-|.|+|.|
T Consensus 425 ~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~n--l~p~t~Y~~rv~A 502 (1381)
T KOG4221|consen 425 DLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQN--LSPLTMYFFRVRA 502 (1381)
T ss_pred CccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeee--cccceeEEEEEec
Confidence 2344666766666778889999996655555644 88888777666544433333336777777 9999999999999
Q ss_pred EcCCCcCCceeeeeeeecc
Q psy11549 233 VNAKGRSLPVIWDDFSMSG 251 (261)
Q Consensus 233 ~N~~G~~~~s~~~~~~~~~ 251 (261)
.|..|.+.+|..+.|..++
T Consensus 503 ~n~~g~g~sS~pLkV~t~p 521 (1381)
T KOG4221|consen 503 KNEAGSGESSAPLKVTTQP 521 (1381)
T ss_pred cCcccCCccCCceEEecCC
Confidence 9999999999999998765
No 4
>KOG4194|consensus
Probab=99.93 E-value=2.2e-24 Score=169.15 Aligned_cols=210 Identities=17% Similarity=0.231 Sum_probs=157.5
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS 99 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~ 99 (261)
+.|.+.+|+..|.|.|+|.+.|..|...+..++|+|...|.+...+.. ++...|+.+.|.|.+.|.|.| .|.|-+.+.
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~d-ltl~tg~mArl~CaAtG~P~P-eIawqkdgg 651 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPED-LTLRTGQMARLECAATGHPRP-EIAWQKDGG 651 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCccc-ceeecccceeeeeeccCCCCc-ceeehhcCC
Confidence 479999999999999999999999999899999999999999887776 888999999999999999999 899988774
Q ss_pred cccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCC-cceEEeecCCeEEEEe
Q psy11549 100 GETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ-NCSVRNETTSSVHISC 177 (261)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~-~~~v~~~~~~~~~l~c 177 (261)
..++. ...+..+-..+-.+.|.++..+|+|.|+|+|+|..|.....+.++|.-..-+..|. +..| ..|+.+.|.|
T Consensus 652 -tdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V--~~get~vlqC 728 (873)
T KOG4194|consen 652 -TDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLV--VVGETLVLQC 728 (873)
T ss_pred -CCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEE--EecceEEEEE
Confidence 33333 23344443334479999999999999999999999998886666555332233443 2333 3599999999
Q ss_pred ecCCCCCCCe-EEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549 178 TPGYDGGLPQ-TFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239 (261)
Q Consensus 178 ~~~~~~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~ 239 (261)
.+ ++.|. +-..|++..+.-...- .........+++.+..+++.|.| +|...|..|.-
T Consensus 729 ~a---~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~y--Tcem~~~~~~~ 787 (873)
T KOG4194|consen 729 LA---EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIY--TCEMSNTLGTE 787 (873)
T ss_pred ec---CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceE--EEEEEeeccce
Confidence 97 44443 3334444433321111 23445567788888889999999 88888888843
No 5
>KOG4221|consensus
Probab=99.92 E-value=1.1e-23 Score=175.98 Aligned_cols=237 Identities=17% Similarity=0.195 Sum_probs=172.6
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCc-----eeEEEeeCCC
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR-----IVIVGASRSE 75 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~-----~~~~~~~~g~ 75 (261)
.||..||..++ +.+.+.++.|.|.+++.+|.|.|+|.+.+..-+..+..+.|+|...|...... .....+..|+
T Consensus 175 ~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~ 253 (1381)
T KOG4221|consen 175 LKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGD 253 (1381)
T ss_pred ecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCC
Confidence 37888888666 79999999999999999999999999999877766888999998444322111 1225688999
Q ss_pred cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG 155 (261)
Q Consensus 76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~ 155 (261)
.+.|.|.+.+.|.| .+.|.+++. .+..+..++...+. +.|.|.+++..|+|.|+|+|.|.......++.++|. .
T Consensus 254 ~v~leCvvs~~p~p-~v~Wlrng~--~i~~ds~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~--a 327 (1381)
T KOG4221|consen 254 DVVLECVVSGVPKP-SVKWLRNGE--KISVDSYRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL--A 327 (1381)
T ss_pred cEEEEEEecCCCCC-ceEEeeCCe--eeeecceEEEEecc-cceEEeccccccCceEEEEecCCCcccccceEEEEE--c
Confidence 99999999999999 899999774 44455555555433 369999999999999999999965555554455444 4
Q ss_pred CCC-CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-CccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549 156 KPQ-PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV 233 (261)
Q Consensus 156 ~p~-~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~ 233 (261)
+|. .+....+....+..+.+.|.. .+. |..-..||++. ...+.++........ +.|..+-+.+.+.| +|.|.
T Consensus 328 ~P~~~~~p~~l~A~e~~die~ec~~--~g~-p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~y--Qcvae 401 (1381)
T KOG4221|consen 328 PPGFTKAPTTLVAHESMDIEFECPV--SGK-PIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFY--QCVAE 401 (1381)
T ss_pred CCCCCCCCcceeeeeccceeEeCCC--CCC-CcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhh--hhhhc
Confidence 554 333334444558888888886 444 76655555553 333445544433323 77777778999999 99999
Q ss_pred cCCCcCCceeeeeeeec
Q psy11549 234 NAKGRSLPVIWDDFSMS 250 (261)
Q Consensus 234 N~~G~~~~s~~~~~~~~ 250 (261)
|.+|.......+++..+
T Consensus 402 n~~G~a~a~a~l~vv~~ 418 (1381)
T KOG4221|consen 402 NDAGSAQAAAQLEVVPQ 418 (1381)
T ss_pred cCcccccchhhheeccC
Confidence 99998877777765444
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.91 E-value=1.2e-21 Score=151.15 Aligned_cols=207 Identities=12% Similarity=0.179 Sum_probs=130.9
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec--eeecCceeEEEeeCCCcEEEEEEE-----eeCCCCcee
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSESVDIHCAV-----EADPPARSF 92 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p--~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~ 92 (261)
..|.|.++..+|+|.|+|.+.|..+.. +.++.|+|.... .+.... ....+.+|..+.+.|.. .+.+++ ++
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~-~~~~~~~g~~~~i~C~~~~~~~~~~~~~-~i 158 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLIS-YPQIVNERSTGEMVCPNINAFIASNVNA-DI 158 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceee-ccceecccCcEEEECCChhhcccCCCCc-eE
Confidence 359999999999999999999998775 556777776432 121111 12446689999999972 345555 89
Q ss_pred EEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee--EEEEEEeCCCCCCCC---cceEEe
Q psy11549 93 KWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP--CLYQVVLAGKPQPPQ---NCSVRN 167 (261)
Q Consensus 93 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~--~~~~v~~~~~p~~p~---~~~v~~ 167 (261)
.|+++.. +...++.... ...|.|.++..+|.|.|+|.+.|..+..... ..+.+.+..+..+|. ...+..
T Consensus 159 ~W~k~~~-----~~~~r~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~ 232 (326)
T PHA02785 159 IWSGHRR-----LRNKRLKQRT-PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVT 232 (326)
T ss_pred EEccCCc-----cCCcceEecC-CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEe
Confidence 9986431 2233333322 2369999999999999999999987765432 233344433222221 112333
Q ss_pred ecCCeEEEEeecCCCCCCCe--EEEEEEEeCCcc-------ceeEEEec---------CCCCcEEEcCCCCCCccEEEEE
Q psy11549 168 ETTSSVHISCTPGYDGGLPQ--TFTLELYSASDL-------NLLVNLTN---------LDTPAFTLEDLGLDGTVLMRVV 229 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~--~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~i~~~~l~~~~~Y~~~ 229 (261)
..|+.++|.|.+ .++.+. ...+|+++...- ........ .....|.|.+++.+|.|.| +
T Consensus 233 ~~G~~v~L~C~a--~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y--~ 308 (326)
T PHA02785 233 SIGSNLTIACRV--SLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF--T 308 (326)
T ss_pred cCCCcEEEEEEE--ECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee--E
Confidence 569999999998 333322 234444442210 00111111 0135789999999999999 9
Q ss_pred EEEEcCCCcC
Q psy11549 230 ISGVNAKGRS 239 (261)
Q Consensus 230 ~~a~N~~G~~ 239 (261)
|.|.|..|..
T Consensus 309 C~A~n~~~~~ 318 (326)
T PHA02785 309 CMAFTIPSIS 318 (326)
T ss_pred EEEEeccCce
Confidence 9999988644
No 7
>KOG4222|consensus
Probab=99.89 E-value=5e-22 Score=165.38 Aligned_cols=233 Identities=23% Similarity=0.342 Sum_probs=178.0
Q ss_pred CCCCeecc-CCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549 1 MAGGIPLA-HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI 79 (261)
Q Consensus 1 ~~ng~~l~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l 79 (261)
.|||++|. ....++...+++.|.|.++.+.|+|.|.|.+.|..|...+..++|.|.++|.+...... ..+..|..+.+
T Consensus 167 ~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~-~~v~~g~~~~f 245 (1281)
T KOG4222|consen 167 VKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKD-LAVLVGAAAEF 245 (1281)
T ss_pred ecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccccccc-ceeeccccccc
Confidence 48999996 34456667899999999999999999999999999998889999999999998877766 77889999999
Q ss_pred EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC-
Q psy11549 80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ- 158 (261)
Q Consensus 80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~- 158 (261)
.|.+.+.|.| ++.|.+.+. .+...++.+......+.|.++...|.|.|.|.+.|..|.....+.++|. .+|.
T Consensus 246 ~c~v~GdP~P-~Vrwkk~~~----~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~--apP~f 318 (1281)
T KOG4222|consen 246 DCRVGGDPQP-TVRWKKDDP----SLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ--APPSF 318 (1281)
T ss_pred ccccCCCCCC-ceeeeccCC----CCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe--cCccc
Confidence 9999999999 899987542 2344555554444579999999999999999999999998886666655 5664
Q ss_pred --CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--------EEecCCCCcEEEcCCCCCCccEEEE
Q psy11549 159 --PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--------NLTNLDTPAFTLEDLGLDGTVLMRV 228 (261)
Q Consensus 159 --~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~l~~~~~Y~~ 228 (261)
.|.+..+ ..+..+++.|.. .+.|..-++|.+........+ .........++|.+++-.+.|.|
T Consensus 319 ~kkp~dq~v--~lg~~vt~pc~~---~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Y-- 391 (1281)
T KOG4222|consen 319 GKKPRDQKV--ALGGTVTFPCET---LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYY-- 391 (1281)
T ss_pred ccccCcccc--ccCceEEeeeec---CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceE--
Confidence 4444444 348999999997 444544444444432221111 11222345899999999999999
Q ss_pred EEEEEcCCCcCCceeeeeee
Q psy11549 229 VISGVNAKGRSLPVIWDDFS 248 (261)
Q Consensus 229 ~~~a~N~~G~~~~s~~~~~~ 248 (261)
-|...|.+|.+.....++++
T Consensus 392 vcq~~~~~~ss~~~a~~~qt 411 (1281)
T KOG4222|consen 392 VCQTQTSAGSSLTKAYLEQT 411 (1281)
T ss_pred eecccccccccccceeEEEE
Confidence 89999999977766666554
No 8
>KOG4222|consensus
Probab=99.85 E-value=6e-20 Score=153.22 Aligned_cols=240 Identities=20% Similarity=0.189 Sum_probs=173.3
Q ss_pred CCCCeecc-CC-CCceEEEECCeEEEccCC-----CCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeC
Q psy11549 1 MAGGIPLA-HN-TSARIILSNQSLVLQKVS-----RQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73 (261)
Q Consensus 1 ~~ng~~l~-~~-~~~~~~~~~~~L~i~~~~-----~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~ 73 (261)
||||.... .. .+-+..+.+++|.+..+- ..|.|.|+|.|.|..|...++.+.|.|...+.-.......+.+..
T Consensus 66 ~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ 145 (1281)
T KOG4222|consen 66 YKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAV 145 (1281)
T ss_pred ccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccc
Confidence 68886543 22 344677788888887652 249999999999999998888889988866654433333377889
Q ss_pred CCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549 74 SESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152 (261)
Q Consensus 74 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 152 (261)
|+.+.|.|.-... |.| .+.|.++++...+........+.++ .|.|.++...|.|.|.|.++|..|..... ..++.
T Consensus 146 ge~avlEcgpP~ghpep-tvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsnvrksD~GtY~CVatNmvG~ReS~-~A~ls 221 (1281)
T KOG4222|consen 146 GEEAVLECGPPRGHPEP-TVSWVKDGKPLDHYDVPIIALISGG--NLLISNVRKSDEGTYACVATNMVGERESI-PARLS 221 (1281)
T ss_pred cceeEEeccCCCCCCCC-cceeecCCCccccccceeEEEecCC--cEEEeccccCCCceeeeeecccccccccc-cceee
Confidence 9999999976654 446 8999998864432222223334544 69999999999999999999999876653 55566
Q ss_pred eCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-EEEecCCCCcEEEcCCCCCCccEEEE
Q psy11549 153 LAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-VNLTNLDTPAFTLEDLGLDGTVLMRV 228 (261)
Q Consensus 153 ~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~Y~~ 228 (261)
+..+|. +|.++.+.. +..+.+.|.+ ++.|..-++|.+.....+.. ..+. ..+..+.|.++.-.+.|.|
T Consensus 222 v~e~P~f~~rp~~~~v~~--g~~~~f~c~v---~GdP~P~Vrwkk~~~~~P~~ry~i~-~d~qtl~i~r~tp~deg~y-- 293 (1281)
T KOG4222|consen 222 VQEKPWFWKRPKDLAVLV--GAAAEFDCRV---GGDPQPTVRWKKDDPSLPRSRYSIL-DDTQTLRIDRVTPTDEGTY-- 293 (1281)
T ss_pred eccCCccccccccceeec--cccccccccc---CCCCCCceeeeccCCCCCccceeee-eccccccccccCCCcccce--
Confidence 777775 666666643 7779999997 67777666665544333322 2222 2336678888666688999
Q ss_pred EEEEEcCCCcCCceeeeeeeeccc
Q psy11549 229 VISGVNAKGRSLPVIWDDFSMSGA 252 (261)
Q Consensus 229 ~~~a~N~~G~~~~s~~~~~~~~~~ 252 (261)
-|.|.|.+|.-+++..+.|..+..
T Consensus 294 ~C~a~n~vG~l~asa~ltV~apP~ 317 (1281)
T KOG4222|consen 294 VCPAENLVGGLEASATLTVQAPPS 317 (1281)
T ss_pred eeeccccccccccccceEEecCcc
Confidence 999999999999999999985543
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.77 E-value=2.3e-17 Score=120.03 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=83.7
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeC-----CCCcee
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEAD-----PPARSF 92 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~ 92 (261)
++++|.|.+++.+|+|.|+|+|.|..+.. ...+.|.|..++ . ...+..|+.+.|.|.+.+. |.| ++
T Consensus 96 r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~------~-~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I 166 (227)
T PHA02826 96 RSENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGT------I-NYQFNSGKDSKLHCYGTDGISSTFKDY-TL 166 (227)
T ss_pred CCCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCC------c-cceEecCCCEEEEeeCCCCccccCCCc-eE
Confidence 46799999999999999999999987665 556777774221 1 1456789999999998643 345 89
Q ss_pred EEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 93 KWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 93 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
.|++++.. +. ...++........|.|.++..+|+|.|+|.|....
T Consensus 167 ~WyKng~~--l~-~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 167 TWYKNGNI--VL-YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEEECCEE--CC-CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 99998743 32 22344444444579999999999999999999864
No 10
>KOG4194|consensus
Probab=99.72 E-value=5.7e-16 Score=122.56 Aligned_cols=138 Identities=20% Similarity=0.312 Sum_probs=108.4
Q ss_pred CCee-ccCCCCceEEE--ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549 3 GGIP-LAHNTSARIIL--SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI 79 (261)
Q Consensus 3 ng~~-l~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l 79 (261)
+|.+ .+....|++.+ .+.-+.|.+++.+|+|.|+|+|.|..|+. +..++|+|.+.|.+..+... ..+..|+++.|
T Consensus 649 dggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~-~~V~~get~vl 726 (873)
T KOG4194|consen 649 DGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLED-QLVVVGETLVL 726 (873)
T ss_pred cCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCcccccccc-eEEEecceEEE
Confidence 4444 44444444443 45689999999999999999999999998 78899999999998877766 77889999999
Q ss_pred EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
.|.+.+.|+.+++.|++.++... . ..+.........+.+.+...+|+|.|+|.+.+..|....
T Consensus 727 qC~a~~~~a~pr~~W~k~d~pil--~-t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~ 789 (873)
T KOG4194|consen 727 QCLAEGAPADPRLEWFKEDKPIL--I-TERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERI 789 (873)
T ss_pred EEecCCCCCCccccccCCCCceE--E-eecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceee
Confidence 99999999833899998764322 2 223334445557899999999999999999998876655
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.70 E-value=1.4e-15 Score=117.56 Aligned_cols=131 Identities=25% Similarity=0.319 Sum_probs=90.0
Q ss_pred CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcce---eeeEEEEEE---eeceeecCceeEEEeeCCCcEEEEEEEee
Q psy11549 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT---SNQLKLRVK---YAPICKSDRIVIVGASRSESVDIHCAVEA 85 (261)
Q Consensus 12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~---s~~~~l~V~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~ 85 (261)
.+.....++.|.|.+++.+|+|.|+|.+.|..+... +..+.|.|. .+|.+..+ .. ..+..|+.+.|.|.+.+
T Consensus 169 ~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p-~~-~~~~~G~~v~L~C~a~g 246 (326)
T PHA02785 169 KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLP-EG-VVTSIGSNLTIACRVSL 246 (326)
T ss_pred cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCC-Cc-EEecCCCcEEEEEEEEC
Confidence 344445567999999999999999999999877642 234556664 23433333 22 56778999999999998
Q ss_pred CCCC--ceeEEEEcCCccccc--cCCceEEeCC----------ceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549 86 DPPA--RSFKWKFNNSGETLD--VGSERFSSGS----------RGSMLRYTPVTELDYGTLSCAAQNAIGTQV 144 (261)
Q Consensus 86 ~~~~--~~~~W~~~~~~~~~~--~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 144 (261)
.|++ ..+.|++++...... ....++.... ....|.|.++..+|.|.|+|.|.|..+...
T Consensus 247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 8763 379999987421110 0111221111 134799999999999999999999875443
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.68 E-value=1.2e-15 Score=96.69 Aligned_cols=87 Identities=21% Similarity=0.409 Sum_probs=69.4
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
+.+..|+.+.|.|.+.|.|++ ++.|++++.. +... ..++......+.|.|.++..+|+|.|+|.|.|..|....
T Consensus 10 ~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~--l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~-- 84 (98)
T cd05762 10 MKVRAGESVELFCKVTGTQPI-TCTWMKFRKQ--IQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA-- 84 (98)
T ss_pred EEEECCCEEEEEEEEcccCCC-ceEEEECCEE--ecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeE--
Confidence 678899999999999999988 8999998742 3222 223333455678999999999999999999999999888
Q ss_pred EEEEEeCCCCCCC
Q psy11549 148 LYQVVLAGKPQPP 160 (261)
Q Consensus 148 ~~~v~~~~~p~~p 160 (261)
.+.|.|.++|.+|
T Consensus 85 ~~~l~V~~~P~pP 97 (98)
T cd05762 85 QVNLTVVDKPDPP 97 (98)
T ss_pred EEEEEEecCCCCC
Confidence 5566666888777
No 13
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.63 E-value=1.4e-14 Score=98.45 Aligned_cols=118 Identities=20% Similarity=0.300 Sum_probs=81.3
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC-ceeEEEEcCC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA-RSFKWKFNNS 99 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~~ 99 (261)
+|+|.+++.+|+|.|+|.+.+..+.. ...++|.|..+|.+...... .....|..+.|.|.+.+..++ .++.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 79999999999999999998887775 67789999988877544333 333478899999999997553 5899999874
Q ss_pred ccccc---cCCce---EEe--CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 100 GETLD---VGSER---FSS--GSR---GSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 100 ~~~~~---~~~~~---~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
..... ..... ... ++. .+.|.+.....++...|+|.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 31110 01110 111 111 2356665555555679999998753
No 14
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.61 E-value=1e-13 Score=101.07 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=97.4
Q ss_pred EEeeCCCcEEEEEEEeeCCC----------CceeEEEEcCCccccccCCce--------EEeCCceeEEEEecCCCCcCe
Q psy11549 69 VGASRSESVDIHCAVEADPP----------ARSFKWKFNNSGETLDVGSER--------FSSGSRGSMLRYTPVTELDYG 130 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~----------~~~~~W~~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g 130 (261)
+.+.+|+++.|.|.+.+.+. ..++.|++.+...-....+.+ .........|.|.++..+|+|
T Consensus 32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG 111 (227)
T PHA02826 32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG 111 (227)
T ss_pred EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence 66789999999999866331 127999987531101000010 011112347999999999999
Q ss_pred EEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCC--CCCCCeEEEEEEEeCCccce--eEEEe
Q psy11549 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY--DGGLPQTFTLELYSASDLNL--LVNLT 206 (261)
Q Consensus 131 ~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~--~~~~p~~~~~~~~~~~~~~~--~~~~~ 206 (261)
.|+|.|.|..+..... +.+.|..+ +....+ ..|+.+.|.|.+.. ..+.|..-+.|+++...... .....
T Consensus 112 ~Y~C~a~N~~~~~~~~--i~L~V~~~---~~~~~~--~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~ 184 (227)
T PHA02826 112 IYICTISSGNICEEST--IRLTFDSG---TINYQF--NSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR 184 (227)
T ss_pred EEEEEEEECCcceEEE--EEEEEecC---CccceE--ecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe
Confidence 9999999987765554 34444222 222333 45999999998621 11234344455555432211 12222
Q ss_pred cCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549 207 NLDTPAFTLEDLGLDGTVLMRVVISGVNAK 236 (261)
Q Consensus 207 ~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~ 236 (261)
.....|.|.+++.+|+|.| +|.|....
T Consensus 185 -~~~~~L~I~~V~~~DsG~Y--tC~a~~~~ 211 (227)
T PHA02826 185 -NNNSTLVIKSATHDDSGIY--TCNLRFNK 211 (227)
T ss_pred -CCCCEEEECcCCHHhCEEE--EEEEEEeE
Confidence 2346899999999999999 88887654
No 15
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=6.3e-14 Score=87.10 Aligned_cols=82 Identities=22% Similarity=0.476 Sum_probs=61.6
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeC------CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG------SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
|+.+.|.|.+.+.|++ .+.|++++. .+.....++... ...+.|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~--~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~-- 75 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDR--IINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG-- 75 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCE--ECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE--
Confidence 7889999999999877 899999774 232222233221 12357999999999999999999999998887
Q ss_pred EEEEEeCCCCCCC
Q psy11549 148 LYQVVLAGKPQPP 160 (261)
Q Consensus 148 ~~~v~~~~~p~~p 160 (261)
.+.+.|..+|.+|
T Consensus 76 ~~~L~V~~~P~~P 88 (88)
T cd05735 76 IIQLTVQEPPDPP 88 (88)
T ss_pred EEEEEEeCCCCCC
Confidence 4555666777765
No 16
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.56 E-value=1.6e-13 Score=84.83 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=60.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.+..|+.+.|.|.+.+.|.| .+.|++++.. +.....++. .....+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~--i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAP-TVTWSRGDKA--FTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCC-eEEEEECCEE--CccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence 567899999999999999999 8999998743 322222333 33445689999999999999999999999987764
Q ss_pred EE
Q psy11549 147 CL 148 (261)
Q Consensus 147 ~~ 148 (261)
..
T Consensus 82 ~~ 83 (86)
T cd05894 82 LF 83 (86)
T ss_pred EE
Confidence 33
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.55 E-value=2.1e-13 Score=84.81 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=63.7
Q ss_pred ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
|.+...... ..+..|+.+.|.|.+.+.|.| .+.|++++.. +. ...++...+ ..|.|.++..+|+|.|+|.|.|
T Consensus 2 p~i~~~~~~-~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~--~~-~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 2 ADINVKFKD-TYALKGQNVTLECFALGNPVP-VIRWRKILEP--MP-ATAEISMSG--AVLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CceEEcccc-EEEeCCCcEEEEEEecccCCC-EEEEEECCcC--CC-CCCEEecCC--CEEEECcCChhhCEEEEEEEEc
Confidence 333333333 667899999999999999998 8999998742 21 122333332 3799999999999999999999
Q ss_pred CCceEEeeEEEEE
Q psy11549 139 AIGTQVTPCLYQV 151 (261)
Q Consensus 139 ~~~~~~~~~~~~v 151 (261)
..|.......+.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd05851 75 IKGKDKHQARVYV 87 (88)
T ss_pred CCCceEEEEEEEE
Confidence 9998877555443
No 18
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.55 E-value=1.7e-13 Score=86.94 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=61.5
Q ss_pred EEEeeCCCcEEEEEEEee-CCCCceeEEEEcCCccccccCCceEEeCC------ceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 68 IVGASRSESVDIHCAVEA-DPPARSFKWKFNNSGETLDVGSERFSSGS------RGSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
.+.+..|+++.|.|.+.+ .|+| .+.|++++. .+........... ..+.|.|..+..+|+|.|+|.|.|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~--~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPP-HINWTYDNR--TLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCC-ccEEEeCCe--eCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 377889999999999999 6666 899999874 2322222222211 24689999999999999999999999
Q ss_pred ceEEeeEEEEEE
Q psy11549 141 GTQVTPCLYQVV 152 (261)
Q Consensus 141 ~~~~~~~~~~v~ 152 (261)
|.......+.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 987775555443
No 19
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.52 E-value=4.8e-13 Score=84.77 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=63.5
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
..+..|+.+.|.|.+.+.|.| .+.|++++.. +.....++......+.|.|.++..+|.|.|+|.|.|..|.......
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEP-TMTWTKDGEP--IESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCC-EEEEEECCEE--CcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 567899999999999999988 8999997742 2222234444444457999999999999999999999998877655
Q ss_pred EEEE
Q psy11549 149 YQVV 152 (261)
Q Consensus 149 ~~v~ 152 (261)
+.|.
T Consensus 90 L~V~ 93 (95)
T cd05730 90 LKVF 93 (95)
T ss_pred EEEE
Confidence 5554
No 20
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.51 E-value=5.1e-13 Score=83.97 Aligned_cols=75 Identities=19% Similarity=0.331 Sum_probs=58.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-CceEEeC-CceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSG-SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.+.+|+++.|.|.+.+.|.| .+.|++++.. +... ...+... +....|.|.++..+|+|.|+|.|.|..|.....
T Consensus 11 v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 11 VTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQA--LALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred EEEeCCCcEEEEEEEEecCCC-eEEEEECCEE--CccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence 678899999999999999988 8999998742 2222 2222222 334579999999999999999999999987763
No 21
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.50 E-value=2.5e-13 Score=81.69 Aligned_cols=73 Identities=29% Similarity=0.434 Sum_probs=56.0
Q ss_pred CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
+|+.+.|.|.+.+.|.| .+.|++++.. +... .++.... ...|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~--~~~~-~~~~~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQ--LSVD-RRHLVLS-SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEE--CCCC-CCeEEcc-CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 58899999999999998 8999997742 2222 2222222 23799999999999999999999999887754443
No 22
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.50 E-value=1e-12 Score=82.50 Aligned_cols=88 Identities=25% Similarity=0.373 Sum_probs=66.7
Q ss_pred eeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 60 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
.+...+.. +.+..|+++.|.|.+.+.|.+ ++.|++++.. ........+......+.|.|.++..+|+|.|+|.+.|.
T Consensus 2 ~~~~~~~~-~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 2 VFTKKPKD-VTVKEGESVTLECEVSGNPPP-TVTWYKNGRP-LTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEESSE-EEEETTSEEEEEEEEEESSSS-EEEEEETTEE-EESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred EEEEecCC-EEEeCCCEEEEEEEEEeCCCC-cccccccccc-eeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 34444433 788899999999999999877 8999998632 22223334445557789999999999999999999999
Q ss_pred CceEEeeEEEE
Q psy11549 140 IGTQVTPCLYQ 150 (261)
Q Consensus 140 ~~~~~~~~~~~ 150 (261)
.|.......+.
T Consensus 79 ~g~~~~~~~l~ 89 (90)
T PF07679_consen 79 SGEATASVNLT 89 (90)
T ss_dssp TEEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 88877754443
No 23
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.50 E-value=7.2e-13 Score=80.12 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=56.1
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 151 (261)
|+.+.|.|.+.+.|.| ++.|++++..........++.... ..|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999988 899999874221111122333332 36999999999999999999999998877544443
No 24
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.49 E-value=8.9e-13 Score=82.90 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=63.9
Q ss_pred eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-CceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549 58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSGSRGSMLRYTPVTELDYGTLSCAA 136 (261)
Q Consensus 58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 136 (261)
+|.+...+.. ..+..|+.+.|.|.+.+.|.| .+.|++++. .+... ...+......+.|.|.++..+|+|.|+|.|
T Consensus 3 ~~~~~~~p~~-~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~--~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 3 PATILTKPRS-LTVSEGESARFSCDVDGEPAP-TVTWMREGQ--IIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCcccccCcc-EEEeCCCcEEEEEEEeecCCC-EEEEEECCE--ECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 4555544444 778899999999999999998 899999864 22111 122223344568999999999999999999
Q ss_pred EcCCceEEee
Q psy11549 137 QNAIGTQVTP 146 (261)
Q Consensus 137 ~~~~~~~~~~ 146 (261)
.|..|.....
T Consensus 79 ~N~~G~~~~~ 88 (92)
T cd05747 79 ENSEGKQEAQ 88 (92)
T ss_pred EcCCCCEeEE
Confidence 9999987764
No 25
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.49 E-value=3.9e-13 Score=80.50 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=54.3
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
+.|.|.+.+.|.| .+.|++++.. +.....++.. ......|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~--i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEM--VQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEE--CcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 4799999999999 8999998743 3222334433 22234799999999999999999999999888765554
No 26
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.48 E-value=5.9e-13 Score=80.61 Aligned_cols=75 Identities=21% Similarity=0.472 Sum_probs=57.0
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA 154 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~ 154 (261)
++|.|.+.+.|.| .+.|++++.. +......+........|.|.++..+|+|.|.|.|.|..|....+..+.|.+.
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTP--LSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEE--CCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4799999999988 8999998742 3222233333333457999999999999999999999998766557777653
No 27
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.48 E-value=9.8e-13 Score=85.12 Aligned_cols=97 Identities=27% Similarity=0.547 Sum_probs=66.4
Q ss_pred EeeceeecCceeE-EEe--eCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe------CCceeEEEEecCC-
Q psy11549 56 KYAPICKSDRIVI-VGA--SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS------GSRGSMLRYTPVT- 125 (261)
Q Consensus 56 ~~~p~~~~~~~~~-~~~--~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~- 125 (261)
.++|.+..++... +.. ..|..+.|.|.+.+.|++ .+.|++++. .+.....++.. ....+.|.|.++.
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~--~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~ 78 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGV--PLDLGNPRYEETTEHTGTVHTSILTIINVSA 78 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCE--ECCCCCCeEEEEeeccCccceeEEEECcCCc
Confidence 4566665444321 222 356899999999999988 899999874 23222333321 1123579999987
Q ss_pred CCcCeEEEEEEEcCCceEEeeEEEEEEeCCCC
Q psy11549 126 ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP 157 (261)
Q Consensus 126 ~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p 157 (261)
.+|.|.|+|.|.|..|.... .+.+.+..+|
T Consensus 79 ~~D~G~Y~C~A~N~~G~~~~--~i~L~~~~~p 108 (109)
T cd05773 79 ALDYALFTCTAHNSLGEDSL--DIQLVSTSRP 108 (109)
T ss_pred cCCCEEEEEEEEeCCccCcE--EEEEEecCCC
Confidence 58999999999999998766 5566665655
No 28
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.48 E-value=4.5e-13 Score=78.03 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=52.7
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 152 (261)
+.|.|.+.+.|.| .+.|++++.. +. . ......|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~--l~--~-----~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKL--IS--G-----KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEE--Cc--c-----cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4789999999999 8999998742 21 1 1123479999999999999999999999987776666654
No 29
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=1.1e-12 Score=83.44 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=60.2
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc----CCceEEeC--CceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV----GSERFSSG--SRGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
..+.+|+.++|.|.+.+.|.| .+.|++...+..+.. ...++... .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 11 ETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG 89 (98)
T ss_pred EEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence 667899999999999999988 899998643332211 12234332 23457999999999999999999999998
Q ss_pred EEeeEEE
Q psy11549 143 QVTPCLY 149 (261)
Q Consensus 143 ~~~~~~~ 149 (261)
...+..+
T Consensus 90 ~~~~~~l 96 (98)
T cd05870 90 HQKSMYL 96 (98)
T ss_pred ceeEEEE
Confidence 7764443
No 30
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.47 E-value=1e-12 Score=81.43 Aligned_cols=80 Identities=15% Similarity=0.293 Sum_probs=58.7
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
..+..|+.+.|.|.+.+.|.| .+.|++++...........+........|.|.++..+|+|.|+|.|.|..|.......
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 457789999999999999887 8999998743221111111222233446899999999999999999999998877443
Q ss_pred E
Q psy11549 149 Y 149 (261)
Q Consensus 149 ~ 149 (261)
+
T Consensus 83 l 83 (85)
T cd05857 83 L 83 (85)
T ss_pred E
Confidence 3
No 31
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.47 E-value=1.5e-12 Score=82.80 Aligned_cols=81 Identities=23% Similarity=0.226 Sum_probs=61.5
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeC-------CceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG-------SRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
..+..|+.+.|.|.+.+.|+| .+.|++++.. +......+... ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~--l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPP-QIRWLKDNRT--LIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCC-ceEEEECCEE--CcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 667889999999999999999 8999998743 22222221111 1235799999999999999999999999
Q ss_pred eEEeeEEEEEE
Q psy11549 142 TQVTPCLYQVV 152 (261)
Q Consensus 142 ~~~~~~~~~v~ 152 (261)
....+..+.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 88775555543
No 32
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.47 E-value=6.5e-13 Score=79.65 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=54.2
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
+.|.|.+.|.|.| .+.|++++.. +.....++.... ....|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~--l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENES--LTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEE--CCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 4799999999999 8999998743 222233444321 223699999999999999999999999988865554
No 33
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=1.6e-12 Score=80.16 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=56.4
Q ss_pred CcEEEEEEEeeCCCC-ceeEEEEcCCccccccCCceE---EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 75 ESVDIHCAVEADPPA-RSFKWKFNNSGETLDVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 75 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
++++|.|.+.+.|.| ..+.|++++..........++ ........|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999876 368999987432221112222 2223345899999999999999999999999888855554
Q ss_pred EE
Q psy11549 151 VV 152 (261)
Q Consensus 151 v~ 152 (261)
|.
T Consensus 81 V~ 82 (85)
T cd05854 81 VR 82 (85)
T ss_pred EE
Confidence 43
No 34
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.46 E-value=1.4e-12 Score=78.65 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=55.9
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 151 (261)
|+.+.|.|.+.+.|.| ++.|++++...............+ ..|.|.++...|.|.|+|.|.|..|.....+.+.|
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6789999999999998 899999874321111111222332 36889999999999999999999999888655543
No 35
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=9.5e-13 Score=80.31 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=57.5
Q ss_pred CcEEEEEEEeeCC-CCceeEEEEcCCccccccCCceEEeC---CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 75 ESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSG---SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 75 ~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
+++.|.|.+.+.+ .+..+.|++++..........++... .....|.|.++...|+|.|+|.|.|..+....++.+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999998854 34489999998543322334455442 2334799999999999999999999999888866665
Q ss_pred EE
Q psy11549 151 VV 152 (261)
Q Consensus 151 v~ 152 (261)
|.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 54
No 36
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.46 E-value=1.1e-12 Score=78.30 Aligned_cols=72 Identities=28% Similarity=0.444 Sum_probs=56.6
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
|+.+.|.|.+.+.|.| .+.|++++. .+ ....++..... ..|.|.++..+|.|.|+|.|.|..|....+..+.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~--~l-~~~~r~~~~~~-g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTE--LL-VNNSRISIWDD-GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCE--ec-ccCCCEEEcCC-CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 6789999999999988 899999764 22 23345544332 3699999999999999999999999888865554
No 37
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.45 E-value=1.4e-12 Score=78.65 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=53.9
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 151 (261)
+.|.|.+.+.|.| .+.|++++..........++........|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4789999999999 8999998742111122233333333347999999999999999999999998777544443
No 38
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.44 E-value=6.1e-12 Score=78.43 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=59.3
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
..+..|+.+.|.|.+.+.|.| .+.|++++.... ....... ....|.|.++..+|+|.|+|.+.|..|.......
T Consensus 11 ~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~---~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 84 (88)
T cd04968 11 TYALKGQNVTLECFALGNPVP-QIKWRKVDGSMP---SSAEISM--SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGR 84 (88)
T ss_pred eEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCC---CccEEEE--eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEE
Confidence 557799999999999999988 899999764211 1122222 2347999999999999999999999998777555
Q ss_pred EEE
Q psy11549 149 YQV 151 (261)
Q Consensus 149 ~~v 151 (261)
+.|
T Consensus 85 l~V 87 (88)
T cd04968 85 IYV 87 (88)
T ss_pred EEE
Confidence 543
No 39
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.43 E-value=3e-12 Score=77.80 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=56.3
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 151 (261)
|+++.|.|.+.+.|.| .+.|++++.. +.. ..++ ........|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~--~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGH--VPD-SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeE--CCC-CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6789999999999988 8999987642 211 2222 33444568999999999999999999999998766544443
No 40
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.43 E-value=5.2e-12 Score=80.20 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=58.0
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--cCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--VGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV 144 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 144 (261)
..+..|+.++|.|.+.+.|.| .+.|++++...... ....++.. ....+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 90 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDS 90 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCee
Confidence 334568999999999999988 89999976421110 01122222 22345799999999999999999999999887
Q ss_pred eeEEE
Q psy11549 145 TPCLY 149 (261)
Q Consensus 145 ~~~~~ 149 (261)
.+..+
T Consensus 91 ~~~~l 95 (97)
T cd05869 91 QSMYL 95 (97)
T ss_pred EEEEE
Confidence 75444
No 41
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.43 E-value=5.1e-12 Score=79.10 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=59.6
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCc-eEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
..+..|+.+.|.|.+.+.|.| .+.|++++.. +..... ..........|.|.++..+|.|.|+|.|.|..|......
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 10 TVVYEGGTATIRCTAEGSPLP-KVEWIIAGLI--VIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred EEEcCCCcEEEEEEEEEcCCC-eEEEEECCEE--ccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 447899999999999999988 8999998742 211111 112233355899999999999999999999999877754
Q ss_pred EE
Q psy11549 148 LY 149 (261)
Q Consensus 148 ~~ 149 (261)
.+
T Consensus 87 ~L 88 (90)
T cd04972 87 QV 88 (90)
T ss_pred EE
Confidence 43
No 42
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.43 E-value=4.2e-12 Score=79.24 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=56.2
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
+.+.+|++++|.|.+.+. .| .+.|++++.. + ...++........|.|.++..+|+|.|.|.|.|..|....
T Consensus 13 ~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~--l--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 13 QPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSL--L--VPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cccccCCcEEEEEEeCCC-CC-EEEEEECCEE--C--CCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 568899999999999999 66 8999998742 2 2223444344457999999999999999999999987544
No 43
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.42 E-value=6.1e-12 Score=79.19 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=57.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCC-ceEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAI-GTQV 144 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~ 144 (261)
..+..|+.+.|.|.+.+.|.++++.|++++. ..+.....++.. ....+.|.|.++..+|+|.|+|.|.|.. |...
T Consensus 10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g-~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 10 GEISVGESKFFLCQVAGEAKDKDISWFSPNG-EKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred cEECCCCeEEEEEEEeCCCCCCEEEEECCCC-cCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 4577899999999999998533899997332 222222323322 2234689999999999999999999986 6666
Q ss_pred eeEEE
Q psy11549 145 TPCLY 149 (261)
Q Consensus 145 ~~~~~ 149 (261)
.+..+
T Consensus 89 ~s~~l 93 (96)
T cd05865 89 ATVNV 93 (96)
T ss_pred EEEEE
Confidence 64443
No 44
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.42 E-value=3.1e-12 Score=77.50 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=55.0
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
|+.+.|.|.+.+.|.| .+.|++++.. +...............|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVP--IEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEE--CCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 6789999999999988 8999998742 211111111222234799999999999999999999999887754444
No 45
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=9.5e-12 Score=77.56 Aligned_cols=73 Identities=26% Similarity=0.311 Sum_probs=55.5
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
..+..|+.+.|.|.+.+.|. .+.|++++. ..+. ...++.. .+..+.|.|.++..+|+|.|+|.|.|..|....
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g-~~~~-~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 84 (92)
T cd05866 10 VELSVGESKFFTCTAIGEPE--SIDWYNPQG-EKIV-SSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 84 (92)
T ss_pred eEEcCCCeEEEEEEEEEeCC--eEEEEeCCC-eEec-CCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence 56779999999999999775 799998643 2222 2233333 344568999999999999999999999887643
No 46
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.41 E-value=4.6e-12 Score=76.17 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=53.2
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
+.|.|.+.+.|.| .+.|++++.. +.....++.. ......|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~--i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEM--LTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEE--CCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 4799999999998 8999998743 2222233332 2233469999999999999999999999988775444
No 47
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.40 E-value=5.9e-12 Score=78.96 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=57.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCc-eEEe-CCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSS-GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.+.+|+.+.|.|.+.+.|.| .+.|++++.. +..... .... ......|.|.++..+|+|.|+|.|.|..|.....
T Consensus 11 v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 11 VTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQD--IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred EEEcCCCEEEEEEEEEEeCCC-eEEEEECCEE--CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 678899999999999999888 8999998742 222211 1222 2233479999999999999999999999988774
No 48
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.40 E-value=4.4e-12 Score=75.38 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=53.5
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 152 (261)
+.|.|.+.+.|.| .+.|++++.. +.. ..++.... ..|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~--l~~-~~~~~~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKL--ISE-KNRTKKSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEE--CCC-CCEEEcCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999999998 8999998742 222 23333333 479999999999999999999999887776555554
No 49
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=5.4e-12 Score=74.42 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=53.5
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL 153 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~ 153 (261)
+.|.|.+.+.|.| .+.|++++.. +.. ..++. . ...|.|.++..+|+|.|+|.|.|..|.......+.+.|
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~--l~~-~~~~~-~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v 70 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQL--IVL-NHTFK-R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV 70 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEE--CCC-CCEEc-c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence 3689999999999 8999998743 221 12221 1 23699999999999999999999999877766666643
No 50
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.39 E-value=7.7e-12 Score=75.26 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=53.7
Q ss_pred cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
.+.|.|.+.+.|.| .+.|++++.... ......+........|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLK-LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcC-CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 36899999999999 899999874321 111122233445678999999999999999999999998777433
No 51
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.39 E-value=6.7e-12 Score=75.25 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=54.7
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
|+.+.|.|.+.+.|.| .+.|++++.. +. ...++..... ..|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~--~~-~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTEL--LT-NSSRICIWPD-GSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEE--cc-cCCCEEECCC-CeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 6789999999999888 8999998742 21 2223333222 369999999999999999999999988875444
No 52
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.39 E-value=1.1e-11 Score=78.78 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=59.2
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--cCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--VGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV 144 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 144 (261)
..+.+|+.+.|.|.+.+.|.| .+.|++++...... ....++.. ....+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 567799999999999999888 89999976321110 01122322 23346899999999999999999999999887
Q ss_pred eeEEE
Q psy11549 145 TPCLY 149 (261)
Q Consensus 145 ~~~~~ 149 (261)
.+..+
T Consensus 90 ~s~~l 94 (96)
T cd05732 90 QSMYL 94 (96)
T ss_pred EEEEE
Confidence 65443
No 53
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.39 E-value=8.9e-12 Score=77.02 Aligned_cols=75 Identities=24% Similarity=0.413 Sum_probs=59.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
..+..|+.+.|.|.+.+.|.| .+.|++++. .+. ...++.... ..|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 9 ~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~--~~~-~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 9 TEADIGSSLRWECKASGNPRP-AYRWLKNGQ--PLA-SENRIEVEA--GDLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred cEEcCCCcEEEEEEeeEeCCC-EEEEEECCE--ECC-CCCeEEEeC--CEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 567799999999999999988 899999874 222 222333333 36999999999999999999999998777544
Q ss_pred E
Q psy11549 149 Y 149 (261)
Q Consensus 149 ~ 149 (261)
+
T Consensus 83 l 83 (85)
T cd05728 83 L 83 (85)
T ss_pred E
Confidence 4
No 54
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.38 E-value=1.1e-11 Score=73.72 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=51.7
Q ss_pred cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
.+.|.|.+.+.|.| .+.|++++.. +. ...++..... ..|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~--~~-~~~~~~~~~~-~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDM--VI-PSDYFKIVKE-HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeE--CC-CCCCEEEEec-CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 47899999999998 8999998742 21 1222222111 2478889999999999999999999988755443
No 55
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=9.5e-12 Score=76.99 Aligned_cols=81 Identities=21% Similarity=0.447 Sum_probs=55.6
Q ss_pred CcEEEEEEEeeCCCC-ceeEEEEcCCccccccCCceE---EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 75 ESVDIHCAVEADPPA-RSFKWKFNNSGETLDVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 75 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
+.+.|.|.+.+.|.| ..+.|++++..........++ ........|.|.++...|+|.|+|.|.|..|....+..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~-- 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD-- 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE--
Confidence 468999999998875 357999987432221111111 11223457999999999999999999999988777544
Q ss_pred EEeCCCC
Q psy11549 151 VVLAGKP 157 (261)
Q Consensus 151 v~~~~~p 157 (261)
+.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 4444444
No 56
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.35 E-value=2.6e-11 Score=75.83 Aligned_cols=77 Identities=26% Similarity=0.435 Sum_probs=57.2
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCcccc-----ccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETL-----DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
|+.+.|.|.+.+.|.| .+.|++++..... .....++..... ..|.|.++..+|+|.|+|.+.|..|.......
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQT-GDLTITNVQRSDVGYYICQTLNVAGSILTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCC-CeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence 6789999999999988 8999997643211 012334444322 36999999999999999999999998877555
Q ss_pred EEEE
Q psy11549 149 YQVV 152 (261)
Q Consensus 149 ~~v~ 152 (261)
+.|.
T Consensus 79 l~V~ 82 (90)
T cd05726 79 LEVT 82 (90)
T ss_pred EEEe
Confidence 5444
No 57
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=1.5e-11 Score=73.14 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=51.2
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
+.|.|.+.+.|.| .+.|++++.. +..... ........|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~--~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGP--LSPNRT--KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcC--CCCCce--eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 4689999999999 8999998742 211111 222233479999999999999999999999987774443
No 58
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.34 E-value=1.7e-11 Score=72.39 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=51.5
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 151 (261)
+.|.|.+.|.|+| ++.|++++. .+......+...+ ..|.|.++..+|+|.|+|.|.+..........+++
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~--~l~~~~~~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGL--PAAEKCSRYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCE--ECCCCCcEEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 3689999999999 899999874 2222223444443 37999999999999999999998665555444444
No 59
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.34 E-value=2.9e-11 Score=77.47 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=54.7
Q ss_pred ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---cCCceEEe-CCceeEEEEe--cCCCCcCeEE
Q psy11549 59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---VGSERFSS-GSRGSMLRYT--PVTELDYGTL 132 (261)
Q Consensus 59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~-~~~~~~l~i~--~~~~~d~g~y 132 (261)
|.+...+.. ..+..|+.+.|.|.+.+.|.| .+.|++++...... ........ .+....+.+. .+..+|+|.|
T Consensus 2 P~i~~~p~~-~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 2 PRIVEHPSD-LIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CeEEecCce-eEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 444444433 678899999999999999988 89999987432210 01111222 2222222332 2368999999
Q ss_pred EEEEEcCCceEE
Q psy11549 133 SCAAQNAIGTQV 144 (261)
Q Consensus 133 ~C~~~~~~~~~~ 144 (261)
+|.|.|..|...
T Consensus 80 ~C~a~N~~G~~~ 91 (100)
T cd07693 80 VCVAHNSLGEAV 91 (100)
T ss_pred EEEEEcccccee
Confidence 999999999843
No 60
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.34 E-value=2.1e-12 Score=78.78 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=46.9
Q ss_pred CCCCeeccC--CCCceEEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549 1 MAGGIPLAH--NTSARIIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59 (261)
Q Consensus 1 ~~ng~~l~~--~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p 59 (261)
+|||++|.. +..++.+. .++.|.|.+++..|+|.|+|.|.|..+.. +.++.|.|..||
T Consensus 22 ~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L~V~~pP 85 (85)
T cd05853 22 SFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADLIVRGPP 85 (85)
T ss_pred EECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEEEEecCC
Confidence 589999963 23333332 45689999999999999999999999988 788999998776
No 61
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.33 E-value=1.7e-11 Score=73.13 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=51.2
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
+.|.|.+.+.|.| .+.|++++.. +. ..+.........|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~--~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGE--LP--ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeE--CC--CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 4789999999998 8999998642 21 1122222334479999999999999999999999987764443
No 62
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.33 E-value=3e-11 Score=74.32 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=55.7
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
+....|+++.|.|.+.+.|.| .+.|++++.... ... ..........|.|.++..+|+|.|+|.+.|..|....
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~--~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 76 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRP-DITWLKDNKPLT--PTE-IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA 76 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCC-cEEEEECCcCCc--CCc-cceecCceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence 446689999999999999888 799999875321 111 1122233457999999999999999999999987665
No 63
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.32 E-value=1.2e-11 Score=77.30 Aligned_cols=77 Identities=22% Similarity=0.391 Sum_probs=54.7
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCC--ccccccCC-ceE---------EeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNS--GETLDVGS-ERF---------SSGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~~~-~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
|+.+.|.|.+.+.|.| +|.|++++. +..+.... ... ........|.|.++..+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6789999999999998 899998631 11111111 110 0112234799999999999999999999999
Q ss_pred eEEeeEEEEE
Q psy11549 142 TQVTPCLYQV 151 (261)
Q Consensus 142 ~~~~~~~~~v 151 (261)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 8877655554
No 64
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.32 E-value=2.1e-11 Score=72.21 Aligned_cols=67 Identities=25% Similarity=0.440 Sum_probs=50.7
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
++|.|.+.+.|+| .+.|++++.. + ...++... ....|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~--~--~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGE--L--PKGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCcc--C--CCCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 4789999999988 8999998632 2 22223222 22369999999999999999999999987775444
No 65
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.31 E-value=4.5e-11 Score=74.23 Aligned_cols=73 Identities=21% Similarity=0.400 Sum_probs=55.2
Q ss_pred EEeeCCCcEEEEEEE-eeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAV-EADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
..+..|+++.|.|.+ .+.|.| .+.|++++.. +.....++.... ...|.|.++..+|+|.|+|.+.|..|....
T Consensus 6 ~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~--~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 6 TQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQP--LNLDNERVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred EEEeCCCCEEEEEECCCCCCCC-EEEEEECCEE--CCCCCCCEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 567799999999998 577777 8999998743 222233333322 347999999999999999999999887644
No 66
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.31 E-value=3.2e-11 Score=72.95 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=54.7
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 151 (261)
+.|.|.+.+.|.| .+.|++++... ......++........|.|.++..+|.|.|+|.+.|..|.......+.|
T Consensus 1 ~~L~C~v~g~P~p-~v~W~k~~~~l-~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLP-RLTWLKNGMDI-TPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCC-EEEEEECCEEC-CCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 4689999999988 89999987432 1122233444444457999999999999999999999998887555544
No 67
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.31 E-value=2.4e-11 Score=71.87 Aligned_cols=67 Identities=25% Similarity=0.497 Sum_probs=51.1
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
+.|.|.+.+.|.| .+.|++++. .+. ...++.... ...|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~--~~~-~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGV--QVT-ESGKFHISP-EGYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCE--ECC-CCCCEEECC-CCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 4799999999988 799999763 222 223333332 237999999999999999999999998777433
No 68
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.30 E-value=3.4e-11 Score=75.28 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=54.4
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCC--ccccccCC-ceEE---------eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNS--GETLDVGS-ERFS---------SGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~~~-~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
|+.+.|.|.+.+.|.| ++.|++... +..+.... .... .....+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6789999999999998 899998531 11111111 1111 111235799999999999999999999999
Q ss_pred eEEeeEEEEE
Q psy11549 142 TQVTPCLYQV 151 (261)
Q Consensus 142 ~~~~~~~~~v 151 (261)
....++.+.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 8877655543
No 69
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.30 E-value=6.9e-11 Score=75.18 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=60.7
Q ss_pred eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeC------CceeEEEEecCCCC-cCe
Q psy11549 58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG------SRGSMLRYTPVTEL-DYG 130 (261)
Q Consensus 58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~-d~g 130 (261)
+|.+..+. . ..+..|+.+.|.|.+.+.|.|..+.|++++.... .....++... ...+.|.|.++..+ |.|
T Consensus 2 pp~i~~~~-~-~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~-~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G 78 (98)
T cd05758 2 PPIITSEA-T-QYAILGDKGRVECFIFSTPPPDRIVWTWKENELE-SGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT 78 (98)
T ss_pred CCeEcCCC-c-EEEeCCCcEEEEEEEcccCCCCEeEEEECCEEcc-CCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence 44444333 2 4578999999999999998885699999874221 1112334322 22357999999994 589
Q ss_pred EEEEEEEcCCceEEee
Q psy11549 131 TLSCAAQNAIGTQVTP 146 (261)
Q Consensus 131 ~y~C~~~~~~~~~~~~ 146 (261)
.|+|.|.|..|.....
T Consensus 79 ~Y~C~A~N~~G~~~~~ 94 (98)
T cd05758 79 SYNCTAWNSFGSGTAI 94 (98)
T ss_pred eEEEEEEcCCCcccEE
Confidence 9999999999987664
No 70
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=4.3e-11 Score=71.97 Aligned_cols=72 Identities=21% Similarity=0.373 Sum_probs=52.7
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
|+.+.|.|.+.+.|.| .+.|++++. ..+. ...++.... ...|.|..+..+|+|.|+|.|.|..|.......+
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~-~~~~-~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDG-KLIS-NSSRTLVYD-NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCC-EEec-CCCeEEEec-CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999998888 899997543 2222 222222222 2369999999999999999999999987664333
No 71
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.29 E-value=1.1e-10 Score=73.39 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=51.8
Q ss_pred CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 145 (261)
.|+.+.|.|.+.+.|.| ++.|++++.... .....++...+. .|.|.++. .+|+|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~-~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVP-TYRWLRNGTEID-TESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCC-EEEEEECCeECc-cCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 57899999999999998 899999874221 112233433332 68888875 69999999999999997754
No 72
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.29 E-value=4.5e-11 Score=74.99 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=57.2
Q ss_pred EEeeCCCcEEEEEEEee-----CCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 69 VGASRSESVDIHCAVEA-----DPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~-----~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
..+.+|+.+.|.|.+.+ .|.+ ++.|++++....... ...++... ...|.|.++..+|+|.|+|.+.|..|.
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 45668999999999998 5666 899999874322211 12333332 247999999999999999999999888
Q ss_pred EEeeEEE
Q psy11549 143 QVTPCLY 149 (261)
Q Consensus 143 ~~~~~~~ 149 (261)
......+
T Consensus 86 ~~~~~~L 92 (94)
T cd05756 86 MKVSISL 92 (94)
T ss_pred EEEEEEE
Confidence 7764443
No 73
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=8.8e-11 Score=73.62 Aligned_cols=67 Identities=25% Similarity=0.456 Sum_probs=51.2
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 145 (261)
|..+.|.|.+.+.|.| ++.|++++.. +.....++...+ ..|.|.++. .+|+|.|.|.|.|..|....
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~--i~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLD--IDLTNDRYSMVG--GNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEE--ccCCCCeEEEEC--CEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 4579999999999998 8999998742 322233444433 368998875 68999999999999987654
No 74
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.28 E-value=9.4e-11 Score=69.11 Aligned_cols=67 Identities=18% Similarity=0.376 Sum_probs=49.7
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
|+++.|.|.+.+.|.| .+.|++++.. +. ...++.. ....|.|.++ .|+|.|+|.|.|..|....++.
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~--l~-~~~~~~~--~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEE--LT-KEDEMPV--GRNVLELTNI--YESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEE--CC-Cccceec--CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence 6789999999999999 8999998742 21 1222222 2236888886 4789999999999998776543
No 75
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.27 E-value=2.1e-10 Score=72.26 Aligned_cols=69 Identities=29% Similarity=0.523 Sum_probs=50.7
Q ss_pred CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 145 (261)
.|+.+.|.|.+.+.|.| .+.|++++..... ....++..... .|.|.++. ..|.|.|.|.|.|..|....
T Consensus 18 ~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~-~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 18 PEEKVTLGCRARASPPA-TYRWKMNGTEIKF-APESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCCeEEEEeEceeCCCC-EEEEEECCEECcc-CCCceEEEECC--eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 35689999999999988 8999998743221 12233433332 58887755 59999999999999997655
No 76
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.27 E-value=1.2e-10 Score=70.80 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=53.7
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
..+..|+.+.|.|.+.+. .+ .+.|++++.. +.. ..++...+. .|.|.++..+|+|.|+|.+.|..|....
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~--l~~-~~~~~~~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~ 73 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQ--LGE-NNRTRITGE--EVQIKDAVPRDSGLYACVTSSPSGSDTT 73 (79)
T ss_pred EEecCCCCEEEEEEecCC-Cc-eEEEeeCCcC--CCC-CceEEEeCC--EEEECCCChhhCEEEEEEEeCCCCcccE
Confidence 456799999999999986 44 7999998742 322 233444333 6999999999999999999998877555
No 77
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.27 E-value=9.3e-11 Score=70.37 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=48.7
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV 144 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 144 (261)
++|.|.+.+.|.| .+.|++++.... .....++.... ...|.|.++..+|+|.|+|.|.|..|...
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~-~~~~~~~~~~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 65 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVD-TTSNGRIKQLR-SGALQIENSEESDQGKYECVATNSAGTRY 65 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECc-cCCCCCEEEcC-CcEEEECCCChhhCEEEEEEEECCCCceE
Confidence 4799999999998 899999874211 11233444332 23699999999999999999999998753
No 78
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.26 E-value=8.6e-11 Score=71.54 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=49.7
Q ss_pred EEEEEEeeCCCCceeEEEEcCCccccccCCce-EEe-------CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 78 DIHCAVEADPPARSFKWKFNNSGETLDVGSER-FSS-------GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
.+.|.+.+.|.| ++.|++++.. +...... ... ......|.|.++...|+|.|+|.|.|..|......
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~--i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 76 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAV--LNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI 76 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEE--CcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence 368999999999 8999998743 2222211 111 12345799999999999999999999999887743
No 79
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.26 E-value=8.9e-11 Score=70.60 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=49.3
Q ss_pred EEEEEEeeCCCCceeEEEEcCCccccccCCce---E-Ee--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 78 DIHCAVEADPPARSFKWKFNNSGETLDVGSER---F-SS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~-~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
.+.|.+.|.|.| +++|++++.. +...... + .. ......|.|.++..+|+|.|+|.|.|..|....+
T Consensus 2 ~i~~~v~G~P~P-ti~W~kng~~--l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 2 CIPFTVKGNPKP-TLQWFHEGAI--LNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred eEEEEEeEeCCC-ceEEEECCEE--CCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 478999999999 8999998842 2222111 0 11 1234579999999999999999999999987774
No 80
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.24 E-value=3.3e-10 Score=71.07 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=59.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe------CCceeEEEEecCCCCc-CeEEEEEEEcCCc
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS------GSRGSMLRYTPVTELD-YGTLSCAAQNAIG 141 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~ 141 (261)
..+.+|+++.|.|.+.+.|+|..+.|..++.. .......+|.+ .+..+.|.|.++...| .|.|.|.|.|.+|
T Consensus 11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~-i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKENV-LESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred EEEeCCCcEEEEEEEccCCCCcEEEEEEcccc-ccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 66789999999999999998878899887642 11122334433 2357799999998877 7899999999999
Q ss_pred eEEee
Q psy11549 142 TQVTP 146 (261)
Q Consensus 142 ~~~~~ 146 (261)
.....
T Consensus 90 ~d~~~ 94 (98)
T cd05898 90 SGTAI 94 (98)
T ss_pred cceEE
Confidence 88764
No 81
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.24 E-value=1.1e-10 Score=71.98 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=53.8
Q ss_pred CCcEEEEEEEeeC--CCCceeEEEEcCCccccccCC--ceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 74 SESVDIHCAVEAD--PPARSFKWKFNNSGETLDVGS--ERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 74 g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~--~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
|+.+.|.|.+.+. |.+ .+.|.+++......... ... ......+.|.|.++..+|+|.|+|.|.|..+....+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 7889999999999 555 89998876432111110 011 0112345899999999999999999999998877755
Q ss_pred EEE
Q psy11549 148 LYQ 150 (261)
Q Consensus 148 ~~~ 150 (261)
.+.
T Consensus 80 ~v~ 82 (84)
T cd05742 80 KVN 82 (84)
T ss_pred EEE
Confidence 554
No 82
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=9.1e-11 Score=71.96 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=52.4
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccc-ccc-CC---ceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGET-LDV-GS---ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-~~~-~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
|+.+.|.|.+.+.|.| .+.|+++..+.. ... .. ..+... ....|.|.++..+|+|.|+|.|.|..|.......
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVT-NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEc-cccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 6789999999999988 899998743211 111 11 111111 2347999999999999999999999998776433
No 83
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.24 E-value=2.3e-10 Score=71.69 Aligned_cols=71 Identities=27% Similarity=0.275 Sum_probs=51.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE-e-CCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS-S-GSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
..+..|+.+.|.|.+.+.| + .+.|++++. ..+........ . ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 10 ~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 10 GEISVGESKFFLCQVIGEP-K-DISWFSPNG-EKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEECCCCeEEEEEEeEeeC-C-eEEEECCCC-CEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 5678999999999999985 4 899997432 22212122221 1 234568999999999999999999998654
No 84
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.24 E-value=1.5e-10 Score=71.15 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=53.3
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
|++++|.|.+.+.|.+ .+.|+++++........ ..... ....+.|.|.++..+|+|.|.|.+.+..+.......+.
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7889999999998777 89999876422111111 01111 22256899999999999999999998765333333555
Q ss_pred EEe
Q psy11549 151 VVL 153 (261)
Q Consensus 151 v~~ 153 (261)
|.|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 554
No 85
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.23 E-value=4.1e-11 Score=71.75 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=42.6
Q ss_pred CCCCeeccCCCCceEEEEC--C--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSN--Q--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~--~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||++|..+..+..+..+ + +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 18 ~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05892 18 KRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV 75 (75)
T ss_pred EECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence 5899999754454444433 2 79999999999999999999999998 55677765
No 86
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.22 E-value=1.3e-10 Score=70.08 Aligned_cols=69 Identities=17% Similarity=0.365 Sum_probs=49.8
Q ss_pred EEEEEEEee-CCCCceeEEEEcCCccccccCCce--EEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 77 VDIHCAVEA-DPPARSFKWKFNNSGETLDVGSER--FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 77 ~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.|.|.+.+ .|.| .+.|++++........... +........|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 368999999 7776 8999998743221111111 2223345689999999999999999999999886653
No 87
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.21 E-value=6.7e-11 Score=71.39 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=47.3
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
..+.+|+.++|.|.+.+.|.+..+.|++++.. +. .....|.|.++ .+|+|.|+|.|.+.
T Consensus 10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~--l~---------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKL--LE---------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEeeCCCCEEEEEeCCCCCCCccEEEEECCEE--ee---------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 56789999999999999876547999998742 21 11236899999 99999999999875
No 88
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.21 E-value=3.7e-10 Score=71.40 Aligned_cols=74 Identities=32% Similarity=0.511 Sum_probs=51.0
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecC-----CCCcCeEEEEEEEcC-Cce
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPV-----TELDYGTLSCAAQNA-IGT 142 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~~~-~~~ 142 (261)
..+..|+++.|.|.+.+.|.| .+.|++++..... ....++..... ..+.|.++ ...|.|.|+|.|.|. .|.
T Consensus 9 ~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~-~~~~~~~~~~~-~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 9 IVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNL-VSDERRQQLPN-GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred eEEcCCCCEEEeeecccCCCC-EEEEEECCeECcc-ccCcceEEccC-CeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 455689999999999999977 8999998743221 11111222111 23556555 588999999999999 887
Q ss_pred EEe
Q psy11549 143 QVT 145 (261)
Q Consensus 143 ~~~ 145 (261)
..+
T Consensus 86 ~~s 88 (95)
T cd05722 86 IVS 88 (95)
T ss_pred EEE
Confidence 643
No 89
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.21 E-value=2.6e-10 Score=68.84 Aligned_cols=68 Identities=22% Similarity=0.415 Sum_probs=47.8
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC----CcCeEEEEEEEcCCceEEee
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE----LDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.|.|.+.|.|.| ++.|++++..... .....+........|.|..+.. .|.|.|+|.|.|..|.....
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~-~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDI-DKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCC-cCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 4789999999998 8999998743211 1223333333334677877764 37899999999999986653
No 90
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.21 E-value=1.5e-10 Score=70.07 Aligned_cols=67 Identities=22% Similarity=0.427 Sum_probs=48.5
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC----CcCeEEEEEEEcCCceEEe
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE----LDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~ 145 (261)
+.|.|.+.+.|.| .+.|++++..... ....++........|.|.++.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~-~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDP-EKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCC-CCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4789999999998 8999998743211 1223344433345788888754 6899999999999997654
No 91
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.20 E-value=5e-10 Score=69.34 Aligned_cols=77 Identities=14% Similarity=0.284 Sum_probs=55.4
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.+..|+.+.|.|.+.+.|.+ .+.|++++....................|.|.++..+|.|.|.|.+.|..|....+
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 456689999999999988877 79999976421111001111122334578999999999999999999998886663
No 92
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.19 E-value=3.6e-10 Score=68.22 Aligned_cols=68 Identities=25% Similarity=0.389 Sum_probs=48.4
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC----CCcCeEEEEEEEcCCceEEee
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT----ELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.|.|.+.|.|.| .+.|++++..... ....++........|.|..+. .+|.|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNV-AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccC-cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4789999999999 8999998742211 123344443334478888764 246999999999999976653
No 93
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.18 E-value=3.3e-10 Score=68.43 Aligned_cols=70 Identities=17% Similarity=0.355 Sum_probs=48.5
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
+.|.|.+.+.+++..+.|++++....... ...++. .....+.|.|.++..+|+|.|+|.+.|..|....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 46899987644433899999875322111 111222 22345689999999999999999999999877664
No 94
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.17 E-value=9.3e-11 Score=70.29 Aligned_cols=54 Identities=30% Similarity=0.379 Sum_probs=42.7
Q ss_pred CCCCeeccCCCCceEEEECC----eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.+|..+..+.....++ +|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 18 ~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05893 18 KKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV 75 (75)
T ss_pred EECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence 58899997554544444443 69999999999999999999999998 56677764
No 95
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.17 E-value=9.9e-11 Score=69.80 Aligned_cols=53 Identities=28% Similarity=0.403 Sum_probs=43.7
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.+|.. +.+..+..+++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 21 ~k~~~~l~~-~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~ 73 (73)
T cd05852 21 SKGTELLVN-NSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLSV 73 (73)
T ss_pred EeCCEeccc-CCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEEC
Confidence 578888754 345666788999999999999999999999999998 55667654
No 96
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.16 E-value=7e-10 Score=67.39 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=51.5
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
+.+..|+.+.|.|.+.|.|.|.+|.|++++.. +.. .. ....+.|.|..+ .|.|.|.|.|.|..|....
T Consensus 8 ~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~--l~~---~~--~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 8 LSVTANTPFNLTCQAVGPPEPVEILWWQGGSP--LGD---PP--APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred eEEcCCCCEEEEEEeeeecCCeEEEEEECCEE--CCC---CC--CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 67889999999999999998856999998742 211 11 122346888876 4789999999999986654
No 97
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.16 E-value=9.6e-11 Score=72.21 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=44.7
Q ss_pred CCCCeeccCCC--CceEE--E--ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549 1 MAGGIPLAHNT--SARII--L--SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59 (261)
Q Consensus 1 ~~ng~~l~~~~--~~~~~--~--~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p 59 (261)
+|||++|..+. .+..+ . ..++|.|.+++..|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L~V~~~P 85 (85)
T cd05854 22 SLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATLVVRGPP 85 (85)
T ss_pred EECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEEEEECCC
Confidence 47898885322 22211 1 34699999999999999999999999988 678899998665
No 98
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.15 E-value=6.4e-11 Score=73.26 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=44.8
Q ss_pred CCCCeeccCCCC--c---e-EEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549 1 MAGGIPLAHNTS--A---R-IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59 (261)
Q Consensus 1 ~~ng~~l~~~~~--~---~-~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p 59 (261)
+|||++|..+.. . . ....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~pP 85 (85)
T cd04970 22 SFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADLIVRGPP 85 (85)
T ss_pred EECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEEEEECCC
Confidence 478998864322 1 1 12245789999999999999999999999887 678899998765
No 99
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.15 E-value=4.9e-10 Score=68.22 Aligned_cols=67 Identities=25% Similarity=0.429 Sum_probs=48.0
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCcccc-c----cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETL-D----VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~-~----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
++|.|.+.+.|.| .+.|++.+..... . ....++.... ...|.|.++..+|+|.|.|.|.|..|....
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEec-CCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 5799999999998 8999986432111 0 0222333222 247999999999999999999999887643
No 100
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.13 E-value=1.4e-09 Score=66.69 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=49.9
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
..+..|+++.|.|.+.+ +.+ ++.|++++.. +.....++..... .|.|.++..+|+|.|+|.+.+.
T Consensus 6 ~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~--i~~~~~r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 6 RTFKLGNNAELKCSPKS-NLA-RVVWKFDGKV--LTPESAKYLLYRD--GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEECCCCEEEEEECCC-CCC-eEEEEECCEE--CCCCCceEEEECC--cEEEeCCCHHHCEEEEEEEEec
Confidence 56789999999999754 445 8999998853 3333344544443 5999999999999999999975
No 101
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.12 E-value=1.3e-09 Score=68.36 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=51.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc-----ccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL-----DVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
+.+..|+++.|.|.+.+.|.+ .+.|++++..... .....++.. ......|.|.++..+|.|.|+|.+..
T Consensus 7 ~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 7 ETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 668899999999999998887 7999987642100 011223321 22346899999999999999999987
No 102
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.12 E-value=2.2e-10 Score=68.77 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=45.9
Q ss_pred CCCCeeccC-CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 1 MAGGIPLAH-NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 1 ~~ng~~l~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
||||.++.. ...+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 18 ~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 18 FKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred EECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 578888863 23455566678999999999999999999999999977788888773
No 103
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.11 E-value=3.7e-10 Score=70.14 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=46.5
Q ss_pred CCCCeeccCCCCceEEEE----C---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549 1 MAGGIPLAHNTSARIILS----N---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~----~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~ 60 (261)
+|||.++..+.+++.+.. + ++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus 21 ~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L~V~~~P~ 86 (88)
T cd05735 21 EKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQLTVQEPPD 86 (88)
T ss_pred eeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEEEEeCCCC
Confidence 478888865444444332 1 479999999999999999999999997 6788999987663
No 104
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.11 E-value=1.5e-09 Score=67.04 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=54.3
Q ss_pred EEeeCCCcEEEEEEEee-CCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 69 VGASRSESVDIHCAVEA-DPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
..+..|++++|.|.+.+ .|.+ .+.|++++.. + .... . .....|.|.++..+|+|.|.|.+.|..|.....+
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~--~--~~~~-~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 11 QEVRPGADVSFICRAKSKSPAY-TLVWTRVGGG--L--PSRA-M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred eEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCc--C--CCcc-c--ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 56789999999999976 4444 8999998743 1 1111 1 1234799999999999999999999998877643
Q ss_pred E
Q psy11549 148 L 148 (261)
Q Consensus 148 ~ 148 (261)
.
T Consensus 83 ~ 83 (85)
T cd05754 83 T 83 (85)
T ss_pred E
Confidence 3
No 105
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.11 E-value=3.8e-10 Score=67.83 Aligned_cols=54 Identities=28% Similarity=0.379 Sum_probs=42.3
Q ss_pred CCCCeeccCCCCceEEEECC----eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||++|..+..+.....++ +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 18 ~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 75 (75)
T cd05744 18 KKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLDV 75 (75)
T ss_pred EECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEeC
Confidence 58999997554444444332 69999999999999999999999987 56677764
No 106
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.11 E-value=1.5e-09 Score=67.72 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=54.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
+.+..|+.+.|.|.+.+ |.+ .+.|++++....... ...++..... .|.|.++..+|+|.|.|.+.+..+.. ...
T Consensus 6 ~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~-~~~ 80 (89)
T cd04979 6 VTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQ-TLA 80 (89)
T ss_pred EEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccce-eEe
Confidence 56779999999999876 555 899999875322211 0123333332 48999999999999999998765432 223
Q ss_pred EEEEEe
Q psy11549 148 LYQVVL 153 (261)
Q Consensus 148 ~~~v~~ 153 (261)
.+.|.|
T Consensus 81 ~~~l~V 86 (89)
T cd04979 81 TYSLNV 86 (89)
T ss_pred EEEEEE
Confidence 555554
No 107
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.11 E-value=3.5e-10 Score=71.67 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=46.7
Q ss_pred CCCCeeccCCCCceEEE---ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549 1 MAGGIPLAHNTSARIIL---SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~ 60 (261)
+|||++|..+.+ ..+. ..+.|.|.++..+|+|.|+|.|.|..|.. ..++.|.|..+|.
T Consensus 35 ~kdg~~l~~~~~-~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~~~~~l~V~~~P~ 95 (98)
T cd05762 35 MKFRKQIQEGEG-IKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSR-QAQVNLTVVDKPD 95 (98)
T ss_pred EECCEEecCCCc-EEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCce-eEEEEEEEecCCC
Confidence 589999974433 3332 24589999999999999999999999998 6689999987763
No 108
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.10 E-value=2.7e-09 Score=66.81 Aligned_cols=69 Identities=25% Similarity=0.505 Sum_probs=50.3
Q ss_pred CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 145 (261)
.|..+.|.|.+.+.|.| ++.|++++.... .....++..... .|.|.++. .+|+|.|+|.|.|..|....
T Consensus 18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~-~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPP-TYRWLMNGTEID-DEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCC-EEEEEECCEECC-CCCCCCEEEECC--EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 45679999999999888 899999874221 112333433332 68888876 48999999999999987654
No 109
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.09 E-value=3.1e-10 Score=72.07 Aligned_cols=54 Identities=24% Similarity=0.304 Sum_probs=42.9
Q ss_pred CCCCeeccCCCCceEEE-E-------CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 1 MAGGIPLAHNTSARIIL-S-------NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~-~-------~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
+|||++|..+.. ..+. . .++|.|.++..+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus 39 ~Kdg~~i~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~-~~t~~L~V~ 100 (101)
T cd04975 39 TYDNRTLTNKLT-EIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK-SLTFELYVN 100 (101)
T ss_pred EeCCeeCCCCcc-eeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE-EEEEEEEEE
Confidence 689999974333 3332 2 3689999999999999999999999987 677888775
No 110
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.09 E-value=3.3e-10 Score=67.31 Aligned_cols=52 Identities=21% Similarity=0.384 Sum_probs=41.4
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||||++|..+ .+....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.+.|
T Consensus 18 ~k~g~~l~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 18 YKNGKLISEK--NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred EECCEECCCC--CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 5899999644 3556677899999999999999999999998875 44455544
No 111
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.08 E-value=1.4e-09 Score=67.86 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=54.3
Q ss_pred EEeeCCCcEEEEEEEeeC-----CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549 69 VGASRSESVDIHCAVEAD-----PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ 143 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 143 (261)
..+..|.++.|.|...+. |.| .+.|++++. .+......+. ....|.|.++..+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~--~i~~~~~~~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCK--LLEGDRKRFV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCC-cEEEeECCE--ECCCCccEEe---cCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 557789999999987542 345 899999884 2322222222 33479999999999999999999987776
Q ss_pred EeeEEEE
Q psy11549 144 VTPCLYQ 150 (261)
Q Consensus 144 ~~~~~~~ 150 (261)
.......
T Consensus 79 ~~~~t~t 85 (92)
T cd05757 79 QYNVTRT 85 (92)
T ss_pred EEEEEEE
Confidence 5543333
No 112
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.08 E-value=3.3e-10 Score=68.05 Aligned_cols=53 Identities=28% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++..+ .+.....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 22 ~k~g~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V 74 (74)
T cd05745 22 TKGGSQLSVD-RRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLTV 74 (74)
T ss_pred EECCEECCCC-CCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEeC
Confidence 4789988643 34556677899999999999999999999999987 55666654
No 113
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.07 E-value=6.8e-10 Score=67.02 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=43.6
Q ss_pred CCCCeeccCCC-CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNT-SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++.... ..+....+++|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 21 ~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 21 SINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred EECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 57999886432 23455677899999999999999999999999987 55677776
No 114
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.07 E-value=4.4e-10 Score=69.73 Aligned_cols=55 Identities=31% Similarity=0.517 Sum_probs=45.5
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||+++.....+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 32 ~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 32 RKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 4789988765555666667899999999999999999999999987677777654
No 115
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.06 E-value=1.2e-09 Score=67.00 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV 144 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 144 (261)
.+.+|++++|.|.+....+...+.|++++.... . ......|.|.++..+|+|.|+|.+.+..+...
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~--~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK--Y-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcc--c-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 477999999999986544444899999874221 1 11234799999999999999999999877544
No 116
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.06 E-value=3.3e-10 Score=65.99 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=38.1
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||||++|... ..++.|.|.++..+|+|.|+|.|.|..|.. +.++.|+|
T Consensus 18 ~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 18 YKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred EECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence 5899999521 235699999999999999999999999976 45555555
No 117
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.06 E-value=7.2e-10 Score=65.89 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=42.6
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++.... +..+..++.|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 19 ~k~g~~~~~~~-~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V 71 (71)
T cd05723 19 VKNGDMVIPSD-YFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII 71 (71)
T ss_pred EECCeECCCCC-CEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence 57888886543 3455567889999999999999999999999997 56666654
No 118
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.05 E-value=5.7e-10 Score=69.65 Aligned_cols=54 Identities=28% Similarity=0.451 Sum_probs=42.8
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++... .......+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 37 ~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 37 VNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 5788888532 22222344699999999999999999999999998788888877
No 119
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.05 E-value=4.3e-09 Score=66.27 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=51.2
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccc-----cccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGET-----LDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
+.+.+|+++.|.|.+.+.|.+ .+.|++.+.... ......++.. ......|.|.++..+|+|.|+|.+.+.
T Consensus 7 v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 7 VTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred EEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 678899999999999998877 799986432100 0112334432 234468999999999999999999974
No 120
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.05 E-value=9.4e-10 Score=68.44 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=52.9
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
..+.+|+.+.|.|......++..+.|++++....+.....++ .......|.|.++..+|+|.|+|.|.|....
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~-~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF-VSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE-EeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 567789999999977655444489999987432222233333 3333447999999999999999999997544
No 121
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.05 E-value=9.4e-10 Score=66.96 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=38.8
Q ss_pred CCCCeeccCCCCceEEEE---------CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARIILS---------NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
||||++|..+........ .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus 18 ~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 78 (81)
T cd04971 18 YHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISA 78 (81)
T ss_pred EECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEe
Confidence 689999975543222211 3479999999999999999999999997 444433
No 122
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.05 E-value=2.1e-09 Score=62.61 Aligned_cols=62 Identities=29% Similarity=0.467 Sum_probs=41.6
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCc-e-eEEEEecCCCCcCeEEEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR-G-SMLRYTPVTELDYGTLSCAA 136 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~-~~l~i~~~~~~d~g~y~C~~ 136 (261)
|+.++|.|.+...+++..+.|++++......... ....... . ..|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT-NRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE-EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCccee-EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999444444499999988543221111 1111111 1 13999999999999999986
No 123
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.03 E-value=2.9e-09 Score=66.41 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=51.4
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc----c-------CCceE--E---eCCceeEEEEecCCCCcCeEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD----V-------GSERF--S---SGSRGSMLRYTPVTELDYGTL 132 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~-------~~~~~--~---~~~~~~~l~i~~~~~~d~g~y 132 (261)
+.+..|++++|+|.+.+.+.+ .+.|++.+...... + ...++ . .......|+|.++..+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 456789999999999987776 89998654211100 0 01111 1 133456799999999999999
Q ss_pred EEEEEcCCceE
Q psy11549 133 SCAAQNAIGTQ 143 (261)
Q Consensus 133 ~C~~~~~~~~~ 143 (261)
+|.+.+..+..
T Consensus 81 ~C~v~~~~~~~ 91 (94)
T cd07690 81 ICEVEDKKEEV 91 (94)
T ss_pred EEEECCccceE
Confidence 99999876543
No 124
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.03 E-value=6.9e-10 Score=65.41 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=38.6
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLR 54 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~ 54 (261)
||||++|..+ .....+..|.|.++..+|+|.|+|.|.|..|.. ...++.|.
T Consensus 18 ~k~g~~l~~~---~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 18 YKNGQLIVLN---HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EECCEECCCC---CEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 5899999643 223456689999999999999999999999875 23344443
No 125
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.02 E-value=7.1e-09 Score=63.99 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=52.7
Q ss_pred CCcEEEEEEEeeCCC-CceeEEEEcCCcccc--ccCCceE---EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549 74 SESVDIHCAVEADPP-ARSFKWKFNNSGETL--DVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147 (261)
Q Consensus 74 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~--~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 147 (261)
|+++.|.|.+.+.+. ...+.|.++++.... .....+. ......+.|.|.++..+|+|.|+|.|.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 788999999987653 347899877642211 0111011 1122356899999999999999999999887766654
Q ss_pred EEEE
Q psy11549 148 LYQV 151 (261)
Q Consensus 148 ~~~v 151 (261)
.+.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 4443
No 126
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.01 E-value=1.6e-09 Score=68.16 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=39.0
Q ss_pred CCeeccCCCCceEEEEC----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 3 GGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 3 ng~~l~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||++|...+.+.....+ ++|.|.+++.+|+|.|+|.|.|..+...+.++.|.|
T Consensus 39 ~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 39 NGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 78777543444333332 589999999999999999999997443367777766
No 127
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.01 E-value=1.1e-09 Score=66.57 Aligned_cols=51 Identities=16% Similarity=0.436 Sum_probs=39.9
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR 54 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~ 54 (261)
+|||++|..+. +....+.+|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus 28 ~k~g~~l~~~~--~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v~ 78 (79)
T cd04973 28 TKDGVQLGENN--RTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSVN 78 (79)
T ss_pred eeCCcCCCCCc--eEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEEe
Confidence 58999996433 344567799999999999999999999988775 4445444
No 128
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.01 E-value=1.4e-09 Score=65.47 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCCCeeccCCCCceE--E-E----ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARI--I-L----SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~--~-~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
||||++|..+..... . . ..++|.|.+++.+|+|.|+|.|.|..|.. ++++.+
T Consensus 18 ~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 76 (79)
T cd05855 18 FHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA 76 (79)
T ss_pred EECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence 689999975433211 1 1 12489999999999999999999999987 555544
No 129
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.99 E-value=1.2e-09 Score=69.57 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=42.1
Q ss_pred CCCCeeccCCCCceEEE---------ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 1 MAGGIPLAHNTSARIIL---------SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
||||++|..+.. .... ..++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus 38 ~kdg~~l~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~-~~t~~l~V~ 100 (101)
T cd05859 38 LKDNRTLIENLT-EITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK-SYTFALQIQ 100 (101)
T ss_pred EECCEECcCCcc-eEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE-EEEEEEEEE
Confidence 689999974432 2221 13589999999999999999999999887 667777774
No 130
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.99 E-value=1.1e-09 Score=65.50 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=42.1
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++..+. +.....+++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 21 ~k~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 73 (73)
T cd04969 21 SKGTELLTNSS-RICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLSV 73 (73)
T ss_pred EECCEEcccCC-CEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEEC
Confidence 47888886443 3455567899999999999999999999999987 55666654
No 131
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.99 E-value=1.9e-09 Score=64.72 Aligned_cols=54 Identities=28% Similarity=0.465 Sum_probs=40.6
Q ss_pred CCCCeeccCCCCceEEEE--CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILS--NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.+|..+........ ..+|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 19 ~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 74 (74)
T cd05748 19 SKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV 74 (74)
T ss_pred EECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence 588999854433222222 3489999999999999999999999987 66666654
No 132
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.98 E-value=1.8e-08 Score=62.77 Aligned_cols=73 Identities=25% Similarity=0.420 Sum_probs=49.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEc-CCceEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN-AIGTQV 144 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~ 144 (261)
+.+.+|+++.|.|.. ..|.| .+.|++...+.... . ...++.... ..|.|.++..+|+|.|+|.+.+ ..+...
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~ 81 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQTL 81 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEec--CeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence 567799999999996 45656 89999854322211 1 123333333 3599999999999999999985 444344
Q ss_pred e
Q psy11549 145 T 145 (261)
Q Consensus 145 ~ 145 (261)
.
T Consensus 82 ~ 82 (91)
T cd05871 82 A 82 (91)
T ss_pred E
Confidence 3
No 133
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.98 E-value=4.3e-09 Score=60.85 Aligned_cols=63 Identities=30% Similarity=0.531 Sum_probs=46.9
Q ss_pred CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
.|+.+.|.|.+.+.+.+ .+.|++++.. +. ...........|.|.++...|+|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~--~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKP--LP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEE--CC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47889999998777777 8999997642 22 1212223344799999999999999999988653
No 134
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.98 E-value=1.4e-09 Score=64.24 Aligned_cols=51 Identities=27% Similarity=0.381 Sum_probs=40.4
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
+|||.++..+ .+..+..+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus 18 ~k~g~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 18 NKDGVQVTES-GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred EECCEECCCC-CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence 4788888643 33445567899999999999999999999999987 555554
No 135
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.98 E-value=1.8e-09 Score=63.82 Aligned_cols=52 Identities=27% Similarity=0.391 Sum_probs=40.5
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+||+..+. ..+.....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 18 ~k~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 69 (69)
T cd05725 18 RKEDGELP--KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV 69 (69)
T ss_pred EECCccCC--CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence 36666664 234555577899999999999999999999999987 55666654
No 136
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.97 E-value=1.5e-09 Score=64.10 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=38.2
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l 53 (261)
+|||.+|..+.. .....+.+|.|.+++.+|+|.|+|.|.|.... .....+.|
T Consensus 18 ~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 18 LKDGLPAAEKCS-RYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred EECCEECCCCCc-EEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 589999975433 34455679999999999999999999998443 33334444
No 137
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.97 E-value=1.7e-09 Score=64.29 Aligned_cols=53 Identities=28% Similarity=0.441 Sum_probs=41.5
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++..+ .......+++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 18 ~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 18 DRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred EECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 4777777543 22334456799999999999999999999999987 66677776
No 138
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.96 E-value=2.3e-09 Score=66.17 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=41.4
Q ss_pred CCCCeeccCCCCceEEEE---CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||+++...+.+..+.. .++|.|.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 30 ~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V 86 (86)
T cd05894 30 SRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASLFVKV 86 (86)
T ss_pred EECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEEEEEC
Confidence 588999975443333332 2589999999999999999999999987 56666654
No 139
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.96 E-value=2.5e-09 Score=64.61 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=43.1
Q ss_pred CCCCeeccCCCC-ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTS-ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||+++..... ......++.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 21 ~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 21 RLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred EECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 478888864432 2455567899999999999999999999999987 56677776
No 140
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.96 E-value=1.3e-08 Score=62.82 Aligned_cols=82 Identities=23% Similarity=0.329 Sum_probs=63.9
Q ss_pred CCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccc-eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549 159 PPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLN-LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK 236 (261)
Q Consensus 159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~ 236 (261)
+|.++.+.......+.|.|..+...+.+ ..|.+.++...... ............++|.+ |.++..|.|++.|.|..
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITG--LQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEES--CCTTSEEEEEEEEEETT
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeecc--CCCCCEEEEEEEEEeCC
Confidence 5677888888999999999975434444 45999988766664 22333444456899999 99999999999999999
Q ss_pred CcCCce
Q psy11549 237 GRSLPV 242 (261)
Q Consensus 237 G~~~~s 242 (261)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 988765
No 141
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.95 E-value=3.7e-09 Score=63.91 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=41.1
Q ss_pred CCCCeeccCCCCceEE-EECCeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V 55 (261)
||||.+|..+..+... ..+++|.|.+++.+|+|.|+|.|.|..|... +..+.|.|
T Consensus 18 ~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 18 FRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred EECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5899999754433333 2346899999999999999999999999863 34555555
No 142
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.95 E-value=2.9e-09 Score=64.19 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=42.7
Q ss_pred CCCCeeccCCC-CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNT-SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||+++.... .......++.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 21 ~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 21 LTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred EECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 47999986332 22334556799999999999999999999999998 66677776
No 143
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.94 E-value=4.9e-09 Score=65.98 Aligned_cols=54 Identities=30% Similarity=0.496 Sum_probs=42.8
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKLR 54 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l~ 54 (261)
+|||++|......+....+++|.|.++. .+|+|.|+|.|.|..|...++.+.|.
T Consensus 39 ~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 39 KMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred EECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 5799999754444555677899998865 59999999999999999877766653
No 144
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.94 E-value=2.4e-08 Score=63.06 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=50.5
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc-----ccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL-----DVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
+.+.+|++++|.|.+.+.+.+ .+.|++.+..... .....++.. ......|.|.++..+|+|.|+|.+....
T Consensus 7 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 7 VTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 667899999999999887666 8999864321110 012234433 2234579999999999999999999764
No 145
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.94 E-value=3.4e-09 Score=66.54 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=40.5
Q ss_pred CCCCeeccCCCCceEEEE-C--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILS-N--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~-~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||+++..++...+... + .+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 36 ~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v 92 (92)
T cd05737 36 LKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TVDVTVSV 92 (92)
T ss_pred EECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eEEEEEeC
Confidence 589999975444333333 2 379999999999999999999999987 55555543
No 146
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.94 E-value=3.7e-09 Score=66.51 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=42.0
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
||||.+|......+....+++|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus 39 ~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 39 LRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred EECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 5899999644443555677899999985 6999999999999999886666554
No 147
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.94 E-value=4.8e-09 Score=65.41 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=36.3
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA 46 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 46 (261)
||||++|..+. .....++.|.|.+++.+|+|.|+|.+.|..+..
T Consensus 35 yk~~~~i~~~~--~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 35 YKDCKLLEGDR--KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eECCEECCCCc--cEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 68999997433 223378899999999999999999999987765
No 148
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.89 E-value=1.1e-07 Score=59.37 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=60.1
Q ss_pred EEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
.+.+.+|+++.|.|.+.+.|+|..+.|.+.+....- .....+.... -.+.|.+..+..+|+|.|+|.|.|....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~-~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTN-TSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCc-cccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 377899999999999999999956999987542111 1111122211 3468999999999999999999998877
Q ss_pred EEeeEEEEEE
Q psy11549 143 QVTPCLYQVV 152 (261)
Q Consensus 143 ~~~~~~~~v~ 152 (261)
... .|.+.
T Consensus 91 ~s~--tF~l~ 98 (101)
T cd05860 91 ASV--TFNVY 98 (101)
T ss_pred EEE--EEEEE
Confidence 766 44444
No 149
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.89 E-value=7.5e-09 Score=64.53 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=40.8
Q ss_pred CCeeccCCCCceEEEECC---eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 3 GGIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 3 ng~~l~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||.++..+ .+.....++ +|.|.++..+|+|.|+|.|.|..|....+++.|.|
T Consensus 37 ~g~~~~~~-~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 37 QGEKIVSS-QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred CCeEecCC-CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 67777543 345544454 89999999999999999999999987677777765
No 150
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.88 E-value=1.5e-08 Score=63.00 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=53.8
Q ss_pred EEEeeCCCcEEEEEE-EeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCe-EEEEEEEcCCce
Q psy11549 68 IVGASRSESVDIHCA-VEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG-TLSCAAQNAIGT 142 (261)
Q Consensus 68 ~~~~~~g~~~~l~C~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~ 142 (261)
.+.+.+|+.+.|.|. ..+.|.| .+.|+.++. ..+. ...++..... ..|.|.++..+|+| .|.|.|.+....
T Consensus 12 ~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~-~~i~-~~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 12 PVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDL-LHIT-QDERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred eeEEecCCCEEEEecCCCCCCCC-EEEEECCCC-cccc-ccccEEECCC-ceEEEEEEehhhCCCCeEEEEEccccc
Confidence 377889999999997 5777777 899996553 2232 3455555443 47999999999999 899999987543
No 151
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.88 E-value=4.5e-09 Score=65.96 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=40.5
Q ss_pred CCCCeeccC--CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAH--NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||||.++.. ....+....++.|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus 39 yk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~-~~~~~L~v 94 (94)
T cd05756 39 YKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM-KVSISLTV 94 (94)
T ss_pred EEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE-EEEEEEEC
Confidence 577876542 1233445567899999999999999999999998886 55566654
No 152
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.86 E-value=7.2e-09 Score=63.96 Aligned_cols=52 Identities=33% Similarity=0.521 Sum_probs=41.9
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++... .+....++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 34 ~k~g~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 85 (85)
T cd05728 34 LKNGQPLASE--NRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELAV 85 (85)
T ss_pred EECCEECCCC--CeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEEC
Confidence 5889988643 2455678899999999999999999999999987 55666654
No 153
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.86 E-value=5.7e-09 Score=62.12 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=39.6
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+||+.++... .......+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 18 ~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 18 IKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred EECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 3677776432 22223345699999999999999999999999986 66677766
No 154
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.86 E-value=1.2e-08 Score=63.60 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=39.9
Q ss_pred CCCCeeccCCCCceEEEE-CCeEEEccCCCCCCEeEEEEEEeCCCcc---eeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILS-NQSLVLQKVSRQSAGTYKCSAINTKGEA---TSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~~~~~~~~~---~s~~~~l~V 55 (261)
|||+++|..++.+..... +..|.|.++..+|+|.|+|.+.+..+.. .++.+.|.|
T Consensus 35 YKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 35 YKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRI 93 (95)
T ss_pred ccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence 699999975544444433 4689999999999999999999986553 234444443
No 155
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.85 E-value=4.4e-09 Score=64.55 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=40.0
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++...........+.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 29 ~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v 82 (82)
T cd05856 29 LKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV 82 (82)
T ss_pred EECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence 4788887644333333334689999999999999999999999986 55566553
No 156
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.84 E-value=1.6e-08 Score=63.35 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=42.0
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKLR 54 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l~ 54 (261)
+|||.++..... +....++.|.|.++. .+|+|.|+|.|.|..|...++.+.|.
T Consensus 39 ~k~~~~i~~~~~-~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 39 RKNNLDIDLTND-RYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred EECCEEccCCCC-eEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 578888864334 445678899999985 69999999999999999877766653
No 157
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.84 E-value=1.1e-08 Score=64.16 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=37.6
Q ss_pred CCeeccCCCCceEEEEC----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 3 GGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 3 ng~~l~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||.++....+ .....+ .+|+|.+++.+|+|.|+|.|.|..|.....++.|.|
T Consensus 37 ~~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 37 NGEKLVTQQQ-ISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred CCCEeccCCC-EEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 6766654333 333333 389999999999999999999997765566676654
No 158
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.84 E-value=8.9e-09 Score=63.65 Aligned_cols=54 Identities=20% Similarity=0.398 Sum_probs=40.4
Q ss_pred CCCCeeccCCCCc---eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSA---RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||||+++..+... .....+.+|.|.+++.+|+|.|+|.|.|..|.. ..++.|.|
T Consensus 29 ~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 85 (85)
T cd05857 29 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDV 85 (85)
T ss_pred EECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEEEEC
Confidence 5889998643321 112234589999999999999999999999987 56676654
No 159
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.83 E-value=3.9e-08 Score=61.02 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=52.1
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF 247 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~ 247 (261)
..|+.+.|.|.+ .|.|.+...|++............ .....|.|.+++.+|.|.| +|.|.|.+|....+..+.+
T Consensus 14 ~~G~~v~l~C~~---~G~P~P~v~W~k~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 14 LKGQNVTLECFA---LGNPVPVIRWRKILEPMPATAEIS-MSGAVLKIFNIQPEDEGTY--ECEAENIKGKDKHQARVYV 87 (88)
T ss_pred eCCCcEEEEEEe---cccCCCEEEEEECCcCCCCCCEEe-cCCCEEEECcCChhhCEEE--EEEEEcCCCceEEEEEEEE
Confidence 459999999997 455644445555433222121222 2346899999999999999 9999999999887776655
No 160
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.83 E-value=1.2e-08 Score=61.31 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=32.6
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 38 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 38 EDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 45699999999999999999999999986 66677776
No 161
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.83 E-value=5e-08 Score=61.05 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=50.8
Q ss_pred EEeeCCCcEEEEEEEe----------eCCCCceeEEEEcCCccccccC----CceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549 69 VGASRSESVDIHCAVE----------ADPPARSFKWKFNNSGETLDVG----SERFSSGSRGSMLRYTPVTELDYGTLSC 134 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~----------~~~~~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C 134 (261)
..+.+|+++.|.|..- +.....++.|++++.....+.. ..++...+. .|.|.++..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence 5577999999999861 1222337999998633222221 123333443 79999999999999999
Q ss_pred EEEcCCceEEe
Q psy11549 135 AAQNAIGTQVT 145 (261)
Q Consensus 135 ~~~~~~~~~~~ 145 (261)
.+.|...-...
T Consensus 88 ~~rN~t~C~~~ 98 (104)
T cd05896 88 VLRNSTYCMKV 98 (104)
T ss_pred EECCCCcceEE
Confidence 99997644333
No 162
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.82 E-value=4.5e-08 Score=61.00 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=50.3
Q ss_pred EEeeCCCcEEEEEEE-ee----CCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549 69 VGASRSESVDIHCAV-EA----DPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ 143 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~-~~----~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 143 (261)
..+..|.+..|.|.- .+ .+.+ .+.||+++. .+.....++........|.|.++..+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~--~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSV--LLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCE--ECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 345678899999963 22 2334 899999884 333333344332233469999999999999999999986554
No 163
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.82 E-value=2.9e-08 Score=59.86 Aligned_cols=55 Identities=24% Similarity=0.424 Sum_probs=42.6
Q ss_pred CCCCeeccCCCC-ceEEEEC-CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 1 MAGGIPLAHNTS-ARIILSN-QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 1 ~~ng~~l~~~~~-~~~~~~~-~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
+|||++|..+.. +.....+ .+|.|.+++.+|.|.|+|.+.|..|.. ..++.|.|.
T Consensus 18 ~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 18 LKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred EECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 578888865433 2333344 479999999999999999999999987 667888774
No 164
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.81 E-value=1.3e-08 Score=61.04 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=40.1
Q ss_pred CCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 3 ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||..+.. ..+.....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 24 ~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 74 (74)
T cd05764 24 DGKLISN-SSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI 74 (74)
T ss_pred CCEEecC-CCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence 6666653 344556678899999999999999999999999986 66666654
No 165
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.81 E-value=1.5e-08 Score=65.56 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=44.5
Q ss_pred CCCCeeccCCCCceEEE-------ECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549 1 MAGGIPLAHNTSARIIL-------SNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~-------~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p 59 (261)
+|||.+|...+.++... .+++|.|.++. .+|.|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 43 ~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p 108 (109)
T cd05773 43 AKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDIQLVSTSRP 108 (109)
T ss_pred EECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence 58999986444333211 13589999997 599999999999999997 777888887665
No 166
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.80 E-value=1.6e-08 Score=63.83 Aligned_cols=55 Identities=31% Similarity=0.465 Sum_probs=43.8
Q ss_pred CCCCeeccCCCC-ceEEEECCeEEEccC-----CCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTS-ARIILSNQSLVLQKV-----SRQSAGTYKCSAINT-KGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~-----~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V 55 (261)
+|||++|..... +.....+++|.|.++ +.+|+|.|+|.|.|. .|...++.+.|.|
T Consensus 34 ~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 34 KKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 589999964332 355567788998887 689999999999999 9998788787765
No 167
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.79 E-value=2.1e-08 Score=62.79 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCCCeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR 54 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~ 54 (261)
||||+++..+........+ .+|.|.+++.+|+|.|+|.|.|..|.. ..++.|.
T Consensus 36 ~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~ 91 (92)
T cd05891 36 FKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TVDVTVS 91 (92)
T ss_pred EECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-eeEEEEE
Confidence 5788888654332232333 289999999999999999999999987 4445544
No 168
>smart00409 IG Immunoglobulin.
Probab=98.79 E-value=3.5e-07 Score=56.18 Aligned_cols=74 Identities=36% Similarity=0.593 Sum_probs=53.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
+.+..|+++.|.|.+.+.+.+ .+.|++++ +..+. ...++ ........|.|.++...|.|.|.|.+.+..+....
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~-~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQG-GKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCC-eEEEEECC-CEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 456789999999999988555 89999872 12221 12222 22222468999999999999999999987666544
No 169
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.79 E-value=3.5e-07 Score=56.18 Aligned_cols=74 Identities=36% Similarity=0.593 Sum_probs=53.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
+.+..|+++.|.|.+.+.+.+ .+.|++++ +..+. ...++ ........|.|.++...|.|.|.|.+.+..+....
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~-~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQG-GKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCC-eEEEEECC-CEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 456789999999999988555 89999872 12221 12222 22222468999999999999999999987666544
No 170
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.79 E-value=2.3e-08 Score=60.42 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=39.5
Q ss_pred CCCCeeccCCCCceEE--EECCeEEEccCCC----CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARII--LSNQSLVLQKVSR----QSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~--~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
+|||.+|......++. ..+++|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 18 ~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 18 TRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred EECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 5899998643322333 3468999999864 799999999999999886766554
No 171
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.78 E-value=2.5e-08 Score=60.15 Aligned_cols=53 Identities=23% Similarity=0.470 Sum_probs=38.6
Q ss_pred CCCCeeccCCCCceEE--EECCeEEEccCCC----CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARII--LSNQSLVLQKVSR----QSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~--~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
+|||.+|......... ..+++|.|..+.. .|.|.|+|.|.|..|...++.+.|
T Consensus 18 ~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 18 TRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred EECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 5889988533332232 3468999988875 378999999999999986665554
No 172
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.78 E-value=1.2e-07 Score=57.66 Aligned_cols=70 Identities=27% Similarity=0.490 Sum_probs=49.5
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
.+..|+.+.|.|.+.+.|.+ .+.|++++. .+.. ... .+.+..+..+|.|.|+|.+.+..+. ..+..+
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~--~~~~-------~~~--~~~~~~~~~~~~g~y~C~~~~~~~~-~~s~~~ 76 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPP-QVQWYKNGS--PINS-------SQN--GLFIPNVSPEDSGNYTCRASNGSGS-NTSTSV 76 (80)
T ss_dssp EEETTSEEEEEEEEESSSSS-EEEEEETTE--EEEE-------ESS--EEEESSEEGGGTEEEEEEEEETTEE-EEEEEE
T ss_pred EEeCCCcEEEEEEEEcccce-eeeeeeeee--eeee-------eee--eeeeeeeccccCEEEEEEEEeCCCC-eEeeeE
Confidence 36789999999999987776 899998652 2211 111 2667888999999999999996553 222244
Q ss_pred EEE
Q psy11549 150 QVV 152 (261)
Q Consensus 150 ~v~ 152 (261)
.|.
T Consensus 77 ~v~ 79 (80)
T PF13895_consen 77 NVT 79 (80)
T ss_dssp EEE
T ss_pred Eee
Confidence 443
No 173
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.77 E-value=3e-07 Score=57.41 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=51.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccc-----cccCCceEE---eCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGET-----LDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
+.+.+|+++.|.|.+...... .+.|++.+.... ......++. ..+....|.|.++..+|.|.|+|.+..
T Consensus 7 vtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 7 VTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred eEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 678899999999999987665 688886653211 112334444 234566899999999999999999986
No 174
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.76 E-value=6.3e-07 Score=60.90 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=48.5
Q ss_pred EEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcc-eEEeecCCeEEEEeecCCCCCCCe-EEEEEEEe
Q psy11549 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNC-SVRNETTSSVHISCTPGYDGGLPQ-TFTLELYS 195 (261)
Q Consensus 118 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~-~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~ 195 (261)
+|.|.++..+|.|.|.|.+.+..+.... .+.+.+..+|...... .+....+..+.|.|.+ .+..|. .-+.|++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~--~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a--~g~~P~~~~i~W~~~ 77 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQ--IIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHI--AGYYPLDVQVEWTRE 77 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceee--EEEEEEecCCceEEeCCCceeecCCcEEEEEEE--CCCCCCCeEEEEEEC
Confidence 6899999999999999999987666555 4455555666421110 1111247889999998 555664 23344444
No 175
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.76 E-value=4e-08 Score=59.26 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=38.8
Q ss_pred CCCCeeccCC-CCceEE-EECCeEEEccCCC----CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHN-TSARII-LSNQSLVLQKVSR----QSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~-~~~~~~-~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
+|||+++... +.+... ..+++|.|..+.. +|+|.|+|.|.|..|...+..+.|
T Consensus 18 ~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 18 TRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred EECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 5889887532 333333 3567999998752 579999999999999987776655
No 176
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.74 E-value=3.3e-08 Score=61.83 Aligned_cols=54 Identities=37% Similarity=0.612 Sum_probs=41.8
Q ss_pred CCCCeeccCCCCceEEEEC--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.+|..+........+ .+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V 90 (90)
T PF07679_consen 35 YKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA-TASVNLTV 90 (90)
T ss_dssp EETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred cccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE-EEEEEEEC
Confidence 4788888765443444333 489999999999999999999998877 66677765
No 177
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.73 E-value=4.7e-08 Score=59.42 Aligned_cols=44 Identities=32% Similarity=0.501 Sum_probs=36.5
Q ss_pred CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|+|
T Consensus 36 ~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 36 GRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 34445677899999999999999999999999987677676654
No 178
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.72 E-value=2.5e-08 Score=60.15 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=34.6
Q ss_pred CCCCeeccCCC--CceEEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549 1 MAGGIPLAHNT--SARIIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEA 46 (261)
Q Consensus 1 ~~ng~~l~~~~--~~~~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 46 (261)
||||++|.... ..++.. ..++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 19 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 19 FKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred EECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 57899886432 112221 23589999999999999999999999876
No 179
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.72 E-value=1.1e-07 Score=59.46 Aligned_cols=65 Identities=8% Similarity=0.100 Sum_probs=47.2
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
..+..|++++|.|... .+.. .+.|++++...... ..........|.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~-~f~l~k~g~~~~~~----~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAV-EYRLYREGSTFAVK----KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCC-EEEEEECCCCcccc----ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3467999999999886 3334 79999987532211 1112344557999999999999999999875
No 180
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.72 E-value=4.8e-08 Score=61.00 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=31.6
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
++|.|.+++.+|+|.|+|.|.|..|.. ..++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGIS-HHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcc-cceEEEEE
Confidence 479999999999999999999999987 66778877
No 181
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.71 E-value=3e-08 Score=59.68 Aligned_cols=46 Identities=26% Similarity=0.466 Sum_probs=35.5
Q ss_pred CCCCeeccCCCCce-EEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549 1 MAGGIPLAHNTSAR-IIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEA 46 (261)
Q Consensus 1 ~~ng~~l~~~~~~~-~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 46 (261)
+|||++|..+.... ... ..++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 19 ~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 19 FKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred EcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 58999997543322 111 23589999999999999999999999986
No 182
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.70 E-value=2e-07 Score=55.93 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=45.4
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCcccccc----CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDV----GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ 143 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 143 (261)
+.|.|...+..|+.++.||+++....-.. .+..+. ..+.|.+.....+|.+.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t---~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVS---VSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEE---EEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999998776666999999885322111 011111 24469999999999999999999987653
No 183
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.69 E-value=1.8e-07 Score=58.40 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccc--------eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLN--------LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~ 241 (261)
|+.+.|.|.+ .+.|...+.|++...... ............|.|.+++.+|+|.| .|.|.|.+|....
T Consensus 1 G~~v~L~C~~---~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA---TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYY--ICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC---CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEE--EEEEEcCCCceEE
Confidence 5789999997 444544444555432210 00011112345799999999999999 9999999999888
Q ss_pred eeeeeeeeccc
Q psy11549 242 VIWDDFSMSGA 252 (261)
Q Consensus 242 s~~~~~~~~~~ 252 (261)
+..+.|.....
T Consensus 76 ~~~l~V~~~~~ 86 (90)
T cd05726 76 KAYLEVTDVIA 86 (90)
T ss_pred EEEEEEeeccc
Confidence 88888875433
No 184
>KOG0196|consensus
Probab=98.69 E-value=1.4e-06 Score=72.61 Aligned_cols=135 Identities=11% Similarity=0.064 Sum_probs=103.4
Q ss_pred eeEEEEecCCCCcCeEEEEEEEcCCceEE----eeEEEEEE-eCCCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEE
Q psy11549 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQV----TPCLYQVV-LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTF 189 (261)
Q Consensus 116 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~~v~-~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~ 189 (261)
.....+.++.....+.|...|.|...... ..+.+.|. -...|++...+.+.....++++|+|..+...+.. ..|
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildY 476 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDY 476 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeE
Confidence 34688899999999999999999754322 22233332 2345556666777778899999999976554444 449
Q ss_pred EEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549 190 TLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA 252 (261)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~ 252 (261)
.+.|+.+......+.......+..+|.+ |.+++.|.|+|+|.-.+|.+..|...++.+..+
T Consensus 477 Evky~ek~~~e~~~~~~~t~~~~~ti~g--L~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 477 EVKYYEKDEDERSYSTLKTKTTTATITG--LKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred EEEEeeccccccceeEEecccceEEeec--cCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 9999988766555566666678899999 999999999999999999999999999988766
No 185
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.68 E-value=2.9e-07 Score=58.14 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=52.6
Q ss_pred EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc---eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549 166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN---LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV 242 (261)
Q Consensus 166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s 242 (261)
....|+.+.|.|.+ . +.|..-+.|++...... ..... ......|.|.++..+|.|.| +|.|.|.+|..+.+
T Consensus 14 ~~~~G~~v~L~C~~--~-g~P~p~v~W~k~g~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~~ 87 (95)
T cd05730 14 TANLGQSVTLACDA--D-GFPEPTMTWTKDGEPIESGEEKYSF-NEDGSEMTILDVDKLDEAEY--TCIAENKAGEQEAE 87 (95)
T ss_pred EEeCCCCEEEEEec--c-EeCCCEEEEEECCEECcCCCCEEEE-eCCCCEEEECCCChhhCEEE--EEEEEcCCCeEEEE
Confidence 34569999999997 3 44433333444422111 11211 22346799999999999999 99999999998888
Q ss_pred eeeeeee
Q psy11549 243 IWDDFSM 249 (261)
Q Consensus 243 ~~~~~~~ 249 (261)
..+.+..
T Consensus 88 ~~L~V~~ 94 (95)
T cd05730 88 IHLKVFA 94 (95)
T ss_pred EEEEEEe
Confidence 8777653
No 186
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.68 E-value=4.7e-08 Score=61.18 Aligned_cols=50 Identities=28% Similarity=0.497 Sum_probs=38.9
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCC-CCCEeEEEEEEeCCCcceeee
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSR-QSAGTYKCSAINTKGEATSNQ 50 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~ 50 (261)
+|||.+|...........++.|.|.++.. +|+|.|+|.|.|..|...++.
T Consensus 39 ~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~ 89 (91)
T cd04967 39 LMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE 89 (91)
T ss_pred EECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence 57888885333334556778999998874 999999999999999876553
No 187
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.68 E-value=7.6e-08 Score=60.38 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=38.6
Q ss_pred CCCCeeccCCCCceEEEE---CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
+|||++|..+.+ ..+.. .++|.|.+++.+|+|.|+|.|.|..|.. +.++.|
T Consensus 38 ~k~g~~l~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l 91 (92)
T cd05747 38 MREGQIIVSSQR-HQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ-EAQFTL 91 (92)
T ss_pred EECCEECCCCCc-EEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE-eEEEEe
Confidence 478888864333 33333 2489999999999999999999999986 555554
No 188
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.67 E-value=2.4e-07 Score=58.84 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=49.9
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc---------eeEEEe-cCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLN---------LLVNLT-NLDTPAFTLEDLGLDGTVLMRVVISGVNAKG 237 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G 237 (261)
..|+.++|.|.+ .+.|.+.+.|++...... ..+... ......|.|.+++.+|.|.| .|.|.|.+|
T Consensus 14 ~~G~~v~l~C~~---~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G 88 (98)
T cd05870 14 VENGAATLSCKA---EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY--DCEAASRIG 88 (98)
T ss_pred cCCCcEEEEEec---ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE--EEEEeccCC
Confidence 459999999997 455544444444321110 112221 12235799999999999999 999999999
Q ss_pred cCCceeeee
Q psy11549 238 RSLPVIWDD 246 (261)
Q Consensus 238 ~~~~s~~~~ 246 (261)
....+..+.
T Consensus 89 ~~~~~~~l~ 97 (98)
T cd05870 89 GHQKSMYLD 97 (98)
T ss_pred cceeEEEEe
Confidence 888776664
No 189
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.67 E-value=5.8e-07 Score=58.53 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=53.0
Q ss_pred EEeeCCCcEEEEEEEeeCC---CCceeEEEEcCCc-------------cccccCC----ceEEe----CCceeEEEEecC
Q psy11549 69 VGASRSESVDIHCAVEADP---PARSFKWKFNNSG-------------ETLDVGS----ERFSS----GSRGSMLRYTPV 124 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~-------------~~~~~~~----~~~~~----~~~~~~l~i~~~ 124 (261)
+.+..|+.+.|.|...... ....+.|.+.... ....... .+... .....++.|.++
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 5677999999999987643 2348999442111 1110011 12221 234568999999
Q ss_pred CCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549 125 TELDYGTLSCAAQNAIGTQVTPCLYQV 151 (261)
Q Consensus 125 ~~~d~g~y~C~~~~~~~~~~~~~~~~v 151 (261)
..+|.|.|+|.+.|..+.......+.+
T Consensus 88 ~~sD~G~Y~C~v~n~p~~~~~~~~~~l 114 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDIVGKSSQVTL 114 (116)
T ss_pred CcccCEEEEEEEEcCCCcCCceeEEEE
Confidence 999999999999998664443334443
No 190
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.67 E-value=6.8e-08 Score=61.65 Aligned_cols=55 Identities=38% Similarity=0.593 Sum_probs=39.6
Q ss_pred CCCCeeccC----CCCceEEEECCeEEEcc-----CCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAH----NTSARIILSNQSLVLQK-----VSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~----~~~~~~~~~~~~L~i~~-----~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||||.++.. ...+.....++.+.+.. ++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 36 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 36 LKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 578988864 22334445565544333 37899999999999999996677788776
No 191
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.66 E-value=6.5e-08 Score=58.08 Aligned_cols=58 Identities=34% Similarity=0.595 Sum_probs=41.1
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
+.|.|.+.+.+++..+.|+ ... . .............+.|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~--~-~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSN--P-SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEE--E-EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecC--C-ceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 9999999998855599998 110 0 01111122333455799999999999999999986
No 192
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.66 E-value=8e-08 Score=59.88 Aligned_cols=56 Identities=25% Similarity=0.474 Sum_probs=41.6
Q ss_pred CCCCeeccCCC--CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 1 MAGGIPLAHNT--SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 1 ~~ng~~l~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
||||..+.... ..+.....+.|.|.+++.+|+|.|+|.|.+..+.....++.|.|.
T Consensus 30 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 30 LFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred EECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 46777775432 234455566899999999999999999998876655667777774
No 193
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.65 E-value=5.7e-07 Score=54.80 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=53.0
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 148 (261)
..+..|+.+.|.|...+... .+.|++++.. +.. +.++..... -|.|..+..+|+|.|.|.+.-. |-......
T Consensus 6 ~tv~~g~~v~L~C~~~s~~A--~v~W~~ng~~--l~~-~~r~~~~~~--GLlI~~~~~~dsG~Y~C~s~E~-gf~~~~~~ 77 (85)
T cd05872 6 RTVAPGADVVLPCQLRSNLA--SPVWLFNGTP--LNA-QFSYRVGTD--GLLILVTSPEHSGTYRCYSEEE-GFQQLVAS 77 (85)
T ss_pred EEEecCCCEEEECCCCCCCc--cEEEEECCcc--cCC-CcceEEeCC--CCEEEECCHhhCEEEEEEEecC-CCeEEEEE
Confidence 66789999999999988643 7999998864 222 233333322 3789999999999999998743 33333334
Q ss_pred EEEEe
Q psy11549 149 YQVVL 153 (261)
Q Consensus 149 ~~v~~ 153 (261)
+.+.+
T Consensus 78 y~l~v 82 (85)
T cd05872 78 YSLNV 82 (85)
T ss_pred EEEEE
Confidence 44443
No 194
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.65 E-value=8.5e-07 Score=57.23 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCCcEEEEEEEeeCC-----CCceeEEEEcCCccc-----c-cc---------CCceEEeC---CceeEEEEecCCCCcC
Q psy11549 73 RSESVDIHCAVEADP-----PARSFKWKFNNSGET-----L-DV---------GSERFSSG---SRGSMLRYTPVTELDY 129 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~~-----~-~~---------~~~~~~~~---~~~~~l~i~~~~~~d~ 129 (261)
.|++++|+|.....+ ....+.|++...+.. + .. ...++... ....+|.|.++..+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999987663 233699998542210 0 00 01222321 2356899999999999
Q ss_pred eEEEEEEEcCCceEEee
Q psy11549 130 GTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 130 g~y~C~~~~~~~~~~~~ 146 (261)
|.|.|.+.+..+.....
T Consensus 81 G~Y~C~v~~~~~~~~~~ 97 (106)
T cd05877 81 GRYRCEVIDGLEDESVV 97 (106)
T ss_pred EEEEEEEEecccceEEE
Confidence 99999999876665553
No 195
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.65 E-value=2.4e-08 Score=61.16 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=38.1
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
||||+.+.. ...+..|.|.+++.+|+|.|+|.+.+..+...|..+.|+|
T Consensus 35 ~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 35 YRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred EECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 456665531 1235689999999999999999999999887777777765
No 196
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.65 E-value=2.9e-07 Score=57.24 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=50.5
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF 247 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~ 247 (261)
..|+.+.|.|.+ .+.|..-..|++............ .....|.|.+++.+|+|.| +|.|.|..|....+..+.+
T Consensus 14 ~~g~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y--~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 14 LKGQNVTLECFA---LGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTY--ECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred eCCCcEEEEEEe---eEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEE--EEEEEECCCcEEEEEEEEE
Confidence 459999999997 344533334445433221111111 2457899999999999999 9999999998877766654
No 197
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.64 E-value=8.7e-08 Score=58.78 Aligned_cols=42 Identities=21% Similarity=0.455 Sum_probs=35.1
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCC
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTK 43 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~ 43 (261)
+|||++|..+.. +....++.|.|.+++.+|+|.|+|.+.+..
T Consensus 30 ~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 30 KFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 489999986544 455677899999999999999999998774
No 198
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.63 E-value=3.7e-07 Score=55.87 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=45.1
Q ss_pred EEEEEEEeeC-CCCceeEEEEcCCccccccCCceEE--eCC----ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 77 VDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFS--SGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 77 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~--~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
+.|.|.+.+. |.+ .+.|++++.. +........ ..+ ..+.|.+.....+|.|.|+|.|.+..........+
T Consensus 2 ~~L~C~v~g~~P~~-~v~W~~~g~~--l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~ 78 (82)
T cd05759 2 YNLTCRARGAKPAA-EIIWFRDGEV--LDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV 78 (82)
T ss_pred EEEEEEEeCccCCC-EEEEEECCEE--ccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence 6899999985 555 8999998742 221111111 111 13467787777788899999999875443333344
Q ss_pred EE
Q psy11549 150 QV 151 (261)
Q Consensus 150 ~v 151 (261)
++
T Consensus 79 ~l 80 (82)
T cd05759 79 TL 80 (82)
T ss_pred EE
Confidence 44
No 199
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.63 E-value=1e-07 Score=59.73 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=38.7
Q ss_pred CCCCeeccCCC-----CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549 1 MAGGIPLAHNT-----SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR 54 (261)
Q Consensus 1 ~~ng~~l~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~ 54 (261)
||||.++.... ..++...+..|.|.++..+|+|.|+|++.|..... ...+.|+
T Consensus 46 yK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~-~~~i~l~ 103 (104)
T cd05896 46 YKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCM-KVSMSLT 103 (104)
T ss_pred EECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcce-EEEEEEE
Confidence 46766664322 24778889999999999999999999999887544 3334444
No 200
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.62 E-value=2.8e-07 Score=58.31 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=52.4
Q ss_pred eCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC--------------CceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG--------------SERFSSGSRGSMLRYTPVTELDYGTLSCAAQ 137 (261)
Q Consensus 72 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--------------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 137 (261)
..|++++|+|..........+.|++.......... ..++.......+|.|.++..+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 37999999998765222337999975321111110 1133444556789999999999999999999
Q ss_pred cCCceEEeeEEEEEEe
Q psy11549 138 NAIGTQVTPCLYQVVL 153 (261)
Q Consensus 138 ~~~~~~~~~~~~~v~~ 153 (261)
...+.... ..+.+.|
T Consensus 82 ~~~~~~~~-~~f~L~v 96 (97)
T cd05775 82 TKNGVTIT-KEFTLHI 96 (97)
T ss_pred cCCCCeEE-EEEEEEe
Confidence 87655433 2454443
No 201
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.62 E-value=4.3e-07 Score=56.98 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCcccccc---------------CCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDV---------------GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---------------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
|++|+|.|........ .+.|++......... ...++..... .+|.|.++..+|+|.|+|.+..
T Consensus 1 G~~VtL~c~~~~~~~~-~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQ-EITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCE-EEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEc
Confidence 7899999988764444 899998654321110 1112233333 6899999999999999999998
Q ss_pred CCceE
Q psy11549 139 AIGTQ 143 (261)
Q Consensus 139 ~~~~~ 143 (261)
..+..
T Consensus 79 ~~~~~ 83 (92)
T cd05741 79 TNGVT 83 (92)
T ss_pred CCCcE
Confidence 76443
No 202
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.61 E-value=8.2e-07 Score=57.41 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=50.8
Q ss_pred CCCcEEEEEEEeeCCC-----------CceeEEEEcCCccc---cc----------cCCceEEe-----CCceeEEEEec
Q psy11549 73 RSESVDIHCAVEADPP-----------ARSFKWKFNNSGET---LD----------VGSERFSS-----GSRGSMLRYTP 123 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-----------~~~~~W~~~~~~~~---~~----------~~~~~~~~-----~~~~~~l~i~~ 123 (261)
.|++++|+|....... ...|.|++-..+.. +. ....++.. ......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999999875431 23899997432111 00 01113333 22567899999
Q ss_pred CCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVL 153 (261)
Q Consensus 124 ~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~ 153 (261)
+..+|+|.|+|.+.+....... .+.+.|
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~--~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYD--TVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCcee--EEEEEE
Confidence 9999999999999976555444 344443
No 203
>KOG3515|consensus
Probab=98.60 E-value=4.2e-07 Score=75.93 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=98.4
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
.+..|+.+.|.|.+.+.|++.++.|++...+.. .....+... .|.......+..+.|.|++.|..+..... .+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~c~a~ns~~~~~~~-~~ 90 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADP--TLVTTGDVRDTVAELNCRAFNSVGMPSRC-PM 90 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCC--ceeeecchhhhhhhhhhhhcccccCceec-ce
Confidence 678999999999999999988999999876533 212222222 57777888888899999999986655443 44
Q ss_pred EEEeCCCCC-CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-------eeEEE---ecCCCCcEEEcCC
Q psy11549 150 QVVLAGKPQ-PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-------LLVNL---TNLDTPAFTLEDL 218 (261)
Q Consensus 150 ~v~~~~~p~-~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~i~~~ 218 (261)
.+.+..+|. .+.........+..+.+.|.....+.....+.|++....... ..+.. .......+.+...
T Consensus 91 ~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~ 170 (741)
T KOG3515|consen 91 ILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS 170 (741)
T ss_pred eeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE
Confidence 455555554 333334445668889999965333333344666654311110 00000 0011234444444
Q ss_pred CCCCccEEEEEEEEEcC
Q psy11549 219 GLDGTVLMRVVISGVNA 235 (261)
Q Consensus 219 ~l~~~~~Y~~~~~a~N~ 235 (261)
+..+.+.| +|.|.|.
T Consensus 171 Rka~~g~~--tC~A~nr 185 (741)
T KOG3515|consen 171 RKADNGNY--TCPANNR 185 (741)
T ss_pred EecCCcee--Ecccccc
Confidence 47888889 8889885
No 204
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.60 E-value=5.4e-07 Score=58.49 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=50.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe----CCceeEEEEecCCCCcCeEEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS----GSRGSMLRYTPVTELDYGTLS 133 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~ 133 (261)
+.+..|++++|.|.+...+.. .+.|++...+.... ....++.. ......|.|.++..+|+|.|.
T Consensus 8 v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~ 86 (109)
T cd04983 8 LSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF 86 (109)
T ss_pred eEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence 678899999999999877555 89999754221100 11223322 235678999999999999999
Q ss_pred EEEEcCC
Q psy11549 134 CAAQNAI 140 (261)
Q Consensus 134 C~~~~~~ 140 (261)
|.+.+..
T Consensus 87 C~~~~~~ 93 (109)
T cd04983 87 CALSESG 93 (109)
T ss_pred EEEecCC
Confidence 9998754
No 205
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.58 E-value=1.4e-06 Score=55.58 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=48.6
Q ss_pred CCcEEEEEEEeeCCC--CceeEEEEcCCccccc-------c-------CCceEEe-----CCceeEEEEecCCCCcCeEE
Q psy11549 74 SESVDIHCAVEADPP--ARSFKWKFNNSGETLD-------V-------GSERFSS-----GSRGSMLRYTPVTELDYGTL 132 (261)
Q Consensus 74 g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~-------~-------~~~~~~~-----~~~~~~l~i~~~~~~d~g~y 132 (261)
|++++|+|....... ...+.|++........ . ...++.. .....+|.|.++..+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999998863322 2368888754211110 0 0112222 12356899999999999999
Q ss_pred EEEEEcCCceEEeeEEEEEEe
Q psy11549 133 SCAAQNAIGTQVTPCLYQVVL 153 (261)
Q Consensus 133 ~C~~~~~~~~~~~~~~~~v~~ 153 (261)
+|.+.+..+.... .+.+.|
T Consensus 81 ~C~v~~~~~~~~~--~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEA--TVELKV 99 (100)
T ss_pred EEEEecCCcEEEE--EEEEEE
Confidence 9999987665444 444443
No 206
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.58 E-value=1.4e-06 Score=56.22 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=48.8
Q ss_pred CCCcEEEEEEEeeCC-----CCceeEEEEcC---Ccc-ccc--cCC-------c--eEE---eCCceeEEEEecCCCCcC
Q psy11549 73 RSESVDIHCAVEADP-----PARSFKWKFNN---SGE-TLD--VGS-------E--RFS---SGSRGSMLRYTPVTELDY 129 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~---~~~-~~~--~~~-------~--~~~---~~~~~~~l~i~~~~~~d~ 129 (261)
.|++++|.|.....+ ....+.|++.. ... .+. ... . +.. ......+|.|.++..+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999988653 23489999862 111 000 000 0 111 123567899999999999
Q ss_pred eEEEEEEEcCCceEEee
Q psy11549 130 GTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 130 g~y~C~~~~~~~~~~~~ 146 (261)
|.|.|.+.+..+.....
T Consensus 81 G~Y~C~v~~~~~~~~~~ 97 (106)
T cd05714 81 GRYRCEVIDGIEDEQDT 97 (106)
T ss_pred EEEEEEEEcCCCceEEE
Confidence 99999999876554553
No 207
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.56 E-value=2.1e-06 Score=55.57 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=48.5
Q ss_pred CCCcEEEEEEEeeCCC---------CceeEEEEcCCccccc-------------cCCceEEe-----CCceeEEEEecCC
Q psy11549 73 RSESVDIHCAVEADPP---------ARSFKWKFNNSGETLD-------------VGSERFSS-----GSRGSMLRYTPVT 125 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~---------~~~~~W~~~~~~~~~~-------------~~~~~~~~-----~~~~~~l~i~~~~ 125 (261)
.|++++|+|.....+. ...+.|++...+.... ....++.. ......|.|.++.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 4889999999876542 2479999853211110 01112222 2345689999999
Q ss_pred CCcCeEEEEEEEcCCceEEe
Q psy11549 126 ELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 126 ~~d~g~y~C~~~~~~~~~~~ 145 (261)
.+|+|.|.|.+.........
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~ 100 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQD 100 (110)
T ss_pred hhhCEEEEEEEEeCCCcceE
Confidence 99999999999876544444
No 208
>PHA03376 BARF1; Provisional
Probab=98.55 E-value=7.5e-06 Score=56.44 Aligned_cols=122 Identities=18% Similarity=0.150 Sum_probs=73.1
Q ss_pred EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCc---ccccc-----------CCceEEe--CCceeEEEEecCCCCcCe
Q psy11549 69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSG---ETLDV-----------GSERFSS--GSRGSMLRYTPVTELDYG 130 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~---~~~~~-----------~~~~~~~--~~~~~~l~i~~~~~~d~g 130 (261)
+.+..|+.+.|+|...... ....|.|++.+.+ ..+.. ...++.+ +.++.+|.|.++..+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 6677899999999876322 3447999984321 11100 1111222 345668999999999999
Q ss_pred EEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc
Q psy11549 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQTFTLELYSASDL 199 (261)
Q Consensus 131 ~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~ 199 (261)
.|+|.++..........++... .|..+.+.. ...+...+.|.. ++.|.++..|..+.+.+
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V------~~~~Lsv~a~~~dFp~~~~~~i~C~s---ggfP~P~~~Wle~~~~~ 165 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVV------KPLTLSVHSERSQFPDFSVLTVTCTV---NAFPHPHVQWLMPEGVE 165 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeee------ecceEEEEeccccCCCCCeeEEEEec---CCcCCchheeccccCCC
Confidence 9999998754433332233222 111111211 125667889995 88888776666665544
No 209
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.51 E-value=6.4e-07 Score=55.90 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=52.3
Q ss_pred CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--e-EEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--L-VNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA 235 (261)
Q Consensus 159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~ 235 (261)
+|.+..+ ..|+.+.|.|.+ .|.|.+-..|++....... . ..........|.|.++..+|.|.| +|.|.|.
T Consensus 6 ~p~~~~v--~~G~~v~l~C~~---~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y--~C~A~N~ 78 (90)
T cd04972 6 GPNATVV--YEGGTATIRCTA---EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTV--TCTAENP 78 (90)
T ss_pred CCcCEEE--cCCCcEEEEEEE---EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEE--EEEEECC
Confidence 4444333 469999999998 3556554445444322110 1 111122335789999999999999 9999999
Q ss_pred CCcCCceeeee
Q psy11549 236 KGRSLPVIWDD 246 (261)
Q Consensus 236 ~G~~~~s~~~~ 246 (261)
+|....+..+.
T Consensus 79 ~G~~~~~~~L~ 89 (90)
T cd04972 79 VGQANVSVQVT 89 (90)
T ss_pred CCceeEEEEEe
Confidence 99877765543
No 210
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.50 E-value=1.3e-06 Score=56.81 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=49.4
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------------cCCceEEe--C-CceeEEEEecCCCCcCe
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------------VGSERFSS--G-SRGSMLRYTPVTELDYG 130 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~~~~~--~-~~~~~l~i~~~~~~d~g 130 (261)
+.+.+|++++|.|.+.+ +.+ .+.||+...+.... ....++.. . .....|.|.++..+|+|
T Consensus 8 ~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 8 LIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred eEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 67889999999999987 444 79999864321111 11223322 1 24568999999999999
Q ss_pred EEEEEEEcCC
Q psy11549 131 TLSCAAQNAI 140 (261)
Q Consensus 131 ~y~C~~~~~~ 140 (261)
.|.|.+.+..
T Consensus 86 ~Y~Ca~~~~~ 95 (110)
T cd05899 86 VYLCASSLGG 95 (110)
T ss_pred EEEEEeeCCC
Confidence 9999998643
No 211
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.50 E-value=1.3e-06 Score=55.27 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=49.0
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-------eeEEEe-cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-------LLVNLT-NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~ 239 (261)
..|+.+.|.|.+ .+.|.....|++...... ...... ......|.|.+++.+|+|.| .|.|.|.+|..
T Consensus 14 ~~g~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~ 88 (96)
T cd05732 14 VELEQITLTCEA---EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY--DCEASNRIGGD 88 (96)
T ss_pred ecCCcEEEEEEE---eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe--EEEEEeCCCCc
Confidence 458999999997 344544344444321110 011111 12235799999999999999 99999999998
Q ss_pred Cceeeee
Q psy11549 240 LPVIWDD 246 (261)
Q Consensus 240 ~~s~~~~ 246 (261)
..+..+.
T Consensus 89 ~~s~~l~ 95 (96)
T cd05732 89 QQSMYLE 95 (96)
T ss_pred EEEEEEe
Confidence 7776654
No 212
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.50 E-value=3.1e-06 Score=53.72 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=45.6
Q ss_pred CcEEEEEEEeeCC--CCceeEEEEcCCcccc--------------ccCCceEEeCC---ceeEEEEecCCCCcCeEEEEE
Q psy11549 75 ESVDIHCAVEADP--PARSFKWKFNNSGETL--------------DVGSERFSSGS---RGSMLRYTPVTELDYGTLSCA 135 (261)
Q Consensus 75 ~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~--------------~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~ 135 (261)
++++|.|.....+ ....+.|++...+... .....+..... ....|.|.++..+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999988765 3337999986532100 00011222211 356899999999999999999
Q ss_pred EEc-CCceEEe
Q psy11549 136 AQN-AIGTQVT 145 (261)
Q Consensus 136 ~~~-~~~~~~~ 145 (261)
+.. +.|....
T Consensus 81 v~~~~~g~~~~ 91 (98)
T cd05718 81 FATFPQGNRQK 91 (98)
T ss_pred EEeCCCCcEEE
Confidence 875 4555554
No 213
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.49 E-value=1.1e-06 Score=55.21 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=46.0
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
..+..|++++|.|.... ... .+.|++.+........... ......+.|.|..++.+|+|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~~~~~~-~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVLHLYEK-HHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCceecccc-cCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 34679999999998765 223 7999998754222110000 1123355789999999999999999764
No 214
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.48 E-value=6.8e-07 Score=52.58 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=43.2
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceee
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIW 244 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~ 244 (261)
|+.+.|.|.+ .|.|.+.+.|++........... ......+.|.+ +.+.|.| +|.|.|.+|..+.+..
T Consensus 1 G~~v~L~C~a---~G~P~P~v~W~k~g~~l~~~~~~-~~~~~~L~i~~--~~d~G~Y--~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVA---VGAPMPYVKWMKGGEELTKEDEM-PVGRNVLELTN--IYESANY--TCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEe---eecCCCEEEEEECCEECCCccce-ecCccEEEEec--cccCeeE--EEEEEeCCCEEEEEEE
Confidence 5679999997 45565544455543222111111 12335788999 7899999 9999999997665543
No 215
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.48 E-value=2.3e-06 Score=55.04 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=49.2
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--------------cCCceEEe--CC--ceeEEEEecCCCCcCeE
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--------------VGSERFSS--GS--RGSMLRYTPVTELDYGT 131 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~--~~--~~~~l~i~~~~~~d~g~ 131 (261)
.+..|++++|.|.+........+.|++...+.... ....++.. .. ....|.|.++..+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 45689999999999876333379999854311100 01122221 11 46689999999999999
Q ss_pred EEEEEEcCCc
Q psy11549 132 LSCAAQNAIG 141 (261)
Q Consensus 132 y~C~~~~~~~ 141 (261)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999997654
No 216
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.47 E-value=1.3e-06 Score=54.48 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=48.5
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCC---c------cce-eE-EE-----ecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSAS---D------LNL-LV-NL-----TNLDTPAFTLEDLGLDGTVLMRVVISGV 233 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~---~------~~~-~~-~~-----~~~~~~~~~i~~~~l~~~~~Y~~~~~a~ 233 (261)
|+.++|.|.+ .+.|.+-+.|++... . .+. .. .. .......+.|.+++.+|.|.| +|.|.
T Consensus 1 G~~v~l~C~v---~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~A~ 75 (90)
T cd04974 1 GSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEY--TCLAG 75 (90)
T ss_pred CCcEEEEEEE---eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEE--EEEee
Confidence 5678999997 455544444444321 0 010 00 00 011235789999999999999 99999
Q ss_pred cCCCcCCceeeeee
Q psy11549 234 NAKGRSLPVIWDDF 247 (261)
Q Consensus 234 N~~G~~~~s~~~~~ 247 (261)
|.+|....+..+.|
T Consensus 76 N~~G~~~~sa~L~V 89 (90)
T cd04974 76 NSIGPSHHSAWLTV 89 (90)
T ss_pred cccCcccCCEEEEe
Confidence 99999988888765
No 217
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.46 E-value=2.7e-06 Score=55.60 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=48.2
Q ss_pred EEeeCCCcEEEEEEEeeCCC---CceeEEEEcC--Cccc--c-c-------cCCc----eEE----eCCceeEEEEecCC
Q psy11549 69 VGASRSESVDIHCAVEADPP---ARSFKWKFNN--SGET--L-D-------VGSE----RFS----SGSRGSMLRYTPVT 125 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~--~~~~--~-~-------~~~~----~~~----~~~~~~~l~i~~~~ 125 (261)
+.+..|++++|.|.....++ ...+.|++.. .... + . .... +.. ......+|.|.++.
T Consensus 8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~ 87 (115)
T cd05880 8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ 87 (115)
T ss_pred EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence 67889999999999875432 2369997521 1111 0 0 0111 111 12235679999999
Q ss_pred CCcCeEEEEEEEcCCce
Q psy11549 126 ELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 126 ~~d~g~y~C~~~~~~~~ 142 (261)
.+|+|.|.|.+.+..+.
T Consensus 88 ~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 88 PTDNGTYTCQVKNPPDV 104 (115)
T ss_pred hhhCEEEEEEEEeCCCC
Confidence 99999999999986553
No 218
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.46 E-value=4.5e-07 Score=54.88 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDD 246 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~ 246 (261)
|+.+.|.|.+ .+.|.+.+.|++...... ..... .......|.|.++..+|.|.| +|.|.|..|......-+.
T Consensus 1 G~~v~l~C~~---~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVA---TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAY--TCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEE---EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEE--EEEEEecCCEEEecccEE
Confidence 5789999997 455544444455432211 12222 222346799999999999999 999999999665544443
No 219
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.46 E-value=1.6e-06 Score=53.48 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=51.6
Q ss_pred CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR 238 (261)
Q Consensus 159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~ 238 (261)
+|..+.+ ..|+.++|.|.+ .++.|.....|++.....+... ......|.|.+++.+|.|.| .|.|.|..|.
T Consensus 7 ~p~~~~v--~~G~~v~L~C~~--~~~~~~~~i~W~~~~~~~~~~~---~~~~~~L~I~~v~~~DsG~Y--~C~a~n~~g~ 77 (85)
T cd05754 7 EPRSQEV--RPGADVSFICRA--KSKSPAYTLVWTRVGGGLPSRA---MDFNGILTIRNVQLSDAGTY--VCTGSNMLDT 77 (85)
T ss_pred CCCceEE--cCCCCEEEEEEc--CCCCCCcEEEEEECCCcCCCcc---cccCCEEEECCCCHHHCEEE--EEEEeccCCe
Confidence 3443344 459999999997 3334544445555443322111 12346899999999999999 9999999998
Q ss_pred CCceeee
Q psy11549 239 SLPVIWD 245 (261)
Q Consensus 239 ~~~s~~~ 245 (261)
...+..+
T Consensus 78 ~~~~~~l 84 (85)
T cd05754 78 DEATATL 84 (85)
T ss_pred EeEEEEE
Confidence 7766543
No 220
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.45 E-value=7.1e-07 Score=56.96 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=35.5
Q ss_pred CCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR 54 (261)
Q Consensus 11 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~ 54 (261)
.+|..+..+++|.|.+++.+|+|.|+|.+.+.........+.|.
T Consensus 61 ~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 61 SGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 45778888999999999999999999999888755434455554
No 221
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.44 E-value=2.4e-06 Score=55.05 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=48.2
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe--CCceeEEEEecCCCCcCeEEEEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS--GSRGSMLRYTPVTELDYGTLSCA 135 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~ 135 (261)
+.+.+|++++|.|.+.+......+.|++...+.... ....++.. ......|.|.++..+|+|.|.|.
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca 89 (106)
T cd04980 10 LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQ 89 (106)
T ss_pred EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEE
Confidence 667899999999998765522379999754221110 00123332 23445799999999999999999
Q ss_pred EEcC
Q psy11549 136 AQNA 139 (261)
Q Consensus 136 ~~~~ 139 (261)
+.+.
T Consensus 90 ~~~~ 93 (106)
T cd04980 90 QYGT 93 (106)
T ss_pred EeCC
Confidence 8653
No 222
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.43 E-value=1.3e-06 Score=55.33 Aligned_cols=74 Identities=11% Similarity=0.177 Sum_probs=48.8
Q ss_pred cCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-------eeEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549 169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLN-------LLVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL 240 (261)
Q Consensus 169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~ 240 (261)
.|+.++|.|.+ .|.|.+...|++...... ..... .......|.|.+++.+|.|.| +|.|.|.+|...
T Consensus 16 ~g~~v~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G~~~ 90 (97)
T cd05869 16 LEEQITLTCEA---SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY--LCTASNTIGQDS 90 (97)
T ss_pred cCCCEEEEEEe---eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE--EEEEecCCCCee
Confidence 37999999997 344544333444322110 01111 111225799999999999999 999999999988
Q ss_pred ceeeeee
Q psy11549 241 PVIWDDF 247 (261)
Q Consensus 241 ~s~~~~~ 247 (261)
.+..+.|
T Consensus 91 ~~~~l~v 97 (97)
T cd05869 91 QSMYLEV 97 (97)
T ss_pred EEEEEEC
Confidence 8877654
No 223
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.42 E-value=1.5e-06 Score=53.02 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=46.5
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCC-ccceeE-------EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSAS-DLNLLV-------NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~ 241 (261)
|+.+.|.|.+ .+.|.+...|++... ...... .........|.|.++..+|.|.| .|.|.|..|....
T Consensus 1 G~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y--~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDV---TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLY--TCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeec---cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEE--EEEEecCCceEEE
Confidence 5788999986 455544444555421 111000 11112336799999999999999 9999999998766
Q ss_pred eeeee
Q psy11549 242 VIWDD 246 (261)
Q Consensus 242 s~~~~ 246 (261)
+..+.
T Consensus 76 ~~~l~ 80 (81)
T cd05765 76 NFPLS 80 (81)
T ss_pred EEEEe
Confidence 65543
No 224
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.40 E-value=9.6e-07 Score=56.05 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=37.4
Q ss_pred CCCCeeccCCC-CceEEEEC-------CeEEEccCCC-CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549 1 MAGGIPLAHNT-SARIILSN-------QSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKL 53 (261)
Q Consensus 1 ~~ng~~l~~~~-~~~~~~~~-------~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~~~l 53 (261)
++||.+|...+ .+..+... ++|.|.++.. +|.|.|+|.|.|..|.. ...+.|
T Consensus 37 ~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~-~~~~~L 97 (98)
T cd05758 37 TWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG-TAIISL 97 (98)
T ss_pred EECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc-cEEEEe
Confidence 36788886432 34444332 3899999999 55999999999999987 444544
No 225
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.40 E-value=4.5e-06 Score=54.77 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=47.8
Q ss_pred EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCccc-----ccc--------CCceE----Ee----CCceeEEEEecC
Q psy11549 69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGET-----LDV--------GSERF----SS----GSRGSMLRYTPV 124 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~-----~~~--------~~~~~----~~----~~~~~~l~i~~~ 124 (261)
+.+..|++++|.|....... ...+.|++...+.. +.. ...++ .. .....+|.|.++
T Consensus 8 v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 87 (116)
T cd05715 8 VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL 87 (116)
T ss_pred EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC
Confidence 56779999999998865432 23699986332100 000 11111 11 123468999999
Q ss_pred CCCcCeEEEEEEEcCCce
Q psy11549 125 TELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 125 ~~~d~g~y~C~~~~~~~~ 142 (261)
..+|+|.|.|.+.+..+.
T Consensus 88 ~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 88 QFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CcccCEEEEEEEEeCCCC
Confidence 999999999999986543
No 226
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.39 E-value=3.3e-06 Score=53.46 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCcccccc------C--------CceEE---eCCceeEEEEecCCCCcCeEEEEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDV------G--------SERFS---SGSRGSMLRYTPVTELDYGTLSCAA 136 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~------~--------~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~ 136 (261)
|++++|.|..........+.|++........+ . ..+.. .....++|.|.++..+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 78999999876554444699987432111000 0 01111 1234568999999999999999998
Q ss_pred Ec-CCceEEeeEEE
Q psy11549 137 QN-AIGTQVTPCLY 149 (261)
Q Consensus 137 ~~-~~~~~~~~~~~ 149 (261)
.. +.|.......|
T Consensus 81 ~~~p~g~~~~~~~L 94 (97)
T cd05846 81 NTFPDGSKSGTMCL 94 (97)
T ss_pred EeCCCCCeeeEEEE
Confidence 74 45554443333
No 227
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.39 E-value=8.3e-06 Score=52.53 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=48.4
Q ss_pred CCcEEEEEEEeeCC------CCceeEEEEcC--Cccc-c-------------ccCCceEEeC-----CceeEEEEecCCC
Q psy11549 74 SESVDIHCAVEADP------PARSFKWKFNN--SGET-L-------------DVGSERFSSG-----SRGSMLRYTPVTE 126 (261)
Q Consensus 74 g~~~~l~C~~~~~~------~~~~~~W~~~~--~~~~-~-------------~~~~~~~~~~-----~~~~~l~i~~~~~ 126 (261)
|++++|+|...-.| ....+.|.+-. .+.. . .....+..+. ....+|.|.++..
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999976432 13489998742 1100 0 0011122221 2467899999999
Q ss_pred CcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549 127 LDYGTLSCAAQNAIGTQVTPCLYQVVL 153 (261)
Q Consensus 127 ~d~g~y~C~~~~~~~~~~~~~~~~v~~ 153 (261)
+|+|.|.|.+......... .+.+.|
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~--~v~L~V 106 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQD--TVPLEV 106 (110)
T ss_pred HHCEEEEEEEEECCcccEE--EEEEEE
Confidence 9999999999985544444 444443
No 228
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.39 E-value=2.9e-06 Score=53.84 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=46.7
Q ss_pred EeeCCCcEEEEEEEeeC--CCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEE
Q psy11549 70 GASRSESVDIHCAVEAD--PPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSC 134 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C 134 (261)
.+.+|++++|.|.+... ... .+.|++...+.... ....++. .......|.|.++..+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 35689999999998765 233 69999754322211 0012333 23345679999999999999999
Q ss_pred EEEc
Q psy11549 135 AAQN 138 (261)
Q Consensus 135 ~~~~ 138 (261)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9875
No 229
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.38 E-value=5.2e-06 Score=51.96 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=48.5
Q ss_pred CcEEEEEEEeeCCCCceeEEEEcCCcccccc--------------CCceEEe---CCceeEEEEecCCCCcCeEEEEEEE
Q psy11549 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDV--------------GSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQ 137 (261)
Q Consensus 75 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--------------~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~ 137 (261)
++++|+|.....+....+.|.+........+ ...+... .....+|.|.++..+|.|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999988655555899987532111100 0012222 2335689999999999999999975
Q ss_pred -cCCceEEeeEEEE
Q psy11549 138 -NAIGTQVTPCLYQ 150 (261)
Q Consensus 138 -~~~~~~~~~~~~~ 150 (261)
.+.|....+..++
T Consensus 81 tfP~G~~~~~~~l~ 94 (96)
T cd05887 81 TFPLGNTQSSTTVT 94 (96)
T ss_pred eCCCCCeeEEEEEE
Confidence 5567666644443
No 230
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.37 E-value=2.2e-06 Score=53.44 Aligned_cols=42 Identities=29% Similarity=0.596 Sum_probs=32.5
Q ss_pred eEEEECCeEEEccCCCCCCEeEEEEEEe-CCCcceeeeEEEEEE
Q psy11549 14 RIILSNQSLVLQKVSRQSAGTYKCSAIN-TKGEATSNQLKLRVK 56 (261)
Q Consensus 14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~-~~~~~~s~~~~l~V~ 56 (261)
+....+++|.|.+++.+|+|.|+|.+.+ ..+.. ...+.|+|.
T Consensus 47 r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~~~l~v~ 89 (91)
T cd05871 47 RLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAKYTLHVI 89 (91)
T ss_pred cEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEEEEEEEe
Confidence 4455677899999999999999999985 44444 456777775
No 231
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.36 E-value=1.5e-06 Score=53.40 Aligned_cols=38 Identities=18% Similarity=0.477 Sum_probs=30.7
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCC-cceeeeEEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVK 56 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~-~~~s~~~~l~V~ 56 (261)
..+|.|.+++.+|+|.|+|.|.|..+ ...+.++.|+|.
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 34899999999999999999998765 334667777774
No 232
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.36 E-value=6.3e-06 Score=54.11 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=48.3
Q ss_pred EEeeCCCcEEEEEEEee--CCCCceeEEEEcCCccccc----------------cCCceEEe--CC--ceeEEEEecCCC
Q psy11549 69 VGASRSESVDIHCAVEA--DPPARSFKWKFNNSGETLD----------------VGSERFSS--GS--RGSMLRYTPVTE 126 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~--~~~~~~~~W~~~~~~~~~~----------------~~~~~~~~--~~--~~~~l~i~~~~~ 126 (261)
+.+..|++++|.|.+.+ .+.+ .+.|++...+.... ....++.. .. ....|.|.++..
T Consensus 8 ~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 8 ITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred EEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 67889999999999877 4444 79999853221110 01223332 22 456899999999
Q ss_pred CcCeEEEEEEEc
Q psy11549 127 LDYGTLSCAAQN 138 (261)
Q Consensus 127 ~d~g~y~C~~~~ 138 (261)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999874
No 233
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.34 E-value=1.8e-06 Score=53.08 Aligned_cols=76 Identities=7% Similarity=-0.054 Sum_probs=47.3
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-----E--EecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-----N--LTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV 242 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s 242 (261)
|+.+.|.|.+..+...++.+.|.+.......... . ........|+|.++++.|.|.| .|.|.|..|....+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y--~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTY--TCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEE--EEEEccCCCceEEE
Confidence 5789999998222113444555432211110000 0 0011235799999999999999 99999999988877
Q ss_pred eeeee
Q psy11549 243 IWDDF 247 (261)
Q Consensus 243 ~~~~~ 247 (261)
.-+.+
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 76654
No 234
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.34 E-value=3e-06 Score=53.50 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=31.1
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRV 55 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V 55 (261)
.+.+|.|.+++.+|.|.|+|.+.+. .|.. +..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNR-ESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEE
Confidence 4579999999999999999999994 5554 77788877
No 235
>KOG3515|consensus
Probab=98.33 E-value=1.1e-05 Score=67.88 Aligned_cols=222 Identities=17% Similarity=0.107 Sum_probs=124.6
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS 99 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~ 99 (261)
.+........|.|.|+|.+.+...... +..+.|.+...|.............+++.....-.+.+.|....+.|.+...
T Consensus 362 ~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~ 441 (741)
T KOG3515|consen 362 SHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLY 441 (741)
T ss_pred EeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecce
Confidence 567778899999999999987765442 2335556666665443332223344455444444444666655899988663
Q ss_pred ccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC-CCCcceEEeecCCeEEEEee
Q psy11549 100 GETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ-PPQNCSVRNETTSSVHISCT 178 (261)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~-~p~~~~v~~~~~~~~~l~c~ 178 (261)
. ........+............++...|.|.|.|.++|..|.... .+...+.+.|. .+.+..+....++++...|.
T Consensus 442 ~-~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~--~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~ 518 (741)
T KOG3515|consen 442 K-LSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQA--YLLLGVHTSPHNHHLQDQVEGATGNSVDGECM 518 (741)
T ss_pred e-cccccCceEEeeccccccccceeeeccCCcceeeeccCCCceee--EEeeccccCCcccccccccccCCCCcccceee
Confidence 2 22223333333333334446678899999999999998887766 34444444443 44444455556777888888
Q ss_pred cCCCCCCCeEEEEEEEeCCccceeE-----EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549 179 PGYDGGLPQTFTLELYSASDLNLLV-----NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS 248 (261)
Q Consensus 179 ~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~ 248 (261)
. .+......++-|.+......... .........+.+.. ......|+..|.+.|..--+..+..+.+.
T Consensus 519 q-~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~pA~~~~~l~~~ 590 (741)
T KOG3515|consen 519 Q-DEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSG--NSSLQASETACVVDGSSPPAGLSLVLKAY 590 (741)
T ss_pred c-cccccchhhhcccccCCCCcccccccccccccCCccceeecc--cccccccceEEeecCCCCccccceEEEec
Confidence 6 12222233555555543332111 11112335566666 33333344488888833244444444444
No 236
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.32 E-value=9.6e-06 Score=51.21 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=43.9
Q ss_pred cEEEEEEEeeCCC---CceeEEEEcCCcccccc--------------CCceEEe---CCceeEEEEecCCCCcCeEEEEE
Q psy11549 76 SVDIHCAVEADPP---ARSFKWKFNNSGETLDV--------------GSERFSS---GSRGSMLRYTPVTELDYGTLSCA 135 (261)
Q Consensus 76 ~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~--------------~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~ 135 (261)
.++|+|.....++ ...+.|.+...+..... ...+... ...+++|.|.++..+|.|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 5789998875332 22588987432111100 0011121 12356899999999999999999
Q ss_pred EEc-CCceEEee
Q psy11549 136 AQN-AIGTQVTP 146 (261)
Q Consensus 136 ~~~-~~~~~~~~ 146 (261)
+.+ +.|..+..
T Consensus 82 v~t~P~g~~~~~ 93 (99)
T cd05886 82 FATFPTGNRESQ 93 (99)
T ss_pred EEeCCCCCeEEE
Confidence 998 56655543
No 237
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.28 E-value=3.3e-06 Score=51.95 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=36.9
Q ss_pred CCCCeeccCCCCceEE---EECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 1 MAGGIPLAHNTSARII---LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|||.++..+...... .....|.|.+++.+|+|.|+|.+.|..|.. +.++.|.|
T Consensus 29 ~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~l~v 85 (85)
T cd05729 29 LKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYKVDV 85 (85)
T ss_pred EECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEEEeC
Confidence 4677777532211111 112379999999999999999999998885 55666653
No 238
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.27 E-value=3.7e-05 Score=49.77 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=28.5
Q ss_pred ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 115 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
...+|.|.++..+|+|.|.|.+............+.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~ 112 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD 112 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence 467899999999999999999998766555543333
No 239
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.27 E-value=2.8e-06 Score=53.22 Aligned_cols=44 Identities=32% Similarity=0.543 Sum_probs=35.0
Q ss_pred CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|.....+++|.|.+++.+|+|.|+|.+....+......+.|.|
T Consensus 49 ~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 49 GRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred CeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 44555667899999999999999999998887766566666653
No 240
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.27 E-value=5.2e-06 Score=51.19 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=48.7
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--------EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--------NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~ 241 (261)
|+.+.|.|.+..+......+.|.+.......... .........|.|.++++.|.|.| .|.|.|..|....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y--~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRY--TCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEE--EEEEeecceEecc
Confidence 5788999997222222344556443321110000 00011246899999999999999 9999999998888
Q ss_pred eeeeeee
Q psy11549 242 VIWDDFS 248 (261)
Q Consensus 242 s~~~~~~ 248 (261)
+.-+.|+
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 8777664
No 241
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.26 E-value=5e-06 Score=50.49 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=44.7
Q ss_pred CCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG 237 (261)
Q Consensus 159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G 237 (261)
.|.++.+ ..|+.+.|.|.+ .|.|.+ -+.|+++....... .......|.|.+ +.+.|.| .|.|.|.+|
T Consensus 4 ~P~~~~v--~~G~~v~l~C~a---~G~P~P~~I~W~k~g~~l~~~---~~~~~s~L~i~~--~~d~g~Y--~C~A~N~~G 71 (81)
T cd05749 4 EPEDLSV--TANTPFNLTCQA---VGPPEPVEILWWQGGSPLGDP---PAPSPSVLNVPG--LNETSKF--SCEAHNAKG 71 (81)
T ss_pred CCCceEE--cCCCCEEEEEEe---eeecCCeEEEEEECCEECCCC---CCCCCCEEEEcc--ccCCeEE--EEEEEeccC
Confidence 3455444 459999999997 555544 24444443221110 122346899988 7888989 999999999
Q ss_pred cC
Q psy11549 238 RS 239 (261)
Q Consensus 238 ~~ 239 (261)
..
T Consensus 72 ~~ 73 (81)
T cd05749 72 VT 73 (81)
T ss_pred cE
Confidence 54
No 242
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.26 E-value=1.8e-05 Score=50.53 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=45.2
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEcCCcc-c-----ccc----------CCceEEeCCceeEEEEecCCCCcCeEEE
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGE-T-----LDV----------GSERFSSGSRGSMLRYTPVTELDYGTLS 133 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~-~-----~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 133 (261)
.+.+|+++.|.|...... ...+.|++..... . ... ...+..... ..+|.|.++..+|+|.|+
T Consensus 9 ~~~~G~~V~L~v~~~p~~-~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 9 QVAEGENVLLLVHNLPEN-LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred cccCCCCEEEEecCCCCC-ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCcccCEEEE
Confidence 456899999999754332 2379999853211 0 000 011112211 237999999999999999
Q ss_pred EEEEcCCc
Q psy11549 134 CAAQNAIG 141 (261)
Q Consensus 134 C~~~~~~~ 141 (261)
|.+.+...
T Consensus 87 ~~v~~~~~ 94 (105)
T cd05774 87 LQTITTNF 94 (105)
T ss_pred EEEEeCCc
Confidence 99998763
No 243
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.25 E-value=5.5e-06 Score=51.71 Aligned_cols=74 Identities=8% Similarity=-0.070 Sum_probs=49.5
Q ss_pred cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC-CCcCCceeeeee
Q psy11549 169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA-KGRSLPVIWDDF 247 (261)
Q Consensus 169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~-~G~~~~s~~~~~ 247 (261)
.|+.++|.|.. ......| .+++++................|.|.+++.+++|.| +|.+.|. .+++..|.++++
T Consensus 15 ~G~~VtL~C~~---~~~~~~f-~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y--~C~~~~~~~~~S~~Sd~lel 88 (91)
T cd05751 15 LGKPVTLRCQG---PYGAVEY-RLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRY--RCYYRSGVALWSEPSDPLEL 88 (91)
T ss_pred CCCcEEEEEec---CCCCCEE-EEEECCCCccccccCCCceeEEEEccCCChhHCEEE--EEEEECCCCccCCCCCcEEE
Confidence 59999999996 2223444 444444332211111223346799999999999999 8888887 678899998876
Q ss_pred e
Q psy11549 248 S 248 (261)
Q Consensus 248 ~ 248 (261)
.
T Consensus 89 ~ 89 (91)
T cd05751 89 V 89 (91)
T ss_pred E
Confidence 5
No 244
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.24 E-value=1.6e-05 Score=52.15 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=49.3
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe----CCceeEEEEecCCCCcCeEEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS----GSRGSMLRYTPVTELDYGTLS 133 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~ 133 (261)
+.+..|++++|.|..........+.|++...+.... ....++.. ......|.|.++..+|+|.|.
T Consensus 9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~ 88 (116)
T cd07706 9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF 88 (116)
T ss_pred eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence 668899999999998764333379999753322110 11233432 234668999999999999999
Q ss_pred EEEEcC
Q psy11549 134 CAAQNA 139 (261)
Q Consensus 134 C~~~~~ 139 (261)
|.+...
T Consensus 89 C~~~~~ 94 (116)
T cd07706 89 CALSTL 94 (116)
T ss_pred EEEECC
Confidence 999853
No 245
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.23 E-value=7.6e-06 Score=52.04 Aligned_cols=36 Identities=31% Similarity=0.592 Sum_probs=29.7
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRV 55 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V 55 (261)
+.+|+|.+++.+|+|.|.|.+.+. .|.. +..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEEe
Confidence 568999999999999999999884 4544 66777776
No 246
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.22 E-value=2.7e-05 Score=50.73 Aligned_cols=70 Identities=24% Similarity=0.381 Sum_probs=47.5
Q ss_pred EEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccc--c---CC-----------ceE--E--eCCceeEEEEecCCCC
Q psy11549 69 VGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLD--V---GS-----------ERF--S--SGSRGSMLRYTPVTEL 127 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~--~---~~-----------~~~--~--~~~~~~~l~i~~~~~~ 127 (261)
+.+..|+++.|.|... ..... .+.|++...+.... . .. .++ . .......|.|.++..+
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 11 VTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred EEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 6788999999999999 22333 79999844311100 0 00 011 1 1233568999999999
Q ss_pred cCeEEEEEEEcC
Q psy11549 128 DYGTLSCAAQNA 139 (261)
Q Consensus 128 d~g~y~C~~~~~ 139 (261)
|+|.|.|.+...
T Consensus 90 DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 90 DSGTYFCQVSTS 101 (114)
T ss_dssp GEEEEEEEEEES
T ss_pred cCEEEEEEEEEC
Confidence 999999999876
No 247
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.22 E-value=1e-05 Score=52.17 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=46.1
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEcCCcc---ccc----------------cCCceEE----eCCceeEEEEecCCC
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGE---TLD----------------VGSERFS----SGSRGSMLRYTPVTE 126 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~---~~~----------------~~~~~~~----~~~~~~~l~i~~~~~ 126 (261)
.+..|++++|.|.+........+.|++...+. .+. ....++. .......|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998764433379999764431 100 0012332 123345799999999
Q ss_pred CcCeEEEEEEEc
Q psy11549 127 LDYGTLSCAAQN 138 (261)
Q Consensus 127 ~d~g~y~C~~~~ 138 (261)
+|+|.|.|....
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
No 248
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.21 E-value=2.1e-05 Score=49.99 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=43.7
Q ss_pred cEEEEEEEeeCC--CCceeEEEEcCCcc-c--cc---c-----------CCceEEe--CCceeEEEEecCCCCcCeEEEE
Q psy11549 76 SVDIHCAVEADP--PARSFKWKFNNSGE-T--LD---V-----------GSERFSS--GSRGSMLRYTPVTELDYGTLSC 134 (261)
Q Consensus 76 ~~~l~C~~~~~~--~~~~~~W~~~~~~~-~--~~---~-----------~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C 134 (261)
+++|+|...... ....+.|++...+. . +. . ...++.. ......|.|.++..+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999887544 12379998743221 0 00 0 0111221 2235689999999999999999
Q ss_pred EEEc-CCceEEe
Q psy11549 135 AAQN-AIGTQVT 145 (261)
Q Consensus 135 ~~~~-~~~~~~~ 145 (261)
.+.+ +.|..+.
T Consensus 82 ~v~~~p~g~~~~ 93 (100)
T cd05888 82 RVITFPAGNFEA 93 (100)
T ss_pred EEEeCCCCCeee
Confidence 9987 5555433
No 249
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.20 E-value=9.4e-06 Score=51.50 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=48.4
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc----------ccCCceEEe----CCceeEEEEecCCCCcCeEEEE
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL----------DVGSERFSS----GSRGSMLRYTPVTELDYGTLSC 134 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----------~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C 134 (261)
+.+..|++++|.|..........+.|++...+... .....++.. ......|.|.++..+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 45679999999999875433337999976432110 011122322 2345689999999999999999
Q ss_pred EEEcCC
Q psy11549 135 AAQNAI 140 (261)
Q Consensus 135 ~~~~~~ 140 (261)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988754
No 250
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.20 E-value=3.4e-06 Score=48.35 Aligned_cols=42 Identities=36% Similarity=0.641 Sum_probs=31.4
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCC
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG 44 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~ 44 (261)
+|||..+. ........+..|.|.+++.+|+|.|+|.+.|..|
T Consensus 22 ~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 22 LKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 35666665 2333444567999999999999999999988654
No 251
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.20 E-value=1.4e-05 Score=48.15 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=42.7
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceE-E---eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERF-S---SGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
+.|.|.+.+..|+..|.|++++.... ...... . .....+.|.+..-..+|...|+|+|.|+.-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~--~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELT--GKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECc--CcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 68999999887766999999874321 111100 1 112355788877777888899999998653
No 252
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.20 E-value=1.7e-05 Score=49.48 Aligned_cols=67 Identities=6% Similarity=-0.021 Sum_probs=45.8
Q ss_pred ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcc--c-eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549 168 ETTSSVHISCTPGYDGGLPQT-FTLELYSASDL--N-LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~ 239 (261)
..|..+.|.|.+ +.+.|.. |.|. ++.... . ..-......++.|.+.++...|.|+| .|.|.|.+...
T Consensus 16 ~eG~~~~L~C~p--P~g~P~p~~~W~-k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y--~C~A~n~~~~~ 86 (96)
T cd05727 16 KEGWGVVLFCDP--PPHYPDLSYRWL-LNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNY--SCFVSSPSSTK 86 (96)
T ss_pred eeCCcEEEeeCC--CCCCCCCEEEEE-ECCcccccccCCCeEEeCCCCcEEEeecCHhhCcee--EEEEEecccCC
Confidence 459999999997 5666654 5554 442221 1 01122233468999999999999999 99999998643
No 253
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.18 E-value=1.3e-05 Score=48.36 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=40.8
Q ss_pred CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549 160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA 235 (261)
Q Consensus 160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~ 235 (261)
|....+. .|+.++|.|.+ .+......+.|+++.... ......|.|.++ .+++|.| +|.|.|.
T Consensus 7 P~~~~v~--~G~~V~L~C~~--~~~p~~~~~~W~kng~~l-------~~~~~~l~i~~~-~~dsG~Y--~C~a~~~ 68 (78)
T cd05752 7 PPWTTIF--QGEKVTLTCNG--FNSPEQNSTQWYHNGKLL-------ETTTNSYRIRAA-NNDSGEY--RCQTQGS 68 (78)
T ss_pred CCCeEee--CCCCEEEEEeC--CCCCCCccEEEEECCEEe-------eccCCeEEEeec-ccCCEEe--EEECCCC
Confidence 3334443 49999999997 332223334555554221 123478999999 9999999 9999875
No 254
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.17 E-value=6.5e-06 Score=51.65 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.7
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.+|.|.+++.+|+|.|+|.+...... +..+.|+|
T Consensus 62 ~~L~I~nV~~~D~G~YtC~~~t~~~~--~~~~~~~v 95 (95)
T cd05882 62 LIISISNVQLSDEGEYTCSIFTMPVR--TAKATVTV 95 (95)
T ss_pred EEEEECCCCcccCEEEEEEEEeeccc--cEEEEEEC
Confidence 48999999999999999999874322 34445543
No 255
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.15 E-value=5.6e-06 Score=53.94 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=28.6
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLR 54 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~ 54 (261)
.+.+|.|.+++.+|.|.|+|.+.|..+.. ....+.|.
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 45699999999999999999999887643 23345554
No 256
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.14 E-value=4.2e-05 Score=48.11 Aligned_cols=78 Identities=8% Similarity=-0.022 Sum_probs=48.3
Q ss_pred eEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCc---cceeEEEe-----cCCCCcEEEcCCCCCC-ccEEEEEEEEE
Q psy11549 164 SVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASD---LNLLVNLT-----NLDTPAFTLEDLGLDG-TVLMRVVISGV 233 (261)
Q Consensus 164 ~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~i~~~~l~~-~~~Y~~~~~a~ 233 (261)
......|+.+.|.|.+ ...+++ ...|.|+...- ....+.+. ....+.|+|.++...+ .|.| .|.|.
T Consensus 10 s~~~~~G~~~~L~C~~--~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y--~C~a~ 85 (98)
T cd05898 10 VQYAVRGERGKVKCFI--GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY--NCTAW 85 (98)
T ss_pred eEEEeCCCcEEEEEEE--ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE--EEEEE
Confidence 3444679999999997 333333 34555543211 11123111 1345789999965556 5799 99999
Q ss_pred cCCCcCCceeee
Q psy11549 234 NAKGRSLPVIWD 245 (261)
Q Consensus 234 N~~G~~~~s~~~ 245 (261)
|.+|.......+
T Consensus 86 N~~G~d~~~i~L 97 (98)
T cd05898 86 NSFGSGTAIIQL 97 (98)
T ss_pred eCCccceEEEEe
Confidence 999987655443
No 257
>PHA03376 BARF1; Provisional
Probab=98.10 E-value=3.2e-05 Score=53.44 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=46.7
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS 99 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~ 99 (261)
+|.|.+++.+|.|.|+|......... ...-.|.+..+-...... ........+.-.+.|...+.|.| .++|.-+..
T Consensus 88 sLvI~~l~lSDdGtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a-~~~dFp~~~~~~i~C~sggfP~P-~~~Wle~~~ 163 (221)
T PHA03376 88 FLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHS-ERSQFPDFSVLTVTCTVNAFPHP-HVQWLMPEG 163 (221)
T ss_pred EEEEEeeeecCCceEEEEEEcCCCce-eeeeeeeeeecceEEEEe-ccccCCCCCeeEEEEecCCcCCc-hheeccccC
Confidence 89999999999999999997765332 222334332211111000 00011234556889997788888 899987653
No 258
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.09 E-value=9.6e-06 Score=51.26 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=31.8
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.+|+|.+++.+|+|.|.|.+.+..+......+.|.|
T Consensus 61 ~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 61 YSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred eeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 699999999999999999999888877677777776
No 259
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.08 E-value=0.00011 Score=44.44 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=45.0
Q ss_pred EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
.+..|++++|.|.....+. ...++|...++. .. .........|.+..+...|+|.++|.+...
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~-~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK-SK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCc-cc------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 4568999999999966433 237999865532 11 111223447999999999999999999764
No 260
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.07 E-value=1.3e-05 Score=51.80 Aligned_cols=38 Identities=24% Similarity=0.532 Sum_probs=31.8
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
.+.+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 35699999999999999999998887665 667777775
No 261
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.07 E-value=7.7e-05 Score=49.13 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=47.9
Q ss_pred EEeeCCCcEEEEEEEeeCC-----CCceeEEEEcCCcc---ccc-----------cCCceEEe----CCceeEEEEecCC
Q psy11549 69 VGASRSESVDIHCAVEADP-----PARSFKWKFNNSGE---TLD-----------VGSERFSS----GSRGSMLRYTPVT 125 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~---~~~-----------~~~~~~~~----~~~~~~l~i~~~~ 125 (261)
+.+..|+.++|+|...... ....+.|++...+. .+. ....++.. ......|.|.++.
T Consensus 9 v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~ 88 (119)
T cd05712 9 VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ 88 (119)
T ss_pred EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC
Confidence 6788999999999876432 12369999764332 100 00123332 3445689999999
Q ss_pred CCcCeEEEEEEEcC
Q psy11549 126 ELDYGTLSCAAQNA 139 (261)
Q Consensus 126 ~~d~g~y~C~~~~~ 139 (261)
.+|+|.|.|.+...
T Consensus 89 ~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 89 PEDSGKYFFRVELG 102 (119)
T ss_pred hhhCeEEEEEEEcC
Confidence 99999999998764
No 262
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.07 E-value=1.9e-05 Score=50.07 Aligned_cols=36 Identities=17% Similarity=0.411 Sum_probs=28.8
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRV 55 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V 55 (261)
+.+|+|.+++.+|+|.|.|.+... .|.. ...+.|.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~-~~~~~l~V 97 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNR-QKVTTLTV 97 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcE-EEEEEEEe
Confidence 469999999999999999998764 4544 56667766
No 263
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.06 E-value=2.9e-05 Score=48.82 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=44.9
Q ss_pred eeCCCcEEEEEEEeeCCCCce--eEEEEcCCccccccCCceEE-----eCCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 71 ASRSESVDIHCAVEADPPARS--FKWKFNNSGETLDVGSERFS-----SGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~~~~--~~W~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
+.+|+.++|.|.+.+..+... +.||+++... ....+. .......+.+.....+|...|+|+|.+....
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l----~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETL----SRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEc----ccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 569999999999998766545 7999977421 111111 1223446676655555566999999986544
No 264
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.06 E-value=1.6e-05 Score=49.84 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=30.3
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.+.+|.|.+++.+|+|.|+|.+.+........+.+|.|
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 36799999999999999999987664333367777776
No 265
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.06 E-value=1.6e-05 Score=50.05 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=43.4
Q ss_pred CCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEe--CCc---eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 73 RSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSS--GSR---GSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 73 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
.|+.+.|.|.+.+. |....+.|++++.............. .+. .+.|.+......+.+.|+|.|.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 68899999999998 44558999998743221110011111 111 22455555555689999999998654
No 266
>PHA02633 hypothetical protein; Provisional
Probab=98.05 E-value=2.1e-05 Score=43.62 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=31.4
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~ 58 (261)
.+..|+|.++..+|+|.|.|+.+|..-.. ..++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeec
Confidence 45689999999999999999998775444 45677777543
No 267
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.04 E-value=8.4e-05 Score=51.57 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=47.4
Q ss_pred EEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccc-cC--------CceEE---eCCceeEEEEecCCCCcCeEEEEE
Q psy11549 69 VGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLD-VG--------SERFS---SGSRGSMLRYTPVTELDYGTLSCA 135 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~-~~--------~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~ 135 (261)
+.+.+|++++|.|... +...+ .+.|.+..+....- .. ..++. .....+.|.|.++..+|+|.|+|.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSI-LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccc-eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 6788999999999985 43344 79998864311110 00 01222 123456899999999999999999
Q ss_pred EEcC
Q psy11549 136 AQNA 139 (261)
Q Consensus 136 ~~~~ 139 (261)
+..-
T Consensus 104 F~tf 107 (189)
T PHA02987 104 FNTL 107 (189)
T ss_pred EEec
Confidence 8653
No 268
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.03 E-value=1.6e-05 Score=48.43 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=30.4
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeC
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINT 42 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~ 42 (261)
++||.+|..+ . +....+..|.|.+++.+|+|.|.|.+.-.
T Consensus 30 ~~ng~~l~~~-~-r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 30 LFNGTPLNAQ-F-SYRVGTDGLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred EECCcccCCC-c-ceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence 3688888654 3 44445556889999999999999998643
No 269
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.02 E-value=1.3e-05 Score=48.20 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=34.2
Q ss_pred CCCCeeccCCCC----ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549 1 MAGGIPLAHNTS----ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA 46 (261)
Q Consensus 1 ~~ng~~l~~~~~----~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 46 (261)
||||++|.+... .......++|.|.....+|.+.|+|.|.|..+..
T Consensus 20 ~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 20 YRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999975321 1111223479999999999999999999998764
No 270
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.02 E-value=0.00026 Score=43.71 Aligned_cols=83 Identities=25% Similarity=0.280 Sum_probs=58.4
Q ss_pred CCCCcceEEeecCCeEEEEeecCCCC-CCCeEEEEEEEeCCccceeE-EEec--CCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549 158 QPPQNCSVRNETTSSVHISCTPGYDG-GLPQTFTLELYSASDLNLLV-NLTN--LDTPAFTLEDLGLDGTVLMRVVISGV 233 (261)
Q Consensus 158 ~~p~~~~v~~~~~~~~~l~c~~~~~~-~~p~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~~~l~~~~~Y~~~~~a~ 233 (261)
.+|.++.+.......+.|.|.++... +....|.+.+...... .+ .... .....+.|.+ |.+++.|.|++.|.
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~--~~~~~~~~~~~~~~~~i~~--l~p~~~Y~~~v~a~ 77 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSG--DWKEVEVTPGSETSYTLTG--LKPGTEYEFRVRAV 77 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCC--CCEEeeccCCcccEEEEcc--ccCCCEEEEEEEEE
Confidence 35555666666679999999974332 2345588887765422 22 2222 2567889999 99999999999999
Q ss_pred cCCCcCCceee
Q psy11549 234 NAKGRSLPVIW 244 (261)
Q Consensus 234 N~~G~~~~s~~ 244 (261)
+..|.+.++..
T Consensus 78 ~~~~~~~~s~~ 88 (93)
T cd00063 78 NGGGESPPSES 88 (93)
T ss_pred CCCccCCCccc
Confidence 99888877663
No 271
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.02 E-value=1.2e-05 Score=51.75 Aligned_cols=37 Identities=24% Similarity=0.605 Sum_probs=31.4
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
+.+|+|.+++.+|+|.|.|.+.+..+.. +..+.|.|.
T Consensus 67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~~-~~~v~L~V~ 103 (106)
T cd05714 67 DASLVITDLRLEDSGRYRCEVIDGIEDE-QDTVELEVR 103 (106)
T ss_pred cceEEECCCCHHHCEEEEEEEEcCCCce-EEEEEEEEE
Confidence 4699999999999999999999876654 677788775
No 272
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.02 E-value=3.7e-05 Score=47.90 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=45.6
Q ss_pred EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCc-cceeEEEecCCCCcEEEcCCCCCCcc-EEEEEEEEEcCCCc
Q psy11549 166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASD-LNLLVNLTNLDTPAFTLEDLGLDGTV-LMRVVISGVNAKGR 238 (261)
Q Consensus 166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~-~Y~~~~~a~N~~G~ 238 (261)
....|..+.|.|.+ +.+.|..-+.|+..... ....-.+....++.|.|.++...|.| .| .|.|.|.+..
T Consensus 14 ~V~eG~~~~L~C~p--P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y--~C~a~~~~~~ 84 (95)
T cd05845 14 EVEEGDSVVLPCNP--PKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDY--ICHAHFPGLR 84 (95)
T ss_pred EEecCCCEEEEecC--CCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCe--EEEEEccccc
Confidence 33559999999986 46666443344433211 11111333345689999999999999 79 9999999753
No 273
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.01 E-value=5.4e-05 Score=48.53 Aligned_cols=67 Identities=24% Similarity=0.452 Sum_probs=45.5
Q ss_pred eeCCCcEEEEEEEeeCCCCceeEEEEcCCc--ccc----ccC-------------CceEE--eCCceeEEEEecCCCCcC
Q psy11549 71 ASRSESVDIHCAVEADPPARSFKWKFNNSG--ETL----DVG-------------SERFS--SGSRGSMLRYTPVTELDY 129 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~~----~~~-------------~~~~~--~~~~~~~l~i~~~~~~d~ 129 (261)
+..|++++|.|.+...... .+.|++...+ ... ... ..++. .......|.|.++..+|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 5689999999988655333 6999986543 111 000 11232 233556799999999999
Q ss_pred eEEEEEEEc
Q psy11549 130 GTLSCAAQN 138 (261)
Q Consensus 130 g~y~C~~~~ 138 (261)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999764
No 274
>smart00409 IG Immunoglobulin.
Probab=98.00 E-value=3.2e-05 Score=47.24 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=34.9
Q ss_pred CeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 4 GIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 4 g~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+.++...+. ...... .+|.|.+++.+|+|.|+|.+.+..+... ..+.|.|
T Consensus 33 ~~~v~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~l~V 85 (86)
T smart00409 33 GKLLAESGR-FSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTTLTV 85 (86)
T ss_pred CEEcCCCCc-EEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEEEEE
Confidence 566643322 333333 5899999999999999999998777663 3366655
No 275
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.00 E-value=3.2e-05 Score=47.24 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=34.9
Q ss_pred CeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 4 GIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 4 g~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+.++...+. ...... .+|.|.+++.+|+|.|+|.+.+..+... ..+.|.|
T Consensus 33 ~~~v~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~l~V 85 (86)
T smart00410 33 GKLLAESGR-FSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTTLTV 85 (86)
T ss_pred CEEcCCCCc-EEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEEEEE
Confidence 566643322 333333 5899999999999999999998777663 3366655
No 276
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.99 E-value=1.8e-05 Score=51.23 Aligned_cols=38 Identities=21% Similarity=0.546 Sum_probs=29.9
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
.+.+|+|.+++.+|+|.|+|.+....... +..+.|.|.
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDN-YDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence 35699999999999999999998665444 555666664
No 277
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.99 E-value=6.4e-05 Score=48.55 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=40.3
Q ss_pred eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCc------eeEEEEecCCCCcCe-EEEEEEEcCC
Q psy11549 71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSR------GSMLRYTPVTELDYG-TLSCAAQNAI 140 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g-~y~C~~~~~~ 140 (261)
...|+.++|.|.+.+..+ ..++.|++++.... ..........+ .+.|.+.. ...|.+ .|+|.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~--~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS--AEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc--ccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 447888999999998766 46899999885322 11111111111 22344443 334434 5999999864
No 278
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.98 E-value=0.00013 Score=44.61 Aligned_cols=63 Identities=16% Similarity=0.356 Sum_probs=39.6
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCc------eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR------GSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
+.|.|.+.+..|+..|.|++++.. +............ .+.|.+.....++...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~--l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQE--LEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEE--CCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999998855459999998742 2111111111111 23455555566677899999998754
No 279
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.97 E-value=1.6e-05 Score=50.62 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=29.0
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.+|+|.+++.+|+|.|+|.+.+..+.. ...+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence 489999999999999999999876653 56666665
No 280
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.95 E-value=9.5e-06 Score=49.18 Aligned_cols=35 Identities=34% Similarity=0.620 Sum_probs=29.0
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.|.|.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus 46 ~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 46 GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 48889999999999999999977665567777765
No 281
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.95 E-value=0.00011 Score=45.97 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=43.6
Q ss_pred CcEEEEEEEeeCCCCceeEEEEcCCcc--cccc----CC--------ceEEeC---CceeEEEEecCCCCcCeEEEEEEE
Q psy11549 75 ESVDIHCAVEADPPARSFKWKFNNSGE--TLDV----GS--------ERFSSG---SRGSMLRYTPVTELDYGTLSCAAQ 137 (261)
Q Consensus 75 ~~~~l~C~~~~~~~~~~~~W~~~~~~~--~~~~----~~--------~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~ 137 (261)
++++|.|..........+.|.+...+. .+-. .+ .+.... ....+|.|.+++.+|.|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 367899988654444478898753211 1100 00 122221 235689999999999999999986
Q ss_pred c-CCceEEe
Q psy11549 138 N-AIGTQVT 145 (261)
Q Consensus 138 ~-~~~~~~~ 145 (261)
. +.|....
T Consensus 81 t~P~g~~~~ 89 (96)
T cd05889 81 TYPQGSWEK 89 (96)
T ss_pred eCCCCCeEE
Confidence 5 4555444
No 282
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.94 E-value=5.5e-05 Score=47.41 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=23.4
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCC
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKG 44 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~ 44 (261)
.+.+|.|.+++.+|+|.|+|.......
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~ 84 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQ 84 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCC
Confidence 357999999999999999999977643
No 283
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.93 E-value=0.0002 Score=45.01 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=42.1
Q ss_pred EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCC-------c---cceeEEEe--cCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549 165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSAS-------D---LNLLVNLT--NLDTPAFTLEDLGLDGTVLMRVVISG 232 (261)
Q Consensus 165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~-------~---~~~~~~~~--~~~~~~~~i~~~~l~~~~~Y~~~~~a 232 (261)
+....|+.+.|.|.. .+.|..++.|++... . ...++... ......|.|.+++.+|.|.| .|.+
T Consensus 7 v~v~eG~~v~L~C~~---~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y--~C~~ 81 (95)
T cd07701 7 VTVVEGGTANLTCRV---DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQY--TCSL 81 (95)
T ss_pred EEEecCCcEEEEEEE---ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEE--EEEe
Confidence 444569999999997 344555555653211 0 01122221 12346789999999999999 8888
Q ss_pred EcCC
Q psy11549 233 VNAK 236 (261)
Q Consensus 233 ~N~~ 236 (261)
.+..
T Consensus 82 ~t~~ 85 (95)
T cd07701 82 FTMP 85 (95)
T ss_pred Eeec
Confidence 7743
No 284
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.93 E-value=2.5e-05 Score=50.55 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~ 57 (261)
+.+|+|.+++.+|+|.|.|.+....... ...+.|.|..
T Consensus 71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~-~~~v~l~V~g 108 (110)
T cd05878 71 DASLEISRLRSSDSGVYRCEVMHGIEDE-QDTVPLEVTG 108 (110)
T ss_pred cEEEEECCCChhhCEEEEEEEEeCCCcc-eEEEEEEEEE
Confidence 3589999999999999999998765444 5667777753
No 285
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.92 E-value=2.4e-05 Score=50.38 Aligned_cols=36 Identities=28% Similarity=0.545 Sum_probs=30.7
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
.+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|.
T Consensus 68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 68 ASLVITDLRLEDYGRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEccCChHHCEEEEEEEEecccce-EEEEEEEEE
Confidence 489999999999999999998877765 667777775
No 286
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.86 E-value=2.4e-05 Score=50.38 Aligned_cols=37 Identities=30% Similarity=0.582 Sum_probs=29.9
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
+.+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~ 107 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVT 107 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence 4599999999999999999998865433 566777775
No 287
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.86 E-value=0.00018 Score=43.86 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=38.4
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe-CC----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS-GS----RGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
+.|.|.+.+..|+.++.|++++.. +......... .+ ..+.|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~--l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKE--LKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEE--ccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 589999988744449999998743 2111111111 11 1234555555556677999999987543
No 288
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.81 E-value=0.00012 Score=44.68 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=40.1
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCce-EEe-C----CceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSER-FSS-G----SRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~-~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
++|.|.+.+..|+..+.|++++.. +...... ... . ...+.|.+.....++...|+|.+.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~--l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKE--IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEE--CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999998776679999998753 2111100 001 1 1233566665556677799999998643
No 289
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.75 E-value=0.00014 Score=42.42 Aligned_cols=63 Identities=29% Similarity=0.416 Sum_probs=41.8
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccC---CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVG---SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
+.|.|.+.+.+.. .+.|++.+........ ............|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPP-TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCC-cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4688999884444 8999987643221110 0011123345579999999999999999998765
No 290
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.74 E-value=7.8e-05 Score=47.14 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=29.6
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.+.+|.|.+++.+|+|.|+|..........+..+.|+|
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 34689999999999999999986554333366777776
No 291
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.73 E-value=0.01 Score=47.47 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=53.1
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCC-c-ceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKG-E-ATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF 96 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~-~-~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~ 96 (261)
.|.|.+++..+.|.|+=+..+... . .....++|.+..+|.+.... -.+..|++-.-.|.+....+ ...+.|+.
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 699999999999999855543332 2 22345555555666444322 33669999999999987655 34699999
Q ss_pred cCCc
Q psy11549 97 NNSG 100 (261)
Q Consensus 97 ~~~~ 100 (261)
++..
T Consensus 367 ng~~ 370 (566)
T PHA03269 367 NFGN 370 (566)
T ss_pred CCcc
Confidence 8643
No 292
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.73 E-value=0.00014 Score=41.96 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=35.0
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEE-ecCCCC---cEEEcCCCCCCccEEEEEEEE
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNL-TNLDTP---AFTLEDLGLDGTVLMRVVISG 232 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~~~~l~~~~~Y~~~~~a 232 (261)
|+.++|.|.+ .....+..+.|++............ ...... .|.|.+++.+|+|.| .|.|
T Consensus 1 G~~v~L~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSV-SSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTY--TCVV 64 (64)
T ss_dssp TSEEEEEEEE-EESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEE--EEEE
T ss_pred CCeEEEEeec-CCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEE--EEEC
Confidence 6789999997 2233334455554433333222222 222211 299999999999999 6654
No 293
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.70 E-value=8.9e-05 Score=45.23 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=33.7
Q ss_pred CCCCeeccCCCCceEEEEC-------CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSN-------QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLR 54 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~-------~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~ 54 (261)
||||++|...........+ +.|.|.....+|.|.|+|.|.|..... ...++.|.
T Consensus 20 ~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 20 FRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 5788888532211222222 368888888889999999998876443 23344443
No 294
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.70 E-value=0.024 Score=55.12 Aligned_cols=201 Identities=12% Similarity=0.120 Sum_probs=110.9
Q ss_pred CCCCCCEeEEE--EEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc
Q psy11549 27 VSRQSAGTYKC--SAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD 104 (261)
Q Consensus 27 ~~~~D~G~Y~C--~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~ 104 (261)
.+..++|.|+- .|.|..+.. +.+..+.|..+............+..|+.+.|.+.+...+.. .+.|...+......
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~-~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~V-tf~w~fGdgs~~~~ 1911 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGK-SASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAV-NFRLQIGGAAPEVL 1911 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcc-eeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCce-EEEEEeCCCCceee
Confidence 46789999977 567887665 456677777665433222222456789999999988877754 89998765321111
Q ss_pred cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCC---CcceEEeecCCeEEEEeecCC
Q psy11549 105 VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP---QNCSVRNETTSSVHISCTPGY 181 (261)
Q Consensus 105 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p---~~~~v~~~~~~~~~l~c~~~~ 181 (261)
-.... +. ..-..-.....+..+.|..+..... +.+.|..+...- ..+......|....+.-..
T Consensus 1912 t~~~t---------~~-HsY~~~G~Y~VtV~A~N~Vs~~~a~--~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v-- 1977 (2740)
T TIGR00864 1912 QPGPR---------FS-HSFPRVDDHMVNLRAKNEVSCAQAN--LHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANV-- 1977 (2740)
T ss_pred cCCCe---------EE-eecCCCCcEEEEEEEEeccceeeee--EEEEEEEeccceEecCCcccceecCceEEEEEEE--
Confidence 01111 11 1112223345566677877776553 334443332211 1111001235555555444
Q ss_pred CCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549 182 DGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS 248 (261)
Q Consensus 182 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~ 248 (261)
..+.|..|.|.+................+-.+. ....|.|++++.|.|.+|.......+++.
T Consensus 1978 ~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864 1978 QRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred ecCCceEEEEEeeecccCCCcceeecCCceEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEE
Confidence 577888888876533211101111112222222 45689999999999999987655555554
No 295
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.68 E-value=0.00014 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEccCCCCCCEeEEEEEEeCC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTK 43 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~ 43 (261)
+|.|.+++.+|+|.|+|.+....
T Consensus 63 tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 63 RVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred EEEECcCCcccCEEEEEEEEccc
Confidence 79999999999999999997654
No 296
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.67 E-value=0.00056 Score=44.83 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=45.8
Q ss_pred EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----c------------CCceEEeC----CceeEEEEecCCCC
Q psy11549 69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----V------------GSERFSSG----SRGSMLRYTPVTEL 127 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----~------------~~~~~~~~----~~~~~l~i~~~~~~ 127 (261)
..+..|++++|.|...... ....+.||+-..+.... . ...++... .....|.|.++..+
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 5678999999999876443 12269999754322110 0 01223221 22347999999999
Q ss_pred cCeEEEEEEEc
Q psy11549 128 DYGTLSCAAQN 138 (261)
Q Consensus 128 d~g~y~C~~~~ 138 (261)
|+|.|.|.+..
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999999864
No 297
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.62 E-value=0.0017 Score=38.70 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=45.8
Q ss_pred CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-eeE-E-EecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549 160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLV-N-LTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK 236 (261)
Q Consensus 160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~ 236 (261)
|..+.+.......+.++|.++...+. ..|.+.+....... ..+ . ........+.|.+ |.++..|.|++.|.+..
T Consensus 4 p~~~~~~~~~~~~~~v~W~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~~~~~Y~v~v~a~~~~ 80 (83)
T smart00060 4 PSNLRVTDVTSTSVTLSWEPPPDDGI-TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTG--LKPGTEYEFRVRAVNGA 80 (83)
T ss_pred CCcEEEEEEeCCEEEEEECCCCCCCC-CccEEEEEEEEecCCCccEEEEecCCccEEEEeC--cCCCCEEEEEEEEEccc
Confidence 44455555556689999996433321 33444444322110 012 1 1112247899999 99999999999999986
Q ss_pred Cc
Q psy11549 237 GR 238 (261)
Q Consensus 237 G~ 238 (261)
|.
T Consensus 81 g~ 82 (83)
T smart00060 81 GE 82 (83)
T ss_pred CC
Confidence 64
No 298
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.62 E-value=8.7e-05 Score=48.49 Aligned_cols=37 Identities=24% Similarity=0.515 Sum_probs=28.1
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRV 55 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V 55 (261)
+.+|.|.+++.+|+|.|+|.+.|..+.. ....+.|.|
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 4589999999999999999998876642 134455543
No 299
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.61 E-value=0.00072 Score=41.89 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
|+.+.|.|.+.+..|+..+.|+.++................ ..+.|.+..-..++...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 67999999877665555999998875331000011111111 134577766556677799999998654
No 300
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.61 E-value=0.00077 Score=42.17 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=38.8
Q ss_pred CCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-C-ceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 74 SESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-S-RGSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 74 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~-~~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
++.++|.|.+.+..+ ...+.|.+++..............+ + .........+...+...|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 678999999999754 5589999987311111111111211 1 11112222334457789999998754
No 301
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.61 E-value=0.00067 Score=40.52 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=36.8
Q ss_pred EEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-Cc----eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 77 VDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-SR----GSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 77 ~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
++|.|.+.+..| ...+.|++++..............+ ++ .+.|.+.....++...|+|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 689999999754 3589999987421110001111111 11 234555554556777999999865
No 302
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.58 E-value=0.00011 Score=48.07 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=27.0
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLR 54 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~ 54 (261)
.+|+|.+++.+|+|.|+|.+.+..+... ...+.|.
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 5899999999999999999988766431 2345554
No 303
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.55 E-value=0.0006 Score=41.25 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=37.7
Q ss_pred cEEEEEEEeeCCCC-ceeEEEEcCCcccc----c-----------cCCceEEe--C--CceeEEEEecCCCCcCeEEEEE
Q psy11549 76 SVDIHCAVEADPPA-RSFKWKFNNSGETL----D-----------VGSERFSS--G--SRGSMLRYTPVTELDYGTLSCA 135 (261)
Q Consensus 76 ~~~l~C~~~~~~~~-~~~~W~~~~~~~~~----~-----------~~~~~~~~--~--~~~~~l~i~~~~~~d~g~y~C~ 135 (261)
++.|.|.+.....+ ..+.|++...+... . ....++.. . .....|.|.++..+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36788987765432 36888875431110 0 01122222 1 4456899999999999999996
Q ss_pred E
Q psy11549 136 A 136 (261)
Q Consensus 136 ~ 136 (261)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 304
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.54 E-value=0.0005 Score=43.09 Aligned_cols=74 Identities=12% Similarity=0.003 Sum_probs=46.6
Q ss_pred cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--E-EecCCCCcEEEcCCCCCCccEEEEEEEE---EcCCCcCCce
Q psy11549 169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--N-LTNLDTPAFTLEDLGLDGTVLMRVVISG---VNAKGRSLPV 242 (261)
Q Consensus 169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a---~N~~G~~~~s 242 (261)
.|+.++|.|... . ....| .|++......... . ........|.|..++..++|.| +|.. .++..++++|
T Consensus 14 ~G~~VTL~C~~~--~-~~~~f-~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y--~C~~~~~~~~~~wS~~S 87 (94)
T cd05711 14 SGENVTLQCHSD--I-RFDRF-ILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTY--RCYGSYNHSLYEWSAPS 87 (94)
T ss_pred CCCeEEEEEecC--C-CCCEE-EEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEE--EEEEECCCCCccccCCC
Confidence 599999999852 1 11234 4455443332111 0 0112235789999999999999 6654 3456799999
Q ss_pred eeeeee
Q psy11549 243 IWDDFS 248 (261)
Q Consensus 243 ~~~~~~ 248 (261)
.++++.
T Consensus 88 dpl~l~ 93 (94)
T cd05711 88 DPLKIV 93 (94)
T ss_pred CCeEEe
Confidence 998864
No 305
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.50 E-value=0.0022 Score=40.29 Aligned_cols=66 Identities=6% Similarity=0.007 Sum_probs=38.7
Q ss_pred EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCc----------cceeEEEe--cCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549 166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASD----------LNLLVNLT--NLDTPAFTLEDLGLDGTVLMRVVISGV 233 (261)
Q Consensus 166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~i~~~~l~~~~~Y~~~~~a~ 233 (261)
....|+.++|.|... +.+..+..|++..+. ....+... ......|.|.++++.|.|.| .|.+.
T Consensus 8 ~v~~G~~v~L~C~~~---~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~ 82 (95)
T cd05717 8 TVVEGGTATLKCRVK---NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRY--TCSLY 82 (95)
T ss_pred EEcCCCCEEEEEEEC---CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEE--EEEEe
Confidence 335699999999972 223333334321110 01122111 12235789999999999999 77777
Q ss_pred cCC
Q psy11549 234 NAK 236 (261)
Q Consensus 234 N~~ 236 (261)
+..
T Consensus 83 ~~~ 85 (95)
T cd05717 83 TMP 85 (95)
T ss_pred cCC
Confidence 654
No 306
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.47 E-value=0.00027 Score=44.32 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.3
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
+.|++.++..+|+|.|+|.|.|..... +.++.|.|.
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~-s~tF~l~v~ 100 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASA-SVTFNVYVN 100 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeE-EEEEEEEEe
Confidence 479999999999999999999998877 667777764
No 307
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.41 E-value=0.0012 Score=41.22 Aligned_cols=73 Identities=11% Similarity=0.182 Sum_probs=42.2
Q ss_pred cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
.+.+.|.+.+..|+.+|.|+++..+.... .......+. .+.|.+.....+|...|+|++.+..-.......+.
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 46789988866655599999863221100 000001111 34577766666777799999999754444433333
No 308
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.40 E-value=0.00038 Score=45.21 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=26.2
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus 80 sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 80 SLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred EEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 69999999999999999998773333234455544
No 309
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.39 E-value=0.084 Score=51.66 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=106.8
Q ss_pred cCCCCCCEeEEE--EEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc
Q psy11549 26 KVSRQSAGTYKC--SAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETL 103 (261)
Q Consensus 26 ~~~~~D~G~Y~C--~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~ 103 (261)
.++..+.|.|.- .|.|..|.. +....+.|.++-.-.........+..|+.+.+.-.....+.. .+.|...+. ...
T Consensus 1663 ~vt~~~pG~Y~VtL~aSN~vG~~-t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~v-ty~W~~gdG-~s~ 1739 (2740)
T TIGR00864 1663 KLNPLEAGPCDIFLQAANLLGQA-TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGL-QYRWFLEEG-DDL 1739 (2740)
T ss_pred EEecCCCceEEEEEEEeecccce-eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCc-EEEEEECCC-CCc
Confidence 345678899966 557888776 555566666543222111111335578889888766666555 899987653 222
Q ss_pred ccCCceEEeCCceeEEEEecCCCCcCeEEE--EEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEe---------ecCCe
Q psy11549 104 DVGSERFSSGSRGSMLRYTPVTELDYGTLS--CAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRN---------ETTSS 172 (261)
Q Consensus 104 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~---------~~~~~ 172 (261)
......+ ... ....|.|. ..|.|..+.... ...|.|..+.... .+.. ..+..
T Consensus 1740 ~~s~p~~----------tHt--f~~~G~y~VtVta~N~vss~~~--s~~V~VqepV~GL---~i~~~~~~~~~~~~ag~~ 1802 (2740)
T TIGR00864 1740 ETSEPFM----------SHS--FPSAGLHLVTMKAFNELGSANA--SEEVDVQEPISGL---KIRAADAGEQNFFAADSS 1802 (2740)
T ss_pred ccCCCce----------EEE--ccCCceEEEEEEEEccccccce--eEEEEEEeccccc---eEecCCCCcccceecCcE
Confidence 1111110 011 22345554 456787776665 3445554544322 2211 12333
Q ss_pred EEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549 173 VHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS 250 (261)
Q Consensus 173 ~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~ 250 (261)
+.+.=++ ..|.+..|.|.+...... .. .... ....+.|.|.+++.|.|.+|....+..+.+..+
T Consensus 1803 v~F~a~v--stGsnVsw~W~f~~g~s~-------~g--k~v~---~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~ 1866 (2740)
T TIGR00864 1803 VCFQGEL--ATGTNVSWCWAIDGGSSK-------MG--KHAC---MTFPDAGTFAIRLNASNAVSGKSASREFFAEEP 1866 (2740)
T ss_pred EEEEEEc--cCCCeeEEEEEeCCCCcc-------cc--ceeE---EecCCCeEEEEEEEEEcccCcceeeeeEEEEEe
Confidence 3333333 567778888876432211 11 1111 226788999999999999998888877766533
No 310
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.38 E-value=0.0022 Score=40.13 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=44.0
Q ss_pred EEeeCCCcEEE-EEEEeeCCCCceeEEEEcCCcccc----ccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 69 VGASRSESVDI-HCAVEADPPARSFKWKFNNSGETL----DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 69 ~~~~~g~~~~l-~C~~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
..+..|+.+.+ .|.+.+..|+.+|.|+.+..+..- ...+..+. -.+.+.+.....+|...++|.+....-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~T---V~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTT---VTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEE---EEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 55668888888 898876666559999976433210 00111111 133566666667777799999988643
No 311
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.35 E-value=0.00018 Score=42.80 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=23.1
Q ss_pred EEEECCeEEEccCCCCCCEeEEEEEEe
Q psy11549 15 IILSNQSLVLQKVSRQSAGTYKCSAIN 41 (261)
Q Consensus 15 ~~~~~~~L~i~~~~~~D~G~Y~C~~~~ 41 (261)
....+++|.|.++..+|.|.|+|.|.|
T Consensus 49 ~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 49 SSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 334456899999999999999999986
No 312
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.33 E-value=0.0011 Score=41.35 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=41.4
Q ss_pred EeecCCeEEEEeecCCCCCCCeEEEEEEEeC-----Cccce-----------eE--EE--ecCCCCcEEEcCCCCCCccE
Q psy11549 166 RNETTSSVHISCTPGYDGGLPQTFTLELYSA-----SDLNL-----------LV--NL--TNLDTPAFTLEDLGLDGTVL 225 (261)
Q Consensus 166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-----~~~~~-----------~~--~~--~~~~~~~~~i~~~~l~~~~~ 225 (261)
....|+.++|.|.. .+.+..+..|++.. +..+. .+ .. .......|+|.+++.+|.|.
T Consensus 3 ~~~~G~~VtL~C~~---s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 3 LGKKGDTAELPCTA---SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred EeeCCCCEEEEEEe---CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 34569999999996 23344444454211 00000 01 00 01223469999999999999
Q ss_pred EEEEEEEEcCCCc
Q psy11549 226 MRVVISGVNAKGR 238 (261)
Q Consensus 226 Y~~~~~a~N~~G~ 238 (261)
| .|.+.|..+.
T Consensus 80 Y--~C~v~~~~~~ 90 (94)
T cd07690 80 Y--ICEVEDKKEE 90 (94)
T ss_pred E--EEEECCccce
Confidence 9 8889888763
No 313
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.31 E-value=0.00057 Score=43.38 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=38.6
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCce-EEe-CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSER-FSS-GSR---GSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~-~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
.++.++|.|.+.+..+ ...+.|++++........... ... ++. .+.|.+..-..++...|+|.+....
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 5677999999998755 668999998753211100000 111 111 2234343333334679999998753
No 314
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.28 E-value=0.0036 Score=39.18 Aligned_cols=68 Identities=22% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCC--ceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGS--RGSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
.|+.++|.|.+.+..+ ..++.|++++..............++ ..+....-.+...+...|+|.+....
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 5788999999999755 55899999875322111111111111 11111112333445668999998754
No 315
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.26 E-value=0.00091 Score=37.97 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=35.3
Q ss_pred eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
...|.+++|.|..... .+.|.+++.. . .. ....+.+.+.. +++|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~~----~i~W~~n~~~--~--~g-------~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSGD----DIKWKKNDQV--S--QG-------SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCCC----CceEEeCCcc--C--CC-------CCceEEeeccC-CCCceEEEEeCCC
Confidence 3579999999986533 4999998731 1 11 11134555555 8899999998643
No 316
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.23 E-value=0.0013 Score=39.79 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=38.8
Q ss_pred CCCCeeccCCCCce-----EEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549 1 MAGGIPLAHNTSAR-----IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57 (261)
Q Consensus 1 ~~ng~~l~~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~ 57 (261)
||||++|.+..... ....-++|.|..-..+|...|+|+|.|..-........|.|.+
T Consensus 20 ~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 20 FKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 68999997542211 1112247999988999999999999887644445567777764
No 317
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.22 E-value=0.0026 Score=39.82 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=42.2
Q ss_pred CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe-CC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS-GS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149 (261)
Q Consensus 74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 149 (261)
.....+.|.+.+..|+.+|.|+++..+.. ....... .+ ..+.|.+.....++...|+|.+.+..-.......+
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~ 91 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSV 91 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 34567899996555544999998622111 0001011 11 13466676666667779999999875443333333
Q ss_pred EE
Q psy11549 150 QV 151 (261)
Q Consensus 150 ~v 151 (261)
.+
T Consensus 92 ~L 93 (95)
T cd05719 92 TL 93 (95)
T ss_pred Ee
Confidence 33
No 318
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.11 E-value=0.0044 Score=38.92 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.8
Q ss_pred eeCCCcEEEEEEEeeC--CCCceeEEEEcCC
Q psy11549 71 ASRSESVDIHCAVEAD--PPARSFKWKFNNS 99 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~ 99 (261)
+..|+.++|.|.+.+. |+...+.|.+++.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 3458899999999999 6666899999863
No 319
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.07 E-value=0.0058 Score=38.22 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCc-eEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSE-RFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
....++|.|.+.+..| ..++.|.+++.......... .....++ .+.|.+..-...+...|+|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4566899999999655 56899999875321111010 1111111 223334432223556999999876433
No 320
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.06 E-value=0.008 Score=37.45 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=38.1
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-Ccee-EEEEecCCCCcCeEEEEEEEcC
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-SRGS-MLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~-~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
.|...+|.|.+.+..+ ...+.|.+++.... .........+ +.+. ......+...+...|+|.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 4667799999999654 66899999885322 1111111111 1111 1122233456677899999874
No 321
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.03 E-value=0.11 Score=41.01 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=83.7
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEe-eceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKY-APICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF 96 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~ 96 (261)
+|.|.++...|.|.|.-...+..... ....+.+.+.. +|.+.... -.+..|++-...|.+...-+ ...+.|+.
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a---~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA---PPVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 79999999999997755444444433 12333444443 33333222 23569999999999987655 33699999
Q ss_pred cCCcccccc-CCceE--EeC----CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC--CCCcceEEe
Q psy11549 97 NNSGETLDV-GSERF--SSG----SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRN 167 (261)
Q Consensus 97 ~~~~~~~~~-~~~~~--~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~--~p~~~~v~~ 167 (261)
++....... .+... ... ...+.+.+.+...+.--..+|.+.-..+..... + .....|. ++..+.+.-
T Consensus 285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~--r--nAaatP~VY~~P~ISv~F 360 (490)
T PHA03271 285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMIST--T--NATAIPTVYHHPRISLAF 360 (490)
T ss_pred CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceee--e--ecccCCccccCCeEEEEE
Confidence 875322111 11111 001 112234444433233348899987654433332 1 3333332 333445543
Q ss_pred ecCCeE-EEEeecCCCCCCCeEEEEEEEe
Q psy11549 168 ETTSSV-HISCTPGYDGGLPQTFTLELYS 195 (261)
Q Consensus 168 ~~~~~~-~l~c~~~~~~~~p~~~~~~~~~ 195 (261)
..|..+ +..|-+ + ...+.|+.++
T Consensus 361 edG~AVCtA~CVP--~---gV~lrWlVgD 384 (490)
T PHA03271 361 KDGYAICTIECVP--S---GITVRWLVHD 384 (490)
T ss_pred eCCEEEEeccccC--C---CcEEEEEecC
Confidence 334333 333544 1 2355565554
No 322
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.97 E-value=0.13 Score=40.87 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=55.4
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF 96 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~ 96 (261)
..|.|..++...+|.|+=...+..+.. ....++|....+|.+.... -.+..|++-.-.|.+....+ ...+.|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 359999999999999998876665543 2334455554566544332 23569999999999987655 33699999
Q ss_pred cCCc
Q psy11549 97 NNSG 100 (261)
Q Consensus 97 ~~~~ 100 (261)
++..
T Consensus 259 ng~~ 262 (466)
T PHA03270 259 GGDE 262 (466)
T ss_pred CCcc
Confidence 8853
No 323
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.96 E-value=0.0086 Score=38.73 Aligned_cols=69 Identities=9% Similarity=0.073 Sum_probs=41.2
Q ss_pred CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCC-ccc-------------------eeEEEe--cCCCCcEEEcC
Q psy11549 160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSAS-DLN-------------------LLVNLT--NLDTPAFTLED 217 (261)
Q Consensus 160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~-~~~-------------------~~~~~~--~~~~~~~~i~~ 217 (261)
|..+.+ ..|+.++|.|.. .. +..+..||+... ..+ ..+... ......|+|.+
T Consensus 5 p~~~~v--~~G~~v~l~C~~--~~--~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 78 (110)
T cd05899 5 PRYLIK--GRGQSVTLRCSQ--TS--GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKS 78 (110)
T ss_pred CCceEE--cCCCcEEEEEEE--CC--CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECC
Confidence 443444 459999999997 22 334455555432 111 111111 12346789999
Q ss_pred CCCCCccEEEEEEEEEcCC
Q psy11549 218 LGLDGTVLMRVVISGVNAK 236 (261)
Q Consensus 218 ~~l~~~~~Y~~~~~a~N~~ 236 (261)
++.+|.|.| .|.+.+..
T Consensus 79 ~~~~Dsg~Y--~Ca~~~~~ 95 (110)
T cd05899 79 AEPEDSAVY--LCASSLGG 95 (110)
T ss_pred CChhhCEEE--EEEeeCCC
Confidence 999999999 77766543
No 324
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.96 E-value=0.00074 Score=43.25 Aligned_cols=24 Identities=17% Similarity=0.475 Sum_probs=22.0
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKG 44 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~ 44 (261)
+|.|.+++.+|+|.|.|.+.+..+
T Consensus 68 sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 68 TLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEECCCCHHHCEEEEEEEecCCC
Confidence 899999999999999999987664
No 325
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.96 E-value=0.0028 Score=38.64 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEE-eCCc----eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFS-SGSR----GSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
.+..++|.|.+.+..+ ...+.|++++............. ..++ .+.|.+. ..+...|+|.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 4889999999998755 66899998875311110000111 1111 2244444 455568999998754
No 326
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.95 E-value=0.012 Score=37.88 Aligned_cols=64 Identities=6% Similarity=0.049 Sum_probs=39.0
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCCc-cc---------------eeEEEe---cCCCCcEEEcCCCCCCccEEEE
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSASD-LN---------------LLVNLT---NLDTPAFTLEDLGLDGTVLMRV 228 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~-~~---------------~~~~~~---~~~~~~~~i~~~~l~~~~~Y~~ 228 (261)
..|+.++|.|... .. +.....||+.... .+ ..+... ......+.|.+++.+|+|.|
T Consensus 11 ~~G~~v~L~C~~~--~~-~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y-- 85 (109)
T cd04983 11 QEGENVTLNCNYS--TS-TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY-- 85 (109)
T ss_pred cCCCCEEEEEEEC--CC-CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE--
Confidence 5699999999973 22 3334445554221 11 111111 12346789999999999999
Q ss_pred EEEEEcCC
Q psy11549 229 VISGVNAK 236 (261)
Q Consensus 229 ~~~a~N~~ 236 (261)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 77777654
No 327
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.88 E-value=0.0098 Score=37.30 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=21.6
Q ss_pred CCCcEEEEEEEeeCC-CCceeEEEEcCC
Q psy11549 73 RSESVDIHCAVEADP-PARSFKWKFNNS 99 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~-~~~~~~W~~~~~ 99 (261)
.+..++|.|.+.+.. ....+.|.+++.
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~ 42 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNS 42 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCE
Confidence 456789999999964 466899999875
No 328
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.85 E-value=0.013 Score=37.73 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=44.8
Q ss_pred EEeeCCCcEEEEEEEeeCCCC--ceeEEEEcCCccccc-------------cCCceE----EeCCceeEEEEecCCCCcC
Q psy11549 69 VGASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLD-------------VGSERF----SSGSRGSMLRYTPVTELDY 129 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~-------------~~~~~~----~~~~~~~~l~i~~~~~~d~ 129 (261)
..+..|..++|.|.+.+.... ..+.|++...+ .++ ....++ ..+.+...|.+.++..+|.
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 446678889999999765543 26889875433 211 011111 2244456899999999999
Q ss_pred eEEEEEE
Q psy11549 130 GTLSCAA 136 (261)
Q Consensus 130 g~y~C~~ 136 (261)
+.|.|..
T Consensus 87 a~Y~Ca~ 93 (115)
T cd05721 87 DIYFCKI 93 (115)
T ss_pred eEEEEEe
Confidence 9999975
No 329
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.85 E-value=0.0018 Score=40.94 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.8
Q ss_pred eEEEccCCCCCCEeEEEEEEeC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINT 42 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~ 42 (261)
+|.|.+++.+|+|.|.|.+.+.
T Consensus 64 ~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 64 SLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEECCCChhhCEEEEEEEccC
Confidence 7999999999999999988643
No 330
>KOG0196|consensus
Probab=96.82 E-value=0.015 Score=49.69 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=58.0
Q ss_pred CCCCCCCCcceEEeecCCeEEEEeecCCCCC-CC-eEEEEEEEeCCccc---------eeE--EEecCCCCcEEEcCCCC
Q psy11549 154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGG-LP-QTFTLELYSASDLN---------LLV--NLTNLDTPAFTLEDLGL 220 (261)
Q Consensus 154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~-~p-~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~i~~~~l 220 (261)
..||+.|+++... ..+.++.|.|+++.+.| -+ +.|.+..+.-.... ..+ ....-.++.++|.+ |
T Consensus 329 T~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~--L 405 (996)
T KOG0196|consen 329 TRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSD--L 405 (996)
T ss_pred CCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEec--c
Confidence 4688888887665 78999999999876544 33 66887765522111 111 12233567899999 9
Q ss_pred CCccEEEEEEEEEcCCC
Q psy11549 221 DGTVLMRVVISGVNAKG 237 (261)
Q Consensus 221 ~~~~~Y~~~~~a~N~~G 237 (261)
.+-.+|.|.+.|.|.+.
T Consensus 406 ~ah~~YTFeV~AvNgVS 422 (996)
T KOG0196|consen 406 LAHTNYTFEVEAVNGVS 422 (996)
T ss_pred ccccccEEEEEEeeccc
Confidence 99999999999999886
No 331
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.81 E-value=0.0083 Score=37.50 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=36.4
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-Cc----eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-SR----GSMLRYTPVTELDYGTLSCAAQNA 139 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~~~ 139 (261)
.++.++|.|.+.+..+ ...+.|.+++..............+ +. .+.|.+. +.+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 4566799999999654 6689999987531110000011111 11 2234443 34556899999875
No 332
>PHA02633 hypothetical protein; Provisional
Probab=96.76 E-value=0.0066 Score=33.90 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.2
Q ss_pred eEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146 (261)
Q Consensus 117 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 146 (261)
..|.|-++..+|+|.|.|...|..--...+
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~s 47 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMK 47 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEE
Confidence 369999999999999999999865444443
No 333
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.71 E-value=0.0042 Score=43.40 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=32.2
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEEEee
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRVKYA 58 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V~~~ 58 (261)
.+.+|+|.+++.+|+|.|+|....- .|...+.++-|.|...
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 4579999999999999999987544 4424477888888743
No 334
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.65 E-value=0.0068 Score=39.42 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=39.7
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe-CC-c----eeEEEEecCCCCc-CeEEEEEEEcCCceEE
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS-GS-R----GSMLRYTPVTELD-YGTLSCAAQNAIGTQV 144 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~-~~-~----~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~ 144 (261)
.++.++|.|.+.+..+ ...+.|.+++.............. .+ . .+.|.+......+ ...|+|.+........
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 4667899999999765 458999998743111100000111 11 1 2234444332223 4589999987644433
No 335
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.60 E-value=0.28 Score=39.47 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=69.7
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE--EeeceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV--KYAPICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF 96 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~ 96 (261)
.|.|..++..++|.|+=...+..+.. ....++.| ..+|.+.... ..+..|++-.-.|.+...-+ ...+.|+.
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~-~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTL-VNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCce-eeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 49999999999999985544554433 33345555 4566544322 23569999999999987655 34699999
Q ss_pred cCCccccccC-CceEE--eCCc---eeEEEEecCCC-CcCeEEEEEEEcCCceE
Q psy11549 97 NNSGETLDVG-SERFS--SGSR---GSMLRYTPVTE-LDYGTLSCAAQNAIGTQ 143 (261)
Q Consensus 97 ~~~~~~~~~~-~~~~~--~~~~---~~~l~i~~~~~-~d~g~y~C~~~~~~~~~ 143 (261)
++........ ..... ..+. .+.|.+..... +.--..+|.+.-..+..
T Consensus 275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~v 328 (486)
T PHA03273 275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEV 328 (486)
T ss_pred CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCc
Confidence 8853221000 00111 1111 23444444322 23347899987554443
No 336
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=96.59 E-value=0.034 Score=35.37 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=57.3
Q ss_pred CCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCc-----EEEcCCCCCCccEEEEE
Q psy11549 156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPA-----FTLEDLGLDGTVLMRVV 229 (261)
Q Consensus 156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~i~~~~l~~~~~Y~~~ 229 (261)
+|..|.++.-....-..++..|+++..++.+..|.+.|.......... ......... +.+..-...-...|.++
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~i~ 86 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNLPTNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYCIQ 86 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTSTCEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEEEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCCCCcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEEEE
Confidence 566777766666678899999999888888877999988876332222 223223334 56663336677899999
Q ss_pred EEEEcCCCcC
Q psy11549 230 ISGVNAKGRS 239 (261)
Q Consensus 230 ~~a~N~~G~~ 239 (261)
|.|.|..|..
T Consensus 87 V~a~~~~~~~ 96 (104)
T PF09067_consen 87 VEATNALGSI 96 (104)
T ss_dssp EEEEETTEEE
T ss_pred EEeccCCCcE
Confidence 9999999854
No 337
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.56 E-value=0.0056 Score=38.98 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCC
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNS 99 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~ 99 (261)
.+..++|.|.+.+..+ ...+.|.+++.
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~ 42 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQ 42 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCE
Confidence 4678999999999765 55789999875
No 338
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.56 E-value=0.018 Score=36.88 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=35.8
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCC-ccce---------------eEEEe-cCCCCcEEEcCCCCCCccEEEEEE
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSAS-DLNL---------------LVNLT-NLDTPAFTLEDLGLDGTVLMRVVI 230 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~-~~~~---------------~~~~~-~~~~~~~~i~~~~l~~~~~Y~~~~ 230 (261)
..|+.++|.|... +.....+..||+... ..+. .+... ......|.|.+++++|.|.| .|
T Consensus 13 ~~G~~v~L~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y--~C 88 (106)
T cd04980 13 SPGESATISCKAS--QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY--YC 88 (106)
T ss_pred CCCCCEEEEEEEC--CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE--EE
Confidence 5699999999972 221123444554422 1110 11111 11223588999999999999 66
Q ss_pred EEEc
Q psy11549 231 SGVN 234 (261)
Q Consensus 231 ~a~N 234 (261)
.+.+
T Consensus 89 a~~~ 92 (106)
T cd04980 89 QQYG 92 (106)
T ss_pred EEeC
Confidence 6644
No 339
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.54 E-value=0.006 Score=40.16 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=38.9
Q ss_pred eCCCcEEEEEEEeeCCC----CceeEEEEcCCccccccCCc--eE-----------EeCCceeEEEEecCCCCcCeEEEE
Q psy11549 72 SRSESVDIHCAVEADPP----ARSFKWKFNNSGETLDVGSE--RF-----------SSGSRGSMLRYTPVTELDYGTLSC 134 (261)
Q Consensus 72 ~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~~~~~--~~-----------~~~~~~~~l~i~~~~~~d~g~y~C 134 (261)
.=.++|.|+|.+..... ...+.|.++++. ....... .. ....+.++|.+.....- .|+|+|
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~-If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKD-IFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEE-EEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeE-EEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 35778999999875222 235999887642 1111111 00 01223445777653333 799999
Q ss_pred EEEcCCceEEeeEEEE
Q psy11549 135 AAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (261)
.+............+.
T Consensus 103 eVt~~~~ege~~i~Lk 118 (130)
T PF08204_consen 103 EVTELSREGETTIELK 118 (130)
T ss_dssp EEEETTEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEE
Confidence 9998776666543333
No 340
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.52 E-value=0.0028 Score=40.77 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.1
Q ss_pred eEEEccCCCCCCEeEEEEEEe
Q psy11549 21 SLVLQKVSRQSAGTYKCSAIN 41 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~ 41 (261)
.|+|.+++.+|+|.|.|...+
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcC
Confidence 599999999999999998753
No 341
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.46 E-value=0.004 Score=39.32 Aligned_cols=23 Identities=22% Similarity=0.500 Sum_probs=20.8
Q ss_pred eEEEccCCCCCCEeEEEEEEeCC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTK 43 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~ 43 (261)
+|.|.+++.+|+|.|.|.+....
T Consensus 65 ~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 65 TVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEcCCCHHHCEEEEEEcccCC
Confidence 79999999999999999886654
No 342
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.39 E-value=0.032 Score=34.82 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=39.5
Q ss_pred eeCCCcEEEEEEEeeCCCC--ceeEEEEcCCccccccCCceEE-------eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 71 ASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLDVGSERFS-------SGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
+..|..+++.|.+.+..+. ..+.|++... .+. ...+. .......+++.....++..+|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~--~l~--~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGET--LLP--SKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcc--eec--ccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 4689999999999866553 4789986442 111 11111 111223556655444444499999986443
No 343
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.38 E-value=0.02 Score=36.02 Aligned_cols=27 Identities=19% Similarity=0.485 Sum_probs=22.1
Q ss_pred CCCcEEEEEEEeeCC-C-CceeEEEEcCC
Q psy11549 73 RSESVDIHCAVEADP-P-ARSFKWKFNNS 99 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~-~-~~~~~W~~~~~ 99 (261)
.+..++|.|.+.+.. + ...+.|.+++.
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~ 46 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGG 46 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCc
Confidence 577899999999865 3 56899998875
No 344
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.36 E-value=0.0048 Score=45.34 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=30.4
Q ss_pred CCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEe
Q psy11549 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAIN 41 (261)
Q Consensus 3 ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~ 41 (261)
||+.|.++ +...+.+.|.|.+.+...+|+|.|+|+..-
T Consensus 21 ~g~~l~gn-~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 21 NGKPLSGN-SYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCcccCCC-CeEEEccCceEEeeccccccCCceEEEEEE
Confidence 67777643 346667788999999999999999998743
No 345
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.35 E-value=0.016 Score=36.44 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
+-+|.|..++++|+|.|.-.+.+..|......+.|.|
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 5599999999999999999999999998677676666
No 346
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.27 E-value=0.0022 Score=38.72 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=17.7
Q ss_pred CeEEEccCCCCCCEeEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCS 38 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~ 38 (261)
.+|.|.+++.+|+|.|.|.
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEcCCCHHHCEEEEEc
Confidence 3799999999999999996
No 347
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.24 E-value=0.026 Score=35.39 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=21.7
Q ss_pred CCCcEEEEEEEeeCCC-CceeEEEEcCC
Q psy11549 73 RSESVDIHCAVEADPP-ARSFKWKFNNS 99 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~ 99 (261)
.++.++|.|.+.+..+ ...+.|.+++.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~ 42 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSN 42 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCE
Confidence 4567899999999654 66899999875
No 348
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.23 E-value=0.094 Score=33.69 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EE---ecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549 155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NL---TNLDTPAFTLEDLGLDGTVLMRVVI 230 (261)
Q Consensus 155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~~~~l~~~~~Y~~~~ 230 (261)
....+|.++++.. ..-..+|.|+++........|.++|+..... .| .. .......+-+++........|.++|
T Consensus 20 ~~lp~P~nv~~~s-~nf~~iL~W~~~~~~~~~~~ytVq~~~~~~~--~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 20 ASLPAPQNVTVDS-VNFKHILRWDPGPGSPPNVTYTVQYKKYGSS--SWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SSGSSCEEEEEEE-ETTEEEEEEEESTTSSSTEEEEEEEEESSTS--CEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred ccCCCCCeeEEEE-ECCceEEEeCCCCCCCCCeEEEEEEEecCCc--ceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 4455777888774 3666899999844444557799999943333 33 11 2234578888886666788999999
Q ss_pred EEEcCCC
Q psy11549 231 SGVNAKG 237 (261)
Q Consensus 231 ~a~N~~G 237 (261)
+|.-.-.
T Consensus 97 ~A~~~~~ 103 (107)
T PF01108_consen 97 RAEVGNQ 103 (107)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 9965443
No 349
>KOG1480|consensus
Probab=96.21 E-value=0.0055 Score=51.77 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=42.4
Q ss_pred CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
|||+..+.+ +.......+..|++..+.+.|.|+|+|+|.|..+...+-++.+.|.
T Consensus 165 ~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 165 LKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred cccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 577777776 4446667788999999999999999999999887764444444443
No 350
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.10 E-value=0.0059 Score=40.16 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=20.5
Q ss_pred CeEEEccCCCCCCEeEEEEEEeC
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINT 42 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~ 42 (261)
.+|.|.+++.+|+|.|.|.+...
T Consensus 80 ~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 80 CSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEEEccCChhhCeEEEEEEEcC
Confidence 37999999999999999988664
No 351
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.92 E-value=0.039 Score=31.74 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
..+.+.|.|... .+|.|++ +.. ..... ...|.+-....+-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~~-----tsi~W~k-G~~-~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA-----TNITWKK-GKE-ILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC-----CcEEEec-Ccc-ccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 355789999662 2799998 432 11111 22678888888899999999876
No 352
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.78 E-value=0.079 Score=34.56 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=37.3
Q ss_pred EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc----------------eeEEEe---cCCCCcEEEcCCCCCCccEE
Q psy11549 166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN----------------LLVNLT---NLDTPAFTLEDLGLDGTVLM 226 (261)
Q Consensus 166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~----------------~~~~~~---~~~~~~~~i~~~~l~~~~~Y 226 (261)
....|+.++|.|... ......+..||+...... ..+... ......|.|.+++++|.|.|
T Consensus 10 ~~~~G~~v~L~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 10 SVQVGEEVTLNCRYE--TSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred EEcCCCCEEEEEEEe--CCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 335699999999862 222334555555432211 112111 12235688999999999999
Q ss_pred EEEEEEE
Q psy11549 227 RVVISGV 233 (261)
Q Consensus 227 ~~~~~a~ 233 (261)
.|.+.
T Consensus 88 --~C~~~ 92 (116)
T cd07706 88 --FCALS 92 (116)
T ss_pred --EEEEE
Confidence 55554
No 353
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=95.66 E-value=0.0079 Score=38.47 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.8
Q ss_pred eEEEccCCCCCCEeEEEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAI 40 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~ 40 (261)
+|.|.+++.+|+|.|.|.+.
T Consensus 70 ~L~I~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 70 VLTLKNFQKENEGYYFCSVA 89 (104)
T ss_pred EEEECCCCHHHCEEEEEEEc
Confidence 79999999999999999875
No 354
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=95.60 E-value=0.053 Score=34.70 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=48.2
Q ss_pred ceEEeecCCeEEEEeecCC----CCC--------CC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549 163 CSVRNETTSSVHISCTPGY----DGG--------LP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVV 229 (261)
Q Consensus 163 ~~v~~~~~~~~~l~c~~~~----~~~--------~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~ 229 (261)
+.+. ..+..+.+.+..+. .++ .+ ..|.+.+...+....... .......++|.+ |.+++.|.++
T Consensus 8 v~v~-~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~-~~~~~~~~~l~~--L~p~t~YCv~ 83 (106)
T PF09294_consen 8 VNVS-SCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKE-IETKNSSVTLSD--LKPGTNYCVS 83 (106)
T ss_dssp EEEE-EETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEE-EESSSEEEEEES----TTSEEEEE
T ss_pred EEEE-ECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEE-EeecCCEEEEeC--CCCCCCEEEE
Confidence 4553 45888888887643 011 22 457787777666522222 334456779999 9999999999
Q ss_pred EEEEcCC--CcCCceeeeeee
Q psy11549 230 ISGVNAK--GRSLPVIWDDFS 248 (261)
Q Consensus 230 ~~a~N~~--G~~~~s~~~~~~ 248 (261)
+.|.... ..|.+|.+..+.
T Consensus 84 V~~~~~~~~~~s~~S~~~C~~ 104 (106)
T PF09294_consen 84 VQAFSPSQNKNSQPSEPQCIT 104 (106)
T ss_dssp EEEEECSSTEEEEEBSEEEEE
T ss_pred EEEEeccCCCcCCCCCCEeEe
Confidence 9983222 255566555443
No 355
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=95.58 E-value=0.051 Score=34.32 Aligned_cols=66 Identities=11% Similarity=-0.040 Sum_probs=37.0
Q ss_pred cCCeEEEEeecCCCCCCCeEE--EEEEEeCCccceeEEEe-----cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549 169 TTSSVHISCTPGYDGGLPQTF--TLELYSASDLNLLVNLT-----NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR 238 (261)
Q Consensus 169 ~~~~~~l~c~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~ 238 (261)
.|+.++|.|.+ .++.|... +.||+............ ......+++.--+-+++..| +|.|.+.++.
T Consensus 15 eG~~~tL~C~v--~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~--sC~A~l~l~~ 87 (100)
T cd05755 15 VGKNYTLQCDV--PGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANF--SCETELDLRP 87 (100)
T ss_pred CCCcEEEEEEE--cCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEE--EEEEEeccCc
Confidence 49999999998 77777653 46666543332111110 01112333332223344466 9999998874
No 356
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=95.54 E-value=0.027 Score=34.17 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=27.1
Q ss_pred CCCCeeccCCCCceEEE-ECC------eEEEccCCCCCCEeEEEEEEeCCCc
Q psy11549 1 MAGGIPLAHNTSARIIL-SNQ------SLVLQKVSRQSAGTYKCSAINTKGE 45 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~-~~~------~L~i~~~~~~D~G~Y~C~~~~~~~~ 45 (261)
||||++|.... ..... .++ .|.+.....+|.+.|+|.+.+....
T Consensus 20 ~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 20 FKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 57888886332 11111 122 4555555666778999999888654
No 357
>KOG4367|consensus
Probab=95.51 E-value=0.031 Score=44.07 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=60.8
Q ss_pred ecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549 168 ETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD 245 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~ 245 (261)
...++++|+|..+.-.+.|. .|.++.-.+..+ .+ ++....+++++|.+ |.-...|.-++.|.|..|.++.|..+
T Consensus 450 t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g--~frevy~g~etmctvdg--lhfns~y~arvka~n~tg~s~ys~tl 525 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLSTVPADGYILELDDGNGG--QFREVYVGKETMCTVDG--LHFNSTYNARVKAFNKTGVSPYSKTL 525 (699)
T ss_pred ccCCceEEEeecCCCCCCCCcceEEEeecCCCC--ceeEEEecCceeEEecc--eecchhHHHHHHHhhccCCCccccee
Confidence 35789999999544455554 488887766554 34 66667789999999 98899999999999999999998877
Q ss_pred eee
Q psy11549 246 DFS 248 (261)
Q Consensus 246 ~~~ 248 (261)
...
T Consensus 526 ~lq 528 (699)
T KOG4367|consen 526 VLQ 528 (699)
T ss_pred Eee
Confidence 654
No 358
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.49 E-value=0.047 Score=33.21 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=27.5
Q ss_pred CCCCeeccCCCCceEEEEC-------CeEEEccCCCCCCEeEEEEEEeCCCc
Q psy11549 1 MAGGIPLAHNTSARIILSN-------QSLVLQKVSRQSAGTYKCSAINTKGE 45 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~-------~~L~i~~~~~~D~G~Y~C~~~~~~~~ 45 (261)
+|||++|...........+ .+|.|.....+|...|+|.+.+....
T Consensus 20 ~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 20 RKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 5789888643211111112 24555556677889999999887644
No 359
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.46 E-value=0.079 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.4
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeC
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINT 42 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~ 42 (261)
.+.+|.+.+++..|+|.++|.+.-.
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEEC
Confidence 3458999999999999999998543
No 360
>PHA03042 CD47-like protein; Provisional
Probab=95.41 E-value=0.18 Score=37.57 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=39.3
Q ss_pred CCCcEEEEEEEeeCC----CCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 73 RSESVDIHCAVEADP----PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 73 ~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
=.+++.++|.+.... ....+.|.++++. ....++. ..++|.+ +-...-.|+|+|+|.+.......
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~-If~~n~t------n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKV-IFKKNNT------NTSSLKF-NFSKNLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCee-EEEecCC------cceEEEE-eccccCCCceeEEEeecccCccE
Confidence 467889999987531 2336999987742 2211111 1234544 34455589999999986554444
No 361
>KOG1480|consensus
Probab=95.17 E-value=0.0032 Score=53.11 Aligned_cols=119 Identities=17% Similarity=0.282 Sum_probs=68.3
Q ss_pred eEEEccCCCCCCE---eEE--EEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEE
Q psy11549 21 SLVLQKVSRQSAG---TYK--CSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWK 95 (261)
Q Consensus 21 ~L~i~~~~~~D~G---~Y~--C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~ 95 (261)
...|+...-++.| .|. |.|....|...+..+.+.+.+.-...........+..+..+.+.|...-.-+...+.|+
T Consensus 86 si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~ 165 (909)
T KOG1480|consen 86 SIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWL 165 (909)
T ss_pred eeeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhcc
Confidence 4555555444443 354 45666666433332333322222222223333557788889999976544443379999
Q ss_pred EcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549 96 FNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ 143 (261)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 143 (261)
+++..... ...... .....+.+..+...|.|+|+|++.|..+..
T Consensus 166 k~e~~~~p---d~n~~~-~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 166 KNEVVIDP---DANVIR-ASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred ccCCCCCc---cccchh-hhcCCccccchhhhhcccceeeeehhhccc
Confidence 98753222 111111 112358899999999999999999976543
No 362
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.13 E-value=0.27 Score=32.00 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=37.5
Q ss_pred EEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-Cccc--------------------eeEEEe-cC--CCCcEEEcCCCC
Q psy11549 165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLN--------------------LLVNLT-NL--DTPAFTLEDLGL 220 (261)
Q Consensus 165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~--------------------~~~~~~-~~--~~~~~~i~~~~l 220 (261)
+....|+.++|.|..... ..+..+..||+.. +..+ ..+... .. ....|+|.+++.
T Consensus 8 ~~~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 8 ITREESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred EEeCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 344569999999996221 1233345555542 2111 111111 11 235788999999
Q ss_pred CCccEEEEEEEEE
Q psy11549 221 DGTVLMRVVISGV 233 (261)
Q Consensus 221 ~~~~~Y~~~~~a~ 233 (261)
+|+|.| .|.+.
T Consensus 87 ~Dsg~Y--~C~~~ 97 (116)
T cd04982 87 EDSATY--YCAYW 97 (116)
T ss_pred HHCEEE--EEEEe
Confidence 999999 55553
No 363
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.83 E-value=0.075 Score=33.51 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=31.9
Q ss_pred eEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549 109 RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL 153 (261)
Q Consensus 109 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~ 153 (261)
++........|.|..+.+.|+|.|..++++..|.... ..|.|.|
T Consensus 63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~-~~FqVsV 106 (108)
T PF11465_consen 63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCT-KNFQVSV 106 (108)
T ss_dssp HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEE-EEEEEEE
T ss_pred eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEE-EEEEEEe
Confidence 4445555558999999999999999999998887643 3666654
No 364
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.80 E-value=0.038 Score=36.17 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.2
Q ss_pred eEEEccCCCCCCEeEEEEEEe
Q psy11549 21 SLVLQKVSRQSAGTYKCSAIN 41 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~ 41 (261)
.|.|.+++.+|+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 699999999999999998754
No 365
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.61 E-value=0.045 Score=31.21 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=23.1
Q ss_pred EECCeEEEccCCCCCCEeEEEEEEeCC
Q psy11549 17 LSNQSLVLQKVSRQSAGTYKCSAINTK 43 (261)
Q Consensus 17 ~~~~~L~i~~~~~~D~G~Y~C~~~~~~ 43 (261)
.....|.|.+++.+|.|.|.|.+.+..
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCc
Confidence 344589999999999999999997765
No 366
>PHA02982 hypothetical protein; Provisional
Probab=94.55 E-value=0.11 Score=36.98 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=50.1
Q ss_pred EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--------c-----------CCceEEeCCceeEEEEecCCCCcC
Q psy11549 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--------V-----------GSERFSSGSRGSMLRYTPVTELDY 129 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~-----------~~~~~~~~~~~~~l~i~~~~~~d~ 129 (261)
+....++.+.|.|.......-....|.... +.-+. + ...+.+.++..++|+|.++..+..
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~-~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDA-GFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCC-CeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 445678999999986544433357786532 21111 0 112235677788999999999999
Q ss_pred eEEEEEEEcCCceEE
Q psy11549 130 GTLSCAAQNAIGTQV 144 (261)
Q Consensus 130 g~y~C~~~~~~~~~~ 144 (261)
|=|+|.+....+..+
T Consensus 113 GCYtc~~ks~~~k~E 127 (251)
T PHA02982 113 GCFTCEAKDAEGKEE 127 (251)
T ss_pred CceEEEEecCCCchh
Confidence 999999998654433
No 367
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=94.40 E-value=0.031 Score=34.91 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=27.7
Q ss_pred CCCCeeccCCCC--ceEEEECC------eEEEccCCCCCCEeEEEEEEeCCC
Q psy11549 1 MAGGIPLAHNTS--ARIILSNQ------SLVLQKVSRQSAGTYKCSAINTKG 44 (261)
Q Consensus 1 ~~ng~~l~~~~~--~~~~~~~~------~L~i~~~~~~D~G~Y~C~~~~~~~ 44 (261)
+|||+++..... ......++ .|.|.....+|.|.|+|.+.+...
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 35 LKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 478888853321 12222333 455666666799999999988754
No 368
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=94.29 E-value=0.16 Score=41.50 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~ 57 (261)
.++.|.|.+++.+|+|.|+-...+..+......+.|.|..
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ----------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 4467999999999999999988877766545556777764
No 369
>PHA03283 envelope glycoprotein E; Provisional
Probab=94.19 E-value=2.7 Score=34.72 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=48.7
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecC--------------------ceeEEEeeCCCcEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD--------------------RIVIVGASRSESVDI 79 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~--------------------~~~~~~~~~g~~~~l 79 (261)
+.|.|.+++.+++|.|+--.++..+ .....+.|+|+.++..... .........|++..+
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 5799999999999999988887666 3344566777752211100 011133567898888
Q ss_pred EEEEeeCC----CCceeEEEE
Q psy11549 80 HCAVEADP----PARSFKWKF 96 (261)
Q Consensus 80 ~C~~~~~~----~~~~~~W~~ 96 (261)
+-...... -...+.|++
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEEEeeccCCCCceEEEEEEE
Confidence 76655333 133788985
No 370
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.96 E-value=0.12 Score=29.78 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~ 57 (261)
+.+|-+-+...+-.|.|.|.+.+. +....|+|.+
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~~-----~~~~~LQVyY 65 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESEP-----NKEKTLQVYY 65 (69)
T ss_pred ccEEeccCcccCCCcceEecCccC-----CCcEEEEEEE
Confidence 568889999999999999988761 2334566653
No 371
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.90 E-value=0.14 Score=37.96 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=32.4
Q ss_pred eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549 91 SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI 140 (261)
Q Consensus 91 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 140 (261)
.+.|..++. ..+ ..+....+... ..|.+.+..++++|.|+|.+....
T Consensus 14 ~y~W~GP~g-~~l-~gn~~~nIT~T-G~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 14 TYLWTGPNG-KPL-SGNSYVNITET-GKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred ceEEECCCC-ccc-CCCCeEEEccC-ceEEeeccccccCCceEEEEEEEe
Confidence 799987653 333 23333333332 259999999999999999987643
No 372
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.45 E-value=1 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.330 Sum_probs=26.9
Q ss_pred eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
........+.....+..|+|.+.|.|....-......+.|.|
T Consensus 37 k~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 37 KSLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred cccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 344445567888889999999999996433333233344433
No 373
>KOG0613|consensus
Probab=92.49 E-value=0.92 Score=41.46 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=115.9
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe-----e-----------ceee--cCceeEEEeeCCCcEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY-----A-----------PICK--SDRIVIVGASRSESVDIH 80 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~-----~-----------p~~~--~~~~~~~~~~~g~~~~l~ 80 (261)
+.+..|.+....+.+.|+|...+..++.... ++..+.. . +... ......+.+..+..+.+.
T Consensus 277 ~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~ 355 (1205)
T KOG0613|consen 277 GNTKTIQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMP 355 (1205)
T ss_pred CccccccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeec
Confidence 3467778888888889999887777665222 2222221 0 1000 011112556778889999
Q ss_pred EEEeeCCCCceeEEEEcCCccccccCC-ceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC-
Q psy11549 81 CAVEADPPARSFKWKFNNSGETLDVGS-ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ- 158 (261)
Q Consensus 81 C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~- 158 (261)
|...+...+..+.|+++.......... ..+.-......+.+..+...+.+.|.|.|.|..|........++.. ..+.
T Consensus 356 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~-~~~gt 434 (1205)
T KOG0613|consen 356 TALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSE-EMPGT 434 (1205)
T ss_pred ccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhccc-ccCCC
Confidence 999988887569999865432221111 1111122334678889999999999999999888655432222322 1111
Q ss_pred CCC----cceEEe--ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549 159 PPQ----NCSVRN--ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVIS 231 (261)
Q Consensus 159 ~p~----~~~v~~--~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~ 231 (261)
.|. ...... ...+.+.+.|........ ....-+++......... ......-..+.+.-..+.+++.| ...
T Consensus 435 ~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~-~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~--~~a 511 (1205)
T KOG0613|consen 435 QPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP-MTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQY--TRA 511 (1205)
T ss_pred CCccccccccccccccCCcccccccCCCCcccc-ceeEeeccCCcccccccccccccchhhheeeccCCCccchh--hhh
Confidence 221 112222 234777778876333222 44444444433322222 22222223444444448888888 333
Q ss_pred EEcCCCcCCc
Q psy11549 232 GVNAKGRSLP 241 (261)
Q Consensus 232 a~N~~G~~~~ 241 (261)
..-..|...+
T Consensus 512 ~~~~~~k~~~ 521 (1205)
T KOG0613|consen 512 LRTLQGKPVP 521 (1205)
T ss_pred hhccCCCCCC
Confidence 3333343333
No 374
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=91.88 E-value=1.1 Score=25.58 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=29.6
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA 235 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~ 235 (261)
+.|..|+|+|.. ..+ . +.|.+..... ...+..+.+.+.. +..|.| .|.+.+.
T Consensus 5 isGTtVtlTCP~--~~~-~---i~W~~n~~~~-------~g~~~~~~~~~~~-e~~G~Y--~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPL--SGD-D---IKWKKNDQVS-------QGSDEKYLSLNHF-SSSGYY--HCTADNA 56 (65)
T ss_pred EeccEEEEECCC--CCC-C---ceEEeCCccC-------CCCCceEEeeccC-CCCceE--EEEeCCC
Confidence 569999999985 211 1 3343433222 1122455555544 778899 8877543
No 375
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=89.98 E-value=2.9 Score=25.32 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=31.2
Q ss_pred EEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecCCCC------cEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549 173 VHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNLDTP------AFTLEDLGLDGTVLMRVVISGVNAKGRS 239 (261)
Q Consensus 173 ~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~i~~~~l~~~~~Y~~~~~a~N~~G~~ 239 (261)
+.|.|.+ .+..|...+.|+++........ ........ .+.+.--.-.++..| +|.+.|+.-.+
T Consensus 2 ~~LtC~a--~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~y--tC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKT--SGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAI--ICRVDHESLNA 72 (83)
T ss_pred EEEEEEe--CCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEE--EEEEechhcCC
Confidence 5788997 5666655455555543321111 11111111 223332113345677 88898887644
No 376
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=88.82 E-value=0.52 Score=30.51 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=17.8
Q ss_pred eEEEccCCCCCCEeEEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSA 39 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~ 39 (261)
+|.|.+++.+|++.|.|..
T Consensus 75 ~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 75 NFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEcCCCHHHCeEEEEEe
Confidence 8999999999999999964
No 377
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=88.71 E-value=0.91 Score=37.45 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549 209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239 (261)
Q Consensus 209 ~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~ 239 (261)
....+.|..-.|+++..|.|++.+.+.-|..
T Consensus 258 ~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~ 288 (440)
T PF02010_consen 258 SSSNLVIDPGVLEPGSTYTFRLTVTDSSGSS 288 (440)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4466777766689999999999999887764
No 378
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=88.38 E-value=1.1 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=16.4
Q ss_pred eEEEccCCCCCCEeEEEEEEeCC
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTK 43 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~ 43 (261)
.|.|.....++...|+|.+....
T Consensus 49 ~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 49 YLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred EEEEccccCCCCCEEEEEEEEcC
Confidence 45555556678899999986553
No 379
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=87.92 E-value=1.4 Score=26.99 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=18.6
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCcc
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDL 199 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~ 199 (261)
+..+.+.|.. .++.|..-+.|+......
T Consensus 14 ~~~~~~~C~s--~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSS--SGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEE--EEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEe--CCeECCeEEEEEECCCce
Confidence 5789999986 677776655565554443
No 380
>KOG4258|consensus
Probab=87.73 E-value=2.4 Score=37.38 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=55.8
Q ss_pred cCCeEEEEeecCC-CCCCCeEEEEEEEeCCccceeE---EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceee
Q psy11549 169 TTSSVHISCTPGY-DGGLPQTFTLELYSASDLNLLV---NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIW 244 (261)
Q Consensus 169 ~~~~~~l~c~~~~-~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~ 244 (261)
..+.+.|.|..+. ++|.-..|.+.|+....+.... ...........+.+ |.+ |.|+++++|..-+|.+.+...
T Consensus 841 ~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~--l~~-G~y~~~vratSlaGng~~t~~ 917 (1025)
T KOG4258|consen 841 EMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKR--LNP-GNYSVRVRATSLAGNGSWTES 917 (1025)
T ss_pred CcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEe--cCC-CcEEEEEEEEeeccCCCCcCC
Confidence 5778889998654 4455566999988655542111 11112234455555 555 789999999999999998888
Q ss_pred eeeeecccccC
Q psy11549 245 DDFSMSGAHYA 255 (261)
Q Consensus 245 ~~~~~~~~~~~ 255 (261)
+.+...+.+..
T Consensus 918 ~~~~v~~~~~~ 928 (1025)
T KOG4258|consen 918 VIFYVSDEDGL 928 (1025)
T ss_pred cceEEecCccc
Confidence 87776655443
No 381
>KOG4597|consensus
Probab=87.59 E-value=1.1 Score=36.35 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=54.6
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEc---CCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFN---NSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV 144 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 144 (261)
.+-++++..+.|-+.|.+.+ .+.|.+- .....+. .+..+. .......|.|-+....|+|.|+|.+.+..|...
T Consensus 207 ~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hcccchhhcccccccCCcCc-eeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 36678899999999999988 7999742 1111111 111111 122344789999999999999999999988877
Q ss_pred eeEEEEE
Q psy11549 145 TPCLYQV 151 (261)
Q Consensus 145 ~~~~~~v 151 (261)
....+.+
T Consensus 285 rdv~c~s 291 (560)
T KOG4597|consen 285 RDVPCSS 291 (560)
T ss_pred ccceeee
Confidence 6444433
No 382
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=86.76 E-value=5.2 Score=31.47 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=18.4
Q ss_pred cEEEEEEEeeCCC-CceeEEEEc
Q psy11549 76 SVDIHCAVEADPP-ARSFKWKFN 97 (261)
Q Consensus 76 ~~~l~C~~~~~~~-~~~~~W~~~ 97 (261)
.++|.|.+.+.-| .+.+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999865 557899887
No 383
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=86.53 E-value=0.47 Score=31.48 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=20.9
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
.+|.+.....- .|+|+|.+.....+. ...+.|.+
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~eg-e~~i~Lk~ 119 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSREG-ETTIELKY 119 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTEEE-EEEEEEEE
T ss_pred EEEEEcchhcc-ccceEEEEEecCCCc-eEEEEEEE
Confidence 45777776555 999999997776544 44444444
No 384
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=86.46 E-value=1.9 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=29.4
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceee
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~ 62 (261)
++.+.+++.+|.|.|+|...-...+.... .|.|...|.+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH--~I~vrVmPKId 121 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDNESHKH--EILVRKAPKID 121 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCceeEEE--EEEEEEcccee
Confidence 68899999999999999987766565444 44555555544
No 385
>PHA03269 envelope glycoprotein C; Provisional
Probab=85.33 E-value=20 Score=29.74 Aligned_cols=77 Identities=9% Similarity=-0.028 Sum_probs=48.1
Q ss_pred eeEEEEecCCCCcCeEEEEEEEcC-CceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE--EEEE
Q psy11549 116 GSMLRYTPVTELDYGTLSCAAQNA-IGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT--FTLE 192 (261)
Q Consensus 116 ~~~l~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~--~~~~ 192 (261)
...|.|..+...+.|.|+-.+.+. .+.......++|....+|..-..-. ....|+...-.|.+ .+-+|.. ...|
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-PVL~Ge~YkAtC~v--A~YYPp~SvrlrW 364 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-PVLLGNPYAAYCKV--NKYYPPHSVIVKW 364 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-ccccCCCceEEEEe--eeecCCCceEEEE
Confidence 457999999999999998776532 2333444466676666664111000 11459999999997 5555643 4455
Q ss_pred EEe
Q psy11549 193 LYS 195 (261)
Q Consensus 193 ~~~ 195 (261)
+.+
T Consensus 365 f~n 367 (566)
T PHA03269 365 TSN 367 (566)
T ss_pred EeC
Confidence 555
No 386
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=85.03 E-value=7.4 Score=24.46 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=48.0
Q ss_pred ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecCC--CCcEEEcCCCCC--CccEEEEEEEEEcCCCcCCc
Q psy11549 168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNLD--TPAFTLEDLGLD--GTVLMRVVISGVNAKGRSLP 241 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~~~~l~--~~~~Y~~~~~a~N~~G~~~~ 241 (261)
...+.+..+|.++........|.+.|+......... ...... ...+.+...... ....|.+.+.+.|..|.-.+
T Consensus 10 ~~~~~m~CtW~~g~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ss~~~~i~~ 89 (99)
T PF09240_consen 10 YNLEYMNCTWEPGKEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNGSSSAGSIRS 89 (99)
T ss_dssp ETTTEEEEEEECCTTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEEEETTEEEEC
T ss_pred ECCEEEEEEECCCCCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEeccCCCccCC
Confidence 347888999998555555567888887765333222 332222 345566663342 23489999999999987665
Q ss_pred eeee
Q psy11549 242 VIWD 245 (261)
Q Consensus 242 s~~~ 245 (261)
....
T Consensus 90 ~~~~ 93 (99)
T PF09240_consen 90 SDQT 93 (99)
T ss_dssp EEEE
T ss_pred cceE
Confidence 5443
No 387
>PHA03286 envelope glycoprotein E; Provisional
Probab=84.93 E-value=13 Score=30.41 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=49.6
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee-----ceee--cCc-----------eeEEEeeCCCcEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA-----PICK--SDR-----------IVIVGASRSESVDIHC 81 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~-----p~~~--~~~-----------~~~~~~~~g~~~~l~C 81 (261)
+.|.|.+++.+++|.|+--.+|..+......+.|.|... |... ..+ ........|++..++-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 579999999999999999888887776556677777421 2111 000 0113355788887776
Q ss_pred EEee----CCCCceeEEEE
Q psy11549 82 AVEA----DPPARSFKWKF 96 (261)
Q Consensus 82 ~~~~----~~~~~~~~W~~ 96 (261)
.... .+-...+.|++
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEeecccCCCceEEEEEEE
Confidence 5541 12233788985
No 388
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=84.85 E-value=1.5 Score=27.38 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=25.0
Q ss_pred CCCCeeccCCC-CceEEEECCeEEEcc---CCCCCCEeEEEEEEeCC
Q psy11549 1 MAGGIPLAHNT-SARIILSNQSLVLQK---VSRQSAGTYKCSAINTK 43 (261)
Q Consensus 1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~---~~~~D~G~Y~C~~~~~~ 43 (261)
+|||+++.+.. ......+++++.+.. +..++...|+|.+....
T Consensus 37 ~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 37 LKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred EECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 47898886211 112223445544432 35678888999987653
No 389
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=84.47 E-value=3.4 Score=26.71 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCCCeeccCCCCceEEEEC-C------eEEEccCCCCCCE-eEEEEEEeCC
Q psy11549 1 MAGGIPLAHNTSARIILSN-Q------SLVLQKVSRQSAG-TYKCSAINTK 43 (261)
Q Consensus 1 ~~ng~~l~~~~~~~~~~~~-~------~L~i~~~~~~D~G-~Y~C~~~~~~ 43 (261)
+|||+++...........+ + +|.+.. ...|.| .|+|.+....
T Consensus 43 ~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 43 LKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 5899998532111111122 1 344443 445555 4999997764
No 390
>PHA03281 envelope glycoprotein E; Provisional
Probab=84.40 E-value=24 Score=29.78 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=47.6
Q ss_pred ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece--eecCc--------------eeEEEeeCCCcEEEEE
Q psy11549 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI--CKSDR--------------IVIVGASRSESVDIHC 81 (261)
Q Consensus 18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~--~~~~~--------------~~~~~~~~g~~~~l~C 81 (261)
..+.|.|.+++.+++|.|+--.+...|......+.|.|+..+. +..+. ........|++..+.-
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v 375 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM 375 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence 3468999999999999999877766565433356677764321 11110 0012345688777665
Q ss_pred EEeeC----CCCceeEEEE
Q psy11549 82 AVEAD----PPARSFKWKF 96 (261)
Q Consensus 82 ~~~~~----~~~~~~~W~~ 96 (261)
..... +-...+.|++
T Consensus 376 ~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 376 HLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEeeeccCCCceeEEEEEE
Confidence 54432 2234788985
No 391
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=84.25 E-value=5.7 Score=22.54 Aligned_cols=38 Identities=5% Similarity=-0.055 Sum_probs=23.2
Q ss_pred eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549 202 LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV 242 (261)
Q Consensus 202 ~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s 242 (261)
.|.........+.+.+ | +.|.|.|.|.|.+..|.....
T Consensus 20 ~W~~~~~~~~~~~~~~--L-~~G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 20 EWITLGSYSNSISYTN--L-PPGKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp SEEEESSTS-EEEEES-----SEEEEEEEEEEETTS-B-SS
T ss_pred eEEECCCCcEEEEEEe--C-CCEEEEEEEEEECCCCCcCcc
Confidence 3433333323788878 6 558999999999999855443
No 392
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=83.76 E-value=7.4 Score=23.46 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.0
Q ss_pred EEEEecCCCCcCeEEEEEEE
Q psy11549 118 MLRYTPVTELDYGTLSCAAQ 137 (261)
Q Consensus 118 ~l~i~~~~~~d~g~y~C~~~ 137 (261)
..........|+|.+.|.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEc
Confidence 46677888899999999994
No 393
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=83.55 E-value=0.77 Score=26.78 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=14.8
Q ss_pred cCCCCCCccEEEEEEEEE
Q psy11549 216 EDLGLDGTVLMRVVISGV 233 (261)
Q Consensus 216 ~~~~l~~~~~Y~~~~~a~ 233 (261)
.+-+|+++|+|.|+++|.
T Consensus 63 ~DY~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 63 SDYQLEPGGDYSFTIRAK 80 (80)
T ss_pred cceeccCCCceEEEEecC
Confidence 346699999999999873
No 394
>PHA03282 envelope glycoprotein E; Provisional
Probab=82.63 E-value=3.5 Score=33.62 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=30.6
Q ss_pred eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEEE
Q psy11549 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVK 56 (261)
Q Consensus 14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V~ 56 (261)
+....|++|.|.+++.+|+|.|+-.+........ ...+.|.|.
T Consensus 118 rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 118 RVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 4556688999999999999999998755544432 333555554
No 395
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=81.98 E-value=10 Score=23.75 Aligned_cols=73 Identities=10% Similarity=-0.057 Sum_probs=36.0
Q ss_pred cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCC-----cEEEcCCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549 169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTP-----AFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI 243 (261)
Q Consensus 169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~ 243 (261)
....+.+.|.. .++.|..-+.|+.................+ .|.+.-..-.++..+ +|.+.|..-......
T Consensus 14 ~~~~~va~C~s--~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~l--tC~v~h~al~~~~~~ 89 (95)
T cd07703 14 TIPVPVAKCVS--ANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEV--TCKVEHETLQEPQLL 89 (95)
T ss_pred CCccEEEEEEc--CCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEE--EEEEeCcccCCCeEE
Confidence 34567889987 667776655555542211111111111111 222222112344566 999999876554444
Q ss_pred ee
Q psy11549 244 WD 245 (261)
Q Consensus 244 ~~ 245 (261)
.+
T Consensus 90 ~~ 91 (95)
T cd07703 90 PV 91 (95)
T ss_pred EE
Confidence 43
No 396
>KOG4802|consensus
Probab=81.68 E-value=3.2 Score=33.22 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=29.1
Q ss_pred CcEEEcCCCCCCccEEEEEEEEEcCCCc---CCceeeee-eeecccccC
Q psy11549 211 PAFTLEDLGLDGTVLMRVVISGVNAKGR---SLPVIWDD-FSMSGAHYA 255 (261)
Q Consensus 211 ~~~~i~~~~l~~~~~Y~~~~~a~N~~G~---~~~s~~~~-~~~~~~~~~ 255 (261)
..+...+ +.|+..|+|++.|.|..|. +++|..-. ...+.+++.
T Consensus 209 ~~~~~t~--~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~ 255 (516)
T KOG4802|consen 209 NTYIFTD--MRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPS 255 (516)
T ss_pred ceeeeee--cCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcC
Confidence 3666777 9999999999999999874 44444433 334444443
No 397
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=81.61 E-value=10 Score=23.46 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=12.6
Q ss_pred CCeEEEEeecCCCCCCCeE
Q psy11549 170 TSSVHISCTPGYDGGLPQT 188 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~ 188 (261)
++.++|.|.+ .+..|..
T Consensus 14 ~~~~~L~C~a--~gF~P~~ 30 (93)
T cd07698 14 DGSLTLSCHA--TGFYPRD 30 (93)
T ss_pred CCcEEEEEEE--EEEeCCC
Confidence 5679999998 5556654
No 398
>PHA02982 hypothetical protein; Provisional
Probab=80.20 E-value=20 Score=26.08 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=44.6
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcE-EEEEEEeeCCCCceeEEEEc
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESV-DIHCAVEADPPARSFKWKFN 97 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~-~l~C~~~~~~~~~~~~W~~~ 97 (261)
.++|+|.++..+..|=|+|.+....+......-=|.|+.. . ....+.++.+. .+.|.+-....+. ..|.-+
T Consensus 99 ~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~------~-V~~~W~e~nNeT~V~CyVgS~~~dv-p~W~V~ 170 (251)
T PHA02982 99 SSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKE------D-ILYVVEEHNNETIITCFVGSKHGDV-PRFIVA 170 (251)
T ss_pred ceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecc------e-EEEEEEecCCeEEEEEEEEeccCCC-ccEEEe
Confidence 4699999999999999999998877665332333444211 0 11223344444 4678876655542 378665
Q ss_pred C
Q psy11549 98 N 98 (261)
Q Consensus 98 ~ 98 (261)
|
T Consensus 171 G 171 (251)
T PHA02982 171 G 171 (251)
T ss_pred e
Confidence 4
No 399
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=79.24 E-value=9.7 Score=21.87 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=35.1
Q ss_pred cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549 169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239 (261)
Q Consensus 169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~ 239 (261)
.+..+.+.... ..+.+..|.|.+.+ .. ..... ..+... ....|.|.+++.+.|..|..
T Consensus 10 ~g~~v~f~~~~--~~g~~~~y~W~fgd--~~----~~~~~--~~~t~t---y~~~G~y~V~ltv~n~~g~~ 67 (69)
T PF00801_consen 10 TGQPVTFTASS--SDGSPVTYSWDFGD--NG----TVSTG--SSVTHT---YSSPGTYTVTLTVTNGVGSA 67 (69)
T ss_dssp TTSEEEEEETT--TTSSECEEEEE-SS--ES----EEECS--SEEEEE---ESSSEEEEEEEEEEETTSEE
T ss_pred CCCEEEEEEEc--cCCCCeEEEEEECC--CC----ccccC--CCEEEE---cCCCeEEEEEEEEEECCCCc
Confidence 36677777665 55667778887655 11 11111 222211 34578999999999999854
No 400
>KOG0613|consensus
Probab=79.10 E-value=23 Score=33.09 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=87.2
Q ss_pred eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ 150 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 150 (261)
...+....+.|.......+ .+.|+.+.-.... . ......+.+.+....+.+.|+|...+..+.........
T Consensus 241 t~e~s~~~i~~~l~~~~G~-~~~~~~~~l~e~~---~-----~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~ 311 (1205)
T KOG0613|consen 241 TLEASDRKIQLTLRAPRGP-YSAHILGYLIEQR---K-----HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEE 311 (1205)
T ss_pred ccchhheeeeEEeecCCCc-hHHHHhcchhhhc---c-----cCCCccccccccCCccccceeeecccCCcccceeeeEE
Confidence 4456666777877777666 5666554321111 0 11122566777777888888888887766554422222
Q ss_pred EEeC---C-----------CC----CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-c-eeE---EEec
Q psy11549 151 VVLA---G-----------KP----QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-N-LLV---NLTN 207 (261)
Q Consensus 151 v~~~---~-----------~p----~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-~-~~~---~~~~ 207 (261)
+.+. . +| ..+....+....+..+++.|.. .+..+..-..++...... . ..+ ....
T Consensus 312 ~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1205)
T KOG0613|consen 312 APIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL--SGTQKPDEAQGYHGEEVSSESLGALPCPVGT 389 (1205)
T ss_pred eeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc--cCCcCCchheeeccccccccccccccccccc
Confidence 2111 1 11 1222334444557777788875 333333322222221111 1 011 1122
Q ss_pred CCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS 248 (261)
Q Consensus 208 ~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~ 248 (261)
.....+.+.++.......| +|.|.|..|.........+.
T Consensus 390 ~ts~~~~~~~~~~~e~~~~--~~~a~n~~g~~~~~~~~~vs 428 (1205)
T KOG0613|consen 390 VTSHTYTIKDAGPGEGYFT--RVPAVNKGGTEQTIAESTVS 428 (1205)
T ss_pred ccCcchhhhhcCccccccc--ccceeccCCcccccchhhcc
Confidence 3346677778555555556 99999999977766665554
No 401
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=78.24 E-value=13 Score=22.89 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=39.5
Q ss_pred EeeCCCcEEEEEEEeeCC----CCceeEEEEcCCccccccCCceE-EeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549 70 GASRSESVDIHCAVEADP----PARSFKWKFNNSGETLDVGSERF-SSGSRGSMLRYTPVTELDYGTLSCAAQ 137 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~ 137 (261)
.+..|++++..|.....- ....+.|..++. . ++..++ ...+..+..++.++.....-.|-|...
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~--~--iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE--K--IPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC--E--STCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCE--E--CChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 357899999999986331 233699987663 2 333333 456666788888887777666666643
No 402
>PHA03189 UL14 tegument protein; Provisional
Probab=76.51 E-value=33 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=17.1
Q ss_pred cCCCCcCeEEEEEEEcCCceEE
Q psy11549 123 PVTELDYGTLSCAAQNAIGTQV 144 (261)
Q Consensus 123 ~~~~~d~g~y~C~~~~~~~~~~ 144 (261)
++..+.+|.|.|...|......
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv 160 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLV 160 (348)
T ss_pred EEEecccceEEEEeccccceee
Confidence 5667789999999998765443
No 403
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=75.17 E-value=7.7 Score=32.07 Aligned_cols=131 Identities=12% Similarity=0.025 Sum_probs=18.1
Q ss_pred eEEEEecCCC-CcCeEEEEEEE-cCCceEEeeEEEEEEeCCCCCCCCcce---EEeecCCeEEEEeecCCCCCC-----C
Q psy11549 117 SMLRYTPVTE-LDYGTLSCAAQ-NAIGTQVTPCLYQVVLAGKPQPPQNCS---VRNETTSSVHISCTPGYDGGL-----P 186 (261)
Q Consensus 117 ~~l~i~~~~~-~d~g~y~C~~~-~~~~~~~~~~~~~v~~~~~p~~p~~~~---v~~~~~~~~~l~c~~~~~~~~-----p 186 (261)
..|.|..... ...+.|...+. .............+.+...|..+...- ........++|.-..+.|... .
T Consensus 38 ~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~ 117 (440)
T PF02010_consen 38 PQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSG 117 (440)
T ss_dssp SECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred eEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCc
Confidence 4677776554 33456666666 222222333344555544443332110 011123456666554433322 2
Q ss_pred eEEEEEEEeCCcccee------EEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC-cCCceeeeee
Q psy11549 187 QTFTLELYSASDLNLL------VNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG-RSLPVIWDDF 247 (261)
Q Consensus 187 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G-~~~~s~~~~~ 247 (261)
..|.|........... ..........+.|..-.+.++..|.|++.+....+ .+.....+.+
T Consensus 118 l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v 185 (440)
T PF02010_consen 118 LTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTV 185 (440)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEe
Confidence 4466664443322011 11223344677776666888888999999988887 4444444443
No 404
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=74.79 E-value=10 Score=26.33 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=24.7
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V 55 (261)
-|+|.+.+.+|+|.|.-++.-..... ..-+.+.+
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~-~d~F~~~v 158 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANK-ADVFRLSV 158 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCC-CcEEEEee
Confidence 59999999999999999987664333 33344433
No 405
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=73.48 E-value=48 Score=26.93 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=40.9
Q ss_pred EEeeCCCcE-EEEEEEeeCCCCceeEEEEcCCcc-cc----ccCCc------eEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549 69 VGASRSESV-DIHCAVEADPPARSFKWKFNNSGE-TL----DVGSE------RFSSGSRGSMLRYTPVTELDYGTLSCAA 136 (261)
Q Consensus 69 ~~~~~g~~~-~l~C~~~~~~~~~~~~W~~~~~~~-~~----~~~~~------~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 136 (261)
+.+..|+.. .|.|..+....+.++-..+.+... .. .+.+. ...-......+.+.+++.+|.|.|+|..
T Consensus 21 Ii~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCIF 100 (500)
T PHA02914 21 IFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCIF 100 (500)
T ss_pred EEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEEE
Confidence 444556665 888887766655455555532210 00 00000 0001123557889999999999999998
Q ss_pred EcC
Q psy11549 137 QNA 139 (261)
Q Consensus 137 ~~~ 139 (261)
...
T Consensus 101 YLn 103 (500)
T PHA02914 101 YLG 103 (500)
T ss_pred EeC
Confidence 754
No 406
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=72.58 E-value=21 Score=22.52 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=14.6
Q ss_pred ecCCeEEEEeecCCCCCCCe
Q psy11549 168 ETTSSVHISCTPGYDGGLPQ 187 (261)
Q Consensus 168 ~~~~~~~l~c~~~~~~~~p~ 187 (261)
..|..++|.|.+ .+..|.
T Consensus 13 ~~G~~vtv~C~v--~~v~P~ 30 (99)
T cd07689 13 EEGKPVTVKCEV--PDVYPF 30 (99)
T ss_pred cCCceEEEEEEe--cCcccC
Confidence 459999999998 666675
No 407
>KOG4597|consensus
Probab=71.15 E-value=4.7 Score=33.00 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=31.4
Q ss_pred CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
-..|.|-+....|+|-|+|.+.+..|.. .+.+.+.+.
T Consensus 256 tcql~ic~ewq~~a~w~tCs~rcg~g~~-~rdv~c~s~ 292 (560)
T KOG4597|consen 256 TCQLVICNEWQADAGWYTCSARCGAGFL-RRDVPCSSV 292 (560)
T ss_pred eeeEEEcchhhcCCCceeecccccccee-eccceeeee
Confidence 3479999999999999999999999987 556676665
No 408
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=70.83 E-value=23 Score=22.05 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=16.3
Q ss_pred CCeEEEEeecCCCCCCCeE-EEEEEEe
Q psy11549 170 TSSVHISCTPGYDGGLPQT-FTLELYS 195 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~-~~~~~~~ 195 (261)
+...+|.|.+ .+-.|.. ...|+++
T Consensus 14 ~~~~~L~C~~--~gFyP~~i~v~W~~~ 38 (94)
T cd05766 14 SHPHLLVCHV--WGFYPPEITVKWFKN 38 (94)
T ss_pred CCCeEEEEEE--eeecCCCCEEEEEEC
Confidence 6789999998 6667755 3344444
No 409
>PHA03052 Hypothetical protein; Provisional
Probab=69.21 E-value=20 Score=20.73 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=22.8
Q ss_pred EEeeCCCcEEEEEEEeeCCC--CceeEEEEcCC
Q psy11549 69 VGASRSESVDIHCAVEADPP--ARSFKWKFNNS 99 (261)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~ 99 (261)
+.+..|.++++.|.+.-.++ -..+.|.-|+.
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~ 39 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGM 39 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCCc
Confidence 66778999999999875544 22577877663
No 410
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=68.33 E-value=22 Score=20.92 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=32.1
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~ 239 (261)
+..+.+.+....+ +....|.|.+.+.... .. ..... . ....|.|.+++.+.|..|..
T Consensus 14 ~~~v~f~~~~~~~-~~~~~~~W~fgdg~~~-------~~--~~~~~-~--y~~~G~y~v~l~v~n~~g~~ 70 (79)
T smart00089 14 GESVTFTATSSDD-GSIVSYTWDFGDGTSS-------TG--PTVTH-T--YTKPGTYTVTLTVTNAVGSA 70 (79)
T ss_pred CCEEEEEEECCCC-CCeEEEEEEeCCCCcc-------CC--CCEEE-E--eCCCcEEEEEEEEEcCCCcE
Confidence 5566666664222 3445566655332111 11 12221 1 45678999999999999933
No 411
>PHA03271 envelope glycoprotein C; Provisional
Probab=67.24 E-value=34 Score=27.89 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=43.6
Q ss_pred ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE--EEEE
Q psy11549 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT--FTLE 192 (261)
Q Consensus 115 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~--~~~~ 192 (261)
....+.|.++...+.|.|.-...+..........+.+.+...|.......-....|+...-.|.+ .+-+|.. ...|
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~v--AnYYPP~SvrlrW 282 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIV--RHFYPPGSVYVSW 282 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEe--eeecCCCceEEEE
Confidence 35678999999999997765555544443333344444433332110000011358888888887 4555533 4445
Q ss_pred EEe
Q psy11549 193 LYS 195 (261)
Q Consensus 193 ~~~ 195 (261)
+.+
T Consensus 283 f~n 285 (490)
T PHA03271 283 RQN 285 (490)
T ss_pred EeC
Confidence 444
No 412
>PHA03290 envelope glycoprotein I; Provisional
Probab=66.56 E-value=22 Score=27.86 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=26.6
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~ 57 (261)
-|+|.+.+.+|+|.|.-++.-..... +.-+.|.+..
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ldga~~-sDvF~lsv~V 165 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLDHSRL-FDGFFLGLNV 165 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcc-cceEEEEEEE
Confidence 69999999999999999987664433 3345555553
No 413
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=65.00 E-value=32 Score=21.59 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=34.0
Q ss_pred EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe-C---CceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS-G---SRGSMLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
+...|.+....+|..|.|.-+=++.. + ...... . .-.+.+.+......|.-..+|.+.....
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e--tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E--FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e--eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 45689855444444999974322111 0 000000 1 1133566677777788899999987533
No 414
>PHA03240 envelope glycoprotein M; Provisional
Probab=64.70 E-value=13 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=19.3
Q ss_pred ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 115 RGSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 115 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
..+.|.|.++..+|.|+|.-.-....|.
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCC
Confidence 3557889999999999985444433343
No 415
>PHA02935 Hypothetical protein; Provisional
Probab=63.19 E-value=29 Score=24.94 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=36.4
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEee
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEA 85 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~ 85 (261)
-|-|+.++.+|+|.|.-...-..|.....+..+.|+..- +............--.+.+.|+...
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisvkani-idltgrvryltrnycevkirceiks 166 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANI-IDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEeee-EeccceeeeeccccEEEEEEEEEee
Confidence 478899999999999877666666654444445444211 1111111111223345677887654
No 416
>PHA03273 envelope glycoprotein C; Provisional
Probab=61.48 E-value=75 Score=26.42 Aligned_cols=77 Identities=14% Similarity=0.025 Sum_probs=47.1
Q ss_pred eEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE--EEEEEE
Q psy11549 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT--FTLELY 194 (261)
Q Consensus 117 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~--~~~~~~ 194 (261)
..|.|..+...+.|.|+-...+..+.......++|....+|..-.... ....|+...-.|.+ .+-+|.. ...|+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~-PvL~Ge~y~A~C~a--a~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH-PSLKGENYRAVCVV--ASYFPHSSVKLRWYK 274 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-ccccCCCceEEEEe--eeecCCCceEEEEEe
Confidence 459999999999999997766654444444456665555554111000 11358889999987 4555533 444555
Q ss_pred eC
Q psy11549 195 SA 196 (261)
Q Consensus 195 ~~ 196 (261)
+.
T Consensus 275 dg 276 (486)
T PHA03273 275 NA 276 (486)
T ss_pred CC
Confidence 43
No 417
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=60.94 E-value=38 Score=21.12 Aligned_cols=68 Identities=6% Similarity=-0.075 Sum_probs=34.0
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCC------cEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTP------AFTLEDLGLDGTVLMRVVISGVNAKGRSLPV 242 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s 242 (261)
.....+.|.+ .++.|..-+.|++...... .......... .|.+.-..-.++..| +|.+.|..-.....
T Consensus 15 ~~~~va~C~s--~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~--tC~v~h~~l~~~~~ 88 (95)
T cd05719 15 EPVTVATCVS--ANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKEL--TCVVSHPTLQEPQR 88 (95)
T ss_pred CccEEEEEEC--CCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEE--EEEEeCcccCCCeE
Confidence 5567888997 6777766555555421111 1111111112 222222112344556 99999987654433
No 418
>KOG4258|consensus
Probab=60.82 E-value=71 Score=28.97 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=46.7
Q ss_pred EEEEecCCCCcCeEEEEEEEcC--CceEE--eeEEEEE-EeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEE
Q psy11549 118 MLRYTPVTELDYGTLSCAAQNA--IGTQV--TPCLYQV-VLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTL 191 (261)
Q Consensus 118 ~l~i~~~~~~d~g~y~C~~~~~--~~~~~--~~~~~~v-~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~ 191 (261)
-+.+..+.+...+.|...+... .+... .+....+ ...+.|++|...-......+.+.|.|.++...+.-+. |.+
T Consensus 567 ~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv 646 (1025)
T KOG4258|consen 567 GFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLV 646 (1025)
T ss_pred ceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEE
Confidence 3555666676667666665421 11111 1212222 2346788888766666677899999998765555544 666
Q ss_pred EEEeCCc
Q psy11549 192 ELYSASD 198 (261)
Q Consensus 192 ~~~~~~~ 198 (261)
.|.....
T Consensus 647 ~wer~~~ 653 (1025)
T KOG4258|consen 647 VWERQAE 653 (1025)
T ss_pred EEEeccC
Confidence 5555433
No 419
>PHA03283 envelope glycoprotein E; Provisional
Probab=57.04 E-value=50 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=29.5
Q ss_pred ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG 155 (261)
Q Consensus 115 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~ 155 (261)
....|.|.+++.+++|.|+....+..+ .....+.|.+..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~--~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGM--MKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCc--eEEEEEEEEecC
Confidence 345799999999999999999998665 332355566655
No 420
>PHA03270 envelope glycoprotein C; Provisional
Probab=56.74 E-value=1.1e+02 Score=25.23 Aligned_cols=77 Identities=12% Similarity=-0.021 Sum_probs=49.6
Q ss_pred EEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE--EEEEEEe
Q psy11549 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT--FTLELYS 195 (261)
Q Consensus 118 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~--~~~~~~~ 195 (261)
.|.|..+.....|.|+-...+..+.......++|....+|..-..-. ....|+...-.|.+ .+-+|.. ...|+.+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~-PvL~Ge~Y~AtC~v--a~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH-AVLEGEPFGATCVA--ANYYPGDRAAFRWFEG 259 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-ccccCCCceEEEEe--eeecCCCceEEEEEeC
Confidence 59999999999999999987766555544456666555554111000 11358899999997 5555643 4455555
Q ss_pred CC
Q psy11549 196 AS 197 (261)
Q Consensus 196 ~~ 197 (261)
..
T Consensus 260 g~ 261 (466)
T PHA03270 260 GD 261 (466)
T ss_pred Cc
Confidence 44
No 421
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=56.12 E-value=22 Score=20.40 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=23.4
Q ss_pred EEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 78 DIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
+|.|..... ..+.||.|+.. .+.+... .+.+.. -.++|+|.-+.
T Consensus 2 tltC~s~~s---LPiswYcN~TR-LlRlt~~---------Tlt~~~----ltcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNAS---LPISWYCNGTR-LLRLTQQ---------TLTVVT----LTCNFTCVGQS 45 (71)
T ss_pred ceecCCCCC---CcccEEECCce-eeeecCC---------eEeeee----eeEEeeecCCC
Confidence 355654432 14899998853 2222211 244433 24789998654
No 422
>PHA03289 envelope glycoprotein I; Provisional
Probab=54.00 E-value=40 Score=26.36 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=26.1
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
-|+|.+.+.+|+|.|.-++.-..... +.-+.+.+.
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~~-sDvF~lsv~ 157 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRNK-SDIFRTSVF 157 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcc-CceEEEEEE
Confidence 69999999999999999987665433 334555554
No 423
>KOG4152|consensus
Probab=53.41 E-value=19 Score=30.16 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=28.9
Q ss_pred CCCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549 220 LDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA 252 (261)
Q Consensus 220 l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~ 252 (261)
|..+.-|.|+|.|.|..|.+.+|.+++..+..+
T Consensus 654 lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~p 686 (830)
T KOG4152|consen 654 LVTGQAYRFRVTAINGKGPGPASTILKLKTCAP 686 (830)
T ss_pred cccccceeeeeeeeeccCCCchhhheeeeeccC
Confidence 777888999999999999999999998876543
No 424
>PHA03042 CD47-like protein; Provisional
Probab=52.94 E-value=52 Score=25.16 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=16.8
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEA 46 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~ 46 (261)
+|++... .+=.|+|+|.|.+...+.
T Consensus 72 SL~~~f~-~~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 72 SLKFNFS-KNLSGNYTCEAINKFNKI 96 (286)
T ss_pred EEEEecc-ccCCCceeEEEeecccCc
Confidence 3555444 456999999997765443
No 425
>PHA03292 envelope glycoprotein I; Provisional
Probab=51.33 E-value=49 Score=26.56 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=26.2
Q ss_pred CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
.-|.|.+.+.+|+|.|.-++.-..... ..-+.|.+.
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~-aDvF~lsvf 163 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPT-ADVFGLSAF 163 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCcc-CceeEEEEE
Confidence 369999999999999999987665443 233455443
No 426
>PHA03291 envelope glycoprotein I; Provisional
Probab=48.96 E-value=52 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=26.5
Q ss_pred eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
-|+|.+...+|+|.|.-++.-..... ..-+.|-+.
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat~-adlF~lg~~ 164 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGATN-ASLFPLGLA 164 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCcc-cceEEEeee
Confidence 69999999999999999987665444 234555555
No 427
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=47.97 E-value=2e+02 Score=25.57 Aligned_cols=165 Identities=6% Similarity=0.019 Sum_probs=90.4
Q ss_pred eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC--C--ceEEee
Q psy11549 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA--I--GTQVTP 146 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~--~~~~~~ 146 (261)
...|+.+.+...+.|.... .+...-.|. ... ..-+.... .+ +..+..+|.|...+.-. . +.-...
T Consensus 302 ql~g~~I~ika~a~GG~~l-lYrf~I~G~--~~e--~~~Y~~~n---~~---~w~P~~~G~Y~I~v~VKDk~S~~eyD~~ 370 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKEL-LYRFIIKGK--ESE--DSGYIRNN---IY---TWKPKIAGKYSITLWVKDISSKGEYEDK 370 (667)
T ss_pred eecCceEEEEEEecCCCce-EEEEEECCc--EEe--eccccccc---eE---EEeeCCCceEEEEEEEEcCcCcccccce
Confidence 3578899999988876543 333323321 111 11111111 22 23355688887775432 2 112223
Q ss_pred EEEEEEeCCCCCCCCc-ceEE------eecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCC
Q psy11549 147 CLYQVVLAGKPQPPQN-CSVR------NETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLG 219 (261)
Q Consensus 147 ~~~~v~~~~~p~~p~~-~~v~------~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (261)
..+...+...+..|.. ..+. ...|+.+.+.+.+ .++....|.++.+..+..-... .-.....+...
T Consensus 371 ~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a--~gg~~~lY~f~ik~ng~~ve~~--~Y~~~~~~~f~--- 443 (667)
T PRK14081 371 SSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIA--EGGTNLRYSFIIKKDGKEEEKI--DYGKNNWVNFI--- 443 (667)
T ss_pred EEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEe--cCCCeEEEEEEEEECCEEEEEe--ecccccEEEEE---
Confidence 3455555554444421 1111 1358999999987 6666777777776655542222 22222333322
Q ss_pred CCCccEEEEEEEEEcCCCcCCceeeeeeeecccc
Q psy11549 220 LDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAH 253 (261)
Q Consensus 220 l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~~ 253 (261)
....|.|++.+.|.|.....+....-.+.....+
T Consensus 444 P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e 477 (667)
T PRK14081 444 PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE 477 (667)
T ss_pred ECCCeeEEEEEEEecccCchhcccceEEEEEEec
Confidence 4778999999999999987776666655544333
No 428
>PHA03240 envelope glycoprotein M; Provisional
Probab=47.81 E-value=34 Score=24.96 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=27.3
Q ss_pred eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc---eeeeEEEEEE
Q psy11549 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA---TSNQLKLRVK 56 (261)
Q Consensus 14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~---~s~~~~l~V~ 56 (261)
...-.+++|.|.++..+|+|+|.-.-....|.. ...-++|.|.
T Consensus 99 ~y~C~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~r 144 (258)
T PHA03240 99 LYECHNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLILR 144 (258)
T ss_pred EEEeccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEeee
Confidence 344568899999999999999954332222322 1224566664
No 429
>PHA03282 envelope glycoprotein E; Provisional
Probab=47.28 E-value=52 Score=27.36 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.2
Q ss_pred EEEEecCCCCcCeEEEEEEEcCCc
Q psy11549 118 MLRYTPVTELDYGTLSCAAQNAIG 141 (261)
Q Consensus 118 ~l~i~~~~~~d~g~y~C~~~~~~~ 141 (261)
+|.|.++.++|+|.|+..+.....
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~ 148 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPN 148 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCC
Confidence 599999999999999999755433
No 430
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=47.02 E-value=73 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=23.3
Q ss_pred CCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549 209 DTPAFTLEDLGLDGTVLMRVVISGVNAK 236 (261)
Q Consensus 209 ~~~~~~i~~~~l~~~~~Y~~~~~a~N~~ 236 (261)
..+.++|.+ |.+++.|.|.|.|.|..
T Consensus 13 ~~t~~t~~~--L~p~t~YyfdVF~vn~~ 38 (300)
T PF10179_consen 13 QKTNQTLSG--LKPDTTYYFDVFVVNQL 38 (300)
T ss_pred CCceEEecc--CCCCCeEEEEEEEEECC
Confidence 347899999 99999999999999985
No 431
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=45.91 E-value=62 Score=19.04 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=33.8
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549 170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241 (261)
Q Consensus 170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~ 241 (261)
+..+.+.+..... +....|.|.+... .. . .... ..... . ....|.|.+++.+.|..|.+..
T Consensus 14 ~~~v~~~~~~~~~-~~~~~~~W~fgdg-~~--~--~~~~--~~~~~-~--y~~~G~y~v~l~v~d~~g~~~~ 74 (81)
T cd00146 14 GASVTFSASDSSG-GSIVSYKWDFGDG-EV--S--SSGE--PTVTH-T--YTKPGTYTVTLTVTNAVGSSST 74 (81)
T ss_pred CccEEEEEEeCCC-CCEEEEEEEeCCC-Cc--c--ccCC--CceEE-E--cCCCcEEEEEEEEEeCCCCEEE
Confidence 5677777775222 2445566665432 11 0 0110 11211 1 4567899999999999876543
No 432
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=45.90 E-value=60 Score=22.71 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=22.9
Q ss_pred eEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 117 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
..|.|.+...+|+|.|..+++-.......
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d 152 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKAD 152 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCCc
Confidence 36999999999999999999865443333
No 433
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=45.09 E-value=1.2e+02 Score=21.97 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=33.1
Q ss_pred EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549 166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG 232 (261)
Q Consensus 166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a 232 (261)
....|+.+.++.....+|...+.-.+.|+..+...... .+.....-.+ --.+.+..-|.|+|+|.|
T Consensus 22 KrvvGe~v~V~Adif~DGHD~l~A~l~~r~~~~~~w~~vpM~~~gnDrW-~a~f~~~~~G~~~f~VeA 88 (187)
T PF11896_consen 22 KRVVGEPVPVSADIFRDGHDALAAELLWRHPGEREWQEVPMTPLGNDRW-EASFTPDRPGRYEFRVEA 88 (187)
T ss_dssp EEETT-EEEEEEEE--SSSS-EEEEEEEE-TTS-B----B-EESTS-EE-EEEEE--SSEEEEEEEEE
T ss_pred eeecCCeEEEEEEEEecCCCcEEEEEEEECCCCCcceeeccccCCCCEE-EEEEECCCceeEEEEEEE
Confidence 33569999999988778888888677666655442111 1111111111 111236677999999987
No 434
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=45.01 E-value=35 Score=18.20 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=12.7
Q ss_pred CccEEEEEEEEEcCCC
Q psy11549 222 GTVLMRVVISGVNAKG 237 (261)
Q Consensus 222 ~~~~Y~~~~~a~N~~G 237 (261)
..|.|.|.+.|.+..|
T Consensus 34 ~~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 34 QPGTYTFTVTATDGSG 49 (49)
T ss_pred cccEEEEEEEEEcCCC
Confidence 3378999999988765
No 435
>PLN02533 probable purple acid phosphatase
Probab=44.99 E-value=1.8e+02 Score=24.21 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=38.1
Q ss_pred CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-ceeE-----EEe------cCCCCcEEEcCCCCCC
Q psy11549 155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-NLLV-----NLT------NLDTPAFTLEDLGLDG 222 (261)
Q Consensus 155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-~~~~-----~~~------~~~~~~~~i~~~~l~~ 222 (261)
..+..|..+.+.-...+.+.++|.-... ..+ .+.|...... .... ... ...-....|.+ |++
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~~~-~~~---~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~--L~p 112 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQDS-IPP---SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGP--LKP 112 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECCCC-CCC---EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCC--CCC
Confidence 3455677776665557789999996322 112 2333321111 0000 000 00113457889 999
Q ss_pred ccEEEEEEE
Q psy11549 223 TVLMRVVIS 231 (261)
Q Consensus 223 ~~~Y~~~~~ 231 (261)
++.|.++|-
T Consensus 113 ~T~Y~Yrvg 121 (427)
T PLN02533 113 NTVYYYKCG 121 (427)
T ss_pred CCEEEEEEC
Confidence 999999884
No 436
>KOG0200|consensus
Probab=44.13 E-value=2.3e+02 Score=25.02 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=60.9
Q ss_pred eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE-EEe-eceeecCceeEEEeeCCCcEEEEEEEeeCCCCce
Q psy11549 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR-VKY-APICKSDRIVIVGASRSESVDIHCAVEADPPARS 91 (261)
Q Consensus 14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~-V~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 91 (261)
........+.+..+..+|.|.|+|.+.+ . ...+.+. ... .+..............+.+..+ +...+.+ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~ 77 (609)
T KOG0200|consen 7 ETRINHWFLIIDSVVPGDKGFYTCLVSN--I---NLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQP-F 77 (609)
T ss_pred eeeeccceEEEEEEEecCCccEEEEEec--C---ceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCC-c
Confidence 3444566899999999999999999988 1 1122222 111 1111111111122334445555 2222233 5
Q ss_pred eEEEEcCCccc-cccCC--------------ceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549 92 FKWKFNNSGET-LDVGS--------------ERFSSGSRGSMLRYTPVTELDYGTLSCAAQN 138 (261)
Q Consensus 92 ~~W~~~~~~~~-~~~~~--------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 138 (261)
+.|........ ..... .+.. ......+.+.++...+.+.|.|...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 78 IKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred ceeeeeecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 66764331100 00000 0001 33455788889999999999999876
No 437
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=43.19 E-value=82 Score=19.84 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=26.4
Q ss_pred CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVIS 231 (261)
Q Consensus 159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~ 231 (261)
.|..+++ ..|..++|.+.. .+..+..+.+. +.. ............+++.. ...|.|+|.|.
T Consensus 33 ~P~~i~v--~~G~~v~l~~~N--~~~~~h~~~i~----~~~-~~~~l~~g~~~~~~f~~---~~~G~y~~~C~ 93 (104)
T PF13473_consen 33 SPSTITV--KAGQPVTLTFTN--NDSRPHEFVIP----DLG-ISKVLPPGETATVTFTP---LKPGEYEFYCT 93 (104)
T ss_dssp ES-EEEE--ETTCEEEEEEEE---SSS-EEEEEG----GGT-EEEEE-TT-EEEEEEEE----S-EEEEEB-S
T ss_pred ecCEEEE--cCCCeEEEEEEE--CCCCcEEEEEC----CCc-eEEEECCCCEEEEEEcC---CCCEEEEEEcC
Confidence 3443444 458888888885 23333223221 111 11122333333444433 55678999997
No 438
>KOG4228|consensus
Probab=42.88 E-value=52 Score=30.58 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=58.7
Q ss_pred EEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCC
Q psy11549 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDT 210 (261)
Q Consensus 131 ~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 210 (261)
.|+|.+....+..... ..+.+...|..+....+.......+.+.|..... .+..|.+.++..... ... ......
T Consensus 1 ~Y~~~~~~~~~~~~~~--~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t--~~~~y~v~~~~~~s~-~~~-~~~~~~ 74 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELI--TYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST--WPNYYQVIFKALSSG-YGY-IDVDLT 74 (1087)
T ss_pred CeeeeecccCCCccce--EEEEecCCCCCCCCcccccccccceeehhhccCC--ChhhhheeeeEeccC-cce-eeccce
Confidence 4899998877766663 3344445555555555655567777777765222 343455554443333 111 111111
Q ss_pred CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS 248 (261)
Q Consensus 211 ~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~ 248 (261)
..+.+.- +.+...|++ .+.|..|.+..+.+..-.
T Consensus 75 ~~~s~~~--~~~~~~~~~--~evnt~~~a~~~~~~~~r 108 (1087)
T KOG4228|consen 75 TRLSYPC--LSPPSFLEL--VEVNTIGRAPFQCPVAPR 108 (1087)
T ss_pred eecccCC--CCCcchhhh--hhcccccccccccccCCc
Confidence 2344444 555556644 788888887777665433
No 439
>KOG4802|consensus
Probab=37.84 E-value=2.3e+02 Score=23.48 Aligned_cols=119 Identities=14% Similarity=0.193 Sum_probs=62.9
Q ss_pred EEEEecCCCCcCeEEEEEEEcCCceE---EeeEEEEEE-eCCCCCCCCcceEEee--cCCe-EEEEeecCCCCCCCeE-E
Q psy11549 118 MLRYTPVTELDYGTLSCAAQNAIGTQ---VTPCLYQVV-LAGKPQPPQNCSVRNE--TTSS-VHISCTPGYDGGLPQT-F 189 (261)
Q Consensus 118 ~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~~~v~-~~~~p~~p~~~~v~~~--~~~~-~~l~c~~~~~~~~p~~-~ 189 (261)
......+.+..-+.|...+.|..|.. ..+..+... -..+|.+|.++.+-.. .|.. ..|.|.+ .....|+. |
T Consensus 210 ~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P-~~sdlPv~~Y 288 (516)
T KOG4802|consen 210 TYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCP-SKSDLPVEKY 288 (516)
T ss_pred eeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCC-CCCCCcceee
Confidence 45566666666667777777654432 222233332 2245567777766532 2332 3455665 33445643 5
Q ss_pred EEEEEe-CCccceeE----EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549 190 TLELYS-ASDLNLLV----NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL 240 (261)
Q Consensus 190 ~~~~~~-~~~~~~~~----~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~ 240 (261)
.+.|-. .......+ .... ....+.|.. |.|+..|.+.+.|..-.|.++
T Consensus 289 ki~Ws~~v~s~k~~m~tks~~~k-~thq~si~~--L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 289 KITWSLYVNSAKASMITKSSYVK-DTHQFSIKE--LLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred EEEeehhhhhhhhhcccccceee-ccchhhhhh--cCCCCeEEEEEEEEEeccCcc
Confidence 443322 11111111 1111 112445889 999999999999988887443
No 440
>KOG3611|consensus
Probab=37.79 E-value=35 Score=30.49 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=28.1
Q ss_pred EEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 15 ~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
.....+.+.+..++..|.|.|.|.+....-......+.+.+.
T Consensus 607 ~~~~~G~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~~ 648 (737)
T KOG3611|consen 607 SRTDEGGLVLLSVQKLDGGTYPCYADESSFVSTVISVNLHVA 648 (737)
T ss_pred eecccCceeEEEEeeccCcccccccccCccccceEEEeeeec
Confidence 333456699999999999999999976543332333444443
No 441
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=37.34 E-value=1.3e+02 Score=20.32 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=19.6
Q ss_pred CCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549 220 LDGTVLMRVVISGVNAKGRSLPVIWDDFSM 249 (261)
Q Consensus 220 l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~ 249 (261)
...+|.|+++|...|..|.+... .+++..
T Consensus 79 ~~~gG~y~~~VeLCN~~GCS~S~-~~~V~V 107 (133)
T PF08329_consen 79 VTKGGRYQMQVELCNADGCSTSA-PVEVVV 107 (133)
T ss_dssp E-S-EEEEEEEEEEETTEEEE----EEEEE
T ss_pred ecCCCEEEEEEEEECCCCcccCC-CEEEEE
Confidence 67899999999999999977654 555443
No 442
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.51 E-value=32 Score=28.63 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=17.2
Q ss_pred CeEEEccCCCCCCEeEEEEEEeC
Q psy11549 20 QSLVLQKVSRQSAGTYKCSAINT 42 (261)
Q Consensus 20 ~~L~i~~~~~~D~G~Y~C~~~~~ 42 (261)
-.|++.++..+++|.|.|.+.-+
T Consensus 269 ~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 269 VDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp SSEEESS--GGG-EEEEEEEEET
T ss_pred cceEecCCCcccCceEEEEEEEC
Confidence 38999999999999999988543
No 443
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=33.55 E-value=2e+02 Score=21.29 Aligned_cols=94 Identities=13% Similarity=0.287 Sum_probs=43.7
Q ss_pred CCCCeeccCCC--CceEEEECC------eEEE-ccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEe
Q psy11549 1 MAGGIPLAHNT--SARIILSNQ------SLVL-QKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGA 71 (261)
Q Consensus 1 ~~ng~~l~~~~--~~~~~~~~~------~L~i-~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~ 71 (261)
|+||.++.+.- .+.....+| +|.+ .+...+-.=+.+|.+.=..+...+. +..-...|.....+...+..
T Consensus 12 f~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~--r~~a~~~P~Vy~~P~vsv~F 89 (211)
T PF02124_consen 12 FEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSET--RFNATATPSVYPKPRVSVRF 89 (211)
T ss_pred EECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeee--EeecccccceecCCEEEEEe
Confidence 56888886321 111112222 5555 3334455567799874332221111 11111223333333333445
Q ss_pred eCCCcEEEEEEEeeCCCC-ceeEEEEcCC
Q psy11549 72 SRSESVDIHCAVEADPPA-RSFKWKFNNS 99 (261)
Q Consensus 72 ~~g~~~~l~C~~~~~~~~-~~~~W~~~~~ 99 (261)
..| ..-|.+.--|.. ..+.|.-++.
T Consensus 90 ~~g---~AVC~A~CVP~~~v~l~W~v~d~ 115 (211)
T PF02124_consen 90 EDG---YAVCTARCVPRGNVTLRWSVGDD 115 (211)
T ss_pred cCC---EEEEEcceeeCCCeEEEEEECCc
Confidence 445 334666555532 4899987664
No 444
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=32.77 E-value=26 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.6
Q ss_pred CCCccEEEEEEEEEcCC
Q psy11549 220 LDGTVLMRVVISGVNAK 236 (261)
Q Consensus 220 l~~~~~Y~~~~~a~N~~ 236 (261)
....|.|.|+..|.|.-
T Consensus 9 kdk~Ge~rfrlkA~N~e 25 (59)
T COG3422 9 KDKAGEYRFRLKAANGE 25 (59)
T ss_pred EcCCCcEEEEEEccCcc
Confidence 46778999999997754
No 445
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=32.26 E-value=1.4e+02 Score=19.01 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=15.3
Q ss_pred CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeC
Q psy11549 2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINT 42 (261)
Q Consensus 2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~ 42 (261)
++|+++.+-..-.....+..+.|+.++++ .|.|+-+....
T Consensus 32 ~~g~pvsGl~~l~f~~~g~~vtls~itE~-~GvYtATl~Gt 71 (99)
T PF09134_consen 32 ANGNPVSGLSVLAFVQDGVPVTLSPITEN-PGVYTATLKGT 71 (99)
T ss_dssp TTS-B--S--SEEEEEEES--EE---EE--SS-EEEEEE-S
T ss_pred CCCCcccCceeEEEEccCCCcEEcccccc-CCEEEEEEEcc
Confidence 46777765443222334456888888765 48898876443
No 446
>PHA03290 envelope glycoprotein I; Provisional
Probab=25.03 E-value=2.2e+02 Score=22.73 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=22.4
Q ss_pred eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142 (261)
Q Consensus 116 ~~~l~i~~~~~~d~g~y~C~~~~~~~~ 142 (261)
.-.|.|.+...+|+|.|..+++-....
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~ 154 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSR 154 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCc
Confidence 347899999999999999999875443
No 447
>KOG1026|consensus
Probab=24.86 E-value=2.1e+02 Score=25.99 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=23.8
Q ss_pred EeeCCCcEEEEEEEeeCCCCceeEEEEcC
Q psy11549 70 GASRSESVDIHCAVEADPPARSFKWKFNN 98 (261)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~ 98 (261)
.+..|..+++.|...+.+.+ .+.|+..+
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp-~~~~~~~~ 230 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVP-CHYWFPNC 230 (774)
T ss_pred hhcccchheeeeecccCCCc-ceeeeccc
Confidence 46678999999999999988 78998765
No 448
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=24.82 E-value=1.5e+02 Score=17.01 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=12.8
Q ss_pred eeCCCcEEEEEEEeeCCCCceeEEEE
Q psy11549 71 ASRSESVDIHCAVEADPPARSFKWKF 96 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~~~~~~~~W~~ 96 (261)
+..|++++|. +. +...+.|++
T Consensus 2 v~~G~N~TL~----Gp-~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GP-PDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CC-CCCceEEEE
Confidence 4467788873 33 322588984
No 449
>PF15096 G6B: G6B family
Probab=24.81 E-value=56 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=16.4
Q ss_pred CCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549 27 VSRQSAGTYKCSAINTKGEATSNQLKLRVK 56 (261)
Q Consensus 27 ~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~ 56 (261)
+...|+|+|.|....... |+ ..|.|.
T Consensus 81 Ls~GDSGTFfCkGr~e~E---SR-T~LhVL 106 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQEEE---SR-TVLHVL 106 (224)
T ss_pred hhcCCccceEecCccccc---ce-eeeeee
Confidence 356999999998544321 33 245665
No 450
>PHA03286 envelope glycoprotein E; Provisional
Probab=24.61 E-value=4.3e+02 Score=22.27 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549 113 GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL 153 (261)
Q Consensus 113 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~ 153 (261)
......|.|.+++.+.+|.|+-...|..+..... .+.|.+
T Consensus 123 t~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~-vflVtV 162 (492)
T PHA03286 123 TGRGKELTILNASSQNAGIYIRYSRNGTRTAVMD-VLVVWV 162 (492)
T ss_pred cCCCCceEEeeccccccceEEEEEcCCCCcEEEE-EEEEEE
Confidence 3344579999999999999999999876554433 333444
No 451
>PHA03289 envelope glycoprotein I; Provisional
Probab=24.09 E-value=2.2e+02 Score=22.60 Aligned_cols=29 Identities=14% Similarity=-0.032 Sum_probs=23.2
Q ss_pred eEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 117 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
..|.|.+...+|+|.|..+++-.......
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sD 150 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSD 150 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCc
Confidence 37899999999999999999876544333
No 452
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=23.42 E-value=1.3e+02 Score=19.37 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=18.6
Q ss_pred CCCccEEEEEEEEEcCCCcCCc
Q psy11549 220 LDGTVLMRVVISGVNAKGRSLP 241 (261)
Q Consensus 220 l~~~~~Y~~~~~a~N~~G~~~~ 241 (261)
...+|.|++++.+-|.-|.+..
T Consensus 76 v~kgG~y~m~V~lCn~dGCS~S 97 (106)
T cd02848 76 VGKGGRYQMQVALCNGDGCSTS 97 (106)
T ss_pred eCCCCeEEEEEEEECCCCccCc
Confidence 5778999999999999996644
No 453
>PHA03292 envelope glycoprotein I; Provisional
Probab=23.38 E-value=2e+02 Score=23.34 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=23.3
Q ss_pred eEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVT 145 (261)
Q Consensus 117 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 145 (261)
-.|.|.+...+|+|.|..+++-.......
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~aD 156 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPTAD 156 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCccCc
Confidence 47899999999999999999876544433
No 454
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=23.08 E-value=39 Score=16.70 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=8.1
Q ss_pred CCCCEeEEEE
Q psy11549 29 RQSAGTYKCS 38 (261)
Q Consensus 29 ~~D~G~Y~C~ 38 (261)
..|.|.|+|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 4788999994
No 455
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=22.50 E-value=2e+02 Score=17.78 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=20.4
Q ss_pred CCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549 220 LDGTVLMRVVISGVNAKGRSLPVIWDDFSMS 250 (261)
Q Consensus 220 l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~ 250 (261)
..+.|.|++.+.|....|.+ .+....+...
T Consensus 63 ~~~~g~~~i~v~a~D~~g~~-~~~~f~i~V~ 92 (97)
T smart00736 63 NSDVGSLSLKVTATDSSGAS-ASDTFTITVV 92 (97)
T ss_pred CCCCcEEEEEEEEEECCCCE-EEEEEEEEEe
Confidence 33468899999999999844 4444444433
No 456
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=21.83 E-value=4.1e+02 Score=21.03 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=29.0
Q ss_pred cEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549 212 AFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS 250 (261)
Q Consensus 212 ~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~ 250 (261)
.-+|.+ |+|+..|.|.+.+.-..|.+-+-..+.|.+.
T Consensus 261 tetI~~--L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 261 TETIKG--LKPGTTYLFDVYVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred eeeccc--CCCCcEEEEEEEEecCCCceeecceEEEEec
Confidence 347889 9999999999999888887766666665543
No 457
>PHA03112 IL-18 binding protein; Provisional
Probab=21.61 E-value=2.8e+02 Score=19.01 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=20.2
Q ss_pred eeCCCcEEEEEEEeeC-CCCceeEEEEcC
Q psy11549 71 ASRSESVDIHCAVEAD-PPARSFKWKFNN 98 (261)
Q Consensus 71 ~~~g~~~~l~C~~~~~-~~~~~~~W~~~~ 98 (261)
..+++.+.|.|.+-+. |.-.-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3478999999998755 433368898654
No 458
>PHA03189 UL14 tegument protein; Provisional
Probab=21.19 E-value=1.1e+02 Score=24.01 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.2
Q ss_pred cCCCCCCEeEEEEEEeCCCcc
Q psy11549 26 KVSRQSAGTYKCSAINTKGEA 46 (261)
Q Consensus 26 ~~~~~D~G~Y~C~~~~~~~~~ 46 (261)
++..+-+|.|.|+..|.....
T Consensus 139 ~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEecccceEEEEecccccee
Confidence 455688999999999885443
No 459
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=20.81 E-value=81 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=14.8
Q ss_pred CCCCCCEeEEEEEEeCCCcc
Q psy11549 27 VSRQSAGTYKCSAINTKGEA 46 (261)
Q Consensus 27 ~~~~D~G~Y~C~~~~~~~~~ 46 (261)
+-.+-+..+.|++.|..|..
T Consensus 5 ilkdssnsflctvqnkng~~ 24 (65)
T PF13220_consen 5 ILKDSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred eeecCCCceEEEEecccHhH
Confidence 44556677899999988765
No 460
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=20.07 E-value=1.2e+02 Score=18.18 Aligned_cols=15 Identities=0% Similarity=-0.139 Sum_probs=9.9
Q ss_pred CCCccEEEEEEEEEc
Q psy11549 220 LDGTVLMRVVISGVN 234 (261)
Q Consensus 220 l~~~~~Y~~~~~a~N 234 (261)
.-+.|.|.|++.|.+
T Consensus 65 ~~~~G~Y~~~v~a~~ 79 (81)
T PF13860_consen 65 PVPDGTYTFRVTATD 79 (81)
T ss_dssp B--SEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEe
Confidence 456678888888765
Done!