RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11549
(261 letters)
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 114 bits (288), Expect = 5e-30
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 20/247 (8%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
G L + + SL ++ V +G Y C A + G + + L ++YAP
Sbjct: 46 GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFI 104
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE---RFSSGSRG 116
++ G ++I C V+++PPA S W+ + L + + S R
Sbjct: 105 SNQTIYYSWEG----NPINISCDVKSNPPA-SIHWRRD--KLVLPAKNTTNLKTYSTGRK 157
Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
+L P ++ D+G +C A N IGT+ + LA P P + + ++ +S
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEY--ILALADVPSSPYGVKIIELSQTTAKVS 215
Query: 177 CT-PGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVN 234
P GG+P + +++ + + ++ L +L + T +RV VN
Sbjct: 216 FNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVA--AVN 273
Query: 235 AKGRSLP 241
KG+
Sbjct: 274 GKGQGDY 280
Score = 44.8 bits (106), Expect = 1e-05
Identities = 22/124 (17%), Positives = 31/124 (25%), Gaps = 18/124 (14%)
Query: 64 DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE------RFSSGSRGS 117
+ V + C E +P WK G T G + S
Sbjct: 9 NETTYEN----GQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVH 174
L V D G C A + IG + + P ++
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSM--YLDIEYAPKFISNQTIYYSWEGNP--IN 119
Query: 175 ISCT 178
ISC
Sbjct: 120 ISCD 123
Score = 43.6 bits (103), Expect = 3e-05
Identities = 42/266 (15%), Positives = 73/266 (27%), Gaps = 42/266 (15%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
+ L + + + L + S G Y C+A N G L +
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE-YILALADV 195
Query: 59 PICKSDRIVIVGASRSESVDIHCAVEADPPARS-----------FKWKFNNSGETLDVGS 107
P S V + + + + P K + + +
Sbjct: 196 P--SSPYGVKIIELSQTTAKVSF----NKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH- 248
Query: 108 ERFSSGSRGSMLRYTPVTEL----DYGTLSCAAQNAIGT-QVTPCLYQVVLAGKPQPPQN 162
G + L Y + AA N G + L + P +
Sbjct: 249 --------GVQTMVV-LNNLEPNTTY-EIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS 298
Query: 163 CSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSA-SDLNLLVNLTNLDTPAFTLEDLGL 220
+ + S +S T DGG P + ++ S + L + LE L
Sbjct: 299 IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHL-Q 357
Query: 221 DGTVLMRVVISGVNAKGRSLPVIWDD 246
V I+ N G S P +++
Sbjct: 358 WTMG-YEVQITAANRLGYSEPTVYEF 382
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 96.4 bits (240), Expect = 1e-23
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 17/231 (7%)
Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI----VGASRS 74
L++ V+ A Y+ A N G + L V+ + + V A R
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGS--ERFSSGSRGSMLRYTPVTELDYGTL 132
E V I P W+ + +D + + S S++ V D G
Sbjct: 120 EVVSIKIPFSGKPDP-VITWQKG--QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Query: 133 SCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLP-QTFT 190
A+N G ++ +A P PP+ V + + SV+++ P DGG +
Sbjct: 177 VVCAKNRFGI--DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYI 234
Query: 191 LELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+E A+ + + +T+ +L + RV+ N G S P
Sbjct: 235 VE-KCATTAERWLRVGQARETRYTVINLFGKTSYQFRVI--AENKFGLSKP 282
Score = 46.7 bits (111), Expect = 3e-06
Identities = 21/121 (17%), Positives = 29/121 (23%), Gaps = 10/121 (8%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-SMLRY 121
+ V + + C V P KW D R G L
Sbjct: 12 RNLNVRYQ----SNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLII 66
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISC 177
VT+ D A N G+ +V + K P+ V I
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI 126
Query: 178 T 178
Sbjct: 127 P 127
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 89.9 bits (223), Expect = 5e-22
Identities = 46/218 (21%), Positives = 75/218 (34%), Gaps = 26/218 (11%)
Query: 33 GTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSF 92
TY ++ + YAP + V V+I C V A P A +
Sbjct: 1 ATYAAASSALVP-------RGSHMYAPKLQGPVAVYTWEG--NQVNITCEVFAYPSA-TI 50
Query: 93 KWKFNNSGETLDVGSE---RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149
W + G+ L + + + S L TP +E D+G +C A N IG +
Sbjct: 51 SWFRD--GQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF-- 106
Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLP-QTFTLELYSASDLNLLVNLTN 207
+V A P P V +S+ + P GG+P + E + + +
Sbjct: 107 ILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 165
Query: 208 L----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
T+ L + T +R+ +N KG
Sbjct: 166 AKEASMEGIVTIVGLKPETTYAVRLA--ALNGKGLGEI 201
Score = 35.2 bits (81), Expect = 0.011
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
G L + + I + N L + S G Y C+A+N G+ + L
Sbjct: 55 DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE-FILVQADT 113
Query: 59 P 59
P
Sbjct: 114 P 114
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 90.4 bits (224), Expect = 1e-20
Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 9/179 (5%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
L N ++ N +L+++ V R S TY C A N +G + L+++V P
Sbjct: 563 DNRALPINRKQKV-FPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI 621
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
A + + +HC+V + W + + D+G G RGS+L
Sbjct: 622 IPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
V G +C A+N G Q + + P P + + S + C
Sbjct: 682 EAVEASHAGNFTCHARNLAGHQQFTT--PLNVYVPPRWILEPTDKAF--AQGSDAKVEC 736
Score = 78.8 bits (194), Expect = 9e-17
Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP----ICKSDRIVI 68
I S L ++ V ++ G Y+C N + A ++ +LKL ++ P + +
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME 442
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNN----SGETLDVGSERFSSGSRGSMLRYTPV 124
G SV + C +P W+ + + + VG +G S L T V
Sbjct: 443 PG----PSVFLKCVAGGNPTP-EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497
Query: 125 TELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNETTSSVHISC 177
D G C A++ +G ++ + G P + ++ ++ ++C
Sbjct: 498 HANDGGLYKCIAKSKVGVAEHSA--KLNVYGLPYIRQMEKKAIV--AGETLIVTC 548
Score = 78.1 bits (192), Expect = 1e-16
Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 13/159 (8%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK---SDR 65
T++R+ L ++ V AG + C A N G L V P +D+
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF-TTPLNVYVPPRWILEPTDK 724
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR--GSMLRYTP 123
G + C + P WK + + S R L
Sbjct: 725 AFAQG----SDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDN 779
Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
+ + + G C A N IG+ ++ + V A +
Sbjct: 780 IQKTNEGYYLCEAINGIGSGLSAVIMISVQA--HHHHHH 816
Score = 76.1 bits (187), Expect = 7e-16
Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 17/175 (9%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKS--DRIVIVGASRSESVD 78
L + V G YKC A + G A + KL V P + + ++ G E++
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHS-AKLNVYGLPYIRQMEKKAIVAG----ETLI 545
Query: 79 IHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL-DYGTLSCAAQ 137
+ C V P S W+ + L + + G+ L V D T +C A+
Sbjct: 546 VTCPVAGYPID-SIVWERD--NRALPINR-KQKVFPNGT-LIIENVERNSDQATYTCVAK 600
Query: 138 NAIGTQVTPCLY-QVVLAGKPQPPQNCSVRNETTSSVHISCTP-GYDGGLPQTFT 190
N G L QV++ + P + + + C+ G D LP
Sbjct: 601 NQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD--LPLNID 653
Score = 66.1 bits (161), Expect = 1e-12
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 26/175 (14%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVI 68
+ R+ + +L+++ + +G Y C N+ G + + L V I + V
Sbjct: 298 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV-ETVLTVTAPLSAKIDPPTQTVD 356
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
G C +P + W + G+ + S+LR V + D
Sbjct: 357 FG----RPAVFTCQYTGNPIK-TVSWMKD--GKAIG---------HSESVLRIESVKKED 400
Query: 129 YGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSVHISCTP 179
G C +N + ++ P Q Q ++ SV + C
Sbjct: 401 KGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME--PGPSVFLKCVA 453
Score = 64.2 bits (156), Expect = 7e-12
Identities = 27/176 (15%), Positives = 49/176 (27%), Gaps = 16/176 (9%)
Query: 22 LVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
+ + + + A+ G T + P+ + + S S +I
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDY------GTLSC 134
C +P W ++ G + S G L + P DY +C
Sbjct: 61 CKASGNPMP-EIIWIRSD-GTAVGDVPGLRQISSDGK-LVFPPFRAEDYRQEVHAQVYAC 117
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVHISCTPGYDGGLPQ 187
A+N G+ ++ + V V E +S I C
Sbjct: 118 LARNQFGSIISRDV-HVRAVVAQYYEA--DVNKEHVIRGNSAVIKCLIPSFVADFV 170
Score = 63.8 bits (155), Expect = 8e-12
Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 19/155 (12%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQS------AGTYKCSAINTKGEATSNQLKLRVK 56
G + R I S+ LV + A Y C A N G S + +R
Sbjct: 77 DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 136
Query: 57 YAPICK---SDRIVIVGASRSESVDIHCAVEADP--PARSFKWKFNNS--GETLDVGSER 109
A + + VI G S I C + + W + +
Sbjct: 137 VAQYYEADVNKEHVIRG----NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192
Query: 110 FSSGSRGSMLRYTPVTELD-YGTLSCAAQNAIGTQ 143
+ G L V D Y + C ++ + +
Sbjct: 193 YLVLPSGE-LHIREVGPEDGYKSYQCRTKHRLTGE 226
Score = 58.0 bits (140), Expect = 8e-10
Identities = 25/188 (13%), Positives = 50/188 (26%), Gaps = 19/188 (10%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQ-SAGTYKCSAINTKGEATSNQLKLRV-------- 55
P A ++L + L +++V + +Y+C + T
Sbjct: 184 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243
Query: 56 -KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
+ + + S S ++ + C + P F+W G T
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEGTTRKQAVVLNDRVK 302
Query: 115 -RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETT 170
L D G C N++G + + + P +V
Sbjct: 303 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET--VLTVTAPLSAKIDPPTQTVDFG-- 358
Query: 171 SSVHISCT 178
+C
Sbjct: 359 RPAVFTCQ 366
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 86.2 bits (213), Expect = 2e-19
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 21/143 (14%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---- 59
G L + ++ N++L L V+R A Y C N+ S+ + L V Y P
Sbjct: 504 GQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
I D + G ++++ C ++P + W+ N +L
Sbjct: 564 ISPPDSSYLSG----ANLNLSCHSASNPSP-QYSWRING------------IPQQHTQVL 606
Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
+T + GT +C N
Sbjct: 607 FIAKITPNNNGTYACFVSNLATG 629
Score = 83.9 bits (207), Expect = 1e-18
Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 24/184 (13%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---- 59
L + ++ N++L L V+R G Y+C N S+ + L V Y P
Sbjct: 326 NQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT 385
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
I S G ++ + C ++PPA + W + G E L
Sbjct: 386 ISPSYTYYRPG----VNLSLSCHAASNPPA-QYSWLID--GNIQQHTQE----------L 428
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVHIS 176
+ +TE + G +C A N+ + + ++ + P S ++ +V +
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488
Query: 177 CTPG 180
C P
Sbjct: 489 CEPE 492
Score = 77.7 bits (191), Expect = 2e-16
Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI-----CKSDRIV 67
I Q L + ++ +++G Y C A N+ + + V + + V
Sbjct: 420 NIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPV 479
Query: 68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
++V C EA ++ W N + S R + L VT
Sbjct: 480 EDK----DAVAFTCEPEAQNT--TYLWWVNGQSLPV---SPRLQLSNGNRTLTLFNVTRN 530
Query: 128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCT 178
D C QN++ + + VL G P + S + +++++SC
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL--SGANLNLSCH 582
Score = 76.5 bits (188), Expect = 4e-16
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 28/186 (15%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---- 59
L + ++ N++L L V+R +YKC N S+ + L V Y P
Sbjct: 148 NQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT 207
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
I + G E++++ C ++PPA + W N G+ + S+ L
Sbjct: 208 ISPLNTSYRSG----ENLNLSCHAASNPPA-QYSWFVN--------GTFQQSTQE----L 250
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP-----QPPQNCSVRNETTSSVH 174
+T + G+ +C A N+ + + + +P + V +E V
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDA--VA 308
Query: 175 ISCTPG 180
++C P
Sbjct: 309 LTCEPE 314
Score = 74.2 bits (182), Expect = 2e-15
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 15/182 (8%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA---PI 60
P + II N SL++Q + + G Y I + + RV P
Sbjct: 55 ATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPS 114
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
S+ V ++V C E ++ W N ++L V S + L
Sbjct: 115 ISSNNSKPV--EDKDAVAFTCEPETQDA--TYLWWVN--NQSLPVSPRLQLSNGNRT-LT 167
Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP---PQNCSVRNETTSSVHISC 177
VT D + C QN + + + + VL G P P N S R+ ++++SC
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG--ENLNLSC 225
Query: 178 TP 179
Sbjct: 226 HA 227
Score = 35.7 bits (82), Expect = 0.012
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRV 55
Q L + K++ + GTY C N S + V
Sbjct: 598 IPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 83.0 bits (205), Expect = 2e-18
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 16/181 (8%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD 64
+ S ++L + +L + ++ +G Y+CSA N T N+ ++R+ P
Sbjct: 162 LNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ 221
Query: 65 RIVIVG-----ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
+ A + + C V PP SF W E + + S+++S + L
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPP-SFTWLRG--EEVIQLRSKKYSLLGGSN-L 277
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHIS 176
+ VT+ D GT +C ++ + P P N +
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISAS--AELTVLVPPWFLNHPSNLYAYESMD--IEFE 333
Query: 177 C 177
C
Sbjct: 334 C 334
Score = 77.2 bits (190), Expect = 2e-16
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 13/143 (9%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-IC 61
G + + +L +L++ V+ +GTY C ++ +L V P
Sbjct: 258 GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISA-SAELTVLVPPWFL 316
Query: 62 K--SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
S+ ++ CAV P + W N G+ + + S+ F + L
Sbjct: 317 NHPSNLYAYES----MDIEFECAVSGKPVP-TVNWMKN--GDVV-IPSDYFQIVGGSN-L 367
Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
R V + D G C A+N G
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGN 390
Score = 71.4 bits (175), Expect = 2e-14
Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 26/192 (13%)
Query: 4 GIPLAHNTSARI-ILSNQSLVLQKV-----SRQSAGTYKCSA-INTKGEATSNQLKLRVK 56
G+ LA R L N SL++Q + + G Y+C A + G S K+ V
Sbjct: 60 GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119
Query: 57 YAPICKS---DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG 113
S +G ++V + C V DP + W+ N G R
Sbjct: 120 GPLRFLSQTESITAFMG----DTVLLKCEVIGDPMP-TIHWQKNQQDLNPIPGDSRVVVL 174
Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK--------PQPPQNCSV 165
G+ L+ + + D G C+A+N T+ +L+ Q P N
Sbjct: 175 PSGA-LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIA 233
Query: 166 RNETTSSVHISC 177
+ C
Sbjct: 234 IEG--KDAVLEC 243
Score = 47.5 bits (113), Expect = 2e-06
Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 20/150 (13%)
Query: 41 NTKGEATSNQLKLRVKYAPICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN 97
+ + + + + SD + + G +V ++C+ E+D KWK +
Sbjct: 5 SELESS-HHHHHHGGRRSLHFVSEPSDAVTMRG----GNVLLNCSAESDRGVPVIKWKKD 59
Query: 98 NSGETLDVG-SERFSSGSRGSM----LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
G L +G +R GS+ + ++ + D G C A + +V+
Sbjct: 60 --GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM 117
Query: 153 LAGKP---QPPQNCSVRNETTSSVHISCTP 179
+AG ++ + +V + C
Sbjct: 118 VAGPLRFLSQTESITAFMG--DTVLLKCEV 145
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 11 TSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
S I+ +L + V + G Y+C A N G A S+ +L V
Sbjct: 355 PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSS-AQLIVP 400
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 79.5 bits (196), Expect = 3e-18
Identities = 35/147 (23%), Positives = 46/147 (31%), Gaps = 14/147 (9%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--IC 61
G + N + SN L ++ + G Y C A N GE Q L+V P I
Sbjct: 42 GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQPHIIQ 100
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE------RFSSGSR 115
+ V + C E +P WK G T G +
Sbjct: 101 LKNETTYEN----GQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 155
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
S L V D G C A + IG
Sbjct: 156 SSSLHIKDVKLSDSGRYDCEAASRIGG 182
Score = 35.6 bits (82), Expect = 0.008
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
+ SL ++ V +G Y C A + G + + L ++
Sbjct: 155 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIE 192
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 81.8 bits (202), Expect = 4e-18
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 2/140 (1%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
G L +R L LV+ + AG+Y+C A N +G S + LR +
Sbjct: 45 GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS 104
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
++ V + V C+ PA S++W N + RF S + G+ L
Sbjct: 105 AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN-LYIA 163
Query: 123 PVTELDYGTLSCAAQNAIGT 142
D G SC A + I
Sbjct: 164 KTEASDLGNYSCFATSHIDF 183
Score = 65.7 bits (160), Expect = 1e-12
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 22/153 (14%)
Query: 1 MAGGIPLAH--------NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLK 52
A G P+ + +++ + S L +Q V + GTY+C A N KG T Q +
Sbjct: 230 FAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY-QGR 288
Query: 53 LRVKYAP---ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER 109
+ + P +D +G + C P + +W + G+ L R
Sbjct: 289 IIIHAQPDWLDVITDTEADIG----SDLRWSCVASGKPRP-AVRWLRD--GQPLA-SQNR 340
Query: 110 FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
G LR++ + D G C A+N GT
Sbjct: 341 IE--VSGGELRFSKLVLEDSGMYQCVAENKHGT 371
Score = 65.3 bits (159), Expect = 2e-12
Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 25/186 (13%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT----SNQLKLRVKYAPI 60
+ + + + +L + K G Y C A + T S +L +
Sbjct: 143 NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202
Query: 61 CKSDRIVIVG------ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
+ + A + V + C +P KW+ + GS+ S
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP-QIKWRKLD-------GSQTSKWLS 254
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
+L V D GT C A+N G ++++ +P + + S
Sbjct: 255 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ--GRIIIHAQPDWLDVITDTEA--DIGS 310
Query: 172 SVHISC 177
+ SC
Sbjct: 311 DLRWSC 316
Score = 51.8 bits (124), Expect = 7e-08
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+ + G++ E V + C A+PPA +++WK N G L +G + G ++
Sbjct: 12 AHTLFPEGSAE-EKVTLTCRARANPPA-TYRWKMN--GTELKMGPDSRYRLVAGDLVISN 67
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSVHISCT 178
PV D G+ C A NA GT V+ + + + V +C+
Sbjct: 68 PVKAKDAGSYQCVATNARGTVVSREA-SLRFGFLQEFSAEERDPVKITEG--WGVMFTCS 124
Query: 179 P 179
P
Sbjct: 125 P 125
Score = 42.2 bits (99), Expect = 8e-05
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G PL + RI +S L K+ + +G Y+C A N G ++ +L V+
Sbjct: 332 GQPL--ASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYAS-AELTVQ 381
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 77.9 bits (192), Expect = 7e-18
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 7/142 (4%)
Query: 4 GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAIN-TKGEATSNQLKLRVKYAP-I 60
+ + R +L+N +L + +++ G Y+C +GE + + V P I
Sbjct: 40 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 99
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
+ A R E + C P + W N G+ ++ +E++ + L
Sbjct: 100 SMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRN--GKLIE-ENEKYILKGSNTELT 155
Query: 121 YTPVTELDYGTLSCAAQNAIGT 142
+ D G C A N G
Sbjct: 156 VRNIINSDGGPYVCRATNKAGE 177
Score = 50.5 bits (121), Expect = 6e-08
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 14/122 (11%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
S + G E ++ C V + P + W ++ E + S+ + + L+
Sbjct: 10 SPQEFKQG----EDAEVVCRVSSSPAP-AVSWLYH--NEEVTTISDNRFAMLANNNLQIL 62
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP-----QPPQNCSVRNETTSSVHISC 177
+ + D G C + ++ V++ P Q N + + SC
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG--EEMTFSC 120
Query: 178 TP 179
Sbjct: 121 RA 122
Score = 42.8 bits (101), Expect = 3e-05
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
G + N + SN L ++ + G Y C A N GE Q L+V
Sbjct: 135 NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQV 186
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 81.0 bits (200), Expect = 8e-18
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 4/141 (2%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
G + R + + SL++ ++ AGTY+C A N+ G S + KL+ Y K
Sbjct: 46 GTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFK 105
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+ V R + + + C S+ W FN + RF S G+ L
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN--EYPSYQDNRRFVSQETGN-LYIA 162
Query: 123 PVTELDYGTLSCAAQNAIGTQ 143
V + D G +C N +
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNH 183
Score = 69.5 bits (170), Expect = 7e-14
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 21/186 (11%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKLRVKYAPIC 61
P + + +L + KV + G Y C NT L ++ +
Sbjct: 141 EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVM 200
Query: 62 KSDRIVI-------VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
I V A + +V + C +P + W+ + G+ + + R S
Sbjct: 201 GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP-TILWRRAD-GKPIARKARRHKSNG 258
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
L + D G+ C A+N+ G V Q+ +P Q + V E +
Sbjct: 259 I---LEIPNFQQEDAGSYECVAENSRGKNVAK--GQLTFYAQPNWVQIINDIHVAMEES- 312
Query: 172 SVHISC 177
V C
Sbjct: 313 -VFWEC 317
Score = 66.8 bits (163), Expect = 5e-13
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 16/143 (11%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
G P+A AR SN L + ++ AG+Y+C A N++G+ + + +L P
Sbjct: 243 DGKPIA--RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA-KGQLTFYAQPNWV 299
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
+D V + ESV C P +++W N G+ L +R L
Sbjct: 300 QIINDIHVAME----ESVFWECKANGRPKP-TYRWLKN--GDPLL-TRDRIQ--IEQGTL 349
Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
T V D G C A+N G
Sbjct: 350 NITIVNLSDAGMYQCVAENKHGV 372
Score = 50.6 bits (121), Expect = 1e-07
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
S + + S + V + C V+ +P +WK N G +D+G + S GS+L
Sbjct: 13 SHVMFPLD-SEEKKVKLSCEVKGNPKP-HIRWKLN--GTDVDIGMDFRYSVVDGSLLINN 68
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSVHISCT 178
P D GT C A N+ GT V+ ++ A + SVR + + C
Sbjct: 69 PNKTQDAGTYQCIATNSFGTIVS-REAKLQFAYLENFKTRTRSTVSVR--RGQGMVLLCG 125
Query: 179 P 179
P
Sbjct: 126 P 126
Score = 40.2 bits (94), Expect = 4e-04
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
G PL T RI + +L + V+ AG Y+C A N G S+
Sbjct: 333 GDPL--LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSS 376
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 78.7 bits (194), Expect = 2e-17
Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 15/185 (8%)
Query: 3 GGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
G + + L + + + AG Y+C A + KG+ + L +
Sbjct: 41 QGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLT 100
Query: 61 CK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGS 117
+ S + G E ++ C V + P + W ++N E + RF+ + +
Sbjct: 101 FREVVSPQEFKQG----EDAEVVCRVSSSPAP-AVSWLYHN-EEVTTISDNRFAMLANNN 154
Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVH 174
L+ + + D G C + ++ V++ P N T +
Sbjct: 155 -LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 175 ISCTP 179
SC
Sbjct: 214 FSCRA 218
Score = 77.5 bits (191), Expect = 6e-17
Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Query: 4 GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRVKYAP-I 60
+ + R +L+N +L + +++ G Y+C +GE + + V P I
Sbjct: 136 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 195
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
+ A R E + C P + W N G+ ++ +E++ + L
Sbjct: 196 SMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRN--GKLIE-ENEKYILKGSNTELT 251
Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
+ D G C A N G QV + +
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF--VQHHHHHH 291
Score = 43.7 bits (103), Expect = 3e-05
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G + N + SN L ++ + G Y C A N GE Q L+V
Sbjct: 231 NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQH 286
Score = 42.5 bits (100), Expect = 6e-05
Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 16/121 (13%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--SMLR 120
S + VG ES C +P S W GE + + ++R G S L
Sbjct: 12 SKVELSVG----ESKFFTCTAIGEPE--SIDWYNPQ-GEKI-ISTQRVVVQKEGVRSRLT 63
Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
D G C A +A G + + K + + + C
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQG--EDAEVVC 120
Query: 178 T 178
Sbjct: 121 R 121
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 76.8 bits (189), Expect = 2e-17
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 16/158 (10%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
G L+ N ++ N +L + + AG YKC G + + +++
Sbjct: 41 NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK 100
Query: 59 PICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSGS 114
+ K + + G E I C V + P + WK G + + RF S
Sbjct: 101 LMFKNAPTPQEFKEG----EDAVIVCDVVSSLPP-TIIWKHK--GRDVILKKDVRFIVLS 153
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
L+ + + D GT C + ++ QV+
Sbjct: 154 NNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 57.1 bits (138), Expect = 3e-10
Identities = 31/133 (23%), Positives = 38/133 (28%), Gaps = 17/133 (12%)
Query: 53 LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS- 111
L+V P S + VG ES C V D + W N GE L +R S
Sbjct: 3 LQVDIVP---SQGEISVG----ESKFFLCQVAGDAKDKDISWFSPN-GEKLSPNQQRISV 54
Query: 112 --SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVR 166
+ S L D G C GTQ V + K P +
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFK 113
Query: 167 NETTSSVHISCTP 179
I C
Sbjct: 114 EGED--AVIVCDV 124
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 77.0 bits (189), Expect = 3e-17
Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 9/151 (5%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
II SN SL+ Q ++ + G Y + T ++ V ++
Sbjct: 66 IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKEL 125
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+SV + C + +W FN ++L + +ER + S+LR P+ D G C
Sbjct: 126 DSVTLTCLSNDIGA--NIQWLFN--SQSLQL-TERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSV 165
N + + + + ++ P +
Sbjct: 181 EISNPVSVRRSNSIKLDIIF----DPHHHHH 207
Score = 49.7 bits (118), Expect = 2e-07
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
L + +N L + + R+ AG Y+C N SN +KL + + P
Sbjct: 146 NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 78.0 bits (192), Expect = 4e-17
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 9/145 (6%)
Query: 4 GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP-I 60
G + R +LSN L ++ + + GTY+C + +++ V P +
Sbjct: 138 GRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV 197
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS---ERFSSGSRGS 117
IV A+ +SV + C + P + W + GE ++ E+ S
Sbjct: 198 QARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKD--GEPIENEEEDDEKHIFSDDSS 254
Query: 118 MLRYTPVTELDYGTLSCAAQNAIGT 142
L V + D C A+N G
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGE 279
Score = 78.0 bits (192), Expect = 4e-17
Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 13/167 (7%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK---SDRIVIVGASRS 74
+ +L + + AG YKC G + + +++ + K + + G
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEG---- 115
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
E I C V + P + WK + + RF S L+ + + D GT C
Sbjct: 116 EDAVIVCDVVSSLPP-TIIWKHKG-RDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVHISCT 178
+ ++ QV++ P S+ N T SV + C
Sbjct: 173 EGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCD 219
Score = 50.6 bits (121), Expect = 1e-07
Identities = 30/132 (22%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 53 LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS- 111
L+V P S + VG ES C V D + W F+ +GE L +R S
Sbjct: 3 LQVDIVP---SQGEISVG----ESKFFLCQVAGDAKDKDISW-FSPNGEKLSPNQQRISV 54
Query: 112 --SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVR 166
+ S L D G C GTQ + + K P +
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFK 113
Query: 167 NETTSSVHISCT 178
I C
Sbjct: 114 EG--EDAVIVCD 123
Score = 36.8 bits (85), Expect = 0.004
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 4 GIPLAHNTSARI----ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G P+ + + L ++ V + Y C A N GE + + L+V
Sbjct: 234 GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA-SIHLKVF 289
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 76.3 bits (188), Expect = 4e-17
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 4 GIPLAHNTSARIILSN-QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
I + + I N Q L + V G Y C+A N G A + L+VK P
Sbjct: 45 KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT 104
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
+ +I G + C +P S W L + R + GS L
Sbjct: 105 RPPINVKIIEG----LKAVLPCTTMGNPKP-SVSWIKG--DSALRE-NSRIAVLESGS-L 155
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
R V + D G C A+N++GT + + V
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 60.5 bits (147), Expect = 2e-11
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 13/120 (10%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+V E CAVE+ P W N + + R+S G +L
Sbjct: 15 ETVDALVE----EVATFMCAVESYPQP-EISWTRN--KILIKLFDTRYSIRENGQLLTIL 67
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCTP 179
V + D G C A N +G V C + + KP +PP N + + CT
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESC-GALQVKMKPKITRPPINVKII--EGLKAVLPCTT 124
Score = 45.5 bits (108), Expect = 3e-06
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 3 GGIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G L ++RI +L + SL + V ++ AG Y+C A N+ G A S +KL V+
Sbjct: 137 GDSALR--ENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 77.9 bits (192), Expect = 4e-17
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 20/181 (11%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI---- 60
I N ++ + +L + KV++ AG Y C A N G+ + + +L V+ P
Sbjct: 46 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKK 104
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSML 119
+ RIV E C + P W + + S+ R S ++L
Sbjct: 105 LEPSRIVKQD----EHTRYECKIGGSPEI-KVLWYKD--ETEIQESSKFRMSFVESVAVL 157
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHIS 176
++ D G +C A NA G+ + + + P + P + VH+
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSST--SLKVKEPPVFRKKPHPVETL--KGADVHLE 213
Query: 177 C 177
C
Sbjct: 214 C 214
Score = 73.2 bits (180), Expect = 2e-15
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 12/142 (8%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICK- 62
I + + S L + +S + +G Y C A N G A+S+ L+VK P K
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKK 198
Query: 63 -SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLR 120
+ G V + C ++ PP W + L G + + S + + +
Sbjct: 199 PHPVETLKG----ADVHLECELQGTPPF-QVSWHKD--KRELRSGKKYKIMSENFLTSIH 251
Query: 121 YTPVTELDYGTLSCAAQNAIGT 142
V D G C A N +G+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGS 273
Score = 39.3 bits (92), Expect = 7e-04
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 14/119 (11%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFSSGSRGSMLRY 121
+ +G ES C V P W + + G + + + L
Sbjct: 13 VSVDLALG----ESGTFKCHVTGTAPI-KITWAKD--NREIRPGGNYKMTLVENTATLTV 65
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
VT+ D G +C A N G Q+ + P + + + + C
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSA--QLGVQEPPRFIKKLEPSRIVKQ-DEHTRYEC 121
Score = 38.2 bits (89), Expect = 0.001
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
L +I+ N S+ + V G Y+C A N G T + +K
Sbjct: 229 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV-GSITLK 283
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 79.0 bits (194), Expect = 6e-17
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 16/150 (10%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSN---QLKLRVKYAPICK---SDRIVIVGA 71
+ L+ S Q G Y C A + K + QL + + AP ++ +G
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIG- 681
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
ES+++ C +PP W + ETL L V + D G
Sbjct: 682 ---ESIEVSCTASGNPPP-QIMWFKD--NETLV-EDSGIVLKDGNRNLTIRRVRKEDEGL 734
Query: 132 LSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
+C A + +G ++ G +
Sbjct: 735 YTCQACSVLGCAK--VEAFFIIEGAQEKTN 762
Score = 71.3 bits (174), Expect = 3e-14
Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 25/193 (12%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI------CK 62
+ + + +L + V+R G Y C+A + + +RV P +
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGSGME 337
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
S VG E V I PP KW N G L+ + L
Sbjct: 338 SLVEATVG----ERVRIPAKYLGYPPP-EIKWYKN--GIPLESNHTIKAGHV----LTIM 386
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
V+E D G + N I + + +V+ PQ + + + ++ ++CT
Sbjct: 387 EVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCT 446
Query: 179 -PGYDGGLPQTFT 190
P
Sbjct: 447 VYAIP--PPHHIH 457
Score = 68.6 bits (167), Expect = 2e-13
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 13/166 (7%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASRSES 76
+L + KV G YKC T + + ++ +P + +V + +++++
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVI-YVYVQDYRSPFIASVSDQHGVVYITENKNKT 145
Query: 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA 136
V I C S ++ + G+ +G G + C A
Sbjct: 146 VVIPCLGSISNLNVSLCARYPE-KRFVPDGNRISWDSKKG--FTIPSYMISYAGMVFCEA 202
Query: 137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
+ + + Y VV+ G S + + ++CT
Sbjct: 203 KINDESYQSIM-YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247
Score = 65.5 bits (159), Expect = 3e-12
Identities = 35/210 (16%), Positives = 56/210 (26%), Gaps = 40/210 (19%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ-LKLRVKYAP--I 60
GIPL S I + L + +VS + G Y N + + + L V P
Sbjct: 368 GIPL---ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIG 424
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE------------ 108
KS + + + C V A PP W + E + S+
Sbjct: 425 EKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEE 484
Query: 109 --------------------RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148
G ++ C A N +G
Sbjct: 485 WRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544
Query: 149 YQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
+ V + + + SV + CT
Sbjct: 545 FHVTRGPEITLQPDMQPTEQ--ESVSLWCT 572
Score = 64.0 bits (155), Expect = 8e-12
Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 20/191 (10%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPIC 61
+ + S + + AG C A S + + V Y
Sbjct: 166 PEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225
Query: 62 -----KSDRIVIVGASRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSR 115
+ VG E + ++C + F W++ +S R
Sbjct: 226 VVLSPSHGIELSVG----EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281
Query: 116 G-------SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNE 168
G S L VT D G +CAA + + T+ +V E
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341
Query: 169 TT--SSVHISC 177
T V I
Sbjct: 342 ATVGERVRIPA 352
Score = 64.0 bits (155), Expect = 9e-12
Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 34/184 (18%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSESVD 78
L + + YKC A+N G + V P + D ESV
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERV-ISFHVTRGPEITLQPDMQPTEQ----ESVS 568
Query: 79 IHCAVEADPPARSFKWKFNNS-------------------GETLDVGSERFSSGSRGSML 119
+ C + + W + +S + ++
Sbjct: 569 LWCTADRSTFE-NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIM 627
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP-----PQNCSVRNETTSSVH 174
+ D G C AQ+ + + Q+ + + P +N + S+
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTS--IGESIE 685
Query: 175 ISCT 178
+SCT
Sbjct: 686 VSCT 689
Score = 55.5 bits (133), Expect = 5e-09
Identities = 22/154 (14%), Positives = 35/154 (22%), Gaps = 16/154 (10%)
Query: 32 AGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARS 91
+ C + L + I K + ++ I C
Sbjct: 9 VALWLCVETRAASVGLP-SVSLDLPRLSIQKDILTIKAN----TTLQITC--RGQRD--- 58
Query: 92 FKWKFNNSGETLDVGSER--FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149
W + N+ + E S G L V D G C + V
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 150 QVV----LAGKPQPPQNCSVRNETTSSVHISCTP 179
Q +A + +V I C
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLG 152
Score = 48.2 bits (114), Expect = 1e-06
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
L ++ + N++L +++V ++ G Y C A + G A ++ A
Sbjct: 704 NETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQ 758
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 76.2 bits (187), Expect = 7e-17
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 17/148 (11%)
Query: 7 LAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI---CK 62
+ + R+ S+ + V+R+ G Y C G+ + L V P
Sbjct: 52 ITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS 111
Query: 63 SDRIVIVGASRSESVDIHC-AVEADPPARSFKWKFN-------NSGETLDVGSERFSSGS 114
V +G + C + PP+ + W + ++ +T + F+
Sbjct: 112 VPSSVTIG----NRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDP 166
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGT 142
+ L + PVT D G C AQN GT
Sbjct: 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGT 194
Score = 40.0 bits (93), Expect = 3e-04
Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 17/126 (13%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR------- 115
SD V ES+ + C R +WKF T V +
Sbjct: 9 SDVQVPEN----ESIKLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFS 63
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSS 172
S + ++ VT D G +C G + + P SV
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR-- 121
Query: 173 VHISCT 178
++C+
Sbjct: 122 AVLTCS 127
Score = 39.2 bits (91), Expect = 5e-04
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVK 56
N+S I + L+ V+ +G Y C A N G A + +
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 77.4 bits (190), Expect = 1e-16
Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 22/201 (10%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
+ R+ + +L L ++ +GTY C+ N + ++LRV
Sbjct: 64 SARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS-IELRVFENTDAF 122
Query: 63 S-----DRIVIVGASRS-ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG 116
+I+ + S D+ +W + LD +E+F S
Sbjct: 123 LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV-KIQWYKD--SLLLDKDNEKFLSVRGT 179
Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQ---VTPCLYQVVLAGKP-------QPPQNCSVR 166
+ L V D G C A Q +T + + K P + S
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISA- 238
Query: 167 NETTSSVHISCTPGYDGGLPQ 187
S + I C G P
Sbjct: 239 -SLGSRLTIPCKVFLGTGTPL 258
Score = 30.8 bits (69), Expect = 0.41
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 19 NQSLVLQKVSRQSAGT-YKCSAINTKGEATSNQLKLRVK 56
L+ V+R+ +KC NT T + VK
Sbjct: 297 EVPLIFDPVTREDLHMDFKCVVHNTLSFQTL---RTTVK 332
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 77.0 bits (189), Expect = 3e-16
Identities = 28/171 (16%), Positives = 44/171 (25%), Gaps = 25/171 (14%)
Query: 6 PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR 65
+ + I L L ++ GTY N+ A + V P
Sbjct: 361 DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIA-FNVYVNTKP------ 413
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSSGS 114
I+ R + + C P + W F E + S G
Sbjct: 414 -EILTYDRLVNGMLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGK 471
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP---PQN 162
GT+ C A N +G T + G + P +
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGK--TSAYFNFAFKGNNKEQIHPHH 520
Score = 73.2 bits (179), Expect = 5e-15
Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 22/173 (12%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP------ICKSDRIVIV 69
+L + +G + C A NT G A L V + + V
Sbjct: 269 YERQATLTISSARVNDSGVFMCYANNTFGSANVT-TTLEVVDKGFINIFPMINTTVFVND 327
Query: 70 GASRSESVDIHCAVEADPPARSFKWKFNN----SGETLDVGSERFSSGSRGSMLRYTPVT 125
G E+VD+ EA P +W + N SE S+ S L T +
Sbjct: 328 G----ENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 126 ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
+ GT + N+ V P+ + + + + C
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYVN-----TKPEILTY--DRLVNGMLQCV 429
Score = 67.0 bits (163), Expect = 6e-13
Identities = 37/188 (19%), Positives = 61/188 (32%), Gaps = 19/188 (10%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
G PL + I ++++ V R CS S + L+V+ A
Sbjct: 153 GKPLPKDLRF-IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Query: 60 ----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS- 114
+ K+ ++ G E + C ++ + WK NS L + G
Sbjct: 212 PVVSVSKASYLLREG----EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267
Query: 115 ---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNET 169
R + L + D G C A N G+ +VV G P N +V
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327
Query: 170 TSSVHISC 177
+V +
Sbjct: 328 GENVDLIV 335
Score = 65.5 bits (159), Expect = 2e-12
Identities = 17/168 (10%), Positives = 41/168 (24%), Gaps = 18/168 (10%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVIVGASRS 74
+ +K + G Y C+ + + + V+ +
Sbjct: 78 KQNEWITEKAEATNTGKYTCTNKHGLSNSIY----VFVRDPAKLFLVDRSLYGKED---- 129
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+ C + DP ++ K RF + ++ + L C
Sbjct: 130 NDTLVRCPL-TDPEVTNYSLKGCQGKPLPK--DLRFIPDPKAGIMIKSVKRAYHRLCLHC 186
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
+ + ++ V P + ++CT
Sbjct: 187 SVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 76.8 bits (189), Expect = 3e-16
Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 22/187 (11%)
Query: 3 GGIPLAHNTSARIIL--SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
+ + ++ L + +L + KV++ AG Y C A N G+ + +L V+ P
Sbjct: 234 DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC-SAQLGVQEPPR 292
Query: 61 C----KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSR 115
+ RIV E C + P W + + S+ R S
Sbjct: 293 FIKKLEPSRIVKQD----EHTRYECKIGGSPEI-KVLWYKD--ETEIQESSKFRMSFVES 345
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSS 172
++L ++ D G +C A NA G+ + + + P + P +
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSST--SLKVKEPPVFRKKPHPVET--LKGAD 401
Query: 173 VHISCTP 179
VH+ C
Sbjct: 402 VHLECEL 408
Score = 76.0 bits (187), Expect = 7e-16
Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 19/181 (10%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK-- 62
I + + S L + +S + +G Y C A N G A+S+ L+VK P+ +
Sbjct: 332 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKK 390
Query: 63 -SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLR 120
+ G V + C ++ PP W + L G + + S + + +
Sbjct: 391 PHPVETLKG----ADVHLECELQGTPPF-QVSWHKD--KRELRSGKKYKIMSENFLTSIH 443
Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
V D G C A N +G+ + L P + + S V +
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVG--SITLKAPPRFVKKLSDISTVVGEE--VQLQA 499
Query: 178 T 178
T
Sbjct: 500 T 500
Score = 74.8 bits (184), Expect = 1e-15
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 9/162 (5%)
Query: 4 GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI 60
L + ++ N SLV+ KV G Y C A N+ G S+ L ++ + P
Sbjct: 43 HTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPP 102
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSML 119
+ ++ V + V C + P W + GE L + + S + L
Sbjct: 103 SFARKLKDVHETLGFPVAFECRINGSEPL-QVSWYKD--GELLKDDANLQTSFIHNVATL 159
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
+ + G +C+A N +GT + ++ L+ PP
Sbjct: 160 QILQTDQSHVGQYNCSASNPLGTASSSA--KLTLSEHEVPPF 199
Score = 74.5 bits (183), Expect = 2e-15
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 19/152 (12%)
Query: 3 GGIPLAHNTSARIILS----NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
L + + + S+ + V G Y+C A N G T + +K
Sbjct: 421 DKREL--RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTC-VGSITLKAP 477
Query: 59 PICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSG 113
P SD +VG E V + +E P S W + + S+ S
Sbjct: 478 PRFVKKLSDISTVVG----EEVQLQATIEGAEPI-SVAWFKD--KGEIVRESDNIWISYS 530
Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
+ L+++ + G +C +N GTQ
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562
Score = 72.9 bits (179), Expect = 6e-15
Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 11/181 (6%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP 59
G L + + + + +L + + + G Y CSA N G A+S+ +L L P
Sbjct: 138 DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
+ V V + ES C V P W +N E G+ + + + L
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDN-REIRPGGNYKMTLVENTATL 255
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHIS 176
VT+ D G +C A N G Q+ + P+ + + +
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSA--QLGVQEPPRFIKKLEPSRIVKQ-DEHTRYE 312
Query: 177 C 177
C
Sbjct: 313 C 313
Score = 36.7 bits (85), Expect = 0.007
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 4 GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
+ + I ++ +L + +AG Y C N G L V
Sbjct: 515 KGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF-ATLSVL 569
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 74.1 bits (182), Expect = 3e-16
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 26/176 (14%)
Query: 4 GIPLAHNTSARIILSN----QSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYA 58
G ++ S +L L ++ V Y+C A N G+A S L +
Sbjct: 44 GKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG 103
Query: 59 PICK----------SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE 108
R++ VG +V + C +P + W N +D+ +
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVG----HTVLMTCKAIGNPTP-NIYWIKN--QTKVDMSNP 156
Query: 109 RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK--PQPPQN 162
R+S G L+ E D G C A+N++GT+ + V + + +
Sbjct: 157 RYSLKD-GF-LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHHH 210
Score = 50.6 bits (121), Expect = 8e-08
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
+ + R L + L ++ + G Y+C A N+ G S L VK +
Sbjct: 147 NQTKVDMSNP-RYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 203
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 75.6 bits (185), Expect = 4e-16
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 7/123 (5%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
L + C + L L V+Y P + + V +
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKES-LTLNVQYEPEVTIEGFDGNWYLQRMDVKLT 253
Query: 81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI 140
C +A+PPA + W N V ++ P+ GT C A N I
Sbjct: 254 CKADANPPATEYHWTTLNGSLPKGV------EAQNRTLFFKGPINYSLAGTYICEATNPI 307
Query: 141 GTQ 143
GT+
Sbjct: 308 GTR 310
Score = 64.4 bits (156), Expect = 3e-12
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 5/135 (3%)
Query: 17 LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGAS 72
++ ++ L ++ + G Y C +QL L V P +
Sbjct: 89 FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQ 148
Query: 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG-SRGSMLRYTPVTELDYGT 131
+ + C P W+ GE + + S R P E +
Sbjct: 149 DDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS 208
Query: 132 LSCAAQNAIGTQVTP 146
L+C +
Sbjct: 209 LACIVNYHMDRFKES 223
Score = 47.1 bits (111), Expect = 2e-06
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD 64
+ ++ AGTY C A N G S Q+++ + A +
Sbjct: 279 EAQNRTLFFKGPINYSLAGTYICEATNPIGT-RSGQVEVNITEAAALEHH 327
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 73.2 bits (180), Expect = 5e-16
Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 16/156 (10%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
G + + I + L++ V+ A Y+ A N G + L V+
Sbjct: 41 QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVP 99
Query: 59 PICKSDRIVI----VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---S 111
+ + V A R E V I P W+ + +D + +
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKG--QDLIDN-NGHYQVIV 155
Query: 112 SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147
+ S S++ V D G A+N G
Sbjct: 156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Score = 42.0 bits (99), Expect = 5e-05
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 10/102 (9%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---SSGSRGSML 119
+ V + + C V P KW G+ + ++ L
Sbjct: 12 RNLNVRYQ----SNATLVCKVTGHPKP-IVKWYRQ--GKEIIADGLKYRIQEFKGGYHQL 64
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
VT+ D A N G+ +V + K P+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 72.9 bits (179), Expect = 5e-16
Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 11 TSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK---S 63
++ R+++ + L + + + AG Y+C A + KG+ + L + + S
Sbjct: 45 STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS 104
Query: 64 DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP 123
+ G E ++ C V + P + W ++N E + RF+ + + L+
Sbjct: 105 PQEFKQG----EDAEVVCRVSSSPAP-AVSWLYHN-EEVTTISDNRFAMLANNN-LQILN 157
Query: 124 VTELDYGTLSCAAQNAIGTQVT 145
+ + D G C + ++
Sbjct: 158 INKSDEGIYRCEGRVEARGEID 179
Score = 44.4 bits (105), Expect = 9e-06
Identities = 19/121 (15%), Positives = 30/121 (24%), Gaps = 14/121 (11%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLRY 121
S + VG ES C +P + + GE + S L
Sbjct: 10 SKVELSVG----ESKFFTCTAIGEPES-IDWYNPQ--GEKIISTQRVVVQKEGVRSRLTI 62
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCT 178
D G C A +A G + + K + + + C
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFK--QGEDAEVVCR 119
Query: 179 P 179
Sbjct: 120 V 120
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 3 GGIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVK 56
+ + R +L+N +L + +++ G Y+C E + + V
Sbjct: 133 HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 72.7 bits (178), Expect = 1e-15
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 14/147 (9%)
Query: 6 PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP---IC 61
+ + R+ + + V+R+ GTY C G + ++KL V P
Sbjct: 54 KITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV 113
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN------NSGETLDVGSERFSSGSR 115
+G + C+ + P + W + N T + +
Sbjct: 114 NIPSSATIG----NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT 169
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
L + P++ D G SC A+N GT
Sbjct: 170 TGELVFDPLSASDTGEYSCEARNGYGT 196
Score = 42.6 bits (100), Expect = 4e-05
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 17/126 (13%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR------- 115
+ + V + CA R +WKF+ T V + S
Sbjct: 12 PEVRIPEN----NPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSS 172
+ + + VT D GT +C G ++++ P S +
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG--NR 124
Query: 173 VHISCT 178
++C+
Sbjct: 125 AVLTCS 130
Score = 39.6 bits (92), Expect = 5e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 6 PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
N+S + + LV +S G Y C A N G ++ +R++
Sbjct: 157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS-NAVRME 206
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 74.2 bits (182), Expect = 1e-15
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 12/136 (8%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC-------KSDRIV 67
+ + + Y+CSA+ + S ++L+V+ ++ +
Sbjct: 139 SFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVR 198
Query: 68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-VGSERFSSGSRGSMLRYTPVTE 126
I G E+ I C+ + + NN+ + + + L V
Sbjct: 199 IRG----EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF 254
Query: 127 LDYGTLSCAAQNAIGT 142
G SC A N G
Sbjct: 255 QHAGNYSCVASNVQGK 270
Score = 72.3 bits (177), Expect = 5e-15
Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 16/173 (9%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIV 69
S+ L + Q+ GTY+C+ ++ + L VK + + +V
Sbjct: 45 YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFE 103
Query: 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDY 129
+ + C + G L + +S +
Sbjct: 104 D----QDALLPCLLTDPVLEAGVSLVRVR-GRPLMRHT-NYSFSPWHG-FTIHRAKFIQS 156
Query: 130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
C+A ++ + V P PP V E + I C+
Sbjct: 157 QDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCS 209
Score = 36.9 bits (85), Expect = 0.004
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
IP + +L L +V Q AG Y C A N +G+ +++ + RV +
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTS-MFFRVVESA 283
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 74.1 bits (181), Expect = 1e-15
Identities = 30/231 (12%), Positives = 60/231 (25%), Gaps = 28/231 (12%)
Query: 12 SARIILSNQSLVLQKVSRQSAGT-YKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVG 70
+ N L + + + Y C+ G+ ++ ++ P C + +
Sbjct: 81 PLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELG- 139
Query: 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
+D++C + + W N + L + ++S G L D G
Sbjct: 140 THDKYGIDLYCGILYAKHYNNITWYKN--NQELIIDGTKYSQS--GQNLIIHNPELEDSG 195
Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT--------SSVHISC----T 178
C + P Q+ + +I+C T
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVST 255
Query: 179 PG----------YDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLG 219
G +YS + + L T E +G
Sbjct: 256 SLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIG 306
Score = 63.3 bits (153), Expect = 8e-12
Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 16/158 (10%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-----QLKLRVKYA 58
L + S Q+L++ + +G Y C ++ L V +
Sbjct: 167 NQEL-IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPS 225
Query: 59 PICKSDRIV--IVGASRSESVDIHCAVEADPPAR---SFKWKFNNSGETLDVGSERFSSG 113
+ I+ + + E +I C + W+ +
Sbjct: 226 QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILT 285
Query: 114 SRG----SMLRYTPVTELDYGTL-SCAAQNAIGTQVTP 146
S G + L + VTE G +C N +
Sbjct: 286 SSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLT 323
Score = 40.2 bits (93), Expect = 3e-04
Identities = 19/149 (12%), Positives = 33/149 (22%), Gaps = 9/149 (6%)
Query: 33 GTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSF 92
+ +T S L + + + +G E C D
Sbjct: 9 TEFFNKMRDTLPAKDSKWLNPSCMFGGT--MNDMAALG----EPFSAKCPPIEDSLLSHR 62
Query: 93 KWKFNNSGETLDVGSERFSSGSR--GSMLRYTPVTELDYGTL-SCAAQNAIGTQVTPCLY 149
+N +G R R L T D C G V +
Sbjct: 63 YNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR 122
Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCT 178
+ P+ + + + C
Sbjct: 123 SHIRKPPSCIPETYELGTHDKYGIDLYCG 151
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 73.1 bits (179), Expect = 2e-15
Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 12/147 (8%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC-- 61
G + + +++K + TY C + E+TS + L+V
Sbjct: 128 GGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPP 187
Query: 62 -----KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSR 115
S + I G E+ I C+ + K ++ + + S+ + + +
Sbjct: 188 QIKLEPSKLVRIRG----EAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKK 243
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
L V D G SC A N +GT
Sbjct: 244 VRALSLNAVDFQDAGIYSCVASNDVGT 270
Score = 72.3 bits (177), Expect = 4e-15
Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 16/181 (8%)
Query: 6 PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----IC 61
P++ + +L + + ++ GTY+C+ + ++ + L VK +
Sbjct: 37 PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT-IHLYVKDPAHSWNLL 95
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
+ V+ G + + C + S G + +
Sbjct: 96 AQEVTVVEG----QEAVLPCLITDPALKDSVSLMRE--GGRQVLRKTVYFFSPWRG-FII 148
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISC 177
LD T C + ++ V P+PPQ ++ + I C
Sbjct: 149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVC 208
Query: 178 T 178
+
Sbjct: 209 S 209
Score = 38.8 bits (90), Expect = 0.001
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
IPL + ++L L V Q AG Y C A N G T+ + +V +
Sbjct: 230 IPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTAT-MNFQVVESH 283
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 71.0 bits (174), Expect = 3e-15
Identities = 29/147 (19%), Positives = 43/147 (29%), Gaps = 23/147 (15%)
Query: 4 GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G + + I +S Q L L+ V R AG Y C + S + L V+ P
Sbjct: 40 GAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVP 99
Query: 60 ICKSDRIVI----VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
+ + + + C P + W +
Sbjct: 100 -----FFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG--TTKIG------GPAPS 146
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
S+L T VT SC A N G
Sbjct: 147 PSVLNVTGVT--QSTMFSCEAHNLKGL 171
Score = 45.9 bits (109), Expect = 2e-06
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 19/131 (14%)
Query: 53 LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF-- 110
L++ AP V G + V ++C+VE +W + G + + +
Sbjct: 3 LKLMGAP---VKLTVSQG----QPVKLNCSVEGMEEP-DIQWVKD--GAVVQNLDQLYIP 52
Query: 111 -SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVR 166
S L V D G C ++ T+++ + + G P P++ +V
Sbjct: 53 VSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTVEPKDLAVP 111
Query: 167 NETTSSVHISC 177
+SC
Sbjct: 112 PNAP--FQLSC 120
Score = 40.9 bits (96), Expect = 1e-04
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
T+ + VL + + C A N KG A+S + ++
Sbjct: 135 RGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 73.6 bits (180), Expect = 5e-15
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICKSDRIVIVGAS 72
R ++ + V+R G Y CS+ ++ + + I ++
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEID 339
Query: 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
+ E +A P R W F+ ++ + G + + G
Sbjct: 340 QYEEFCFSVRFKAYPQIR-CTWTFS--RKSFPCEQKGL---DNGYSISKFCNHKHQPGEY 393
Query: 133 SCAAQNAIGT 142
A+N
Sbjct: 394 IFHAENDDAQ 403
Score = 67.8 bits (165), Expect = 4e-13
Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 25/188 (13%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-IC 61
+ + ++ + VL + +C A N G + + + P
Sbjct: 177 DSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQTPQTT 233
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS------- 114
+ VG E + I C W+ + L+ G+ S
Sbjct: 234 LPQLFLKVG----EPLWIRCKAVHVNHGFGLTWELE--NKALEEGNYFEMSTYSTNRTMI 287
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTS 171
R + V D G +C++ V + K + +
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQSAL-----VTIVEKGFINATNSSEDYEIDQYE 342
Query: 172 SVHISCTP 179
S
Sbjct: 343 EFCFSVRF 350
Score = 64.0 bits (155), Expect = 8e-12
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 21/139 (15%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
+ + + S+ + G Y A N + T L ++ P +++
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKM-FTLNIRRKP-----QVLAEA--- 422
Query: 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVG----------SERFSSGSRGSMLRYTP 123
+ C + P S+ WK + + R G S
Sbjct: 423 -SASQASCFSDGYPLP-SWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM 480
Query: 124 VTELDYGTLSCAAQNAIGT 142
+ + C A N++GT
Sbjct: 481 SEAIKGFLVKCCAYNSLGT 499
Score = 62.0 bits (150), Expect = 3e-11
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 17/162 (10%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
S+V+ K++ AG Y + T + ++ + R +++
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYTLRRPYFRKMENQDAL--V 160
Query: 81 CAVEADPPARSFKWKFNNS-GETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139
C E+ P +W +S GE+ S + EL + C A+N
Sbjct: 161 CISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKV------LHELFGTDIRCCARNE 213
Query: 140 IGTQVTPCLYQVVLAGKPQ--PPQNCSVRNETTSSVHISCTP 179
+G + T L+ + L PQ PQ E + I C
Sbjct: 214 LGRECT-RLFTIDLNQTPQTTLPQLFLKVGEP---LWIRCKA 251
Score = 46.2 bits (109), Expect = 6e-06
Identities = 27/169 (15%), Positives = 43/169 (25%), Gaps = 23/169 (13%)
Query: 27 VSRQSAGTYKCSAINTKGEATS----------------NQLKLRVKYAPICKSDRIVIVG 70
Q KC IN K +S LR + + V V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV- 60
Query: 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
S S+ + V+A S W F +S L+ + +TE G
Sbjct: 61 -DVSASITLQVLVDAPGNI-SCLWVFKHSS--LNCQPHFDLQNRGVVSMVILKMTETQAG 116
Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
Q+ L+ V + + + + C
Sbjct: 117 EYLLFIQSEATN--YTILFTVSIRNTLLYTLRRPYFRKMENQDALVCIS 163
Score = 32.4 bits (73), Expect = 0.17
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
S L KC A N+ G + + L
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLGTSCET-ILLNSPGPF 512
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 69.9 bits (171), Expect = 8e-15
Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 20/151 (13%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICK--SDRIVIVG 70
+ L + + G Y+C S + ++ P + DR V
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121
Query: 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
++ C + P W + L S L +
Sbjct: 122 ----TPFNLSCQAQGPPEPVDLLWLQD--AVPLATAPGHGPQRS----LHVPGLN--KTS 169
Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
+ SC A NA G + VL P Q
Sbjct: 170 SFSCEAHNAKGVTTSRTATITVL-----PQQ 195
Score = 46.0 bits (109), Expect = 2e-06
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNN--------SGETLDVGSERFSSGS 114
+ G + + C ++ W + + + +G +
Sbjct: 10 GNITGARG----LTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWI 65
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
S LR T + D G C T V+ V L G P + P++ +V T
Sbjct: 66 VVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYFLEEPEDRTVAANTP- 123
Query: 172 SVHISC 177
++SC
Sbjct: 124 -FNLSC 128
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 70.1 bits (171), Expect = 8e-15
Identities = 21/147 (14%), Positives = 37/147 (25%), Gaps = 12/147 (8%)
Query: 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
+ P + LV+ + G Y C + E T Q L V
Sbjct: 48 IFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTK-QEHLSVVKPLT 106
Query: 61 ---CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRG 116
+ + C V A P +W E + G
Sbjct: 107 LSVHSERSQFPDF----SVLTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 117 SM--LRYTPVTELDYGTLSCAAQNAIG 141
S+ + + + ++C +N
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 33.1 bits (75), Expect = 0.058
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 3 GGIPLAHNTSARI-ILSNQSL---VLQKVSRQSAGTYKCSAINTKGEA 46
G P + + + SL V + + C N K EA
Sbjct: 143 GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 69.5 bits (170), Expect = 2e-14
Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 26/158 (16%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS--- 74
+ L+ V + AG Y C N S +L V P + V S+
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 75 -----------ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP 123
++ + C P ++W N L + +
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKN--ELPL--------THETKKLYMVPY 171
Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
V GT C N +Q + ++++
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDS-KKVEIIIDELNNLGH 208
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 69.5 bits (170), Expect = 2e-14
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 21/172 (12%)
Query: 5 IPLAHNTSARIILSNQSL----VLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP- 59
+ S R+ + +L +Q Q G Y C A N G+A S L++
Sbjct: 50 VSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD 109
Query: 60 ---ICKSDRIVIVGASRSESVDIHC-AVEADPPARSFKWKFNN-----SGETLDVGSERF 110
+ D V G E+ + C + P + W + S R
Sbjct: 110 DFRVEPKDTRVAKG----ETALLECGPPKGIPEP-TLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 111 SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
G+ L + V +D G C AQN +GT+ + +V K +
Sbjct: 165 RIVDGGN-LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV-KAAAHHH 214
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 70.7 bits (173), Expect = 3e-14
Identities = 32/199 (16%), Positives = 52/199 (26%), Gaps = 20/199 (10%)
Query: 4 GIPLAHNTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
G + SLV + G Y+C A G A+S + R Y
Sbjct: 45 GKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASP 104
Query: 63 S---DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV----GSERFSSGSR 115
+ ++ I G + C + P WK SG + R ++G
Sbjct: 105 AKTHEKTPIEG----RPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160
Query: 116 GS--MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSV 173
G+ T D C A+NA + + + S
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220
Query: 174 HISCTPGYDGGLPQTFTLE 192
+ G +
Sbjct: 221 DMMAKAG------DVTMIY 233
Score = 69.6 bits (170), Expect = 6e-14
Identities = 36/147 (24%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 4 GIPLAHNTSARI----ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G + N RI S + L+ + + G Y C N G+ + LKL V AP
Sbjct: 250 GKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309
Query: 60 ----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
+ +V G + V I C V P + W N + L G +
Sbjct: 310 KYEQKPEKVIVVKQG----QDVTIPCKVTGLPAP-NVVWSHN--AKPLSGGRATVTDSG- 361
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
L V D G C A N G
Sbjct: 362 ---LVIKGVKNGDKGYYGCRATNEHGD 385
Score = 64.5 bits (157), Expect = 4e-12
Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 23/181 (12%)
Query: 15 IILSNQSLVLQKVSRQSA---GTYKCSAINTKGEATSNQLKLRVKYAPICKSD---RIVI 68
+ +L V+++ Y C+A N + ++ +K S V
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 215
Query: 69 VGASRS------ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE---RFSSGSRGSML 119
S+ + I+C ++P + N G+ ++ E + + G L
Sbjct: 216 QYVSKDMMAKAGDVTMIYCMYGSNPMG-YPNYFKN--GKDVNGNPEDRITRHNRTSGKRL 272
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHIS 176
+ D G +C N +G ++ + P Q P+ + + V I
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQK-HSLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIP 330
Query: 177 C 177
C
Sbjct: 331 C 331
Score = 47.6 bits (113), Expect = 2e-06
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 13/132 (9%)
Query: 53 LRVKYAPICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER 109
L V P+ K ++ + + C +E + + WK + G++ +
Sbjct: 1 LPVDKYPVLKDQPAEVLFREN----NPTVLECIIEGNDQGVKYSWKKD--GKSYNWQEHN 54
Query: 110 FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC--LYQVVLAGKPQPPQNCSVRN 167
+ L + D G C A+ G + + L P +
Sbjct: 55 AALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI- 113
Query: 168 ETTSSVHISCTP 179
+ C
Sbjct: 114 -EGRPFQLDCVL 124
Score = 41.8 bits (98), Expect = 1e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
PL + R +++ LV++ V G Y C A N G+ ++V
Sbjct: 347 AKPL---SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFE-TLVQV 394
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 67.5 bits (165), Expect = 4e-14
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 18/132 (13%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGA 71
I Q K + +G Y C T + S+ + L V + + G
Sbjct: 45 LIPTHTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQTPHLEFQEG- 100
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
E++ + C D P + N + G
Sbjct: 101 ---ETIMLRCHSWKDKPLVKVTFFQNG---------KSQKFSHLDPTFSIPQANHSHSGD 148
Query: 132 LSCAAQNAIGTQ 143
C
Sbjct: 149 YHCTGNIGYTLF 160
Score = 46.3 bits (110), Expect = 1e-06
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
+ + + + + +G Y C+ +S + + V+
Sbjct: 132 LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 30.6 bits (69), Expect = 0.30
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+SV + C P + S +W N + + D G +C
Sbjct: 20 DSVTLTCQGARSPESDSIQWFHNGN-----------LIPTHTQPSYRFKANNNDSGEYTC 68
Query: 135 AAQNAIGT 142
+
Sbjct: 69 QTGQTSLS 76
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 70.3 bits (172), Expect = 4e-14
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVS----RQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
+A + + + +LV+ S + G Y+C A N G A SN+++L+V +P+
Sbjct: 58 FNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPL 117
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
+ + V + + C P+ W + +R S G G L
Sbjct: 118 WPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS--SMEPITQDKRVSQGHNGD-LY 174
Query: 121 YTPVTELD-YGTLSCAAQNAIG 141
++ V D SC A+
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFT 196
Score = 69.5 bits (170), Expect = 9e-14
Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 24/189 (12%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQ-SAGTYKCSAINTKGEAT--SNQLKLRVKYAPI 60
+ N L V Q Y C+A N L+V
Sbjct: 155 SMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG 214
Query: 61 CKSDRIVIVG---------ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS 111
+ R + + C P W D+ S++
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP-DIAWYKKGG----DLPSDKAK 269
Query: 112 SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNE 168
+ LR T V+E D G C A N +G+ V + P P+N +
Sbjct: 270 FENFNKALRITNVSEEDSGEYFCLASNKMGSIR--HTISVRVKAAPYWLDEPKNLILAPG 327
Query: 169 TTSSVHISC 177
+ C
Sbjct: 328 --EDGRLVC 334
Score = 69.1 bits (169), Expect = 9e-14
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 12/142 (8%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---I 60
G L + A+ N++L + VS + +G Y C A N G + +RVK AP
Sbjct: 260 GGDLPSD-KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH-TISVRVKAAPYWLD 317
Query: 61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
+ I+ G E + C +P + +W N GE L + G +
Sbjct: 318 EPKNLILAPG----EDGRLVCRANGNPKP-TVQWMVN--GEPLQSAPPNPNREVAGDTII 370
Query: 121 YTPVTELDYGTLSCAAQNAIGT 142
+ C N G
Sbjct: 371 FRDTQISSRAVYQCNTSNEHGY 392
Score = 42.2 bits (99), Expect = 9e-05
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 19/126 (15%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-----RFSSGSRGS 117
D IV +++ I C + +P SF W N ++ + R SG+
Sbjct: 25 KDHIVDPR----DNILIECEAKGNPAP-SFHWTRN--SRFFNIAKDPRVSMRRRSGTLVI 77
Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSV 173
R E G C A+N GT ++ ++ ++ P + V+ + +
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALS-NRIRLQVSKSPLWPKENLDPVVVQEG--APL 134
Query: 174 HISCTP 179
+ C P
Sbjct: 135 TLQCNP 140
Score = 40.2 bits (94), Expect = 4e-04
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 4 GIPL-AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
G PL + + ++ +++ + S Y+C+ N G +N
Sbjct: 350 GEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLAN 396
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 68.3 bits (167), Expect = 5e-14
Identities = 43/162 (26%), Positives = 61/162 (37%), Gaps = 23/162 (14%)
Query: 14 RIILSNQSLVLQKV-----SRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSD 64
R++L + SL ++ SR G Y C A N GEA S+ L V SD
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120
Query: 65 RIVIVGASRSESVDIHC-AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP 123
+V VG E + C P + WK + G LD ER + G L T
Sbjct: 121 VMVAVG----EPAVMECQPPRGHPEP-TISWKKD--GSPLDDKDERITIRG-GK-LMITY 171
Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQN 162
+ D G C N +G + + VL +P + +
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLE-RPSFVKAAAH 212
Score = 47.9 bits (114), Expect = 7e-07
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 22/136 (16%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER-------FSSGS- 114
SD IV G E ++C E P + +W GE ++ + SGS
Sbjct: 17 SDLIVSKG----EPATLNCKAEGRPTP-TIEWYKG--GERVETDKDDPRSHRMLLPSGSL 69
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
+ + + D G C A+N +G V+ V + Q P + V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV--AVGE 127
Query: 172 SVHISCTPGYDGGLPQ 187
+ C P G P+
Sbjct: 128 PAVMECQPPR--GHPE 141
Score = 47.5 bits (113), Expect = 9e-07
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G PL RI + L++ + AG Y C N GE S +L V P
Sbjct: 149 DGSPLDDKDE-RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 69.5 bits (170), Expect = 5e-14
Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 22/168 (13%)
Query: 3 GGIPLAHNTSARII--LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ--LKLRVKYA 58
+P+ + S I L + +L ++ G Y+C A N+ G S+ L +RV+
Sbjct: 145 DFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV 204
Query: 59 P----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
I ++ G +V+I C P KW E L + G
Sbjct: 205 APRFSILPMSHEIMPG----GNVNITCVAVGSPMPY-VKWMQG--AEDLT-PEDDMPVGR 256
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
D +C A +++G Q+ + P+
Sbjct: 257 ----NVLELTDVKDSANYTCVAMSSLGVIEAVA--QITVKSLPKAGTK 298
Score = 67.5 bits (165), Expect = 2e-13
Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 32/197 (16%)
Query: 4 GIPLAHNTSARIIL---SNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAP 59
G + I + L +Q + Y+C A N+ GE T + KL V
Sbjct: 44 GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH-AKLTVLRED 102
Query: 60 ICK----------SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-- 107
++V + + CA +P W + +D +
Sbjct: 103 QLPSGFPNIDMGPQLKVVERT----RTATMLCAASGNPDP-EITWFKD--FLPVDPSASN 155
Query: 108 ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC--LYQVVLAGKP---QPPQN 162
R G+ L+ E D G C A N+ G + + LY V P P +
Sbjct: 156 GRIKQLRSGA-LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMS 214
Query: 163 CSVRNETTSSVHISCTP 179
+ +V+I+C
Sbjct: 215 HEIM--PGGNVNITCVA 229
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 67.8 bits (166), Expect = 5e-14
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 20/161 (12%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP- 59
G L + ++ + +L + ++ G Y C A N GE ++ KL ++ P
Sbjct: 44 FGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQATPQ 102
Query: 60 -----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--S 112
K VG ++ +H P + W + L SE + +
Sbjct: 103 FHPGYPLKEKYYGAVG----STLRLHVMYIGRPVP-AMTWFHG--QKLLQN-SENITIEN 154
Query: 113 GSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVTPCLYQVV 152
+ L V + G N GT ++
Sbjct: 155 TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 70.0 bits (171), Expect = 6e-14
Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 15/183 (8%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADP------PARSFKWKFNNSGETLDVGSERFSSGSRG 116
+V + + C ++ A WK N T+ + +
Sbjct: 11 ESPVVQLH----SNFTAVCVLKEKCMDYFHVNANYIVWKTN--HFTIPKEQYTIINRT-A 63
Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
S + +T + L+ L+C + ++ P+ P+N S +
Sbjct: 64 SSVTFTDIASLN-IQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCE 122
Query: 177 CTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK 236
G + L FTL+ + DTP D V + V + NA
Sbjct: 123 WDGGRETHLETNFTLK-SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENAL 181
Query: 237 GRS 239
G+
Sbjct: 182 GKV 184
Score = 55.4 bits (133), Expect = 4e-09
Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 15/244 (6%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAIN-TKGEATSNQLKLRVKYAPICKSDRIVI 68
II S V C+ + + E + + P + + +
Sbjct: 53 KEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP--EKPKNLS 110
Query: 69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
+ + + + +F K + + + Y+ V +
Sbjct: 111 CIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKF-ADCKAKRDTPTSCTVDYSTVYFV 169
Query: 128 DYGTLSCAAQNAIGT-QVTPCLYQVVLAGKPQPPQNCSVR--NETTSSVHISCTPGYDGG 184
+ + A+NA+G + V KP PP N SV E +S + ++ T
Sbjct: 170 NI-EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS 228
Query: 185 LP-QTFTLELYSASDL---NLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL 240
+ + ++ + + T +FT++DL + R+ + G+
Sbjct: 229 VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI--RCMKEDGKGY 286
Query: 241 PVIW 244
W
Sbjct: 287 WSDW 290
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 68.0 bits (166), Expect = 1e-13
Identities = 35/212 (16%), Positives = 62/212 (29%), Gaps = 24/212 (11%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGA 71
S S + S +G Y+C + S+ ++L + + S R+ G
Sbjct: 42 ATQTSTPSYRITSASVNDSGEYRCQRGLSGR---SDPIQLEIHRGWLLLQVSSRVFTEG- 97
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
E + + C D + + N + F S L GT
Sbjct: 98 ---EPLALRCHAWKDKLVYNVLYYRNG---------KAFKFFHWNSNLTILKTNISHNGT 145
Query: 132 LSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT--SSVHISCTPGYDGGLPQTF 189
C+ + V P P N SV + + V +SC L Q
Sbjct: 146 YHCSGMGKHRYTSAG-ISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET---KLLLQRP 201
Query: 190 TLELYSASDLNLLVNLTNLDTPAFTLEDLGLD 221
L+LY + + + + + +
Sbjct: 202 GLQLYFSFYMGSKTLRGRNTSSEYQILTARRE 233
Score = 64.6 bits (157), Expect = 2e-12
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 15/130 (11%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRI-----VIVGAS 72
N +L + K + GTY CS + TS + + VK ++ G
Sbjct: 129 WNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASVTSPLLEG-- 185
Query: 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
V + C + + F+ GS+ + S + D G
Sbjct: 186 --NLVTLSCETKLLLQRPGLQLYFSFYM-----GSKTLRGRNTSSEYQILTARREDSGLY 238
Query: 133 SCAAQNAIGT 142
C A G
Sbjct: 239 WCEAATEDGN 248
Score = 34.9 bits (80), Expect = 0.018
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT--SNQLKLRVK 56
+ + R ++ + R+ +G Y C A G S +L+L+V
Sbjct: 213 SKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 30.3 bits (68), Expect = 0.58
Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 15/113 (13%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
E+V +HC V P + S +W N + ++ + R T + D G C
Sbjct: 17 ETVTLHCEVLHLPGSSSTQWFLNGT-----------ATQTSTPSYRITSASVNDSGEYRC 65
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ 187
+ + Q E + + C D +
Sbjct: 66 QRGLSGRSDPIQLEIHRGWL-LLQVSSRVFTEGE---PLALRCHAWKDKLVYN 114
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 68.9 bits (168), Expect = 1e-13
Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 13/150 (8%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICKSDRIVIVGAS 72
R ++ + V+R G Y CS+ ++ + + I ++
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA----LVTIVEKGFINATNSSEDYEID 339
Query: 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
+ E +A P R W F+ ++ G + + G
Sbjct: 340 QYEEFCFSVRFKAYPQIR-CTWTFS--RKSF---PCEQKGLDNGYSISKFCNHKHQPGEY 393
Query: 133 SCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
A+N ++ + + + +
Sbjct: 394 IFHAENDDAQFT--KMFTLNIRSGTKHHHH 421
Score = 62.0 bits (150), Expect = 2e-11
Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 24/229 (10%)
Query: 4 GIPLAHNTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
L + S+V+ K++ AG Y + T + ++ +
Sbjct: 86 HSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYT 144
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
R + C E+ P +W + + E + +
Sbjct: 145 LRRPYFRKM--ENQDALVCISESVPEP-IVEWVLCD-SQGESCKEESPAVVKKEE-KVLH 199
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY- 181
+ D C A+N +G + T + ++ + I C +
Sbjct: 200 ELFGTDI---RCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--VGEPLWIRCKAVHV 254
Query: 182 -----------DGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLG 219
+ L + E+ + S ++ + + D G
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303
Score = 48.5 bits (115), Expect = 9e-07
Identities = 27/180 (15%), Positives = 44/180 (24%), Gaps = 32/180 (17%)
Query: 27 VSRQSAGTYKCSAINTKGEATS----------------NQLKLRVKYAPICKSDRIVIVG 70
Q KC IN K +S LR + + V V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV- 60
Query: 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
S S+ + V+A S W F +L+ + +TE G
Sbjct: 61 -DVSASITLQVLVDAPGNI-SCLWVFK--HSSLNCQPHFDLQNRGVVSMVILKMTETQAG 116
Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCTPGYDGGLPQ 187
Q+ L+ V + + + C +P+
Sbjct: 117 EYLLFIQSEATN--YTILFTVSIRNTLLYTLRRPYFRKMENQDA---LVCIS---ESVPE 168
Score = 40.0 bits (93), Expect = 4e-04
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ + + S+ + G Y A N + T L ++
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK-MFTLNIRSGT 416
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 68.2 bits (166), Expect = 1e-13
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 8/123 (6%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVKYAPICKSDRIVIVGASRSESVDI 79
+L S+ C + E + L V Y P +
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139
C ++P + W G + ++G+ L PV + TL C NA
Sbjct: 238 TCDARSNPEPTGYNWSTTM-------GPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNA 290
Query: 140 IGT 142
+G
Sbjct: 291 LGA 293
Score = 60.9 bits (147), Expect = 5e-11
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 11/139 (7%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIV 67
L N SL + + + G Y C + + S + LRV P +
Sbjct: 70 ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQL 129
Query: 68 IVGASRSESVDIHC-AVEADPPARSFKWKFNNSGETLDVGSERFSSG--SRGSMLRYTPV 124
C + PPA+ W + G F SG + S+ P
Sbjct: 130 TGE----PVPMARCVSTGGRPPAQ-ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Query: 125 TELDYGTLSCAAQNAIGTQ 143
+++D ++C ++ +
Sbjct: 185 SQVDGKNVTCKVEHESFEK 203
Score = 41.2 bits (96), Expect = 1e-04
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
+ L+++ V + T C+ N G + +L ++V
Sbjct: 260 PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQA-ELTVQV 302
Score = 27.4 bits (60), Expect = 5.4
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 25/137 (18%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSF----KWKFNNSGETLDVGSER----FSSGS 114
+ +G +SV + C ++ + W + ++ V + +S
Sbjct: 8 TQVPGFLG----DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 115 RGSM-------------LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
R LR + D G +C + ++ VLA +
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE 123
Query: 162 NCSVRNETTSSVHISCT 178
V+ C
Sbjct: 124 VQKVQLTGEPVPMARCV 140
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 67.8 bits (165), Expect = 2e-13
Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 17/155 (10%)
Query: 1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP- 59
G L + + + +C+A S++ L+V+ A
Sbjct: 127 ECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK 186
Query: 60 ------ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG 113
+ ++ ++ G ++ + C ++ + + W N + S
Sbjct: 187 AIPVVSVPETSHLLKKG----DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWH 242
Query: 114 S------RGSMLRYTPVTELDYGTLSCAAQNAIGT 142
R L + D G C A N G+
Sbjct: 243 RGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277
Score = 61.3 bits (148), Expect = 3e-11
Identities = 22/174 (12%), Positives = 42/174 (24%), Gaps = 18/174 (10%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVI 68
+ + + +K GTY CS N + + V+ +
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGK 104
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
+ C + DP + + G++L F + +
Sbjct: 105 ED----SDALVRCPL-TDPQVSQYSLIECD-GKSLPTDL-TFVPNPKAGITIKNVKRAYH 157
Query: 129 YGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
+ CAAQ + V P + + CT
Sbjct: 158 RLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCT 211
Score = 32.8 bits (74), Expect = 0.092
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSN 49
+L + +G + C A NT G A
Sbjct: 253 TLTISSARVDDSGVFMCYANNTFGSANVT 281
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 65.9 bits (160), Expect = 3e-13
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 8 AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSD 64
H TS + + S+ + + GTY+C G A L V P C D
Sbjct: 72 VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK-FLLTVLVKPSGTRCFVD 130
Query: 65 RIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPV 124
+G + C + F+W+ + +T+ + + ++
Sbjct: 131 GSEEIG----NDFKLKCEPKEGSLPLQFEWQKLSDSQTM---PTPWLAEMTSPVISVKNA 183
Query: 125 TELDYGTLSCAAQNAIGTQ 143
+ GT SC QN +G+
Sbjct: 184 SSEYSGTYSCTVQNRVGSD 202
Score = 38.5 bits (89), Expect = 9e-04
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
T +++ + ++ S + +GTY C+ N G L+L V
Sbjct: 159 LSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCM-LRLDV 210
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 66.1 bits (161), Expect = 3e-13
Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 26/167 (15%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK--------SDR 65
++ + SL+++ V G Y C N G L V + ++
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDVVERSRHRPILQAGLPANA 128
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGET----------LDVGSERFSSGSR 115
+VG V+ C V +D +W + L V + S
Sbjct: 129 STVVG----GDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
+L VTE D G C N IG + + K Q P
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQ--ANQSAWLTVLPKQQAPGR 228
Score = 42.6 bits (100), Expect = 5e-05
Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 14/148 (9%)
Query: 39 AINTKGEATSNQLKLR-VKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN 97
A + E ++N+ + K V +V C +P + +W N
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAA----NTVKFRCPAGGNPMP-TMRWLKN 56
Query: 98 NSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP 157
+ + ++ L V D G +C +N G+ VV +
Sbjct: 57 GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH 116
Query: 158 QP------PQNCSVRNETTSSVHISCTP 179
+P P N S V C
Sbjct: 117 RPILQAGLPANASTVVG--GDVEFVCKV 142
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 67.1 bits (163), Expect = 4e-13
Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 30/197 (15%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
P++ ++RI + L + +G Y C N+ + +
Sbjct: 45 SKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK-ISAKFVENEPNL 103
Query: 63 S-------DRIVIVGASRSESVDIHCAVEADPPAR-----SFKWKFNNSGETLDVGSERF 110
+ + V + C +W + + L + + F
Sbjct: 104 CYNAQAIFKQKLPVA----GDGGLVCPYMEFFKNENNELPKLQWYKD--CKPLLLDNIHF 157
Query: 111 SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC----LYQVVLAGKPQPPQNCSVR 166
S L V E G +C A + P + + KP P S
Sbjct: 158 SGV--KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA 215
Query: 167 NETT-----SSVHISCT 178
NET S + + C
Sbjct: 216 NETMEVDLGSQIQLICN 232
Score = 62.0 bits (150), Expect = 2e-11
Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 22/160 (13%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN---QLKLRVKYAP 59
PL + L++ V+ + G Y C A T ++
Sbjct: 146 DCKPL-LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204
Query: 60 ICKSDRIV-----IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---- 110
IV + + + C V WK+N S D
Sbjct: 205 KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYS 263
Query: 111 -------SSGSRGSMLRYTPVTELDY-GTLSCAAQNAIGT 142
+ ++L + + Y +C A+N G
Sbjct: 264 VENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI 303
Score = 43.6 bits (102), Expect = 3e-05
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
Query: 58 APICKS-DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG 116
A CK + +I+ +S +E C + + + W ++S + +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SS 172
L + P D G C +N+ + + + +P N +
Sbjct: 63 K-LWFVPAKVEDSGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120
Query: 173 VHISC 177
+ C
Sbjct: 121 GGLVC 125
Score = 33.5 bits (76), Expect = 0.059
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQ-SAGTYKCSAINTKGEATSN-QLKLRV 55
+ + + R L + ++ + + C A NT G + QL V
Sbjct: 262 YSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 65.0 bits (158), Expect = 4e-13
Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 22/149 (14%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
GG+ L + L Q + S G Y C + + +++ P
Sbjct: 37 GGVVLKEDA-----LPGQKTEFKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVK 87
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG---SERFSSGSRG 116
KS + G E+ + C E+ PP + W E + RF S
Sbjct: 88 AVKSSEHINEG----ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 117 --SMLRYTPVT-ELDYGTLSCAAQNAIGT 142
S L + E D G C ++ G+
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGS 172
Score = 43.9 bits (103), Expect = 1e-05
Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 9/84 (10%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
+ + + + C++ +W G L G +
Sbjct: 2 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKG--GVVLK------EDALPGQKTEF 53
Query: 122 TPVTELDYGTLSCAAQNAIGTQVT 145
++ +G SC
Sbjct: 54 KVDSDDQWGEYSCVFLPEPMGTAN 77
Score = 37.3 bits (86), Expect = 0.002
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKY 57
L + + +R +S+ L ++ ++ ++ G Y+C+ ++KG + + LRV+
Sbjct: 125 EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRVRS 183
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 64.8 bits (158), Expect = 8e-13
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 29/178 (16%)
Query: 4 GIPLAHNTSARIILSN---QSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAP 59
G +++ I + L +Q + Y+C A N GE + + +L V
Sbjct: 44 GKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS-TRLTVLRED 102
Query: 60 ICKS----------DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE- 108
++V + + CA +P W + +D +
Sbjct: 103 QIPRGFPTIDMGPQLKVVERT----RTATMLCAASGNPDP-EITWFKD--FLPVDTSNNN 155
Query: 109 ----RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
+ S S G+ L+ E D G C A N+ GT+ + + + G +
Sbjct: 156 GRIKQLRSESIGA-LQIEQSEESDQGKYECVATNSAGTRYS-APANLYVRGTKHHHHH 211
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 65.7 bits (160), Expect = 1e-12
Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 18/197 (9%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK- 62
++ + +L++ + S++ AG Y+ + +G+ S +LKL +
Sbjct: 45 EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDEAFKELMM 103
Query: 63 --SDRIVIVGA-----SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
+I + S +E + ++ V W N G + S+R +G
Sbjct: 104 EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHN--GSAIRY-SDRVKTGVT 160
Query: 116 GSM--LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSV 173
G L+ T D G + L+G+ + +++
Sbjct: 161 GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV----DLSGQAYDEAYAEFQRLKQAAI 216
Query: 174 HISCTPGYDGGLPQTFT 190
GGLP T
Sbjct: 217 AEKNRARVLGGLPDVVT 233
Score = 55.7 bits (134), Expect = 3e-09
Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 30/164 (18%)
Query: 4 GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
G + ++ + ++ + L + + + G Y + K + L +
Sbjct: 146 GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEA 204
Query: 62 KSDRIVIVGASRSE--------------------SVDIHCAVEADPPARSFKWKFNNSGE 101
++ + A+ +E ++++ C V DPP W N +
Sbjct: 205 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKN--EK 261
Query: 102 TLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
L + + R + V+ D G +N G+
Sbjct: 262 AL-ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304
Score = 39.1 bits (91), Expect = 7e-04
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 3 GGIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
LA + + + VS +G Y N G TS + V + P
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSV-FIP 316
Score = 37.6 bits (87), Expect = 0.002
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 10/128 (7%)
Query: 53 LRVKYAP--ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF 110
+ P + V +V + C V W + + V E+
Sbjct: 2 IDPFTGPHFVEYLSWEVTGE----CNVLLKCKVANIKKETHIVWYKD--EREISV-DEKH 54
Query: 111 SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT 170
L T ++ D G ++ G + A K + C +
Sbjct: 55 DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALSA 113
Query: 171 SSVHISCT 178
+ + I T
Sbjct: 114 TDLKIQST 121
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 65.0 bits (158), Expect = 2e-12
Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 22/195 (11%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQS------AGTYKCSAINTKGEATSNQLKLRVK 56
G + R I S+ LV + A Y C A N G S + +R
Sbjct: 42 DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 101
Query: 57 YAPICKSDRIVIVGASRSESVDIHCAVEADP--PARSFKWKFNNS--GETLDVGSERFSS 112
A ++D R S I C + + W + ++
Sbjct: 102 VAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 160
Query: 113 GSRGSMLRYTPVTELD-YGTLSCAAQNAIG--TQVTPCLYQVVL---AGKPQPPQNCSVR 166
G L V D Y + C ++ + T+++ ++V+ P V+
Sbjct: 161 LPSGE-LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQ 219
Query: 167 NETT----SSVHISC 177
++ + C
Sbjct: 220 KPLELMVAHTISLLC 234
Score = 63.4 bits (154), Expect = 9e-12
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 20/134 (14%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVI 68
+ R+ + +L+++ + +G Y C N+ G + + L V I + V
Sbjct: 262 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV-ETVLTVTAPLSAKIDPPTQTVD 320
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
G C +P + W + G+ + S+LR V + D
Sbjct: 321 FG----RPAVFTCQYTGNPIK-TVSWMKD--GKAIG---------HSESVLRIESVKKED 364
Query: 129 YGTLSCAAQNAIGT 142
G C +N +
Sbjct: 365 KGMYQCFVRNDRES 378
Score = 60.0 bits (145), Expect = 1e-10
Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 18/187 (9%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQ-SAGTYKCSAINTKGEAT--SNQLKLRVKYAPIC 61
P A ++L + L +++V + +Y+C + T S V PI
Sbjct: 149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208
Query: 62 KSDRIVIVGASRS------ESVDIHCAVEADPPARSFKW-KFNNSGETLDVGSERFSSGS 114
S + ++ + C + P SF+W KF
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQ 267
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
L D G C N++G + + + P +V
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE--TVLTVTAPLSAKIDPPTQTVDFG--R 323
Query: 172 SVHISCT 178
+C
Sbjct: 324 PAVFTCQ 330
Score = 41.1 bits (96), Expect = 2e-04
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 13/127 (10%)
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML-----RYTP 123
+ S S +I C +P W ++ G + S G ++
Sbjct: 14 IDFSNSTGAEIECKASGNPMP-EIIWIRSD-GTAVGDVPGLRQISSDGKLVFPPFRAEDY 71
Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCTPG 180
E+ +C A+N G+ ++ + V V +S I C
Sbjct: 72 RQEVHAQVYACLARNQFGSIISRDV-HVRAVVAQYYEADVNKEHV--IRGNSAVIKCLIP 128
Query: 181 YDGGLPQ 187
Sbjct: 129 SFVADFV 135
Score = 36.8 bits (85), Expect = 0.005
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKL 53
I S L ++ V ++ G Y+C N + A ++ +LKL
Sbjct: 347 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 63.2 bits (154), Expect = 2e-12
Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 17/149 (11%)
Query: 4 GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYA 58
G ++ +T + +S L + V++ ++G Y A N G+ATS +L ++ + A
Sbjct: 43 GQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
Query: 59 P--ICK--SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSG 113
P + V G V + V P K+ + G + + + S
Sbjct: 103 PPNFVQRLQSMTVRQG----SQVRLQVRVTGIPTP-VVKFYRD--GAEIQSSLDFQISQE 155
Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
L D GT S A N++G
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Score = 38.9 bits (91), Expect = 6e-04
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G + + +I SL++ + + +GTY +A N+ G ATS +L V+
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS-TAELLVQ 194
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 64.8 bits (157), Expect = 3e-12
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 22/183 (12%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
+ I ++L + ++ Q +GT+ C+ + + + + + V S G
Sbjct: 136 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQKASSIVYKKEGEQV 194
Query: 74 SESVDIHCAVEADPPARSFKWKFNNSGE-------TLDVGSERFSSGSRGSMLRYTPVTE 126
S + VE + W+ + L ++ L+
Sbjct: 195 EFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP 254
Query: 127 L------------DYGTLSCAAQNAIGT-QVTPCLYQVVLAGKPQPPQNCSVRNETTSSV 173
L G L+ A + G L + + C V T+ +
Sbjct: 255 LHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLT-CEVWGPTSPKL 313
Query: 174 HIS 176
+S
Sbjct: 314 MLS 316
Score = 59.0 bits (142), Expect = 2e-10
Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 29/180 (16%)
Query: 3 GGIPLAHNTSARIIL---SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G L +R L N L+++ + + + TY C + K E L
Sbjct: 47 GPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---- 102
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
SD ++ G +S+ + S + + S R + G L
Sbjct: 103 --NSDTHLLQG----QSLTLTLESPPGSSP-SVQCR-----------SPRGKNIQGGKTL 144
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
+ + D GT +C +V+ + + V S
Sbjct: 145 SVSQLELQDSGTWTCTVLQNQKKVEFK--IDIVVLAFQKASSIVYKKEGEQ--VEFSFPL 200
Score = 27.1 bits (59), Expect = 6.7
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL 53
++ V AG ++C ++ + +K+
Sbjct: 324 AKVSKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 62.2 bits (151), Expect = 3e-12
Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 22/147 (14%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSE 75
+N SL + + +G YKC S + L V + S +V+ G +
Sbjct: 49 TNSSLNIVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQASAEVVMEG----Q 101
Query: 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
+ + C + + + E + T T D GT C
Sbjct: 102 PLFLRCHGWRNWDVYKVIYYKDG---------EALKYWYENHNISITNATVEDSGTYYCT 152
Query: 136 AQNAIGTQVTPCLYQVVLAGKPQPPQN 162
+ + L V+ + P+
Sbjct: 153 GKVWQLDYESEPLNITVI----KAPRE 175
Score = 51.4 bits (123), Expect = 3e-08
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
+ + N ++ + + + +GTY C+ + + S L + V AP K
Sbjct: 124 GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
Score = 30.6 bits (69), Expect = 0.33
Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
E+V + C S KW N S S S L D G C
Sbjct: 20 ENVTLTCNGNNFFEVSSTKWFHNGS-----------LSEETNSSLNIVNAKFEDSGEYKC 68
Query: 135 AAQNAIGT 142
Q +
Sbjct: 69 QHQQVNES 76
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 62.6 bits (152), Expect = 4e-12
Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 18/145 (12%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC--KSDRIVIVGASRSE 75
S + + +G Y+C + S+ ++L V + + +
Sbjct: 52 QASSYFIDAATVDDSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWVFKEE----D 104
Query: 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
+ + C + + N G S T D G+ C
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKG---------RKYFHHNSDFYIPKATLKDSGSYFCR 155
Query: 136 AQNAIGTQVTPCLYQVVLAGKPQPP 160
+ + + G
Sbjct: 156 GLVGSKNVSSETVQITITQGLAVST 180
Score = 46.0 bits (109), Expect = 2e-06
Identities = 6/51 (11%), Positives = 19/51 (37%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ + N + K + + +G+Y C + +S +++ +
Sbjct: 126 NGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176
Score = 29.8 bits (67), Expect = 0.65
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+SV + C P +S +W N S S+ S T D G C
Sbjct: 23 DSVTLKCQGAYSPEDQSTQWFHNES-----------LISSQASSYFIDAATVDDSGEYRC 71
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISC 177
Q + + + V G V E +H+ C
Sbjct: 72 QTQLSTLSDP---VQLEVHIGWLLLQAPRWVFKE-EDPIHLRC 110
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 62.6 bits (152), Expect = 4e-12
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
G+ L T+ R SN + K + +G Y C + +N + VK AP
Sbjct: 42 NGVEL---TATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKAN-ATIEVKAAPDIT 96
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG--SERF--SSGSR 115
K G + ++C P + W+ +G ++ S RF +
Sbjct: 97 GHKRSENKNEG----QDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 116 GSMLRYTPV-TELDYGTLSCAAQNAIGT 142
+ L + D G C A N+IG+
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGS 179
Score = 42.1 bits (99), Expect = 4e-05
Identities = 12/84 (14%), Positives = 18/84 (21%), Gaps = 11/84 (13%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
I V + C + + W N G L + S+ R
Sbjct: 11 EVIIRDSL----LPVTLQCNLTSSSHTLMYSYWTKN--GVELTATRKNASNME----YRI 60
Query: 122 TPVTELDYGTLSCAAQNAIGTQVT 145
D G C +
Sbjct: 61 NKPRAEDSGEYHCVYHFVSAPKAN 84
Score = 31.4 bits (71), Expect = 0.16
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 5 IPLAHNTSARIILSNQ----SLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVK 56
N+S R + N+ L + + G Y+C+A N+ G A+ + LRV+
Sbjct: 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVS-TVLRVR 189
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 63.9 bits (155), Expect = 5e-12
Identities = 32/207 (15%), Positives = 54/207 (26%), Gaps = 38/207 (18%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV-------- 55
G L S R+++ Q L + S + +G Y C T+ +++
Sbjct: 47 GTGL--VPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDE 104
Query: 56 -------------------KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKF 96
+ + K V +V C +P S W
Sbjct: 105 DGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAA----NTVRFRCPAAGNPTP-SISWLK 159
Query: 97 NNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK 156
N + + L V D G +C +N G+ V+
Sbjct: 160 NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 219
Query: 157 PQPPQNCSVRNETT----SSVHISCTP 179
+P + T S V C
Sbjct: 220 HRPILQAGLPANQTAVLGSDVEFHCKV 246
Score = 60.0 bits (145), Expect = 1e-10
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 26/149 (17%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK--------SDR 65
++ SLV++ V G Y C N G L V + +++
Sbjct: 174 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQ 232
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSG------------ETLDVGSERFSSG 113
++G V+ HC V +D +W + T+ + ++
Sbjct: 233 TAVLG----SDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287
Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
+L VT D G +C A N+IG
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGF 316
Score = 38.4 bits (89), Expect = 0.001
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 7 LAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
L + + L L V+ + AG Y C A N+ G + + L V A
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHS-AWLVVLPAE 329
Score = 37.3 bits (86), Expect = 0.003
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+ G ++V++ C P W + G L V SER G L+
Sbjct: 16 EQLVFGSG----DAVELSCPPPGGGPMGPTVWVKD--GTGL-VPSERVLVG--PQRLQVL 66
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
+ D G SC + + V + P + +E + + P
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCH---FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 62.8 bits (152), Expect = 1e-11
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 14/126 (11%)
Query: 27 VSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-----ICKSDRIVIVGASRSESVDIHC 81
+Y C E S+ + + +V G E++ + C
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQG----ENITLMC 203
Query: 82 AVEADPPARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQ 137
V + +F+W + V S+L D GT +C
Sbjct: 204 IVIGNEVV-NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVT 262
Query: 138 NAIGTQ 143
++
Sbjct: 263 ESVNDH 268
Score = 58.9 bits (142), Expect = 2e-10
Identities = 22/183 (12%), Positives = 48/183 (26%), Gaps = 19/183 (10%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
P A+ + L L ++ G Y C+ +++G T + +L +
Sbjct: 34 SQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTV 93
Query: 60 --ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGS 117
+ + + + + I C V DP L V +
Sbjct: 94 GFLPNDAEELFIFLTEITEITIPCRVT-DPQLV-VTLHEKKGDVALPVPYD--------- 142
Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT--SSVHI 175
+ + + C + Y L +V+ ++ +
Sbjct: 143 -HQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITL 201
Query: 176 SCT 178
C
Sbjct: 202 MCI 204
Score = 33.5 bits (76), Expect = 0.048
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRV 55
L + + +GTY C+ + + + + V
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 61.9 bits (150), Expect = 1e-11
Identities = 37/180 (20%), Positives = 57/180 (31%), Gaps = 28/180 (15%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK--------SDR 65
++ SLV++ V G Y C N G L V + +++
Sbjct: 66 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQ 124
Query: 66 IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERFSSGS 114
++G V+ HC V +D +W + V S S
Sbjct: 125 TAVLG----SDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVH 174
LR V+E D G C A N IG + + + G + V + SVH
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGV--AEKAFWLSVHGPRAAEEE-LVEADEAGSVH 236
Score = 41.1 bits (96), Expect = 2e-04
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD 64
+ + + + + ++ L L VS + G Y C A N G A L V +
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSVHGPRA-AEE 224
Query: 65 RIVIVGASRSESVDIHC 81
+V E+ +H
Sbjct: 225 ELVEAD----EAGSVHH 237
Score = 39.9 bits (93), Expect = 3e-04
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 9/129 (6%)
Query: 55 VKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
+ + K V +V C +P S W N +
Sbjct: 15 TRPERMDKKLLAVPAA----NTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRH 69
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---- 170
+ L V D G +C +N G+ V+ +P + T
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129
Query: 171 SSVHISCTP 179
S V C
Sbjct: 130 SDVEFHCKV 138
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 62.3 bits (151), Expect = 1e-11
Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 23/163 (14%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
+ ++ + + ++K+ + GTY + K S + + +
Sbjct: 145 NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK 204
Query: 59 PICKSDRIVIVGASRS----------------ESVDIHCAVEADPPARSFKWKFNNSGET 102
+ K R +V + C V W +
Sbjct: 205 KLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKD--ERE 262
Query: 103 LDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
+ E+ L T ++ D G ++ G +
Sbjct: 263 IS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 304
Score = 60.0 bits (145), Expect = 8e-11
Identities = 21/174 (12%), Positives = 44/174 (25%), Gaps = 17/174 (9%)
Query: 4 GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
+ + + + + + G Y C +T G A+S + +
Sbjct: 40 YVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLA 99
Query: 62 KSDRIVI----------VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE--- 108
S V V E + FN + + G +
Sbjct: 100 LSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN--EKEIFEGPKYKM 157
Query: 109 RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
+ + + + D GT + Q+ T + + + K Q
Sbjct: 158 HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE 211
Score = 45.0 bits (106), Expect = 1e-05
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
++ + +L++ + S++ AG Y+ + +G+ S +LKL +
Sbjct: 259 DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDE 311
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 62.9 bits (152), Expect = 2e-11
Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 16/227 (7%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESV 77
+ ++ + ++ G + G + RI V + +
Sbjct: 133 NFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL----------RIQNVEVNAGQFA 182
Query: 78 DIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA 136
C+ A + + + + SS + T+ D G C
Sbjct: 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI 242
Query: 137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPG-YDGGLP-QTFTLELY 194
+ G ++ ++V+ P P + + + + I +G P +E
Sbjct: 243 RTEGGVGISN-YAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYC 301
Query: 195 SASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+AS + +D+ ++ + L D + V+++ G P
Sbjct: 302 TASGSW--NDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSP 346
Score = 49.0 bits (116), Expect = 7e-07
Identities = 37/251 (14%), Positives = 81/251 (32%), Gaps = 28/251 (11%)
Query: 6 PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR 65
PL S + +++ AG Y+C G SN +L VK P+ +
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268
Query: 66 IVIVGASRSESVDIHC-AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPV 124
+ + + ++ ++ D P + + ++ + + ++ Y +
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS-------WNDRQPVDSTSYK-I 320
Query: 125 TEL----DYGTLSCAAQNAI----GTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
L +Y +S G+ + A + P+ V + + I
Sbjct: 321 GHLDPDTEY-EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIR 379
Query: 177 -CTPGYDGGLPQTFTLELY-------SASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRV 228
GY+ ++ L ++ + T P T+ +L T + V
Sbjct: 380 WEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNL-SPYT-NVSV 437
Query: 229 VISGVNAKGRS 239
+ +N +GR
Sbjct: 438 KLILMNPEGRK 448
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 60.7 bits (147), Expect = 2e-11
Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 23/164 (14%)
Query: 4 GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATS------NQLKL 53
+ ++ + + ++K+ + GTY + K S + K
Sbjct: 41 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 100
Query: 54 RVKYAPICKSDRIVIVG----------ASRSESVDIHCAVEADPPARSFKWKFNNSGETL 103
K A + + I G + +V + C V W + +
Sbjct: 101 LQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKD--EREI 158
Query: 104 DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147
E+ L T ++ D G ++ G +
Sbjct: 159 S-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 201
Score = 42.2 bits (99), Expect = 4e-05
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
++ + +L++ + S++ AG Y+ + +G+ S +LKL +
Sbjct: 154 DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDE 206
Score = 34.1 bits (78), Expect = 0.022
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 81 CAVEADPPARSFKWKFNNSGETLDVGSER---FSSGSRGSMLRYTPVTELDYGTLSCAAQ 137
A + A + FN + + G + + + + + D GT + Q
Sbjct: 25 QAEKLSGNA-KVNYIFN--EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 81
Query: 138 NAIGTQVTPCLYQVVLAGKPQPP 160
+ T + + + K Q
Sbjct: 82 DGKATNHSTVVLVGDVFKKLQKE 104
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 60.6 bits (146), Expect = 3e-11
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 20/158 (12%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK------SDRIVIVGA 71
S + + AG C A S + V I + VG
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG- 120
Query: 72 SRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRYT-------P 123
E + ++C + F W++ +S R GS ++
Sbjct: 121 ---EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
VT D G +CAA + + T+ +V P +
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVH--EDPIEGR 213
Score = 36.7 bits (84), Expect = 0.003
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
+ + + +L + V+R G Y C+A + ++ +RV PI
Sbjct: 162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEDPI 210
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 59.9 bits (145), Expect = 4e-11
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 22/150 (14%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK-- 62
+ + + + +N +L + V G Y C + + + + P
Sbjct: 51 VFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK 110
Query: 63 ----------SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS 112
D ++G ++V + C +P +W+ E + + S+
Sbjct: 111 PYPADIVVQFKDVYALMG----QNVTLECFALGNPVPD-IRWRKV--LEPMP-STAEIST 162
Query: 113 GSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
G++L+ + D G C A+N G
Sbjct: 163 S--GAVLKIFNIQLEDEGIYECEAENIRGK 190
Score = 47.2 bits (112), Expect = 1e-06
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 15/125 (12%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
+ V G + + + C P S++W N + + RF S + G+ L
Sbjct: 16 PEVRVKEG----KGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN-LYI 70
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL-----AGKPQPPQNCSVRNETT----SS 172
V D G SC + T+ + ++ KP P + +
Sbjct: 71 ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN 130
Query: 173 VHISC 177
V + C
Sbjct: 131 VTLEC 135
Score = 41.4 bits (97), Expect = 8e-05
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATS 48
++A I S L + + + G Y+C A N +G+
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKH 193
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 58.0 bits (140), Expect = 1e-10
Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 18/128 (14%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSE 75
S + + +G Y+C + S+ ++L V + + +
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEE----D 104
Query: 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
+ + C + + N S T D G+ C
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGK---------DRKYFHHNSDFHIPKATLKDSGSYFCR 155
Query: 136 AQNAIGTQ 143
Sbjct: 156 GLVGSKNV 163
Score = 46.4 bits (110), Expect = 1e-06
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
N + K + + +G+Y C + +S + + + A
Sbjct: 135 HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA 175
Score = 29.5 bits (66), Expect = 0.72
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 11/64 (17%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+SV + C P S +W N S S+ S T D G C
Sbjct: 23 DSVTLKCQGAYSPEDNSTQWFHNES-----------LISSQASSYFIDAATVNDSGEYRC 71
Query: 135 AAQN 138
Sbjct: 72 QTNL 75
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 58.6 bits (141), Expect = 1e-10
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 13/147 (8%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV---KYAP 59
I N + +L + VS + +Y C+A + +++ + P
Sbjct: 37 TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDP 95
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPAR--SFKWKFNN---SGETLDVGSERFSSGS 114
+ G + + + C+V P + + ++R S +
Sbjct: 96 EIHLSGPLEAG----KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLET 151
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIG 141
+ + +TPV E L C A+ I
Sbjct: 152 KSLEVTFTPVIEDIGKVLVCRAKLHID 178
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 59.9 bits (144), Expect = 2e-10
Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 21/181 (11%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASR 73
N V + + Q C + G++T+ L V + P + VG
Sbjct: 46 GNNRKVYELSNVQEDSQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVG--- 101
Query: 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
+++ + C VE P + + L E + S
Sbjct: 102 -KNLTLRCQVEGGAPRANLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFS 158
Query: 134 CAAQNAIGTQ--------VTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGL 185
C + + Q P Q + P E + + C+ DG
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS--LDGLF 216
Query: 186 P 186
P
Sbjct: 217 P 217
Score = 57.2 bits (137), Expect = 1e-09
Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 27/149 (18%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT---SNQLKLRVKYAPI-----CK 62
A+ + L+L+ + ++ CSA + +LRV Y P C
Sbjct: 318 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP 377
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+ C +P K + + +
Sbjct: 378 GNWTWPEN----SQQTPMCQAWGNPLP-ELKCLKDGTFPL--------------PIGESV 418
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
VT GT C A++ G V
Sbjct: 419 TVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 48.3 bits (114), Expect = 9e-07
Identities = 21/184 (11%), Positives = 43/184 (23%), Gaps = 11/184 (5%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-------TSNQLKLRV 55
G L A + + + + C TS +L+
Sbjct: 126 GEKEL-KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT 184
Query: 56 KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
P + + C+++ P + + L+ +
Sbjct: 185 FVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 244
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCS-VRNETTSSVH 174
+ L+CA +Q L V + P P + + V
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQSQ--ETLQTVTIYSFPAPNVILTKPEVSEGTEVT 302
Query: 175 ISCT 178
+ C
Sbjct: 303 VKCE 306
Score = 43.7 bits (102), Expect = 3e-05
Identities = 23/184 (12%), Positives = 41/184 (22%), Gaps = 27/184 (14%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
T S ++ V + C+ I + + + P
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET-LQTVTIYSFPAPN 287
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
+ + V G V + C G + L
Sbjct: 288 VILTKPEVSEG----TEVTVKCEAHPRAKVTLNGVPAQPLGP--------------RAQL 329
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA--GKPQPPQNCSVRNETT---SSVH 174
E + + SC+A + Q+ L P+ + N T S
Sbjct: 330 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 389
Query: 175 ISCT 178
C
Sbjct: 390 PMCQ 393
Score = 35.6 bits (81), Expect = 0.014
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57
V+R GTY C A +T+GE T + + V
Sbjct: 414 IGESVTVTRDLEGTYLCRARSTQGEVTRE-VTVNVLS 449
Score = 32.1 bits (72), Expect = 0.18
Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 16/133 (12%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
S I+ G SV + C+ D P ET E G+ + +
Sbjct: 7 SKVILPRG----GSVLVTCSTSCDQPML-LGI------ETPLPKKELLLPGNNRKVYELS 55
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYD 182
V + C + G V + ++ + C +
Sbjct: 56 NVQ--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV--E 111
Query: 183 GGLP-QTFTLELY 194
GG P T+ L
Sbjct: 112 GGAPRANLTVVLL 124
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 55.7 bits (134), Expect = 8e-10
Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 20/142 (14%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ-LKLRVKYAPIC 61
+ N +L ++ + YK S +TKG+ + L+++
Sbjct: 49 KEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-- 106
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
+I + + C V + G+ L + +
Sbjct: 107 SKPKISWTC----INTTLTCEVMNGTDP-ELNLYQD--GKHLKLSQRVITH--------- 150
Query: 122 TPVTELDYGTLSCAAQNAIGTQ 143
T C A N + +
Sbjct: 151 -KWTTSLSAKFKCTAGNKVSKE 171
Score = 31.4 bits (71), Expect = 0.19
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATS 48
+ +Q ++ K + + +KC+A N + +S
Sbjct: 141 LKLSQRVITHKWTTSLSAKFKCTAGNKVSKESS 173
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 55.0 bits (132), Expect = 1e-09
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSE 75
IL+N L ++ ++R +GTY + +T G N+ L ++ + I
Sbjct: 57 ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNK-ALDLRILEMVSKPMIYW----ECS 111
Query: 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
+ + C V K + C
Sbjct: 112 NATLTCEVLEGTDV-ELKLYQGK------------EHLRSLRQKTMSYQWTNLRAPFKCK 158
Query: 136 AQNAIGTQ 143
A N + +
Sbjct: 159 AVNRVSQE 166
Score = 35.7 bits (82), Expect = 0.006
Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 14/123 (11%)
Query: 64 DRIVIVGASRSESVDIHC-AVEADPPARSFKWKFNNS-------GETLDVGSERFSSGSR 115
D + GA ++++ + +W+ ++ + S F +
Sbjct: 2 DSGTVWGA-LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60
Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHI 175
G L+ +T D GT + + GT++ + + P + S+ +
Sbjct: 61 GD-LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKP----MIYWECSNATL 115
Query: 176 SCT 178
+C
Sbjct: 116 TCE 118
Score = 28.8 bits (64), Expect = 1.4
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATS 48
+ S + + +KC A+N + +
Sbjct: 134 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 168
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 54.6 bits (131), Expect = 2e-09
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 25/143 (17%)
Query: 3 GGIPLAHNTSARIIL---SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G L +R L N L+++ + + + TY C + K E L
Sbjct: 48 GPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---- 103
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
SD ++ G +S+ + S + + S R + G L
Sbjct: 104 --NSDTHLLQG----QSLTLTLESPPGSSP-SVQCR-----------SPRGKNIQGGKTL 145
Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
+ + D GT +C
Sbjct: 146 SVSQLELQDSGTWTCTVLQNQKK 168
Score = 39.2 bits (91), Expect = 4e-04
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
+ I ++L + ++ Q +GT+ C+ + + +
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 55.9 bits (134), Expect = 3e-09
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 14/146 (9%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
+ + L + L L V+ C A N G A + +++ V +
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS-VQVNVSFPA--- 251
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN------NSGETLDVGSERFSSGSRG 116
+ + A I +V+ P S +W FN S + + R
Sbjct: 252 --SVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRH 308
Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGT 142
LR T ++ G + A N G
Sbjct: 309 GCLRLNQPTHVNNGNYTLLAANPFGQ 334
Score = 43.2 bits (101), Expect = 4e-05
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+ V + C VE W + + ++L+ ++C
Sbjct: 174 DDVLLRCQVEGRGLE-QAGWILTE--LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTC 230
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT 188
A+N +G V + P SV+ T +H C P G P
Sbjct: 231 WAENDVGRAEV----SVQV--NVSFP--ASVQLHTAVEMHHWCIPFSVDGQPAP 276
Score = 38.2 bits (88), Expect = 0.002
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 8 AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+A + + L L + + + G Y A N G+A+++ + P
Sbjct: 297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNP 347
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 54.2 bits (130), Expect = 4e-09
Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 16/155 (10%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
+ L N +L + V Q AG Y+C + G A ++ ++V + RI++V +
Sbjct: 75 LSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKINQRILVVD-PVT 131
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-----SMLRYTPVTELDY 129
++ C E P A W ++ + S S LR +
Sbjct: 132 SEHELTCQAEGYPKAEV-IWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR---INTTTN 187
Query: 130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQN 162
C + + ++V+ P PP
Sbjct: 188 EIFYCTFRRLDPEE--NHTAELVIPELPLAHPPNE 220
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 53.7 bits (128), Expect = 1e-08
Identities = 19/189 (10%), Positives = 45/189 (23%), Gaps = 29/189 (15%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC- 61
P +NT+ +L + + ++AG+YK + +T + ++ A +
Sbjct: 43 DDQPHENNTA--------TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIV 94
Query: 62 ----KSDRIVIVGASRSESVDIHCAVEADPPAR---SFKWKFNNSGETLDVGSERFSSGS 114
V + + P + W
Sbjct: 95 NITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGE------------DVID 142
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA-GKPQPPQNCSVRNETTSSV 173
+ T G + +++LA S + +
Sbjct: 143 TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEI 202
Query: 174 HISCTPGYD 182
++ D
Sbjct: 203 SLNYVVSED 211
Score = 47.5 bits (112), Expect = 1e-06
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 18/146 (12%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
+I + Q + +Q+ + G Y ++ ++ + D + +
Sbjct: 140 VIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALG 199
Query: 75 ESVDIHCAVEAD---------PPARSFKWKFNNSGETLDV--------GSERFSSGSRGS 117
+ ++ V D + W G+ E FS G
Sbjct: 200 NEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH 259
Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQ 143
L T D C A+ +
Sbjct: 260 -LFKESATYDDTAKFWCVAKLYQQIE 284
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 54.2 bits (129), Expect = 1e-08
Identities = 26/229 (11%), Positives = 58/229 (25%), Gaps = 21/229 (9%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK--YAPICKSDRIVIVGASRSE 75
+ S+V+ + ++ AG Y C A + + ++ +V
Sbjct: 288 GSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS 347
Query: 76 SVDIHCAVEADPPARSFKWKFN-------------NSGETLDVGSERFSSGSRGSMLRYT 122
SV + C W + G R S +T
Sbjct: 348 SVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFT 407
Query: 123 P----VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
+T D G C + T + + G+P +V ++ + C
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIE--GEPNLKVPGNVTAVLGETLKVPCH 465
Query: 179 PGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMR 227
+ + + + L ++ ++ +
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLN 514
Score = 50.8 bits (120), Expect = 2e-07
Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
+++L +++ + AG Y C T+ ++K+ + + A E++ +
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVT---AVLGETLKVP 463
Query: 81 CAVEADPPARSFKW-KFNNSGETLDVGSERFSS--------GSRGSMLRYTPVTELDYGT 131
C + W K+NN+G + S SR L VT D G
Sbjct: 464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 132 LSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY 181
C + T +Y V K ++ S+ + G+
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGF 573
Score = 48.5 bits (114), Expect = 1e-06
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 27/184 (14%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
S+V+ ++ AG Y C A + N + +V SV H
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKN-----ADLQVLKPEPELVY--EDLRGSVTFH 238
Query: 81 CAVEADPPARSFKWKFNNSGETLDV-----GSERFSSGSRGSM----------LRYTPVT 125
CA+ + + +SGE DV G + R + + T +
Sbjct: 239 CALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR 298
Query: 126 ELDYGTLSCAAQNAIGT---QVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYD 182
+ D G C A + V P V+ SSV + C Y+
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCP--YN 356
Query: 183 GGLP 186
Sbjct: 357 RKES 360
Score = 43.8 bits (102), Expect = 3e-05
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 29/232 (12%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
+ + ++S+ +G YKC + + + + ++ V R+ ++ +
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI--N 133
Query: 81 CAVEADPPARSFKW----------KFNNSGETLDVGSERFS-----SGSRGSMLRYTPVT 125
C + + + ++SG + R +G + +
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 126 ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGL 185
D G C A + + QV+ P+ V + SV C G +
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVL------KPEPELVYEDLRGSVTFHCALGPEVAN 247
Query: 186 PQTFTLELYSASDLNLLVNLTNLDTPA----FTLEDLGLDGTVLMRVVISGV 233
F S + +++VN PA L DG+ VVI+G+
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF--SVVITGL 297
Score = 35.0 bits (79), Expect = 0.024
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
SL L V+R G Y C + + + V+ + V +++++
Sbjct: 510 SLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK---AAGSRDVSLAKADAAPDE 566
Query: 81 CAVEADPPARSFKWKFN 97
+++ K +
Sbjct: 567 KVLDSGFREIENKAIQD 583
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 50.3 bits (120), Expect = 2e-08
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 47 TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG 106
+ + L V PI S + E I C + + PP W + L+ G
Sbjct: 3 SGSSGTLTVNGPPIISSTQTQHA--LHGEKGQIKCFIRSTPPPDRIAWSWK--ENVLESG 58
Query: 107 S-------ERFSSGSRGSMLRYTPVTELDYGTL-SCAAQNAIGT 142
+ + S L + + D+ T+ +C A N+ G+
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS 102
Score = 32.2 bits (73), Expect = 0.049
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 3 GGIPLAHNTSARIILSNQ--------SLVLQKVSRQ-SAGTYKCSAINTKGEATSNQLKL 53
L TS R + +L + + R Y C+A N+ G T ++L
Sbjct: 51 KENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEI-IRL 109
Query: 54 RVKYAPICKSD 64
+ + + +
Sbjct: 110 KEQGSEMSGPS 120
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.2 bits (124), Expect = 4e-08
Identities = 23/118 (19%), Positives = 31/118 (26%), Gaps = 9/118 (7%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+SV + C + W GS G L V D G SC
Sbjct: 22 DSVTLTCPGVEPEDNATVHWVLRKP----AAGSHPSRWAGMGRRLLLRSVQLHDSGNYSC 77
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLE 192
V +++ P+ PQ R S+V P L L
Sbjct: 78 YRAGRPAGTV-----HLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLL 130
Score = 43.7 bits (102), Expect = 2e-05
Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 13/216 (6%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGA 71
+R + L+L+ V +G Y C + + L V P
Sbjct: 52 PSRWAGMGRRLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVDVPPEEPQLSCFRKSP 107
Query: 72 SRSESVDIHCAVEADPPAR---SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
+ + + + N+ E + + S P +
Sbjct: 108 LSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSS 167
Query: 129 YGTLSCAAQNAIGTQVTPCLY-QVVLAGKPQPPQNCSVRNETTSSVHISCT-----PGYD 182
+ +S +++G++ + Q +P PP N +V + +S T
Sbjct: 168 FYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS 227
Query: 183 GGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDL 218
F L + + + D
Sbjct: 228 SFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDA 263
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 51.0 bits (122), Expect = 6e-08
Identities = 23/174 (13%), Positives = 55/174 (31%), Gaps = 30/174 (17%)
Query: 4 GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
G + ++ + ++ + L + + + G Y + K + L +
Sbjct: 41 GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEA 99
Query: 62 KSDRIVIVGASRSE--------------------SVDIHCAVEADPPARSFKWKFNNSGE 101
++ + A+ +E ++++ C V DPP W N +
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKN--EK 156
Query: 102 TLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
L ++ + R + V+ D G +N G++ + V
Sbjct: 157 ALA-QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 39.9 bits (93), Expect = 3e-04
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 14/134 (10%)
Query: 64 DRIVIVG-----ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSM 118
I + S +E + ++ V W N G + S+R +G G
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHN--GSAIRY-SDRVKTGVTGEQ 58
Query: 119 --LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
L+ T D G + L+G+ + +++
Sbjct: 59 IWLQINEPTPNDKGKYVMELFDGKTGHQKTV----DLSGQAYDEAYAEFQRLKQAAIAEK 114
Query: 177 CTPGYDGGLPQTFT 190
GGLP T
Sbjct: 115 NRARVLGGLPDVVT 128
Score = 37.2 bits (86), Expect = 0.002
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ VS +G Y N G TS + V + P
Sbjct: 175 YFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSV-FIP 211
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 51.4 bits (122), Expect = 6e-08
Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 37/184 (20%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
++ SL+LQ V + G Y C + + + P D V VG
Sbjct: 78 DTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKK-PVELWVLPEEPRDLRVRVG--- 133
Query: 74 SESVDIHCAVEADPPAR--SFKWKFNNSGETLDVGSERFSSGSRGSM------------- 118
++ + C++++ R W F++ T + + S R
Sbjct: 134 -DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192
Query: 119 ----------LRYTPVTELDYGTLSCAAQNAIGT-------QVTPCLYQVVLAGKPQPPQ 161
++ V E D G +C+ V +Q ++ P +
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDK 252
Query: 162 NCSV 165
Sbjct: 253 GQQG 256
Score = 36.0 bits (82), Expect = 0.008
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ + I ++ S+ LQ V G Y CS K E+ + L V
Sbjct: 191 DLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKT-IVLHVVQDE 239
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 48.9 bits (117), Expect = 7e-08
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYS-ASDLNLLVNLTN 207
L+ P PP V + T +SV +S PG G LP + +E +S + + +
Sbjct: 9 NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANH 68
Query: 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ T +T+ L + L V +N +G S P
Sbjct: 69 VKTTLYTVRGLRPNTIYLFMVR--AINPQGLSDP 100
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 51.8 bits (123), Expect = 7e-08
Identities = 25/178 (14%), Positives = 40/178 (22%), Gaps = 20/178 (11%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC------- 61
RI L + G Y C NT + L V C
Sbjct: 68 RLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMKL 126
Query: 62 -KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
+ G R ++ + + W + + G L
Sbjct: 127 PVHKLYIEYGIQRITCPNVDGYFPSSVKP-TITWYMG--CYKIQNFNNVIPEGMN---LS 180
Query: 121 YTPVTELDYGTLSCAAQ---NAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNETTSSV 173
+ + G +C N +T L V+ PP S +
Sbjct: 181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEK 238
Score = 31.4 bits (70), Expect = 0.29
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 19 NQSLVLQKVSRQ-SAGTYKCSAINTKGEATSN-QLKLRV 55
Q L ++KV+ + +Y C A + KGE ++K +V
Sbjct: 295 TQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 50.4 bits (120), Expect = 7e-08
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 17/152 (11%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
+ L + V + +G Y+C I L VK I+ +
Sbjct: 62 LPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPGT 118
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-----SMLRYTPVTELDY 129
V + C P A W+ N S + G S+LR +
Sbjct: 119 GEVQLTCQARGYPLA-EVSWQ-NVSVPA----NTSHIRTPEGLYQVTSVLR---LKPQPS 169
Query: 130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
SC NA ++T + + +P+ P+
Sbjct: 170 RNFSCMFWNAHMKELTSAIIDPLSRMEPKVPR 201
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 50.1 bits (119), Expect = 2e-07
Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 27/141 (19%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINT---KGEATSNQLKLRVKYAPI-----CK 62
A+ + L+L+ + ++ CSA + + +LRV Y P C
Sbjct: 133 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP 192
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+ C +P K + G+ G
Sbjct: 193 GNWTWPEN----SQQTPMCQAWGNPLP-ELKCLKD--------GTFPLPIGES------V 233
Query: 123 PVTELDYGTLSCAAQNAIGTQ 143
VT GT C A++ G
Sbjct: 234 TVTRDLEGTYLCRARSTQGEV 254
Score = 40.0 bits (93), Expect = 4e-04
Identities = 23/176 (13%), Positives = 41/176 (23%), Gaps = 27/176 (15%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIV 67
T S ++ V + C+ I + + + P + + V
Sbjct: 52 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET-LQTVTIYSFPAPNVILTKPEV 110
Query: 68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
G V + C G + L E
Sbjct: 111 SEG----TEVTVKCEAHPRAKVTLNGVPAQPLGPR--------------AQLLLKATPED 152
Query: 128 DYGTLSCAAQNAIGTQVTPCLYQVVLA--GKPQPPQNCSVRNETT---SSVHISCT 178
+ + SC+A + Q+ L P+ + N T S C
Sbjct: 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ 208
Score = 35.8 bits (82), Expect = 0.009
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57
V+R GTY C A +T+GE T + + V
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTRE-VTVNVLS 264
Score = 33.5 bits (76), Expect = 0.046
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 7/107 (6%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+ C+++ P + + L+ + + L+C
Sbjct: 19 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTC 78
Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQP---PQNCSVRNETTSSVHISCT 178
A +Q T L V + P P V + V + C
Sbjct: 79 AVILGNQSQET--LQTVTIYSFPAPNVILTKPEVSEG--TEVTVKCE 121
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 49.1 bits (116), Expect = 4e-07
Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 19/173 (10%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASR 73
N V + + Q C + ++ + L V + P + VG
Sbjct: 46 GNNRKVYELSNVQEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVG--- 101
Query: 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
+++ + C VE P + + L E + S
Sbjct: 102 -KNLTLRCQVEGGAPRANLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFS 158
Query: 134 CAAQNAIGTQVTPCLYQV-------VLAGKPQPPQNCSVRN-ETTSSVHISCT 178
C + + Q PPQ S R E + + C+
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS 211
Score = 42.5 bits (99), Expect = 7e-05
Identities = 22/158 (13%), Positives = 38/158 (24%), Gaps = 9/158 (5%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG-------EATSNQLKLRVKYAPIC 61
A + + + + C E TS +L+ P
Sbjct: 131 KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
+ + C+++ P + + L+ S
Sbjct: 191 PPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN--PTVTYGNDSFSAKAS 248
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP 159
VT D GT +G Q L V + P P
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 286
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 45.9 bits (109), Expect = 8e-07
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS---SGSRGSML 119
+ V+ G +SV + C + A PP + WK N E + ++R S + L
Sbjct: 23 QSKKVLEG----DSVKLECQISAIPPPK-LFWKRN--NEMVQFNTDRISLYQDNTGRVTL 75
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPC 147
V + D G + +A N G
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCNT 103
Score = 42.8 bits (101), Expect = 1e-05
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
+ NT + + +L+++ V+++ AG Y SA+N G T N +L V
Sbjct: 52 NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTAR 110
Query: 59 P 59
P
Sbjct: 111 P 111
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 47.4 bits (112), Expect = 1e-06
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 3/130 (2%)
Query: 11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVG 70
L + SL + + + G+Y C + + S + LRV A + + V
Sbjct: 69 ARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV-LAKPQNTAEVQKVQ 127
Query: 71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG--SRGSMLRYTPVTELD 128
+ C P W + G F SG + S+ P +++D
Sbjct: 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVD 187
Query: 129 YGTLSCAAQN 138
++C ++
Sbjct: 188 GKQVTCKVEH 197
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 44.7 bits (106), Expect = 1e-06
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G+ LA S R ++ + + +Q +G Y C + G T+ + V A
Sbjct: 40 GVQLA--ESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTY-FSVNVSDAL 92
Score = 35.8 bits (83), Expect = 0.002
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+V G + + + C + D S W + G L S R G +
Sbjct: 11 ESFLVHPG----DLLQLRCRLRDDVQ--SINWLRD--GVQLAE-SNRTRI--TGEEVEVQ 59
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP 160
D G +C + G+ T V A P
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 46.0 bits (109), Expect = 1e-06
Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 19/152 (12%)
Query: 28 SRQSAGTYKCSAINTKGEATSNQL-----KLRVKYAP--ICK-SDRIVIVGASRSESVDI 79
R+++G+ S IN + + + P D V+ G +
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEG----SAARF 61
Query: 80 HCAVEADPPARSFKWKFNNSGETLDVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAA 136
C VE P W + + S F L + V D +C A
Sbjct: 62 DCKVEGYPDP-EVMWFKD--DNPVK-ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117
Query: 137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNE 168
N++G V GK + +E
Sbjct: 118 VNSLGEATCTAELLVETMGKEGEGEGEGEEDE 149
Score = 39.1 bits (91), Expect = 3e-04
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 4 GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
P+ + +I + SL + +V Y C A+N+ GEAT +L V+
Sbjct: 79 DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT-AELLVETMG 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-06
Identities = 66/321 (20%), Positives = 93/321 (28%), Gaps = 124/321 (38%)
Query: 24 LQKVSRQSAGTYKCSAINTKGEATS------NQLKLRVKYAPICKSD-------RIVIVG 70
L+ S Y S S QL Y K R + G
Sbjct: 219 LENPSNTPDKDYLLSI------PISCPLIGVIQL---AHYVVTAKLLGFTPGELRSYLKG 269
Query: 71 AS-RSESVDIHCAVEADPPARSFKWK--FNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
A+ S+ + V A A + W+ F + + + V F G R P T L
Sbjct: 270 ATGHSQGL-----VTAVAIAETDSWESFFVSVRKAITV---LFFIGVRC--YEAYPNTSL 319
Query: 128 DYGTLSCAAQNAIGT-------------QVT----------PC-------LY----QVVL 153
L + +N G QV P L +V+
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 154 AGKPQPPQ-----NCSVRNETTSSVHISCTPGYD---------------GGLPQT--F-T 190
+G PPQ N ++R G D LP F +
Sbjct: 380 SG---PPQSLYGLNLTLRK-------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 191 LELYSASDL--------NLLVNLTNLDTPAF---TLEDL-GLDGTVLMRVV--ISGVNAK 236
L ASDL N+ N ++ P + DL L G++ R+V I
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII----- 484
Query: 237 GRSLPVIWDDFSMSGA-HYAD 256
LPV W+ + A H D
Sbjct: 485 --RLPVKWETTTQFKATHILD 503
Score = 29.2 bits (65), Expect = 1.5
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 119 LRYTPVTELDYGTLSC-----AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSV 173
R P+T L +G+L A I +Q L + P+P + + +E T+
Sbjct: 6 TR--PLT-LSHGSLEHVLLVPTASFFIASQ----LQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 174 H 174
Sbjct: 59 E 59
Score = 29.2 bits (65), Expect = 1.9
Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 73/218 (33%)
Query: 78 DIHCAV------EADPPARSFKW----------------KFNNSG--ETLDVGSER---- 109
DIH ++ + K +NS + G+ +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 110 FSSGSRGSMLRYTPVTEL-----DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCS 164
F G +G+ Y EL Y L ++ L + L + Q +
Sbjct: 160 F--GGQGNTDDY--FEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGLN 214
Query: 165 VRN--ETTSSVHISCTPGYDGGLPQTFTLELYSASD-----LNLLVNLTNLDTPAFTLED 217
+ E S+ TP D Y S L ++ L + T +
Sbjct: 215 ILEWLENPSN-----TPDKD-----------YLLSIPISCPLIGVIQLAHY---VVTAKL 255
Query: 218 LGLDGTVLMRVVISGVNAKGRSLPV---I-----WDDF 247
LG +R + G + L I W+ F
Sbjct: 256 LGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 45.1 bits (107), Expect = 2e-06
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNL 208
+ P PP + + ++ SV +S TPG D P F +E A L +
Sbjct: 10 PAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTE 69
Query: 209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ T L L V + VN+ G+SLP
Sbjct: 70 VSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLP 102
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 46.8 bits (110), Expect = 2e-06
Identities = 29/134 (21%), Positives = 40/134 (29%), Gaps = 14/134 (10%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAIN---TKGEATSNQLKLRVKY---APICKSDRIVIVGA 71
N SL + + G+Y K N+L L V P + G
Sbjct: 80 KNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGR 139
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
S + + EA PP +F W N +R S L TP E
Sbjct: 140 PTRLSCSLPGSCEAGPPL-TFSWTGNALSPLD-------PETTRSSELTLTPRPEDHGTN 191
Query: 132 LSCAAQNAIGTQVT 145
L+C + T
Sbjct: 192 LTCQMKRQGAQVTT 205
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 45.0 bits (107), Expect = 2e-06
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLN---LLVNLTNLDT 210
P+ P ++ + +SV+++ P +GG P Q+F +E + L +
Sbjct: 16 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75
Query: 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ + L + RV +N G S P
Sbjct: 76 LSVEITGLEKGISYKFRVR--ALNMLGESEP 104
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 46.4 bits (109), Expect = 3e-06
Identities = 25/153 (16%), Positives = 39/153 (25%), Gaps = 28/153 (18%)
Query: 17 LSNQSLVLQKVSRQSAGTYKCSAINT--KGEATSNQLKLRVKYAPICKSDRIVI-----V 69
L+ +L L V Q G Y C + E + + +K S+ + + V
Sbjct: 87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVV 146
Query: 70 GASRSESVDIHCAVEADPPARSFKWKFNNS-------------GETLDVGSERFSSGSRG 116
+ + C A + W + G FSS G
Sbjct: 147 QVDEGNDITMTCPCTDCANA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205
Query: 117 SM-------LRYTPVTELDYGTLSCAAQNAIGT 142
L D G + C G
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQGE 238
Score = 34.9 bits (79), Expect = 0.015
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
++LV++ AG C +GE ++
Sbjct: 209 FSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 44.4 bits (105), Expect = 3e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G+ ++ S L N L ++ G Y C A GEAT + + V+
Sbjct: 46 GVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWS-AYIEVQEFG 100
Score = 43.2 bits (102), Expect = 7e-06
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
++ V V + + C P + W+ + G + R G L+
Sbjct: 16 VNQTVAVD----GTFVLSCVATGSPVP-TILWRKD--GVLVSTQDSRIKQLENGV-LQIR 67
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP-QPPQNCSV 165
D G +C A G +V G P QPP+
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDP 111
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 43.9 bits (104), Expect = 4e-06
Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNL 208
L+ +P P + N T +S+ + D G F LE
Sbjct: 11 FTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMG 70
Query: 209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
F + L R+ N G S
Sbjct: 71 SQKQFKITKLSPAMGCKFRLS--ARNDYGTSGF 101
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 43.9 bits (104), Expect = 4e-06
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
L ++ + N++L +++V ++ G Y C A + G A + ++ A
Sbjct: 47 DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQ 102
Score = 43.5 bits (103), Expect = 5e-06
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 50 QLKLRVKYAP-ICK--SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG 106
QL + + AP I ++ +G ES+++ C +PP + W + ETL
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIG----ESIEVSCTASGNPPPQ-IMWFKD--NETLVE- 53
Query: 107 SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP 160
L V + D G +C A + +G + + G +
Sbjct: 54 DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII--EGAQEKT 105
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 45.4 bits (107), Expect = 4e-06
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 11/131 (8%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSE 75
+ SL L + + G+Y+ S+ ++ + + + +
Sbjct: 66 FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC 125
Query: 76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
+ + C+VE SF+W+ SS + + + P + +C
Sbjct: 126 ELHLTCSVEDADDNVSFRWEALG---------NTLSSQPNLT-VSWDPRISSE-QDYTCI 174
Query: 136 AQNAIGTQVTP 146
A+NA+
Sbjct: 175 AENAVSNLSFS 185
Score = 31.5 bits (71), Expect = 0.17
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 15/127 (11%)
Query: 67 VIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY----- 121
++V ESV + A W FN + V E S + +
Sbjct: 6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLN 65
Query: 122 ---------TPVTELDYGTLSCAAQNAIGTQVTP-CLYQVVLAGKPQPPQNCSVRNETTS 171
+ + D G+ +++ L + Q + + T
Sbjct: 66 FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC 125
Query: 172 SVHISCT 178
+H++C+
Sbjct: 126 ELHLTCS 132
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 42.9 bits (101), Expect = 6e-06
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
G+ L S R ++ + + ++ +G Y C + G T+
Sbjct: 46 GVQLV--ESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTY 89
Score = 34.8 bits (80), Expect = 0.005
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
+ + + C + D S W + G L V S R G + D G +C
Sbjct: 25 DLLQLRCRLRDDVQ--SINWLRD--GVQL-VESNRTRI--TGEEVEVRDSIPADSGLYAC 77
Query: 135 AAQNAIGTQVTPCLYQV 151
+ G+ T V
Sbjct: 78 VTSSPSGSDTTYFSVNV 94
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 42.8 bits (101), Expect = 8e-06
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+++ + V + + C DP W G T R + +G+ L+
Sbjct: 16 ANQTLAVD----GTALLKCKATGDPLP-VISWLKE--GFTFPGRDPRATIQEQGT-LQIK 67
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG 155
+ D GT +C A ++ G + V +G
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
Score = 41.2 bits (97), Expect = 2e-05
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G I +L ++ + GTY C A ++ GE + + L V
Sbjct: 46 GFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS-AVLDVT 97
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 42.7 bits (101), Expect = 9e-06
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 4 GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G + + ++I+S + SL+ + V AG Y C A N GEAT ++L V
Sbjct: 43 GRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT-VQLDVL 97
Score = 34.2 bits (79), Expect = 0.008
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 11/88 (12%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---SSGSRGSML 119
+ + G + V P W N G T+ + S L
Sbjct: 13 ENMSIDEG----RFCRMDFKVSGLPAP-DVSWYLN--GRTVQ-SDDLHKMIVSEKGLHSL 64
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPC 147
+ V D G +C A+N G
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTV 92
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 42.7 bits (101), Expect = 9e-06
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQT-FTLELYSASDLNLLVNLTN 207
+ + +P PPQ + + +V ++ P DG T +T++ + + +
Sbjct: 11 DIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEH 70
Query: 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ T+ +L + RV N G S
Sbjct: 71 YHRTSATITELVIGNEYYFRVF--SENMCGLSED 102
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 45.2 bits (107), Expect = 1e-05
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQT-FTLELYSASDLNLLVNLTN 207
V +P+PP+ + N +V +S P DGG T +T+E +
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIE-KREAMGGSWSPCAK 61
Query: 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
T+E L R++ N G+S P
Sbjct: 62 SRYTYTTIEGLRAGKQYEFRIIAE--NKHGQSKP 93
Score = 31.7 bits (72), Expect = 0.23
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATS 48
L + +V G Y A N+ G
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEE 566
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 41.9 bits (99), Expect = 1e-05
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G L ++ I + L ++ +++ GTY+C +N GE +S +L VK
Sbjct: 39 GVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS-YAELFVK 93
Score = 37.7 bits (88), Expect = 4e-04
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSM--LR 120
+ G V C +E + W F L+ SE++ + L
Sbjct: 9 MHAVGEEG----GHVKYVCKIENYDQSTQVTWYFG--VRQLE-NSEKYEITYEDGVAILY 61
Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPC 147
+T+LD GT C N G +
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYA 88
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.9 bits (103), Expect = 2e-05
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 7/138 (5%)
Query: 8 AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIV 67
I +L + V+ +G Y C + + V
Sbjct: 71 TSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH----V 126
Query: 68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--SMLRYTPVT 125
V + + + C P +W NN GE + + G ++ +
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQW-SNNKGENIPTVEAPVVADGVGLYAVAASVIMR 185
Query: 126 ELDYGTLSCAAQNAIGTQ 143
+SC ++++
Sbjct: 186 GSSGEGVSCTIRSSLLGL 203
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 43.7 bits (102), Expect = 2e-05
Identities = 21/173 (12%), Positives = 42/173 (24%), Gaps = 36/173 (20%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
G + T + + L ++ G Y+C K + ++
Sbjct: 37 DGKMIGFLTEDKKKWN-----LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKD 91
Query: 63 SDRIVIVGAS-------------------------RSESVDIHCAVEADPPARSFKWKFN 97
+ + +V + C P W+ N
Sbjct: 92 AAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY---PGSEILWQHN 148
Query: 98 NSGETLDVGSERFSSGSRGSMLRYTPVTEL-DYGTLSCAAQNAIGTQVTPCLY 149
+ + + + GS L +EL G C + + LY
Sbjct: 149 --DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY 199
Score = 37.6 bits (86), Expect = 0.002
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 4 GIPLAHNTSARIILSNQ-SLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVK 56
+ + + I S++ L L++ S +G Y C +K E + L LR +
Sbjct: 149 DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 43.3 bits (102), Expect = 2e-05
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 21/130 (16%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
+ +N +L + VS++ G Y ++ + ++ + V Y + K
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETED--QWKITMEV-YEMVSKPMIYW-----E 114
Query: 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
+ + C V K E S + +
Sbjct: 115 CSNATLTCEVLEGTDV-ELKLYQGK---------EHLRSLRQ---KTMSYQWTNLRAPFK 161
Query: 134 CAAQNAIGTQ 143
C A N + +
Sbjct: 162 CKAVNRVSQE 171
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 41.5 bits (98), Expect = 2e-05
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 4 GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G+ + + LV++ V+ + + + AIN GE +S L V+
Sbjct: 43 GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS-HAFLLVQ 97
Score = 30.3 bits (69), Expect = 0.15
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 11/88 (12%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---SSGSRGSML 119
+ V G V P +W N G ++ S+R L
Sbjct: 13 QSQTVGQG----SDAHFRVRVVGKPDPE-CEWYKN--GVKIE-RSDRIYWYWPEDNVCEL 64
Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPC 147
VT D ++ A N G +
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHA 92
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 41.7 bits (98), Expect = 3e-05
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 14 RIILSNQSLVLQKV-----SRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
R++L + SL ++ SR G Y C A N GEA S+ L V A
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
Score = 39.4 bits (92), Expect = 2e-04
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS--GETLDVGSERFSSGSRGSML- 119
SD IV G E ++C E P +W D GS+
Sbjct: 17 SDLIVSKG----EPATLNCKAEGRPTPT-IEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71
Query: 120 ---RYTPVTELDYGTLSCAAQNAIGTQVT 145
+ + D G C A+N +G V+
Sbjct: 72 LRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 41.4 bits (97), Expect = 3e-05
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAF 213
+P PP + + S +S T DGG P + ++ Y + D +
Sbjct: 7 REPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVK-YRSKDKEDQWLEKKVQGNKD 64
Query: 214 TLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ L T+ V I+ N G S P
Sbjct: 65 HIILEHLQWTMGYEVQITAANRLGYSEP 92
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 40.8 bits (96), Expect = 3e-05
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G A + +++ + S+ R +G YK N GE + ++ V+
Sbjct: 39 GDSGAA--LAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI-FEVIVQ 93
Score = 31.9 bits (73), Expect = 0.041
Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 8/85 (9%)
Query: 64 DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLRYT 122
+ G + ++ P W + E + S + + +
Sbjct: 11 KIKIKAG----FTHNLEVDFIGAPDPT-ATWTVG--DSGAALAPELLVDAKSSTTSIFFP 63
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPC 147
D G +N +G
Sbjct: 64 SAKRADSGNYKLKVKNELGEDEAIF 88
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 42.9 bits (100), Expect = 3e-05
Identities = 25/141 (17%), Positives = 36/141 (25%), Gaps = 19/141 (13%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVIVGAS 72
+ S LVL + Y C +L V P ++ +
Sbjct: 73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVME 132
Query: 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--------------SM 118
S C PA W N G+ L+V E G S
Sbjct: 133 DSAQEIATCNSRNGNPAPKITWYRN--GQRLEVPVEMNPEGYMTSRTVREASGLLSLTST 190
Query: 119 LRYTPVTELDYGTLSCAAQNA 139
L + + CAA +
Sbjct: 191 LYLRLRKDDRDASFHCAAHYS 211
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 40.7 bits (96), Expect = 3e-05
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 4 GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
P+ + + L + R AG Y C A+N G +L V+
Sbjct: 43 RQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE-ARLEVR 97
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 40.9 bits (96), Expect = 4e-05
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 55 VKYAPICKSDRIV-IVGASRSESVDIHCAVEADPPARSFKWKFN----NSGETLDVGSER 109
V +AP I + + I V+ +P + +W +N N + +
Sbjct: 1 VHFAP-----TITFLESPTSDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHV 54
Query: 110 FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
+ L+ T ++ G + A+N G
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87
Score = 39.7 bits (93), Expect = 9e-05
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ L L + + G Y A N G+ + P
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ-ISAHFMGWP 100
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 40.8 bits (96), Expect = 4e-05
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 154 AGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTP 211
+ P P + + + + + P + LE+ + + +
Sbjct: 5 SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64
Query: 212 AFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
A+T+++L +V N++G+S P
Sbjct: 65 AYTVKNLRRSTKYKFKV--IAYNSEGKSNP 92
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 40.8 bits (96), Expect = 5e-05
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 4 GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G ++ + I + SL + G Y A N +G + +L V+
Sbjct: 46 GKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCT-GRLMVQAVN 104
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 40.4 bits (95), Expect = 5e-05
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATS 48
G P+ + L +Q + GTY C A N G+ +
Sbjct: 48 NGQPI-QYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92
Score = 39.2 bits (92), Expect = 1e-04
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
D VI G + + C+V P R W N G+ + +G + L
Sbjct: 19 KDCAVIEG----QDFVLQCSVRGTPVPR-ITWLLN--GQPIQYARSTCEAGV--AELHIQ 69
Query: 123 PVTELDYGTLSCAAQNAIGTQVTPC 147
D+GT +C A+NA+G
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCSA 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 42.9 bits (101), Expect = 5e-05
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
+ L+ ++ + + N L +KV + G Y C A+ T + ++L+V +
Sbjct: 283 SNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLS-VELKVYNFTLH 341
Query: 62 KSD 64
Sbjct: 342 GHH 344
Score = 41.4 bits (97), Expect = 2e-04
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
C + A +++ I C + + W ++ + L GS S G L
Sbjct: 247 NCSEYKESAWEAHLGDTLTIRCDTKQQGM--TKVWVSPSNEQVLSQGSNGSVSVRNGD-L 303
Query: 120 RYTPVTELDYGTLSCAAQNAIG 141
+ V D G +C A
Sbjct: 304 FFKKVQVEDGGVYTCYAMGETF 325
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 40.4 bits (95), Expect = 6e-05
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
GG + R + N +L++ V +Q G Y S N G ++ + + ++
Sbjct: 42 GGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT-VNIHIR 98
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 40.5 bits (94), Expect = 8e-05
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 62 KSDRIVIVGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRG---- 116
+ VG E + ++C + F W++ +S R G
Sbjct: 15 SHGIELSVG----EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 70
Query: 117 ---SMLRYTPVTELDYGTLSCAAQNAIGTQ 143
S L VT D G +CAA + + T+
Sbjct: 71 KFLSTLTIDGVTRSDQGLYTCAASSGLMTK 100
Score = 33.6 bits (76), Expect = 0.018
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ + + +L + V+R G Y C+A + ++ +RV P
Sbjct: 63 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKP 112
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 40.0 bits (94), Expect = 8e-05
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 4 GIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G P+ +++ ++++ SL+++ V+ + AG Y C A N G+ + + L+L V
Sbjct: 47 GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAKE 104
Score = 38.1 bits (89), Expect = 4e-04
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER--FSSGSRGSMLR 120
D V G + + C V P W+ + G+ + S + L
Sbjct: 17 GDLTVQEG----KLCRMDCKVSGLPTP-DLSWQLD--GKPVRPDSAHKMLVRENGVHSLI 69
Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP 160
PVT D G +C A N G ++V+A K P
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSL--ELVVAAKESGP 107
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 39.2 bits (92), Expect = 1e-04
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+PL H T + ++ V + GTY C N + S ++++ +
Sbjct: 40 NELPLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+ + ++ G ++ + C P ++W N L + +
Sbjct: 11 TSQKLMPG----STLVLQCVAVGSPIP-HYQWFKN--ELPL--------THETKKLYMVP 55
Query: 123 PVTELDYGTLSCAAQNAIGTQVT 145
V GT C N +Q +
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDS 78
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 39.6 bits (93), Expect = 1e-04
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPA 212
+ P+PP + V T +SV ++ G P + ++ +A + + T
Sbjct: 5 SSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 213 FTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+++ L RV+ VN+ GR P
Sbjct: 63 YSIGGLSPFSEYAFRVL--AVNSIGRGPP 89
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 39.4 bits (92), Expect = 1e-04
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
+R + N L ++ V AGTY C+ N L V+
Sbjct: 54 PSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT-ATLHVQ 97
Score = 32.9 bits (75), Expect = 0.023
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
+ V G V C ++ PA + W ++G +G L
Sbjct: 18 RSQSVRPG----ADVTFICTAKSKSPAYTLVWTRLHNG--KLPSRAMDFNGI----LTIR 67
Query: 123 PVTELDYGTLSCAAQNAIGT 142
V D GT C N
Sbjct: 68 NVQPSDAGTYVCTGSNMFAM 87
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 39.6 bits (93), Expect = 1e-04
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 150 QVVLAGKPQPPQNCSVR--NETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLT 206
+ + P P++ +++++ T +DG P + LE S ++ V L
Sbjct: 11 HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILE-MSENNAPWTVLLA 69
Query: 207 NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
++D A ++ GL + + VN G+
Sbjct: 70 SVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQF 104
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 4 GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G+ L S++I +N +L + +GTY+ N KGEA+ L V
Sbjct: 46 GVEL--QESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA-TLDVT 99
Score = 36.9 bits (86), Expect = 9e-04
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 10/87 (11%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSM--LR 120
V G ++ V++ P A KW N G L S + + + L
Sbjct: 16 RSHRVPCG----QNTRFILNVQSKPTAE-VKWYHN--GVELQ-ESSKIHYTNTSGVLTLE 67
Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPC 147
D GT N G
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDYA 94
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 39.3 bits (92), Expect = 2e-04
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 154 AGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLPQT-FTLELYSASDLN-LLVNLTNLDT 210
+G PQ+ +V + T ++ + P G + +E + N ++
Sbjct: 6 SGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVER 65
Query: 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
FT++DL +L RVV GVN GRS P
Sbjct: 66 CGFTVKDLPTGARILFRVV--GVNIAGRSEP 94
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 41.5 bits (96), Expect = 2e-04
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 12/127 (9%)
Query: 128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGL-P 186
G C + T P + +P + + + + + ++ + P
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKT--LYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEP 191
Query: 187 QTFTLE-------LYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
+ ++ S D + L D+ RV + VN G
Sbjct: 192 VIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRV--AAVNVHGTR 249
Query: 240 LPVIWDD 246
Sbjct: 250 GFTAPSK 256
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 40.4 bits (94), Expect = 2e-04
Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 11/132 (8%)
Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI--VGASRSES 76
N S+V+ + GTY+C + + +A + V + I S
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123
Query: 77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-----SMLRYTPVTELDYGT 131
I C+ P W N E + + S L + +
Sbjct: 124 RRIICSTSGGFPEPHLSW-LENGEELNAINTTVSQDPETELYAVSSKLDFNMT---TNHS 179
Query: 132 LSCAAQNAIGTQ 143
C +
Sbjct: 180 FMCLIKYGHLRV 191
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 38.9 bits (91), Expect = 2e-04
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 157 PQPPQNCSVRNETTSSVHISCT-PGYDGGLPQT-FTLELYSASDLN-LLVNLTNLDTPAF 213
PP +V + T ++V + P + G + LE + ++ N +D F
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67
Query: 214 TLEDLGLDGTVLMRVVISGVNAKGRSLP 241
T+ L D + +RV VNA G S P
Sbjct: 68 TITGLPTDAKIFVRVK--AVNAAGASEP 93
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 41.0 bits (95), Expect = 2e-04
Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 18/222 (8%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI 68
H I L +++ ++ + + + + + T + + Y P D
Sbjct: 233 HTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFG-TVIFAGYPP----DTPQQ 287
Query: 69 VGASRSESVDIHCAVEADPPAR-------SFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
+ + +I C+ S+ + SG+ + + + L +
Sbjct: 288 LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQ-LLF 346
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS-CTPG 180
+ + + A N +G + L + P P + V++ +++V +S PG
Sbjct: 347 QMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPG 406
Query: 181 YDGGLPQTFTLELYSASDLNLLVNLTNLDTPA----FTLEDL 218
+ +E+ ++ + N+T L+ L
Sbjct: 407 NFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKL 448
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 39.0 bits (91), Expect = 2e-04
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 18/121 (14%)
Query: 51 LKLRVKYAPICKSDRIV-IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER 109
+ L V Y P R+V + I V +PP + W N G+ L S+
Sbjct: 1 VALTVYYPP-----RVVSLEEPELRLEHCIEFVVRGNPPP-TLHWLHN--GQPLR-ESKI 51
Query: 110 FS------SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNC 163
L + T + G + A+N +GT +P P
Sbjct: 52 IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT--ANQTINGHFLKEPFPVDEV 109
Query: 164 S 164
S
Sbjct: 110 S 110
Score = 37.9 bits (88), Expect = 5e-04
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 4 GIPLAHNTSARII------LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57
G PL + + +S L+ K + + G Y A N G A +
Sbjct: 43 GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT-INGHFLK 101
Query: 58 AP 59
P
Sbjct: 102 EP 103
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 40.1 bits (93), Expect = 2e-04
Identities = 17/122 (13%), Positives = 27/122 (22%), Gaps = 12/122 (9%)
Query: 29 RQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASRSESVDIHCAVE 84
R+ C + +R P + VG E+ + C V
Sbjct: 60 REPETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVG----ENFTLSCRVP 114
Query: 85 ADPPARSFKWKFNNSGETL---DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141
P S + L E + E SC A+ +
Sbjct: 115 GAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
Query: 142 TQ 143
Sbjct: 175 PH 176
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 38.5 bits (90), Expect = 3e-04
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
GG LA + L+L AG Y C A N GEA + + V P
Sbjct: 50 GGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA-AAVTVLEPP 107
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 38.0 bits (89), Expect = 3e-04
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 4 GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G + ++ L + K +G Y C+ N+ G +S+ KL +K
Sbjct: 44 GKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC-KLTIK 97
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 39.1 bits (91), Expect = 4e-04
Identities = 14/130 (10%), Positives = 29/130 (22%), Gaps = 22/130 (16%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
+ + SL + ++ Y+ + N L V + S ++ S
Sbjct: 54 YLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK---FFLYV-LEMV--SKPMIYWECS- 106
Query: 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
+ + C V K +
Sbjct: 107 --NATLTCEVLEGTDV-ELKLYQGKE------------HLRSLRQKTMSYQWTNLRAPFK 151
Query: 134 CAAQNAIGTQ 143
C A N + +
Sbjct: 152 CKAVNRVSQE 161
Score = 26.4 bits (58), Expect = 8.4
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
+ S + + +KC A+N + +
Sbjct: 129 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEM 164
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 37.7 bits (88), Expect = 4e-04
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRY 121
V G ES C + +P W G+ L + ++ S
Sbjct: 22 RSMTVYEG----ESARFSCDTDGEPVPT-VTWLRK--GQVLSTSARHQVTTTKYKSTFEI 74
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPC 147
+ V D G S +N+ G Q
Sbjct: 75 SSVQASDEGNYSVVVENSEGKQEAEF 100
Score = 37.7 bits (88), Expect = 6e-04
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G L+ + ++ + + + V G Y N++G+ + L ++
Sbjct: 51 KGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE-FTLTIQ 105
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 40.1 bits (92), Expect = 4e-04
Identities = 35/215 (16%), Positives = 61/215 (28%), Gaps = 35/215 (16%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI 68
+ S+ ++ S ++L +Q AG Y C GE S+ L L K S I+
Sbjct: 40 LDQSSEVLGSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILK 96
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT--- 125
+ C + + W S + S S + T
Sbjct: 97 DQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGS-SDPQGVTCGAATLSA 155
Query: 126 --------------------------ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP 159
E + A + + + + + KP P
Sbjct: 156 ERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDP 215
Query: 160 PQNCSVRNETTSS-VHISCTPGYDGGLPQT-FTLE 192
P+N ++ S V +S P + F+L
Sbjct: 216 PKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT 250
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 39.9 bits (93), Expect = 5e-04
Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 36/195 (18%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKYAPICKS-----DRIVI 68
+S + V+ AG Y C + A SN + + V S +V
Sbjct: 72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVK 131
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
G E V + C +D F + + G + P+
Sbjct: 132 SG----ERVILQC--WSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185
Query: 129 YGTLSCAAQNAIGT------------QVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
GT C VT + L+ +P P + SV +S
Sbjct: 186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKV------QAGESVTLS 239
Query: 177 CTPGYDGGLPQTFTL 191
C+ + L
Sbjct: 240 CSSRSSYD---MYHL 251
Score = 36.4 bits (84), Expect = 0.006
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 17/126 (13%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKYAPICKSDRI-----VI 68
S + + + AGTY+C T A S+ L + V S V
Sbjct: 172 SKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQ 231
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
G ESV + C + + + + R + + + P T
Sbjct: 232 AG----ESVTLSC--SSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--H 283
Query: 129 YGTLSC 134
GT C
Sbjct: 284 GGTYRC 289
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 39.7 bits (93), Expect = 5e-04
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
+L++ +L V G Y C N G + ++ L V A
Sbjct: 403 VLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNAS-AYLNVSTAGTH 447
Score = 37.8 bits (88), Expect = 0.002
Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 60 ICKSDRIVIVG----ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE--RFSSG 113
C + I+ S ++ C P + S KW N G L S R S
Sbjct: 349 QCSAPFIMDAPRDLNISEGRMAELKC--RTPPMS-SVKWLLPN-GTVLSHASRHPRISVL 404
Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
+ G+ L ++ V D G +C N G V AG
Sbjct: 405 NDGT-LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHH 451
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 37.8 bits (88), Expect = 5e-04
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 150 QVVLAGKPQPPQNCSVRNETTS-SVHIS-CTPGYDGGLP-QTFTLELYSASDLNLLVNLT 206
KP P SV+ + S S I+ P +GG + +E+ S+ N +
Sbjct: 11 FTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY 70
Query: 207 NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ T + L +RV ++ G+S
Sbjct: 71 SGATREHLCDRLNPGCFYRLRV--YCISDGGQSAV 103
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 39.7 bits (93), Expect = 6e-04
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 4 GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
++ ++ R+ + + +L ++ Q GTY C A N G + L V+
Sbjct: 424 KHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMP-AHLHVR 476
Score = 38.2 bits (89), Expect = 0.002
Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
V +V C + DPP + W + S + L D
Sbjct: 395 VFVDEGHTVQFVCRADGDPPP-AILWLSPR-KHLVSAKSNGRLTVFPDGTLEVRYAQVQD 452
Query: 129 YGTLSCAAQNAIGT 142
GT C A NA G
Sbjct: 453 NGTYLCIAANAGGN 466
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 37.2 bits (86), Expect = 7e-04
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 5/87 (5%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDL-NLLVNLTNLDTPAFT 214
PP+ T V + P + LE S +L
Sbjct: 8 LSPPRGLVA-VRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELL 66
Query: 215 LEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ L D R+V S P
Sbjct: 67 VPGLIKDVLYEFRLV--AFAGSFVSDP 91
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 37.7 bits (87), Expect = 7e-04
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ H + + ++ + + + GTY+C A N + RVK+
Sbjct: 75 LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTR-APRVKWVR 128
Score = 36.5 bits (84), Expect = 0.002
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 24/117 (20%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR------- 115
+ VG SV++HC P +W F G+ + + G+R
Sbjct: 29 LSQQRWVG----GSVELHCEAVGSPVPE-IQWWFE--GQGPNDICSQLWDGARLDRVHIH 81
Query: 116 -------GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSV 165
S + + E D GT C A N +V + V
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV---RAQAVVLV 135
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.4 bits (87), Expect = 7e-04
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
+ I VG E +++ + P + W G LD + ++
Sbjct: 31 RQTYIRKVG----EQLNLVVPFQGKPRPQ-VVWTKG--GAPLDTSRVHVRTSDFDTVFFV 83
Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
D G + Q +VV
Sbjct: 84 RQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
GG PL ++R+ + +++ +R +G Y+ S + T+ +++RV
Sbjct: 61 GGAPL---DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTAT-IRIRVVEK 116
Query: 59 P 59
Sbjct: 117 A 117
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 37.3 bits (87), Expect = 8e-04
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLE----LYSASDLNLLVNLTNLDTP 211
P PP N + N SV + PGYDG + +E + + LL++ + +
Sbjct: 18 PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 77
Query: 212 AFTLEDLGLD-GTV-LMRVVISGVNAKGRSLP 241
A ++E L+ T R+ VN G S P
Sbjct: 78 ARSMEVPDLNPFTCYSFRMR--QVNIVGTSPP 107
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 37.4 bits (87), Expect = 0.001
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 133 SCAAQNAIGTQV--TPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQTF 189
S + IG P + + L P PP T+SV + P G+ +
Sbjct: 2 SSGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAY 61
Query: 190 TLELYSASDLNLLVNLTNLDTPA--FTLEDL 218
+ + + L A +T L
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGL 92
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 37.4 bits (86), Expect = 0.001
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
++ ++ G Y + N GE N L ++V
Sbjct: 104 IFTVEGAEKEDEGVYTVTVKNPVGEDQVN-LTVKV 137
Score = 28.9 bits (64), Expect = 0.93
Identities = 11/83 (13%), Positives = 25/83 (30%)
Query: 70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDY 129
+++ + S +W F+ G R + S+ + D
Sbjct: 56 ITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDE 115
Query: 130 GTLSCAAQNAIGTQVTPCLYQVV 152
G + +N +G +V+
Sbjct: 116 GVYTVTVKNPVGEDQVNLTVKVI 138
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 36.8 bits (85), Expect = 0.001
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 9 HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+A + + L L + + + G Y A N G+A+++ + P
Sbjct: 52 LEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNP 101
Score = 35.3 bits (81), Expect = 0.005
Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 8/110 (7%)
Query: 71 ASRSESVDIHCAVEADPPARSFKWKFN------NSGETLDVGSERFSSGSRGSMLRYTPV 124
A I +V+ P S +W FN S + + R LR
Sbjct: 12 AVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 70
Query: 125 TELDYGTLSCAAQNAIGTQVTPCLYQVVLA-GKPQPPQNCSVRNETTSSV 173
T ++ G + A N G + + + P N T+
Sbjct: 71 THVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDP 120
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 37.8 bits (88), Expect = 0.001
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 151 VVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLD 209
+V P P+ + I D P +T++ ++
Sbjct: 1 IVQ-DVPNAPKLTGI-TCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV 58
Query: 210 TPAFTLEDLGLD-GTV-LMRVVISGVNAKGRSLP 241
+ + + RV+ N G S P
Sbjct: 59 PNTDSSFVVQMSPWANYTFRVI--AFNKIGASPP 90
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 36.2 bits (84), Expect = 0.002
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ + ++ S L + ++ G Y N G + Q+ L V P
Sbjct: 44 FRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVDKP 101
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+LS+ +L V+ Q G Y C N+ G T++ L V
Sbjct: 393 VLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTAS-ATLNVTGTH 435
Score = 37.8 bits (88), Expect = 0.002
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 60 ICKSDRIVI----VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE--RFSSG 113
C + IV + + + ++ C S W +G + G+ R +
Sbjct: 338 TCYAPVIVEPPADLNVTEGMAAELKCRASTSLT--SVSWI-TPNGTVMTHGAYKVRIAVL 394
Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
S G+ L +T VT D G +C N++G L +
Sbjct: 395 SDGT-LNFTNVTVQDTGMYTCMVSNSVGNTT----ASATLNVTGTHHHH 438
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 36.1 bits (83), Expect = 0.003
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
+ L + + + K AG Y+C + + L V +
Sbjct: 60 LQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHEST 113
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 35.7 bits (82), Expect = 0.003
Identities = 12/90 (13%), Positives = 17/90 (18%), Gaps = 14/90 (15%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPAR--SFKWKFNNSGETLDVGSERFSSGSRGSM-- 118
D V VG S+ V + KW + +
Sbjct: 12 QDGEVTVG----GSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67
Query: 119 ------LRYTPVTELDYGTLSCAAQNAIGT 142
L T G+ C
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKF 97
Score = 35.0 bits (80), Expect = 0.005
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 5 IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
+ L + + L + G+Y+C SN L V
Sbjct: 57 LQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSN-FNLTVH 107
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 36.6 bits (85), Expect = 0.004
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 135 AAQNAIGT-QVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLPQT-FTL 191
A+N G V + +P PP ++ + T +SV +S P +DGG + +
Sbjct: 80 LAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIV 139
Query: 192 ELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
E + + T+ L + G +S N KG S P
Sbjct: 140 E-MQTKGSDKWATCATVKVTEATITGL-IQGEE-YSFRVSAQNEKGISDP 186
Score = 35.4 bits (82), Expect = 0.010
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 156 KPQPPQNCSVRNETTSSVHIS-CTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAF 213
P PPQ+ V+ T +SV ++ P DGG + + +E ++ TN ++
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64
Query: 214 TLEDLGLDGTV-LMRVVISGVNAKGRSLP 241
++ L +G RV+ N G LP
Sbjct: 65 KVDQL-QEGCSYYFRVL--AENEYGIGLP 90
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 35.1 bits (81), Expect = 0.004
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRV 55
+ + L+L ++ Q GTY C A ++ S + + +
Sbjct: 53 LPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 33.2 bits (76), Expect = 0.015
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 15/80 (18%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
V G +V + C V A P W + G L + +L
Sbjct: 18 EGGAVAPG----GTVTLTCEVPAQPSP-QIHWMKD--GVPLPLPP--------SPVLILP 62
Query: 123 PVTELDYGTLSCAAQNAIGT 142
+ D GT SC A ++
Sbjct: 63 EIGPQDQGTYSCVATHSSHG 82
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 35.0 bits (80), Expect = 0.005
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 10 NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
++ L L+ V S G Y+C N G + S L +
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 34.7 bits (79), Expect = 0.007
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADP-PARSFKWKFNN---SGETLDVGSERFSSGSR--- 115
+ I G V C+ + +F W +N ++ + + G
Sbjct: 18 ETQSAIXG----SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELME 73
Query: 116 -GSMLRYTPVTELDYGTLSCAAQNAIGT 142
++LR V G C N G+
Sbjct: 74 YTTILRLRNVEFTSEGXYQCVISNHFGS 101
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 34.7 bits (80), Expect = 0.005
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 55 VKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
+ K V +V C +P + +W N + + +
Sbjct: 8 TNTEKMEKRLHAVPAA----NTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGT 142
+ L V D G +C +N G+
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGS 90
Score = 32.0 bits (73), Expect = 0.044
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
++ + SL+++ V G Y C N G L V
Sbjct: 59 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDV 99
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 34.9 bits (80), Expect = 0.005
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 16/101 (15%)
Query: 155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASD-------------LN 200
G PP +V + SV + + GLP F ++
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 201 LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
N + ++ DL T R++ V + +
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRIL--AVYSNNDNKE 99
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 36.0 bits (82), Expect = 0.005
Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
V + S + C + S +W+ LD S + S+L +
Sbjct: 17 VAVALGASRQLTCRLACADRGASVQWR------GLDTSLGAVQSDTGRSVLTVRNASLSA 70
Query: 129 YGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY 181
GT C G + +V A Q + + V +
Sbjct: 71 AGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVT 122
Score = 31.4 bits (70), Expect = 0.19
Identities = 21/151 (13%), Positives = 37/151 (24%), Gaps = 21/151 (13%)
Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGA 71
+ + L ++ S +AGT C ++L V P + V A
Sbjct: 51 AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT-VQLLVYAFP---NQLTVSPAA 106
Query: 72 SRSESVDIHCAVEADPPARSFKWKFN--------NSGETLDVGSERFSSGSRG------- 116
++ C P F+ + L + +G
Sbjct: 107 LVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFR 166
Query: 117 --SMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
R P+ L C A +
Sbjct: 167 VTERWRLPPLGTPVPPALYCQATMRLPGLEL 197
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 34.7 bits (80), Expect = 0.005
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 12 SARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
S RI +S+ LV+ V + G Y + KL +
Sbjct: 51 SKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLS---AKLNFLEIKV 100
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 36.4 bits (83), Expect = 0.005
Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 17/215 (7%)
Query: 20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI 79
+S++ + CS +Q++LR Y P + + + + S+
Sbjct: 60 ESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHN-LSCLMNLTTSSLIC 118
Query: 80 HCAVEADPPA------RSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
+ +SFK + N + + G + + +
Sbjct: 119 QWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIW 178
Query: 134 CAAQNAIGTQVTPCLYQVVLA-GKPQPPQNCSV------RNETTSSVHISCT-PGYDGGL 185
A+NA+GT ++P L + K +PP ++ + +S +
Sbjct: 179 VQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHI 238
Query: 186 PQTFTLELYSASD--LNLLVNLTNLDTPAFTLEDL 218
Q L LV L+ + L L
Sbjct: 239 NQKCELRHKPQRGEASWALVGPLPLEALQYELCGL 273
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 36.0 bits (83), Expect = 0.006
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 12/121 (9%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGE--ATSNQLKLRVKYAPICKS-----DRIVIVGASR 73
+ ++ + G Y+C + +S+ L+L V A I + +V G
Sbjct: 59 QFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSG--- 115
Query: 74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
+V + C K + S+ + GS ++ PV+
Sbjct: 116 -GNVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYR 173
Query: 134 C 134
C
Sbjct: 174 C 174
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 36.3 bits (83), Expect = 0.006
Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 26/231 (11%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSA-GTYKCSAINTKGEATSNQLKLRVKYAPIC 61
+ I + S+ ++ + T + + + P
Sbjct: 48 NHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVY-GITIISGLPP-- 104
Query: 62 KSDRIVIVGASRSESVDIHCAVEADPPA-------RSFKWKFNNSGETLDVGSERFSSGS 114
++ + +E + C + +W + + S
Sbjct: 105 --EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV 162
Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY-QVVLAGKPQPPQNCSVR--NETTS 171
S + + + A+NA+G + + V KP PP N SV E +S
Sbjct: 163 DYSTVYFVN-----I-EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSS 216
Query: 172 SVHISCT-PGYDGGLPQTFTLELYSASD---LNLLVNLTNLDTPAFTLEDL 218
+ ++ T P + + ++ + + T +FT++DL
Sbjct: 217 ILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDL 267
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 35.6 bits (82), Expect = 0.008
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 16/123 (13%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKS-----DRIVIVGA 71
++ V+ + AG Y+C S+ L+L V +++ G
Sbjct: 62 TDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPG- 120
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
E++ + C+ P R K + SG + PV G
Sbjct: 121 ---ENISLTCSSAHIPFDRFSLAKEGELSLP------QHQSGEHPANFSLGPVDLNVSGI 171
Query: 132 LSC 134
C
Sbjct: 172 YRC 174
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 35.2 bits (81), Expect = 0.009
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVKYAPICKS-----DRIVIVGA 71
+ + ++ AG Y+C + G S+ L+L + A + +V G
Sbjct: 56 NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSG- 114
Query: 72 SRSESVDIHCAVEADPPARSFKW-KFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
+SV + C ++ P +F K + L + SE + + +PVT + G
Sbjct: 115 ---KSVTLLC--QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAE-FPMSPVTSVHGG 168
Query: 131 TLSC 134
T C
Sbjct: 169 TYRC 172
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.4 bits (81), Expect = 0.010
Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 19/184 (10%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPICK 62
P A + R+ + SL L + + AG Y+C + T +A QL++ A
Sbjct: 66 FRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLL 125
Query: 63 SDRIVIVGASRSESVDIHCAVEAD-PPARSFKWKFNNSG------ETLDVGSERFSSGSR 115
D++ + + C P A + W+ + DV +
Sbjct: 126 LDQVGM----KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMD 181
Query: 116 G-----SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT 170
G S L+ E C ++A + TP L + +
Sbjct: 182 GTFNVTSCLKLNSSQEDPGTVYQCVVRHA--SLHTPLRSNFTLTAARHSLSETEKTDNFS 239
Query: 171 SSVH 174
++ H
Sbjct: 240 AAAH 243
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 33.8 bits (78), Expect = 0.010
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 3 GGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
G + +R + L+++ ++ A Y + A L + +K
Sbjct: 43 NGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK---LSVDLKSG 99
Query: 59 P 59
P
Sbjct: 100 P 100
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 35.2 bits (81), Expect = 0.010
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 11/123 (8%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAP-----ICKSDRIVIVGA 71
+ + ++ AG Y+C + G S+ L+L V +V G
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSG- 114
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
E+V + C R + + + + S+ SG ++ PVT
Sbjct: 115 ---ENVTLQCGSR-LRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWM 170
Query: 132 LSC 134
L C
Sbjct: 171 LRC 173
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 34.4 bits (79), Expect = 0.018
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 135 AAQNAIGT-QVTPCLYQVVLAGKP-QPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTL 191
AA N G +++ + P+ E +S+ ++ DGG P + + +
Sbjct: 86 AALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV 145
Query: 192 ELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ S + L+ L + + V N +G+S
Sbjct: 146 RYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYV--VAENQQGKSKA 193
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 33.1 bits (76), Expect = 0.018
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
GG + +S+R + Q LV+++ + AG S +A L V+
Sbjct: 46 GGKTV--GSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKA-----SLIVRER 98
Query: 59 P 59
Sbjct: 99 S 99
Score = 31.2 bits (71), Expect = 0.11
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSM--LR 120
V+ G ES C + + + W G+T+ S RF + +G L
Sbjct: 16 KTMEVLEG----ESCSFECVLSHESASDPAMWTVG--GKTV-GSSSRFQATRQGRKYILV 68
Query: 121 YTPVTELDYGTLSCAAQNAIGT 142
D G + + +
Sbjct: 69 VREAAPSDAGEVVFSVRGLTSK 90
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 33.2 bits (76), Expect = 0.021
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLEL-YSASDLNLLVNLTNLDTPAFT 214
P P++ ++ V +S P + QTFT+ + +N T + T
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLT 77
Query: 215 LEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ +L + RVV N G
Sbjct: 78 VGNLKPEAMYTFRVV--AYNEWGPGES 102
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 32.7 bits (75), Expect = 0.028
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEAT 47
+ + ++ LV++ S + AG Y C +K A+
Sbjct: 44 DRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 33.8 bits (77), Expect = 0.029
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 111 SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY-QVVLAGKPQPPQNCSVR--N 167
+ Y+ V ++ + A+NA+G + + V KP PP N SV
Sbjct: 58 RDTPTSCTVDYSTVYFVNI-EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSE 116
Query: 168 ETTSSVHISCT-PGYDGGLPQTFTLELYSASD---LNLLVNLTNLDTPAFTLEDL 218
E +S + ++ T P + + ++ + + T +FT++DL
Sbjct: 117 ELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDL 171
Score = 33.8 bits (77), Expect = 0.031
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 157 PQPPQN--CSVRNETTSSVHISCT--PGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPA 212
P+ P+N C V + C G + L FTL+ + DTP
Sbjct: 8 PEKPKNLSCIVNEGKK----MRCEWDGGRETHLETNFTLK-SEWATHKFADCKAKRDTPT 62
Query: 213 FTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
D V + V + NA G+
Sbjct: 63 SCTVDYSTVYFVNIEVWVEAENALGKVTS 91
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 34.1 bits (78), Expect = 0.029
Identities = 31/193 (16%), Positives = 50/193 (25%), Gaps = 35/193 (18%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKSDRIVIVGAS---- 72
+ + ++ + AG Y C + SN L L V + V
Sbjct: 58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMY---DTPTLSVHPGPEVI 114
Query: 73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT--PVTELDYG 130
E V +C D F + S G + PVT G
Sbjct: 115 SGEKVTFYC--RLDTATSMFLL-------LKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG 165
Query: 131 TLSCAAQ----------NAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPG 180
T C + VT + L P+ P + +T + ++ G
Sbjct: 166 TYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSL--APEDP---TFPADTWGTYLLTTETG 220
Query: 181 YDGG-LPQTFTLE 192
T +
Sbjct: 221 LQKDHALWDHTAQ 233
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 32.3 bits (74), Expect = 0.031
Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 3 GGIPLAHNTSARIILS----NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
G PL S + L+L G A NTK A L+VK
Sbjct: 41 KGQPL--AASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAA-----NLKVK 91
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 34.2 bits (77), Expect = 0.034
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 6/137 (4%)
Query: 87 PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP 146
P + + SG++ V + L + + +N +G +
Sbjct: 318 PRNTEYTLFESISGKS-AVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSA 376
Query: 147 CLYQVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQTFTLELYSASD----LNL 201
+ V P P + V++ ++ V S PG + +E+ A+ N
Sbjct: 377 VVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNA 436
Query: 202 LVNLTNLDTPAFTLEDL 218
+ T ++ L
Sbjct: 437 TIRGAEDSTYHVAVDKL 453
Score = 30.3 bits (67), Expect = 0.58
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 18/123 (14%)
Query: 64 DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP 123
D++V+ G++ + I C + N+ L + + P
Sbjct: 212 DKVVLAGSN----MTICCMSPTKV----LSGQIGNTLRPL----IHLYGQTVAIHILNIP 259
Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDG 183
V+E + + + V Y P PQ S + S PG
Sbjct: 260 VSENSGTNIIFITDDDVYGTVVFAGY------PPDVPQKLSCETHDLKEIICSWNPGRIT 313
Query: 184 GLP 186
GL
Sbjct: 314 GLV 316
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 32.6 bits (74), Expect = 0.038
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 13 ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
R+ + +L + KV ++ TY + G ++KL+V P+
Sbjct: 66 VRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV-LDPV 112
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 33.2 bits (76), Expect = 0.043
Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 21/125 (16%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVKYAPICKS-----DRIVIVGA 71
L + + R AG Y+CS N S+QL+L S V G
Sbjct: 50 DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG- 108
Query: 72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT--PVTELDY 129
V + C + F + + + R + VT
Sbjct: 109 ---GDVTLQC--QTRYGFDQFAL-------YKEGDPAPYKNPERWYRASFPIITVTAAHS 156
Query: 130 GTLSC 134
GT C
Sbjct: 157 GTYRC 161
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 32.0 bits (73), Expect = 0.051
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-VNLTNLDTPA 212
AG P P +S+ +S Q +++E + L +N+ N +
Sbjct: 15 AGVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTS 74
Query: 213 FTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+EDL + + + RV + +G
Sbjct: 75 VVVEDLLPNHSYVFRVR--AQSQEGWGRE 101
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 31.6 bits (72), Expect = 0.066
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 4 GIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEAT 47
G + + S I S ++L + + S Y+C K
Sbjct: 53 GQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 31.7 bits (72), Expect = 0.068
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLE 216
P V T +S+ IS + + Y + N V + + T
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSSVYYYRIT-YGETGGNSPVQEFTVPYSSSTAT 63
Query: 217 DLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSG 251
GL V + + ++ S++
Sbjct: 64 ISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 31.6 bits (72), Expect = 0.076
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 3 GGIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
PL N I L L++++ + +GT A + + A LRV P
Sbjct: 50 DKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAA-----LRVTEKP 104
Query: 60 I 60
Sbjct: 105 S 105
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 31.5 bits (72), Expect = 0.078
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 157 PQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTL 215
P P +N + + +S+ I+ P Y G Q + L + N+ D ++ L
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLF-CTEVSTGKEQNIEV-DGLSYKL 65
Query: 216 EDL 218
E L
Sbjct: 66 EGL 68
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 32.5 bits (74), Expect = 0.081
Identities = 22/126 (17%), Positives = 32/126 (25%), Gaps = 23/126 (18%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKSDRIVIVGASRS-- 74
+ + ++ + AG Y C + SN L L V +
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMY-----DTPTLSVHPGPE 109
Query: 75 ----ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT--PVTELD 128
E V +C D F + S G + PVT
Sbjct: 110 VISGEKVTFYC--RLDTATSMFLL-------LKEGRSSHVQRGYGKVQAEFPLGPVTTAH 160
Query: 129 YGTLSC 134
GT C
Sbjct: 161 RGTYRC 166
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 32.6 bits (74), Expect = 0.082
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 17/126 (13%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKYAPICKS-----DRIVI 68
S + + ++++ AGTY+C T A S+ L + + S V+
Sbjct: 61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVL 120
Query: 69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
G E+V + C + + + + +G+ + P T
Sbjct: 121 AG----ENVTLSC--SSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--H 172
Query: 129 YGTLSC 134
GT C
Sbjct: 173 GGTYRC 178
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 32.5 bits (74), Expect = 0.084
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 14/98 (14%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTL 215
PP +V + SV + + GLP F ++ Y TN + P
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQ-YRMVGKRKNWQTTNDNIPYGKP 60
Query: 216 EDLGLDGTVLMRVV------------ISGVNAKGRSLP 241
+ G V I V + +
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 98
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 32.6 bits (74), Expect = 0.10
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 9/122 (7%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKYAPICKSDRIVIVGASR 73
S + + + + AGTY+C T A S+ L + + S
Sbjct: 60 SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVL 119
Query: 74 S-ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
+ ESV + C + + + +G+ + P T GT
Sbjct: 120 AGESVTLSC--SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTY 175
Query: 133 SC 134
C
Sbjct: 176 RC 177
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 32.8 bits (74), Expect = 0.12
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 109 RFSSGSRGSMLRYTPVTELDYGT---LSCAAQNAIGTQVTPCLYQVV-LAGKPQPPQNCS 164
R+S G V++L+ + A+N + VT ++ ++ P
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVR 448
Query: 165 VRNETTSSVHIS-CTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGT 223
+ +T+S+ +S P + + D N N+ + + TL+DL T
Sbjct: 449 LEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSN-SYNVRRTEGFSVTLDDL-APDT 506
Query: 224 VLMRVVISGVNAKG 237
V + + +G
Sbjct: 507 T-YLVQVQALTQEG 519
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 30.8 bits (70), Expect = 0.13
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 11/62 (17%)
Query: 3 GGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
G L R L L + +S AG Y C + AT L V+
Sbjct: 43 GPETLRD--GGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSAT-----LTVRAL 95
Query: 59 PI 60
P
Sbjct: 96 PA 97
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 32.0 bits (72), Expect = 0.14
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTL 191
P P+ R+ + PG DGGLP ++L
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSL 38
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 30.4 bits (69), Expect = 0.16
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 3 GGIPLAHNTSARIILS----NQSLVLQKVSRQSAGTYKCSAINTKGEAT 47
GG + + S + L+ +L +++V G+Y A ++K +
Sbjct: 44 GGSDI--SASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFD 90
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 30.4 bits (69), Expect = 0.17
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 12 SARIILS----NQSLVLQKVSRQSAGTYKCSAINTKGEAT 47
S +++ L+L + Q +G ++C
Sbjct: 53 SELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG 92
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 30.5 bits (68), Expect = 0.19
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 10 NTSARIILSNQSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKLRVK 56
I L L++ S + +G Y C +K E + L LR +
Sbjct: 49 EDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 96
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 30.0 bits (68), Expect = 0.20
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
L+ V ++ G Y+ + EA +L V+
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNGGQCEA-----ELIVE 98
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 30.0 bits (68), Expect = 0.21
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 3 GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G L + LV++ + Q +G Y CS + AT L V P
Sbjct: 44 GNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSAT-----LTVTALP 97
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 30.5 bits (69), Expect = 0.23
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 153 LAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLP-QTFTLELYSASDLNL-LVNLTNLD 209
P P++ +T + ++ TP D T+++ + N ++
Sbjct: 14 TGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPG 73
Query: 210 TPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
T+++L + RV+ N G
Sbjct: 74 EMQVTIQNLMPATVYIFRVM--AQNKHGSGES 103
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 31.2 bits (70), Expect = 0.25
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 92 FKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
E E L V D TL A + + + +
Sbjct: 36 LYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEH 95
Query: 152 VLAGKPQPPQNCSVRNETTSSVHIS 176
V KP+ P N +V + ++ ++
Sbjct: 96 V---KPRAPGNLTVHTNVSDTLLLT 117
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 30.7 bits (69), Expect = 0.25
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 8/74 (10%)
Query: 8 AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIV 67
I +L +Q V G Y C ++L+V+ P
Sbjct: 73 TELLKESIGEGKVALRIQNVRFSDEGGYTCF-FRDHSYQEEAAVELKVE-DPFYW----- 125
Query: 68 IVGASRSESVDIHC 81
+ RS S H
Sbjct: 126 -INPGRSRSHHHHH 138
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 31.7 bits (70), Expect = 0.26
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
L + ++ ++L++ +S +G Y+C + T Q+ +
Sbjct: 569 QNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKH 621
Score = 29.3 bits (64), Expect = 1.3
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
Query: 78 DIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ 137
WKF N G + G + ++ ++E D G C ++
Sbjct: 550 TAELKCSQKSNLARVFWKFQN-GVLKAESPKYGLMGRKNLLIF--NLSEGDSGVYQCLSE 606
Query: 138 NAIGTQVTPCLYQVVLAGKPQPPQ 161
+ + + + P+
Sbjct: 607 ERVKNKTVFQVVAKHVLEVKVVPK 630
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 29.9 bits (67), Expect = 0.30
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD 64
L LQ ++ G Y C + ++ L V + + +
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHG 115
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 29.7 bits (67), Expect = 0.30
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLT-NLDTPAFTL 215
PP N ++ +ET S+ +S TP G + L AS L +++ TL
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPP--LGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTL 65
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLPV 242
L RV++S + A GRS V
Sbjct: 66 P--DLQAATKYRVLVSAIYAAGRSEAV 90
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 29.6 bits (67), Expect = 0.32
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 12 SARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
S R+ + + LV+ + G Y + K+ V P
Sbjct: 49 SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLP---AKVHVISGP 97
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 29.7 bits (67), Expect = 0.34
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 12 SARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
S + I ++ L + Y +A + K L V+ P
Sbjct: 51 STKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTE-----LFVRSGP 97
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 29.7 bits (67), Expect = 0.38
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 12 SARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
S ++L + LVL V + +G Y C + T + V P+
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT-----VTVTEPPV 103
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 29.3 bits (66), Expect = 0.52
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 3 GGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
G L + L ++ + + AG Y C + A L V+ P
Sbjct: 54 GHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM-----LTVRAMP 107
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 29.8 bits (66), Expect = 0.52
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 18/142 (12%)
Query: 18 SNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSES 76
++ LVLQ S +G Y C + LK RV A K D A + ++
Sbjct: 42 HDKHLVLQDFSEVEDSGYYVCYTPASNKNTY-LYLKARVGSADDAKKDAAKKDDAKKDDA 100
Query: 77 VDIHCAVEADPPARSFKWKFNNSGETLDV--------------GSERFSSGSRGSMLRYT 122
+ + + + ++ + GS + +
Sbjct: 101 KKDG--SQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLG 158
Query: 123 PVTELDYGTLSCAAQNAIGTQV 144
+ GT C +
Sbjct: 159 NNAKDPRGTYQCQGAKETSNPL 180
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 29.2 bits (66), Expect = 0.53
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 155 GKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAF 213
P P N + +S+ ++ TP G Q + L Y + ++ + ++
Sbjct: 16 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLY-YMEKGTDKEQDVDV-SSHSY 73
Query: 214 TLEDLGLDGTVLMRVVISGVNAKGRSLP 241
T+ L RVV N G +
Sbjct: 74 TINGLKKYTEYSFRVV--AYNKHGPGVS 99
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 30.2 bits (68), Expect = 0.58
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 157 PQPPQNCSVRNET-TSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLVNLTNLDTPAF 213
PP N + T + +S + + + L + + D +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPD-ITGYRITTTPTNGQQGNSLEEVVHADQSSC 60
Query: 214 TLEDLGLDGTVLMRVVISGVNAKGRSLPV 242
T ++L + V V S+P+
Sbjct: 61 TFDNLSPGLEYNVSVY--TVKDDKESVPI 87
Score = 29.4 bits (66), Expect = 1.1
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLT-NLDTPAFTL 215
PP + N ++ ++ P F + + + L+ + A L
Sbjct: 95 VPPPTDLRFTNIGPDTMRVTWAPP-PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 153
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLPV 242
+L L GT V +S V + S P+
Sbjct: 154 TNL-LPGTEY-VVSVSSVYEQHESTPL 178
Score = 27.5 bits (61), Expect = 4.3
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 11/133 (8%)
Query: 124 VTELDYGTL---SCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPG 180
+T L GT S ++ + P + T +S +
Sbjct: 153 LTNLLPGTEYVVSVSSVYEQHESTPL---RGRQKTGLDSPTGIDFSDITANSFTVHWIAP 209
Query: 181 YDGGLPQTFTLELYSA-SDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
+ + + + + TL +L GT V I +N + S
Sbjct: 210 --RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNL-TPGT-EYVVSIVALNGREES 265
Query: 240 LPVIWDDFSMSGA 252
+I ++S
Sbjct: 266 PLLIGQQSTVSDV 278
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 28.8 bits (65), Expect = 0.59
Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPA 212
+ P + V + + ++ G + LE + + ++ + +
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLE-WGGVEGSMQICYCGPGL-S 62
Query: 213 FTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
+ ++ L T RV ++ G
Sbjct: 63 YEIKGLSPATTYYCRV--QALSVVGAGPF 89
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 29.8 bits (66), Expect = 0.62
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 157 PQPPQN--CSVRNETTSSVHISCTPGYDGGLPQTFTL 191
P P N C + + TT+S+ PG + LP +F L
Sbjct: 5 PASPSNLSC-LMHLTTNSLVCQWEPGPETHLPTSFIL 40
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 30.2 bits (68), Expect = 0.62
Identities = 33/151 (21%), Positives = 47/151 (31%), Gaps = 27/151 (17%)
Query: 104 DVGSERFSSGSRGSMLRYTPVTELDYGTL---SCAAQNAIG-------TQVTPCLYQVVL 153
G F S+ YT VT L+ G S G TQ T
Sbjct: 135 GEGIPIFEDFVDSSVGYYT-VTGLEPGIDYDISVITLINGGESAPTTLTQQTA------- 186
Query: 154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPA- 212
PP + N ++ ++ P L F + YS V ++
Sbjct: 187 ---VPPPTDLRFTNIGPDTMRVTWAPPPSIDL-TNFLVR-YSPVKNEEDVAELSISPSDN 241
Query: 213 -FTLEDLGLDGTVLMRVVISGVNAKGRSLPV 242
L +L L GT V +S V + S P+
Sbjct: 242 AVVLTNL-LPGT-EYVVSVSSVYEQHESTPL 270
Score = 27.9 bits (62), Expect = 4.2
Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVNLTNLDTPAFTL 215
+ S + T SS+ + TP + + + + +A + + + + +T+
Sbjct: 96 VPQLTDLSFVDITDSSIGLRWTPL-NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTV 154
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLPVIW 244
GL+ + + + + G S P
Sbjct: 155 T--GLEPGIDYDISVITLINGGESAPTTL 181
Score = 26.7 bits (59), Expect = 7.7
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVNLTNLDTPAFTL 215
P + T +S + + + + + + TL
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIAP--RATITGYRIRHHPEHFSGRPREDRVPHSRNSITL 335
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLPVI 243
+L GT V I +N + S +I
Sbjct: 336 TNL-TPGT-EYVVSIVALNGREESPLLI 361
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 28.9 bits (65), Expect = 0.63
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 3/87 (3%)
Query: 156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTL 215
+ P V++ T ++ I+ P F L Y D+ +L
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPP--SQPVDGFELT-YGIKDVPGDRTTIDLTEDENQY 58
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLPV 242
L V + S P
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSSNPA 85
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 29.7 bits (67), Expect = 0.70
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTL 215
P++ V + T +++ + + L S S + + D+ +F L
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRR--PVAKFDRYRLTYVSPSGKKNEMEIPV-DSTSFIL 62
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLPV 242
L GT + + + +S P
Sbjct: 63 RGL-DAGTEY-TISLVAEKGRHKSKPT 87
Score = 28.2 bits (63), Expect = 1.8
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLE 216
P+ S + T +S +S TP ++ + + V + L
Sbjct: 95 VGSPKGISFSDITENSATVSWTPPR--SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLV 152
Query: 217 DLGLDGTVLMRVVISGVNAKGRSLPV 242
L V V I V S P+
Sbjct: 153 --KLVPGVDYNVNIISVKGFEESEPI 176
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 30.2 bits (68), Expect = 0.70
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 151 VVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDT 210
V PP+ V + T +++ IS F ++ A+ + D
Sbjct: 107 VTTLENVSPPRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDV 164
Query: 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD 245
++T+ L GT ++ + +N RS PV+ D
Sbjct: 165 RSYTITGL-QPGT-DYKIYLYTLNDNARSSPVVID 197
Score = 29.0 bits (65), Expect = 1.6
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVNLTNLDTPAFTL 215
P N T +S+ +S P + ++ +V T+
Sbjct: 202 IDAPSNLRFLATTPNSLLVSWQPP--RARITGYIIKYEKPGSPPREVVPRPRPGVTEATI 259
Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLPVIW 244
L GT + + + +S P+I
Sbjct: 260 TGL-EPGT-EYTIYVIALKNNQKSEPLIG 286
Score = 27.1 bits (60), Expect = 5.3
Identities = 11/94 (11%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 151 VVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVNLTNLD 209
+ P + T +S+ TP + + + + D
Sbjct: 15 LFQGPAIPAPTDLKFTQVTPTSLSAQWTPP--NVQLTGYRVRVTPKEKTGPMKEINLAPD 72
Query: 210 TPAFTLEDLGLDGTV-LMRVVISGVNAKGRSLPV 242
+ + + L + T + V + S P
Sbjct: 73 SSSVVVSGL-MVATKYEVSVY--ALKDTLTSRPA 103
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 28.8 bits (65), Expect = 0.81
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 152 VLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTP 211
G P P N E+ +S+ +S TP + + L Y + +T
Sbjct: 13 TQTGVPGQPLNFKAEPESETSILLSWTPPRSDTI-ANYELV-YKDGEHGEEQRITIEPGT 70
Query: 212 AFTLEDL 218
++ L+ L
Sbjct: 71 SYRLQGL 77
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 28.5 bits (64), Expect = 0.85
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 3 GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEAT 47
G L ++S+++ + LV+Q+ + AG Y C A +
Sbjct: 47 DGKKL--SSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 1.0
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 22/60 (36%)
Query: 59 PICKSDRIVIVGASRSESVDIHCA----VEADPPARSFKWKFNNSGETLDVGSE-R-FSS 112
P CK IV R D+ CA V +D + +D SE R FS+
Sbjct: 25 PECKVYPPKIV--ERFSEGDVVCALCGLVLSD--------------KLVDTRSEWRTFSN 68
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.3 bits (63), Expect = 1.1
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVK 56
S+ + + GTY+C G A L + VK
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 28.4 bits (63), Expect = 1.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 15 IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
II N SL++Q + + AG Y I + + RV
Sbjct: 67 IIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 29.6 bits (65), Expect = 1.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSA 39
N L ++ ++ Q G Y C A
Sbjct: 546 GHQSPNCILFIENLTAQQYGHYFCEA 571
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 28.2 bits (63), Expect = 1.2
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAF 213
+ + P++ + T + ++ T P + L ++ + L T +
Sbjct: 5 SSGLEAPRDLEAKEVTPRTALLTWTEPP--VRPAGYLLSFHTPGGQTQEILLPGGIT-SH 61
Query: 214 TLEDLGLDGTVLMRVVISGVNAKGRSLPV 242
L L T + + + PV
Sbjct: 62 QLLGL-FPSTSY-NARLQAMWGQSLLPPV 88
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 28.1 bits (63), Expect = 1.3
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 155 GKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAF 213
P +SV + P G+ + ++ Y + T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRA 68
Query: 214 TLEDL 218
T+ L
Sbjct: 69 TVSGL 73
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 29.0 bits (65), Expect = 1.3
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLE 216
PP + N ++ ++ P F + YS V ++ +
Sbjct: 114 VPPPTDLRFTNIGPDTMRVTWAPP-PSIDLTNFLVR-YSPVKNEEDVAELSISPSDNAVV 171
Query: 217 DLGLDGTVLMRVVISGVNAKGRSLPV 242
L V +S V + S P+
Sbjct: 172 LTNLLPGTEYVVSVSSVYEQHESTPL 197
Score = 27.5 bits (61), Expect = 3.9
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVNLTNLDTPAFTLED 217
P + S + T SS+ + TP + + + + +A + + + + +T+
Sbjct: 25 QPTDLSFVDITDSSIGLRWTPL-NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTG 83
Query: 218 LGLDGTVLMRVVISGVNAKGRSLPV 242
L + V V G S P
Sbjct: 84 LEPGIDYDISVY--TVKNGGESTPT 106
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 28.2 bits (63), Expect = 1.3
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTL 215
P P N T + P T+ ++ +A L T + L
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ--NPVDTYDIQ-VTAPGAPPLQAETPGSAVDYPL 63
Query: 216 EDL 218
DL
Sbjct: 64 HDL 66
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
cell membrane, disulfide bond, glycoprotein,
glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
{Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Length = 875
Score = 29.4 bits (66), Expect = 1.3
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 45 EATSNQLKLRV-----KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS 99
T N+L++ + K + I I+G +V + P S ++++
Sbjct: 790 SVTQNRLEVNISQSTYKDPNNLAFNEIKILGTEEPSNVTVK--HNGVPSQTSPTVTYDSN 847
Query: 100 GETLDV 105
+ +
Sbjct: 848 LKVAII 853
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 28.6 bits (64), Expect = 1.5
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 157 PQPPQNCSVRNETTSSVHISCTP-----GYDGGLPQTFTLELYSASDLNLLVNLTNLDTP 211
PP + ++ I+ + +T+ + N N T
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 212 AFTLEDL 218
++ + L
Sbjct: 65 SYLVTGL 71
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 27.6 bits (61), Expect = 1.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 155 GKPQPPQNCSVRNETTSSVHIS 176
G P++ V T +S+ IS
Sbjct: 2 GVSDVPRDLEVVAATPTSLLIS 23
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 28.3 bits (63), Expect = 1.9
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 9/98 (9%)
Query: 72 SRSESVDIHCAV--EADPPARSFKWKFNNSGETLDVGSERFSSGSRG--SMLRYTPVTEL 127
++ C + D +F W ++ + ER G S+L
Sbjct: 17 LLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN 76
Query: 128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSV 165
T +C A K V
Sbjct: 77 HGKTFTCTAAYPESKTPLTATLS-----KSGNTFRPEV 109
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 27.6 bits (61), Expect = 2.0
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
+ L + +L L ++ + G Y C + LRV
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 27.9 bits (61), Expect = 3.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
S + +++ AG Y+C G SN +L VK
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 26.9 bits (60), Expect = 3.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 133 SCAAQNAIGT-QVTPCLYQVVLAGKPQ-PPQNCSVRNETTSSVHIS 176
S ++ N G T + V L+ P PPQN S+ + S+ +S
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVS 48
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 27.4 bits (60), Expect = 3.6
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLEL-YSASDLNLLVNLTNLDTPAFT 214
P P+N ++ + S + ++ + L + Y + + F+
Sbjct: 98 IPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSVDYRHKFS 154
Query: 215 LEDL 218
L +
Sbjct: 155 LPSV 158
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 26.9 bits (59), Expect = 3.6
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVKYAP 59
+ S+V+ + GT+ C N ++Q+ L V
Sbjct: 80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 27.4 bits (60), Expect = 3.7
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 89 ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148
A + ++ + E L V ++ +T +D TL + + +V
Sbjct: 37 AWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQ 96
Query: 149 YQVVLAG-KPQPPQNCSVRNETTSSVHIS 176
+ P + V + T +IS
Sbjct: 97 DFKPFENLRLMAPISLQVVHVETHRCNIS 125
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 26.7 bits (59), Expect = 3.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 17 LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
L N SL + + + G Y C + + S + LRV
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 26.5 bits (59), Expect = 3.8
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
L + + + + TY C + A +L V+
Sbjct: 64 RLTISALEKADSDTYTCDIGQAQSRA-----QLLVQ 94
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 26.4 bits (58), Expect = 5.0
Identities = 7/59 (11%), Positives = 14/59 (23%)
Query: 75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
ESV ++ + W S + G + + Y +
Sbjct: 15 ESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYN 73
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 26.2 bits (58), Expect = 5.2
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 159 PPQNCSVRNETTSSVHISCTP------GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPA 212
PP N V N T ++ ++ P G T + V+LT+ T +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILPIEGI------LVTFGRKNDPSDETTVDLTSSIT-S 56
Query: 213 FTLEDLGLDGTVLMRVVISGVNAKGRSLPV 242
TL +L + T +R+V N + S PV
Sbjct: 57 LTLTNLEPNTTYEIRIV--ARNGQQYSPPV 84
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 27.1 bits (59), Expect = 5.4
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLEL-YSASDLNLLVNLTNLDTPAFT 214
P P+N ++ + S + ++ + L + Y + + F+
Sbjct: 136 IPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSVDYRHKFS 192
Query: 215 LEDL 218
L +
Sbjct: 193 LPSV 196
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 25.8 bits (57), Expect = 5.5
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL-LVNLTNLDTPAFTLED 217
P+ + + S+ I+ G + + S D L + + L+
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQ--GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQG 61
Query: 218 LGLDGTVLMRVVISGVNAKGRSLPV 242
L G+ V + ++ S P+
Sbjct: 62 L-RPGSEY-TVSVVALHDDMESQPL 84
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 26.1 bits (57), Expect = 5.9
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 156 KPQPPQNCSVR--NETTSSVHISCTPGYDGGLPQTFTL--EL-YSASDLNLLVNLTNLDT 210
KP PP+N R + ++ P++F L L Y L+ ++ +
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66
Query: 211 PAFTLEDLGLDGTVLMRV 228
A T+ D +++V
Sbjct: 67 TAHTITDAYAGKEYIIQV 84
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 25.9 bits (57), Expect = 6.1
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLT-NLDTPAFTLED 217
P + V N T +S+ +S TP + + ++ LT + + T+
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP--SATITGYRITYTPSNGPGEPKELTVPPSSTSVTITG 61
Query: 218 LGLDGTVLMRVVISGVNAKGRSLPV 242
L G V + + S P+
Sbjct: 62 L-TPGVEY-VVSVYALKDNQESPPL 84
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 25.9 bits (57), Expect = 6.2
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 157 PQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTL 215
P + V + SS+ ++ P G + ++ Y ++ L T
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVK-YHEKGAEGPSSVRFLKTSENRA 66
Query: 216 EDLGLDGTVLMRVVISGVNAKG 237
E GL V + + G
Sbjct: 67 ELRGLKRGASYLVQVRARSEAG 88
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 27.1 bits (60), Expect = 6.8
Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 42 TKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGE 101
+ + + I+G + S + ++ A P + ++ S +
Sbjct: 821 SNNTLDIVCTHSSYQEGTTLAFQTVKILGLTDSVT-EVRVAENNQPMNAHSNFTYDASNQ 879
Query: 102 TLDV 105
L +
Sbjct: 880 VLLI 883
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 26.6 bits (58), Expect = 6.8
Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 136 AQNAIGTQVTPCLYQVVLAG-KPQPPQNCSV-RNETTSSVHISCTPGYDGGLPQTFTLEL 193
+++G+ +P + + KP PP + + IS F +
Sbjct: 88 INHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIRY 147
Query: 194 YSASDLN--LLVNLTNLDTPAFTLEDLGLDGTVLMRV 228
+ + + + + + +L L ++V
Sbjct: 148 GLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQV 184
>1w8k_A Apical membrane antigen 1; plasmodium antigen, malaria vaccine
candidate; 1.8A {Plasmodium vivax} PDB: 1w81_A 2j4w_D
Length = 447
Score = 27.2 bits (59), Expect = 7.1
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 182 DGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
DGG + S L L + L D+ L T V++G P
Sbjct: 83 DGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVMAGDQNSNYRHP 142
Query: 242 VIWD 245
++D
Sbjct: 143 AVYD 146
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 26.9 bits (58), Expect = 7.2
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTP-AFT 214
+ PP ++ + S+ + TF ++ + L +
Sbjct: 321 QMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMA 380
Query: 215 LEDL 218
L L
Sbjct: 381 LPAL 384
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 25.5 bits (56), Expect = 7.2
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLT-NLDTPAFTLED 217
P+N V T S+ +S T +F ++ + + +NLT ++ L
Sbjct: 4 APKNLVVSEVTEDSLRLSWTA--PDAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTG 61
Query: 218 LGLDGTVLMRVVISGVNAKGRSLPV 242
L GT V I GV RS P+
Sbjct: 62 L-KPGTEY-TVSIYGVKGGHRSNPL 84
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 26.8 bits (58), Expect = 7.8
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTL 191
S + S PG + +TL
Sbjct: 98 ESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTL 132
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 25.5 bits (56), Expect = 8.9
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 10/101 (9%)
Query: 141 GTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN 200
G+ + P V + T +S+ IS Y + Y + +
Sbjct: 2 GSGSSV----------SSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGD 51
Query: 201 LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
V + T GL V + + +
Sbjct: 52 SPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYE 92
>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat,
sushi, complement control protein, N glycosylation,
multi-domain, membrane adhesion; HET: NAG MAN; 2.70A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A
Length = 319
Score = 26.5 bits (58), Expect = 9.6
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 155 GKPQPPQNCSVRNETT---SSVHISCTPGY 181
+N +VR T +++ SC G+
Sbjct: 66 PFAGILENGAVRYTTFEYPNTISFSCNTGF 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.381
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,755,052
Number of extensions: 212499
Number of successful extensions: 1354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 535
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)