BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11551
(705 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/109 (75%), Positives = 90/109 (82%)
Query: 234 AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEP 293
+ FNNEL ADV FVVG G T+T+PAHKYVLA GSSVFYA FYG LAE K EI +PDVEP
Sbjct: 1 SXFNNELXADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAXFYGDLAEVKSEIHIPDVEP 60
Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 342
+AFL LLKY Y D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 61 AAFLILLKYXYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/98 (70%), Positives = 76/98 (77%), Gaps = 9/98 (9%)
Query: 5 TQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLY 64
T+T+PAHKYVLA GSSVFYA FYG LAE K EI +PDVEP+AFL LLKY Y
Sbjct: 21 TRTVPAHKYVLAVGSSVFYAXFYGD---------LAEVKSEIHIPDVEPAAFLILLKYXY 71
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 102
D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 72 SDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 36/42 (85%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 552
+Y Y D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 68 KYXYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 255 QTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEVPDVEPSAFLTLLKYLYCD---DIQL 310
Q AHK +LA S VF AMF + E+K+ +E+ DVEP F ++ ++Y ++
Sbjct: 184 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK 243
Query: 311 EADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVI 370
AD +LA A KY + L C L ++L+ +NA +L + L L + + I
Sbjct: 244 MADDLLAA---ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 300
Query: 371 DAQAEMALKSEG 382
+ A L++ G
Sbjct: 301 NYHATDVLETSG 312
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q AHK +LA S VF AMF + K +E+ DVEP F ++ ++Y
Sbjct: 184 QEFQAHKAILAARSPVFSAMF--------EHEMEESKKNRVEINDVEPEVFKEMMCFIYT 235
Query: 66 D---DIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 111
++ AD +LA A KY + L C L ++L+ +NA +L
Sbjct: 236 GKAPNLDKMADDLLAA---ADKYALERLKVMCEDALCSNLSVENAAEIL 281
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 13/215 (6%)
Query: 240 LMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEV------PDVE 292
L D+ G +G + AH+ VLA + F + G +E++ +E+ P E
Sbjct: 49 LFCDITLCFGGAG-GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE 107
Query: 293 PSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLS 352
P +++Y+Y I++ +V L +A ++++ L C +L+ L N + S
Sbjct: 108 PDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS 167
Query: 353 QSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFA--RETLNCKEMHLFEA 410
+ ++ L + ++I ++ E F + + + T++ +E+ LFE
Sbjct: 168 LAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEV-LFET 226
Query: 411 ALNWA--NAECVRRDLEPTAHNKRLVLGNALYLVR 443
L W NAE R E RL YL R
Sbjct: 227 VLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTR 261
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 10 AHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQ 69
AH+ VLA + F + G G E ++ P EP +++Y+Y I+
Sbjct: 67 AHRSVLAAATEYFTPLLSGQFSE--SRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR 124
Query: 70 LEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLF 117
+ +V L +A ++++ L C +L+ L N + S + ++
Sbjct: 125 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 172
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 255 QTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEVPDVEPSAFLTLLKYLYCD---DIQL 310
Q AHK +LA S VF AMF + E+K+ +E+ DVEP F ++ ++Y ++
Sbjct: 35 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK 94
Query: 311 EADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 351
AD +LA A KY + L C L ++L+ +NA +L
Sbjct: 95 MADDLLAA---ADKYALERLKVMCEDALCSNLSVENAAEIL 132
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q AHK +LA S VF AMF K +E+ DVEP F ++ ++Y
Sbjct: 35 QEFQAHKAILAARSPVFSAMFEHEMEE--------SKKNRVEINDVEPEVFKEMMCFIYT 86
Query: 66 D---DIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 111
++ AD +LA A KY + L C L ++L+ +NA +L
Sbjct: 87 GKAPNLDKMADDLLAA---ADKYALERLKVMCEDALCSNLSVENAAEIL 132
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 239 ELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEV-PDVEPSAFL 297
+++ DV VV + AHK VL S +FY++F L N I + P++ P F
Sbjct: 27 DILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFN 82
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 341
LL ++Y + L ++A + A + H+ C +++ S
Sbjct: 83 ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 10 AHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEV-PDVEPSAFLTLLKYLYCDDI 68
AHK VL S +FY+ I+ L N I + P++ P F LL ++Y +
Sbjct: 43 AHKTVLMACSGLFYS---------IFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL 93
Query: 69 QLEADTVLATLYVAKKYIVPHLARACVTYLETS 101
L ++A + A + H+ C +++ S
Sbjct: 94 NLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 239 ELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEV-PDVEPSAFL 297
+++ DV VV + AHK VL S +FY++F L N I + P++ P F
Sbjct: 30 DILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFC 85
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 341
LL ++Y + L ++A + A + H+ C +++ S
Sbjct: 86 ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 129
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 10 AHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEV-PDVEPSAFLTLLKYLYCDDI 68
AHK VL S +FY+ I+ L N I + P++ P F LL ++Y +
Sbjct: 46 AHKTVLMACSGLFYS---------IFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRL 96
Query: 69 QLEADTVLATLYVAKKYIVPHLARACVTYLETS 101
L ++A + A + H+ C +++ S
Sbjct: 97 NLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 129
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 13/215 (6%)
Query: 240 LMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYG-------GLAENKEEIEVPDVE 292
L D+ G +G + AH+ VLA + F + G G E ++ P E
Sbjct: 31 LFCDITLCFGGAG-GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPE 89
Query: 293 PSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLS 352
P +++Y Y I++ +V L +A ++++ L C +L+ L N + S
Sbjct: 90 PDTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS 149
Query: 353 QSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFA--RETLNCKEMHLFEA 410
+ + L + + I ++ E F + + + T++ +E+ LFE
Sbjct: 150 LAHXYTLSQLALKAADXIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEV-LFET 208
Query: 411 ALNWA--NAECVRRDLEPTAHNKRLVLGNALYLVR 443
L W NAE R E RL YL R
Sbjct: 209 VLKWVQRNAEERERYFEELFKLLRLSQXKPTYLTR 243
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 10 AHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQ 69
AH+ VLA + F + G G E ++ P EP +++Y Y I+
Sbjct: 49 AHRSVLAAATEYFTPLLSGQFSE--SRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIR 106
Query: 70 LEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLS 112
+ +V L +A ++++ L C +L+ L N + S
Sbjct: 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS 149
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 255 QTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEVPDVEPSAFLTLLKYLYCDDIQLEAD 313
Q AHK +LA S VF A F E+K+ +E+ DVEP F ++Y
Sbjct: 44 QEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXXCFIYTGKAPNLDK 103
Query: 314 TVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQ 373
L A KY + L C L ++L+ +NA +L + L L + + I+
Sbjct: 104 XADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYH 163
Query: 374 AEMALKSEG 382
A L++ G
Sbjct: 164 ATDVLETSG 172
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q AHK +LA S VF A F + K +E+ DVEP F ++Y
Sbjct: 44 QEFQAHKAILAARSPVFSAXF--------EHEXEESKKNRVEINDVEPEVFKEXXCFIYT 95
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQR 125
L A KY + L C L ++L+ +NA +L + L L +
Sbjct: 96 GKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQ 155
Query: 126 CWEVID 131
+ I+
Sbjct: 156 AVDFIN 161
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 241 MADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLL 300
+ DV +V S Q AH+ VLA S +F +F+ N + + + P F +L
Sbjct: 28 LCDVVIMVDS----QEFHAHRTVLACTSKMFEILFH----RNSQHYTLDFLSPKTFQQIL 79
Query: 301 KYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 340
+Y Y +Q +A+ + LY A+ + +L C+ LET
Sbjct: 80 EYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 5 TQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLY 64
+Q AH+ VLA S +F +F+ N + + + P F +L+Y Y
Sbjct: 37 SQEFHAHRTVLACTSKMFEILFH-------------RNSQHYTLDFLSPKTFQQILEYAY 83
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 100
+Q +A+ + LY A+ + +L C+ LET
Sbjct: 84 TATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
Query: 255 QTIPAHKYVLATGSS-VFYAMFYGGLAENKE--EIEVPDVEPSAFLTLLKYLYCDDIQLE 311
+ IP K +LA S + + Y ++ +IE+ + +L Y++ I+L
Sbjct: 41 EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXVXREILDYIFSGQIRLN 100
Query: 312 ADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVID 371
DT+ + A ++ L C +LE + A+N + + + + E ++
Sbjct: 101 EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLE 160
Query: 372 AQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNW 414
+E F+++ L+ V + E LN E ++FEA + W
Sbjct: 161 THFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRW 204
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPD 571
Y++ I+L DT+ + A ++ L C +LE + A+N + + +
Sbjct: 91 YIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHH 150
Query: 572 LMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNW 624
+ E ++ +E F+++ L+ V + E LN E ++FEA + W
Sbjct: 151 VHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRW 204
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 240 LMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEI-EVPDVEPSAFLT 298
L+ DV +V + P H+ VLA S F +F G +++ + E+ V A
Sbjct: 34 LLCDVVILV----EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTA 89
Query: 299 LLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 342
L+ + Y + + V L A+ +P ++ C L+ +
Sbjct: 90 LMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLDRQI 133
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 9 PAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDI 68
P H+ VLA S F +F G + + + E+ V A L+ + Y +
Sbjct: 48 PTHRSVLAACSQYFKKLFTS--------GAVVDQQNVYEIDFVSAEALTALMDFAYTATL 99
Query: 69 QLEADTVLATLYVAKKYIVPHLARACVTYLETSL 102
+ V L A+ +P ++ C L+ +
Sbjct: 100 TVSTANVGDILSAARLLEIPAVSHVCADLLDRQI 133
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 241 MADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLL 300
+ DV +V S Q AH+ VLA S +F +F+ N + + + P F +L
Sbjct: 27 LCDVVIMVDS----QEFHAHRTVLACTSKMFEILFH----RNSQHYTLDFLSPKTFQQIL 78
Query: 301 KYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 338
+Y Y +Q +A+ + LY A+ + +L C+ L
Sbjct: 79 EYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 116
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 5 TQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLY 64
+Q AH+ VLA S +F +F+ N + + + P F +L+Y Y
Sbjct: 36 SQEFHAHRTVLACTSKMFEILFH-------------RNSQHYTLDFLSPKTFQQILEYAY 82
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 98
+Q +A+ + LY A+ + +L C+ L
Sbjct: 83 TATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 116
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 240 LMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEI-EVPDVEPSAFLT 298
L+ DV +V + P H+ VLA S F +F G +++ + E+ V A
Sbjct: 24 LLCDVVILV----EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTA 79
Query: 299 LLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 339
L+ + Y + + V L A+ +P ++ C L+
Sbjct: 80 LMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLD 120
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 241 MADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLL 300
+ D VGS Q PAH VLA S L E + PS F LL
Sbjct: 30 LCDTLITVGS----QEFPAHSLVLAGVSQQLGRRGQWALGEG--------ISPSTFAQLL 77
Query: 301 KYLYCDDIQLEADTVLATLYVAKKYIVPHLARAC 334
++Y + ++L+ + A+ V L AC
Sbjct: 78 NFVYGESVELQPGELRPLQEAARALGVQSLEEAC 111
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 259 AHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLAT 318
AH+ VLA+ S F A+ Y +EN ++ V+ F LL+++Y + L++ V
Sbjct: 36 AHRNVLASFSEYFGAI-YRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEI 94
Query: 319 LYVAKKYIVPHLARACVTYLE 339
A V + C +E
Sbjct: 95 HQAADYLKVEEVVTKCKIKME 115
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 240 LMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVP-DVEPSAFLT 298
L DV VV GH AH+ VLA SS F +F +E+P V+P +F
Sbjct: 32 LYCDVSVVV--KGHA--FKAHRAVLAASSSYFRDLFNN---SRSAVVELPAAVQPQSFQQ 84
Query: 299 LLKYLYCDDIQLEADTVLATLYVA 322
+L + Y + + +Y A
Sbjct: 85 ILSFCYTGRLSMNVGDQDLLMYTA 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,374,432
Number of Sequences: 62578
Number of extensions: 758415
Number of successful extensions: 1615
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 43
length of query: 705
length of database: 14,973,337
effective HSP length: 106
effective length of query: 599
effective length of database: 8,340,069
effective search space: 4995701331
effective search space used: 4995701331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)