Query psy11551
Match_columns 705
No_of_seqs 586 out of 4220
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:24:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 2E-40 4.3E-45 369.1 24.6 303 218-533 13-339 (571)
2 PHA02713 hypothetical protein; 100.0 1.6E-37 3.4E-42 347.8 22.3 231 223-470 7-243 (557)
3 KOG2075|consensus 100.0 5.2E-37 1.1E-41 311.8 19.8 308 216-524 89-404 (521)
4 PHA03098 kelch-like protein; P 100.0 1.6E-35 3.6E-40 334.5 21.7 217 238-470 6-231 (534)
5 PHA02790 Kelch-like protein; P 100.0 6.8E-35 1.5E-39 322.2 19.4 210 227-454 8-223 (480)
6 KOG4350|consensus 100.0 5.1E-34 1.1E-38 282.1 14.5 231 225-471 28-262 (620)
7 KOG2075|consensus 99.9 3E-27 6.6E-32 240.9 10.8 197 508-704 173-372 (521)
8 KOG0783|consensus 99.9 7.3E-27 1.6E-31 249.2 11.8 289 1-393 563-866 (1267)
9 KOG4350|consensus 99.9 6.1E-26 1.3E-30 225.0 9.1 165 509-685 99-266 (620)
10 PHA03098 kelch-like protein; P 99.9 9.1E-24 2E-28 238.9 13.6 166 508-682 61-233 (534)
11 KOG4441|consensus 99.9 1.5E-23 3.2E-28 234.1 14.4 184 508-700 90-281 (571)
12 PHA02713 hypothetical protein; 99.9 1.5E-22 3.2E-27 227.3 11.3 162 508-682 81-245 (557)
13 PHA02790 Kelch-like protein; P 99.8 5.8E-21 1.2E-25 211.4 11.6 144 508-664 76-223 (480)
14 KOG4591|consensus 99.8 1.4E-19 3.1E-24 163.5 11.1 174 224-401 49-224 (280)
15 KOG4682|consensus 99.8 4.2E-19 9.1E-24 177.2 14.1 231 230-465 58-320 (488)
16 PF07707 BACK: BTB And C-termi 99.8 4.9E-19 1.1E-23 153.8 4.7 102 557-667 1-103 (103)
17 PF00651 BTB: BTB/POZ domain; 99.7 1E-17 2.2E-22 147.7 10.1 107 232-341 1-110 (111)
18 smart00875 BACK BTB And C-term 99.7 1.5E-16 3.2E-21 137.6 9.5 98 557-664 1-99 (101)
19 PF07707 BACK: BTB And C-termi 99.6 1.4E-16 3E-21 138.4 6.1 102 347-457 1-103 (103)
20 KOG0783|consensus 99.6 3.2E-16 7E-21 168.5 7.0 288 225-605 538-868 (1267)
21 smart00225 BTB Broad-Complex, 99.6 8.4E-15 1.8E-19 123.2 9.1 89 243-335 1-90 (90)
22 smart00875 BACK BTB And C-term 99.5 5E-14 1.1E-18 121.7 10.0 98 347-454 1-99 (101)
23 KOG0511|consensus 99.5 8.4E-14 1.8E-18 138.2 12.7 276 4-388 158-444 (516)
24 KOG4591|consensus 99.5 2.7E-14 5.8E-19 129.6 7.6 118 5-133 78-197 (280)
25 PF00651 BTB: BTB/POZ domain; 99.5 3.5E-14 7.6E-19 125.0 7.7 93 1-101 15-110 (111)
26 KOG2838|consensus 99.5 9.5E-14 2.1E-18 132.0 9.5 64 1-70 135-198 (401)
27 smart00225 BTB Broad-Complex, 99.5 1.9E-13 4.2E-18 114.8 8.2 87 1-95 4-90 (90)
28 KOG4682|consensus 99.0 4.3E-10 9.3E-15 113.4 7.2 166 510-675 128-320 (488)
29 KOG0511|consensus 99.0 4.5E-10 9.8E-15 112.0 5.8 315 241-627 149-470 (516)
30 KOG2838|consensus 98.8 2.6E-08 5.7E-13 95.3 11.3 83 224-310 113-198 (401)
31 KOG2716|consensus 97.6 0.00031 6.7E-09 68.2 9.5 93 244-341 7-104 (230)
32 KOG2716|consensus 97.5 0.00029 6.2E-09 68.4 7.9 94 1-101 9-104 (230)
33 PF11822 DUF3342: Domain of un 97.2 0.00024 5.2E-09 71.9 3.8 98 244-341 1-103 (317)
34 PF02214 BTB_2: BTB/POZ domain 97.1 0.00056 1.2E-08 57.8 3.7 86 244-334 1-94 (94)
35 KOG3473|consensus 97.1 0.0032 7E-08 51.1 7.7 80 244-327 19-112 (112)
36 KOG1987|consensus 97.0 0.00036 7.7E-09 72.8 2.8 125 255-379 110-240 (297)
37 PF02214 BTB_2: BTB/POZ domain 96.9 0.00072 1.6E-08 57.1 2.8 88 1-94 3-94 (94)
38 smart00512 Skp1 Found in Skp1 96.8 0.0062 1.3E-07 52.5 7.8 80 244-327 4-104 (104)
39 KOG1987|consensus 96.6 0.0011 2.4E-08 69.2 2.2 120 5-132 109-231 (297)
40 smart00512 Skp1 Found in Skp1 95.5 0.043 9.3E-07 47.2 6.5 56 3-66 9-64 (104)
41 PF03931 Skp1_POZ: Skp1 family 95.4 0.085 1.8E-06 40.5 7.3 57 244-305 3-59 (62)
42 KOG1724|consensus 95.2 0.15 3.2E-06 47.2 9.3 88 254-342 14-127 (162)
43 KOG2714|consensus 94.8 0.093 2E-06 54.9 7.6 84 244-332 13-102 (465)
44 PF03931 Skp1_POZ: Skp1 family 94.6 0.099 2.1E-06 40.1 5.6 52 3-65 8-59 (62)
45 PF11822 DUF3342: Domain of un 94.3 0.029 6.4E-07 57.1 2.7 113 6-125 14-137 (317)
46 KOG3473|consensus 94.1 0.19 4.2E-06 41.0 6.4 75 4-86 25-111 (112)
47 KOG2714|consensus 93.9 0.12 2.7E-06 54.0 6.3 85 1-92 15-102 (465)
48 KOG1724|consensus 93.8 0.32 6.9E-06 45.0 8.3 91 3-102 12-127 (162)
49 KOG1665|consensus 92.7 0.4 8.7E-06 45.7 7.1 89 244-336 11-105 (302)
50 KOG2715|consensus 90.3 0.97 2.1E-05 41.1 6.6 97 242-342 21-122 (210)
51 COG5201 SKP1 SCF ubiquitin lig 89.5 2.8 6.2E-05 36.4 8.5 95 243-342 3-122 (158)
52 KOG1778|consensus 89.2 0.34 7.4E-06 50.0 3.5 129 255-384 36-168 (319)
53 KOG1665|consensus 88.8 1 2.2E-05 43.1 5.9 90 1-96 13-105 (302)
54 KOG2715|consensus 86.1 1.5 3.3E-05 39.9 5.2 96 1-101 25-121 (210)
55 PF01466 Skp1: Skp1 family, di 84.7 1.7 3.7E-05 35.0 4.5 35 309-343 10-44 (78)
56 KOG1778|consensus 80.3 1.2 2.7E-05 46.0 2.6 119 4-131 34-155 (319)
57 PF01466 Skp1: Skp1 family, di 76.2 3 6.5E-05 33.6 3.2 38 520-557 11-48 (78)
58 COG5201 SKP1 SCF ubiquitin lig 75.8 10 0.00023 33.0 6.4 88 3-101 9-121 (158)
59 KOG2723|consensus 60.2 29 0.00064 33.9 6.8 92 240-336 6-104 (221)
60 KOG3840|consensus 45.6 94 0.002 31.6 7.7 85 240-328 94-185 (438)
61 KOG2723|consensus 44.4 34 0.00073 33.5 4.5 86 1-93 13-101 (221)
62 KOG3840|consensus 31.0 52 0.0011 33.4 3.4 80 2-88 101-185 (438)
No 1
>KOG4441|consensus
Probab=100.00 E-value=2e-40 Score=369.12 Aligned_cols=303 Identities=23% Similarity=0.333 Sum_probs=267.0
Q ss_pred CCCCCCChhhHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHH
Q psy11551 218 DPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAF 296 (705)
Q Consensus 218 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f 296 (705)
.+....+...+.+.++.++..+.+|||++.+++ ++|+|||.||||+|+||++||+++++|+. .+|++.++++.++
T Consensus 13 ~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~----~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l 88 (571)
T KOG4441|consen 13 EFTDPSHSKFLLQGLNELREEGLLCDVTLLVGD----REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETL 88 (571)
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCceEEEEECC----eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHH
Confidence 455567899999999999999999999999999 99999999999999999999999999999 9999999999999
Q ss_pred HHHHHhHccCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy11551 297 LTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEM 376 (705)
Q Consensus 297 ~~lL~yiYt~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~ 376 (705)
+.+++|+||+++.++.+|+.+++.+|++||++.+.+.|++||.++++++||+.+..+|+.|++.+|.+.+..|+.+||.+
T Consensus 89 ~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~ 168 (571)
T KOG4441|consen 89 ELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAE 168 (571)
T ss_pred HHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccccCCHHHHHhccccCCccc-ChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHHHHHHh
Q psy11551 377 ALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 455 (705)
Q Consensus 377 v~~~~~f~~L~~~~l~~ll~~~~l~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~~l~~~ 455 (705)
+.++++|+.|+.+.+..+|++|.|++ +|.+||+++++|++++ .+.|+.+++.++.+|||++|++.+|.+.
T Consensus 169 v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---------~~~R~~~~~~ll~~vr~~ll~~~~l~~~ 239 (571)
T KOG4441|consen 169 VSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---------FEEREEHLPALLEAVRLPLLPPQFLVEI 239 (571)
T ss_pred HhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---------HhhHHHHHHHHHHhcCccCCCHHHHHHH
Confidence 99999999999999999999999999 7999999999999997 6779999999999999999999999999
Q ss_pred hhhcCCCCch-HHHHH-----HHhhccCCCCCCCCC-CCCCCCCC-------C-----cccccccccccCCCCCCC---c
Q psy11551 456 AAQLGILTLQ-ETIDI-----FLHFTAHNKPHLSYP-VKARAGLK-------P-----QRSVFFVRLTSLFPFPRY---L 513 (705)
Q Consensus 456 v~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~-~~pr~~~~-------~-----~~~~~~~~~~~~~~~~~y---~ 513 (705)
+...++++.+ +|.+. .+|..|..++.++.+ ++||++.. + +.+..+.+||+.++.|.. +
T Consensus 240 v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m 319 (571)
T KOG4441|consen 240 VESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM 319 (571)
T ss_pred HhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC
Confidence 9999988865 44443 377888888766654 88995322 1 223455588999988887 4
Q ss_pred cccceeeccchhhhHHHhhc
Q psy11551 514 YCDDIQLEADTVLATLYVAK 533 (705)
Q Consensus 514 y~~~~~~~~~~~~~~l~~A~ 533 (705)
........+..+...++++.
T Consensus 320 ~~~r~~~~~~~~~~~lYv~G 339 (571)
T KOG4441|consen 320 PSPRCRVGVAVLNGKLYVVG 339 (571)
T ss_pred CcccccccEEEECCEEEEEc
Confidence 44444444444444444443
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=347.81 Aligned_cols=231 Identities=14% Similarity=0.248 Sum_probs=211.1
Q ss_pred CChhhHHHHHHHHHcCCCCccEEEEeC-CCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc--ceEEcCCCCHHHHHHH
Q psy11551 223 ASKPTVRERNAAMFNNELMADVKFVVG-SSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK--EEIEVPDVEPSAFLTL 299 (705)
Q Consensus 223 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~--~~i~l~~v~~~~f~~l 299 (705)
.|...++..+++|+.++.+|||+|.++ + +.|+|||+||||+|+||++||+++|+|+. .+|+|+++++++|+.+
T Consensus 7 ~h~~~~l~~l~~lr~~~~l~DV~L~v~~~----~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l 82 (557)
T PHA02713 7 KHNRRVVSNISNLLDDDILCDVIITIGDG----EEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI 82 (557)
T ss_pred hhhHHHHHHHHHHHhCCCCCCEEEEeCCC----CEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence 577889999999999999999999998 5 89999999999999999999999999753 8899999999999999
Q ss_pred HHhHccCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhC
Q psy11551 300 LKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALK 379 (705)
Q Consensus 300 L~yiYt~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~ 379 (705)
|+|+|||+ ++.+|+.++|.+|++||++.|++.|++||.+.++++||+.++..+..+.+..|.+.|.+||.+||.++.+
T Consensus 83 l~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~ 160 (557)
T PHA02713 83 VQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT 160 (557)
T ss_pred HHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC
Confidence 99999997 7899999999999999999999999999999999999999999899899989999999999999999999
Q ss_pred CcccccCCHHHHHhccccCC-ccc-ChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHHHHHHhhh
Q psy11551 380 SEGFVDIDMSTLESVFARET-LNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAA 457 (705)
Q Consensus 380 ~~~f~~L~~~~l~~ll~~~~-l~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~~l~~~v~ 457 (705)
+++|.+|+.+.+.++|++|+ |++ +|++||+|+++|++|+ .+.|+ .+.+||++|||++|++.++. .+.
T Consensus 161 ~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---------~~~r~-~~~~ll~~VR~~~l~~~~~~-~~~ 229 (557)
T PHA02713 161 TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---------YITEE-QLLCILSCIDIQNLDKKSRL-LLY 229 (557)
T ss_pred ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---------HHHHH-HHhhhHhhhhHhhcchhhhh-hhc
Confidence 99999999999999999988 788 7999999999999997 44454 46699999999999999876 566
Q ss_pred hcCCCCch-HHHHH
Q psy11551 458 QLGILTLQ-ETIDI 470 (705)
Q Consensus 458 ~~~~~~~~-~~~~~ 470 (705)
..++++.+ +|.+.
T Consensus 230 ~~~~i~~~~~c~~~ 243 (557)
T PHA02713 230 SNKTINMYPSCIQF 243 (557)
T ss_pred chHHHHhhHHHHHH
Confidence 66766644 44443
No 3
>KOG2075|consensus
Probab=100.00 E-value=5.2e-37 Score=311.81 Aligned_cols=308 Identities=54% Similarity=0.843 Sum_probs=289.6
Q ss_pred CCCCCCCCChhhHHHHHHHHHcCCCCccEEEEeCCC-CCceeEeeehhhhhccCHHHHHhhcCCCCCC-cceEEcCCCCH
Q psy11551 216 TGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSS-GHTQTIPAHKYVLATGSSVFYAMFYGGLAEN-KEEIEVPDVEP 293 (705)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~-~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~-~~~i~l~~v~~ 293 (705)
+...+|.....++.++...++++...+|+.|+|++. +..++|||||.|||..|+.|.+||++++.+. ..+|.++|+.+
T Consensus 89 ~~~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvep 168 (521)
T KOG2075|consen 89 RGIPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEP 168 (521)
T ss_pred ccCcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcCh
Confidence 347889999999999999999999999999999853 3458999999999999999999999999999 49999999999
Q ss_pred HHHHHHHHhHccCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHH-HhhcCChHHHHHHHHHHHH
Q psy11551 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQ-SRLFEEPDLMQRCWEVIDA 372 (705)
Q Consensus 294 ~~f~~lL~yiYt~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~-a~~~~~~~L~~~~~~~i~~ 372 (705)
.+|..+|+|+|++.+.+..++++.++.+|++|.++.|.+.|.+||...+...|.+..+.. |..++-++|...|++-|..
T Consensus 169 aaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~ 248 (521)
T KOG2075|consen 169 AAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDK 248 (521)
T ss_pred hHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999998888776666 9999999999999999999
Q ss_pred HHHHHhCCcccccCC--HHHHHhccccCCcccChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHH
Q psy11551 373 QAEMALKSEGFVDID--MSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLG 450 (705)
Q Consensus 373 ~~~~v~~~~~f~~L~--~~~l~~ll~~~~l~v~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~ 450 (705)
++...+..+.|.+.. .+.++++|+++.+.++|..+|+|+++|++..|.|++.+.+.++++..++..+..||||.|..+
T Consensus 249 ~~~~al~~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~E 328 (521)
T KOG2075|consen 249 SFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIE 328 (521)
T ss_pred HHHhhhCccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccchh
Confidence 999999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCchHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc--ccccccccCCCCCCC-ccccceeeccch
Q psy11551 451 EFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRS--VFFVRLTSLFPFPRY-LYCDDIQLEADT 524 (705)
Q Consensus 451 ~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~~~~~~~~--~~~~~~~~~~~~~~y-~y~~~~~~~~~~ 524 (705)
++...++++++....+..+++.|++...+|.+++..+||.+.+.+.| ++|+....|. +|+| ++++.|++.++.
T Consensus 329 efa~~~e~sgIl~d~e~~~~F~~~t~~P~P~l~f~~~~ra~ls~~~~~~~rfqr~~~R~-q~~~~g~~D~i~F~vd~ 404 (521)
T KOG2075|consen 329 EFARGVEQSGILTDREPLKLFLYFTAAPKPALDFVSRPRAGLSHKKLVRARFQRSETRQ-QWRYRGTSDRITFQVDR 404 (521)
T ss_pred hhccCccccCCccccchHhhhhhhccCCCccccccCcccccccccccchhhhhcchhhh-hhccccccccceeeeee
Confidence 99999999999998888888899998889999999999999998887 8888888888 9999 889999988877
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=334.53 Aligned_cols=217 Identities=21% Similarity=0.358 Sum_probs=203.1
Q ss_pred CCCCccEEEEe--CCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCcceEEcCCCCHHHHHHHHHhHccCCccCChhhH
Q psy11551 238 NELMADVKFVV--GSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTV 315 (705)
Q Consensus 238 ~~~~~Dv~l~v--~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~v 315 (705)
++.+|||+|.+ +| ++|+|||.||+++|+||++||.++|. ..+|.+++ ++++|+.+|+|+|||++.++.+++
T Consensus 6 ~~~~~Dv~l~~~~~~----~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGG----GIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKINITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCC----EEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceEEcHHHH
Confidence 78999999998 66 99999999999999999999999988 56889999 999999999999999999999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCcccccCCHHHHHhcc
Q psy11551 316 LATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVF 395 (705)
Q Consensus 316 ~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~~l~~ll 395 (705)
.+++.+|++|+++.|+..|++||.+.++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+.+.+..+|
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll 158 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKIL 158 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccc-ChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHHHHHHhhh------hcCCCCchHHH
Q psy11551 396 ARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAA------QLGILTLQETI 468 (705)
Q Consensus 396 ~~~~l~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~~l~~~v~------~~~~~~~~~~~ 468 (705)
++|.|++ +|.+||+++++|++++ .++|.+++.+||++|||++|++++|.+.+. ...++.++.|.
T Consensus 159 ~~~~L~v~~E~~v~~av~~W~~~~---------~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (534)
T PHA03098 159 SDDKLNVSSEDVVLEIIIKWLTSK---------KNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCI 229 (534)
T ss_pred cCCCcCcCCHHHHHHHHHHHHhcC---------hhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccch
Confidence 9999999 7999999999999987 678899999999999999999999998765 55565444444
Q ss_pred HH
Q psy11551 469 DI 470 (705)
Q Consensus 469 ~~ 470 (705)
..
T Consensus 230 ~~ 231 (534)
T PHA03098 230 KI 231 (534)
T ss_pred HH
Confidence 43
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=322.22 Aligned_cols=210 Identities=13% Similarity=0.177 Sum_probs=189.8
Q ss_pred hHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCcceEEc--CCCCHHHHHHHHHhHc
Q psy11551 227 TVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEV--PDVEPSAFLTLLKYLY 304 (705)
Q Consensus 227 ~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~~~i~l--~~v~~~~f~~lL~yiY 304 (705)
..-+.+-.++.++.+|||++.+| +.|+|||+|||++|+||++||+++|.|+..++.+ .++++++|+.+|+|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~Y 82 (480)
T PHA02790 8 VYCKNILALSMTKKFKTIIEAIG-----GNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSY 82 (480)
T ss_pred hhhhhHHHHHhhhhhceEEEEcC-----cEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhhe
Confidence 34456777889999999999876 5899999999999999999999999998854554 4899999999999999
Q ss_pred cCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCC--cc
Q psy11551 305 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKS--EG 382 (705)
Q Consensus 305 t~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~--~~ 382 (705)
||++.++.+||++++.+|++||++.+++.|++||.+.++++||+.++.+|+.|++.+|.+.+.+||.+||.++.++ ++
T Consensus 83 Tg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~e 162 (480)
T PHA02790 83 TGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDN 162 (480)
T ss_pred eeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred cccCCHHHHHhccccCCccc-ChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcc-cccCCCCHHHHHH
Q psy11551 383 FVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYL-VRIPTMSLGEFAN 454 (705)
Q Consensus 383 f~~L~~~~l~~ll~~~~l~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~-vRf~~m~~~~l~~ 454 (705)
|..|+. .+||++|+|++ +|++||+|+++|++++ ..|...+.+++.+ ||+++|++..+.+
T Consensus 163 f~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----------~~~~~~l~~~vr~~ir~~~l~~~~l~~ 223 (480)
T PHA02790 163 FDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----------RNRLGNLLLLIKNVIRSNYLSPRGINN 223 (480)
T ss_pred hhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----------HHHHHHHHHHHHhcCChhhCCHHHHHH
Confidence 999995 68999999999 7999999999999974 3455566666666 8999999888754
No 6
>KOG4350|consensus
Probab=100.00 E-value=5.1e-34 Score=282.14 Aligned_cols=231 Identities=30% Similarity=0.533 Sum_probs=216.8
Q ss_pred hhhHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHHHHHHHhH
Q psy11551 225 KPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAFLTLLKYL 303 (705)
Q Consensus 225 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f~~lL~yi 303 (705)
...+.+++..++-+.+++||+|+|++ ++|+|||.|||+||.|||+|+.+||.|+. ..|.+.+...++|+.+|+||
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~----~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYi 103 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVED----TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYI 103 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEec----cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHH
Confidence 44567889999999999999999999 99999999999999999999999999999 89999999999999999999
Q ss_pred ccCCccC---ChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCC
Q psy11551 304 YCDDIQL---EADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKS 380 (705)
Q Consensus 304 Yt~~~~i---~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~ 380 (705)
|||++.+ ..+...+.|.+|++|++..|.....+|+.+.+..+|+|.++..|..|+..+|.+.|+.|+.+|..+++..
T Consensus 104 Ytg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~ 183 (620)
T KOG4350|consen 104 YTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLED 183 (620)
T ss_pred hhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcC
Confidence 9999875 5577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHHHHhccccCCcccChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHHHHHHhhhhcC
Q psy11551 381 EGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLG 460 (705)
Q Consensus 381 ~~f~~L~~~~l~~ll~~~~l~v~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~~l~~~v~~~~ 460 (705)
+.|..|+.+.|++++.+|.....|.++|.|+..|.++| -......+++.||+|+|+..+|.+.|.+++
T Consensus 184 ~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~N------------ske~~k~~~~~VRLPLm~lteLLnvVRPsG 251 (620)
T KOG4350|consen 184 PSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNN------------SKEASKVLLELVRLPLMTLTELLNVVRPSG 251 (620)
T ss_pred cchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcC------------chhhHHHHHHHHhhhhccHHHHHhccCccc
Confidence 99999999999999999999999999999999999986 134567789999999999999999999999
Q ss_pred CCCchHHHHHH
Q psy11551 461 ILTLQETIDIF 471 (705)
Q Consensus 461 ~~~~~~~~~~~ 471 (705)
++.++...+..
T Consensus 252 llspD~iLDAI 262 (620)
T KOG4350|consen 252 LLSPDTILDAI 262 (620)
T ss_pred CcCHHHHHHHH
Confidence 99988766653
No 7
>KOG2075|consensus
Probab=99.94 E-value=3e-27 Score=240.86 Aligned_cols=197 Identities=52% Similarity=0.825 Sum_probs=191.8
Q ss_pred CCCCCccccceeeccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHh-hhcCCCchHHHHHHHHHHHHHHH
Q psy11551 508 PFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQ-SRLFEEPDLMQRCWEVIDAQAEM 586 (705)
Q Consensus 508 ~~~~y~y~~~~~~~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~-A~~~~~~~L~~~c~~~i~~n~~~ 586 (705)
..|+|+|++.+.+..++++.+|++|++|.++.|.+.|.+||+..+.++|.|..+-+ |..++.++|.++|++.|+.+|+.
T Consensus 173 ~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~ 252 (521)
T KOG2075|consen 173 AFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFED 252 (521)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHh
Confidence 45899999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred hhCccCccccC--HHHHHHHhhcCCcCcchHHHHHHHHHHHHhhccccCCCCchhhHHHHHhhhhhcccCCCCChHHHHH
Q psy11551 587 ALKSEGFVDID--MSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFAN 664 (705)
Q Consensus 587 v~~~~~F~~L~--~~~l~~il~~d~L~v~E~~vf~av~~W~~~~~~~~~~~~~~~~~~~~l~~ll~~iRfplm~~~~l~~ 664 (705)
.+..+.|.+.. .++++++|.|+.|.++|..+|+|+.+|+..+|.|.+.+.+.++++.+++..+..||||+|..++++.
T Consensus 253 al~~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~ 332 (521)
T KOG2075|consen 253 ALTPEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFAR 332 (521)
T ss_pred hhCccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccchhhhcc
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhCCCChHHHHHHHhhhccCCCCCCCCCCCCCCCCCC
Q psy11551 665 KAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKP 704 (705)
Q Consensus 665 ~v~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~~~~ 704 (705)
.++++|+++..+.+++++|++..++|...|..++|+|++.
T Consensus 333 ~~e~sgIl~d~e~~~~F~~~t~~P~P~l~f~~~~ra~ls~ 372 (521)
T KOG2075|consen 333 GVEQSGILTDREPLKLFLYFTAAPKPALDFVSRPRAGLSH 372 (521)
T ss_pred CccccCCccccchHhhhhhhccCCCccccccCcccccccc
Confidence 9999999999999999999988889999999999999875
No 8
>KOG0783|consensus
Probab=99.94 E-value=7.3e-27 Score=249.15 Aligned_cols=289 Identities=22% Similarity=0.321 Sum_probs=207.5
Q ss_pred CeecCeeeehhHHHHhcCCHHHHHhhcCCCC----CccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCC--hhh
Q psy11551 1 MIRHTQTIPAHKYVLATGSSVFYAMFYGGTY----NLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLE--ADT 74 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLaarS~~F~~~f~~~~~----~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~--~~~ 74 (705)
|.||+..|+|||+|||+||+||+++|...-. +.++.+....+...|.+++++|..|+.+|+||||++.--+ +++
T Consensus 563 f~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDd 642 (1267)
T KOG0783|consen 563 FYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDD 642 (1267)
T ss_pred EEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCCccccc
Confidence 4699999999999999999999999976311 1223333333446678999999999999999999975322 232
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhcCCCCCccccccccccchhhhh
Q psy11551 75 VLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINE 154 (705)
Q Consensus 75 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 154 (705)
+.-+ + |. .++..- .-.+..|..+..+++++++.+|......+...+.+.
T Consensus 643 idci---~--fs--~~k~N~------~qrtrtCeMl~~~lekf~l~el~~~~~s~~~~~~~~------------------ 691 (1267)
T KOG0783|consen 643 IDCI---R--FS--PLKENL------SQRTRTCEMLANLLEKFHLAELLPFSVSRQPLLSLT------------------ 691 (1267)
T ss_pred hhhh---h--cc--ccccCh------hhcccHHHHHHHHHhhhhHHhhhhhhhhccchhhcc------------------
Confidence 2110 0 00 000000 013445666777788888777776644333211100
Q ss_pred hhhCCCCCCCCCCCCCccchhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHH
Q psy11551 155 TLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAA 234 (705)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 234 (705)
. .....-.+.
T Consensus 692 ------------------------------n----------------------------------------~ia~~~~N~ 701 (1267)
T KOG0783|consen 692 ------------------------------N----------------------------------------DIAQLYNNF 701 (1267)
T ss_pred ------------------------------c----------------------------------------HHHHHhcCe
Confidence 0 000000001
Q ss_pred HH--cCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHHHHHHHhHcc-CCccC
Q psy11551 235 MF--NNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAFLTLLKYLYC-DDIQL 310 (705)
Q Consensus 235 l~--~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f~~lL~yiYt-~~~~i 310 (705)
+. +.+..-|+.|...| |+.++|||++|++|++||..||..-|.|+. -.+....+..+.++.+|+|+|+ ++..+
T Consensus 702 l~lsdh~e~~d~~i~~KD---Gkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~ 778 (1267)
T KOG0783|consen 702 LVLSDHEETMDTVIKLKD---GKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVEL 778 (1267)
T ss_pred eEecCCccceeEEEEecC---CcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHH
Confidence 11 12355677777776 589999999999999999999999999888 5566666779999999999995 44432
Q ss_pred -----ChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCccccc
Q psy11551 311 -----EADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVD 385 (705)
Q Consensus 311 -----~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~ 385 (705)
..+-+.+++.+||.|.+.+|+..|+.-|.+.++..||..++++|..|++.+|+..|++||+.|...++.-.....
T Consensus 779 ~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~ 858 (1267)
T KOG0783|consen 779 FKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISE 858 (1267)
T ss_pred HhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhh
Confidence 445688999999999999999999999999999999999999999999999999999999999998887666666
Q ss_pred CCHHHHHh
Q psy11551 386 IDMSTLES 393 (705)
Q Consensus 386 L~~~~l~~ 393 (705)
++...|+.
T Consensus 859 ~dg~~LK~ 866 (1267)
T KOG0783|consen 859 WDGFHLKK 866 (1267)
T ss_pred hcchHHHH
Confidence 66555544
No 9
>KOG4350|consensus
Probab=99.93 E-value=6.1e-26 Score=225.03 Aligned_cols=165 Identities=27% Similarity=0.473 Sum_probs=155.0
Q ss_pred CCCCccccceeec---cchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy11551 509 FPRYLYCDDIQLE---ADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAE 585 (705)
Q Consensus 509 ~~~y~y~~~~~~~---~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~A~~~~~~~L~~~c~~~i~~n~~ 585 (705)
.|||+|++++.++ .+..++.|.+|++||+++|..+.++||++-|..+|+|.++++|..|+.++|...|+.|+++|+.
T Consensus 99 lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~ 178 (620)
T KOG4350|consen 99 LLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNAD 178 (620)
T ss_pred HHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHH
Confidence 4889999999974 4667999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCccCccccCHHHHHHHhhcCCcCcchHHHHHHHHHHHHhhccccCCCCchhhHHHHHhhhhhcccCCCCChHHHHHH
Q psy11551 586 MALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 665 (705)
Q Consensus 586 ~v~~~~~F~~L~~~~l~~il~~d~L~v~E~~vf~av~~W~~~~~~~~~~~~~~~~~~~~l~~ll~~iRfplm~~~~l~~~ 665 (705)
+++.++.|..||++.|..+|.||.+-..|.+||.||..|.+++. ++..+.+++.||+|||+..+|++.
T Consensus 179 ~lL~~~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~Ns------------ke~~k~~~~~VRLPLm~lteLLnv 246 (620)
T KOG4350|consen 179 QLLEDPSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNNS------------KEASKVLLELVRLPLMTLTELLNV 246 (620)
T ss_pred hhhcCcchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcCc------------hhhHHHHHHHHhhhhccHHHHHhc
Confidence 99999999999999999999999999999999999999988652 366678999999999999999999
Q ss_pred HhHhCCCChHHHHHHHhhhc
Q psy11551 666 AAQLGILTLQETIDIFLHFT 685 (705)
Q Consensus 666 v~~~~l~~~~~~~~~~~~~~ 685 (705)
|+|+||++++.|+|++.--+
T Consensus 247 VRPsGllspD~iLDAI~vrs 266 (620)
T KOG4350|consen 247 VRPSGLLSPDTILDAIEVRS 266 (620)
T ss_pred cCcccCcCHHHHHHHHHhhc
Confidence 99999999999999998543
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=9.1e-24 Score=238.90 Aligned_cols=166 Identities=19% Similarity=0.320 Sum_probs=152.6
Q ss_pred CCCCCccccceeeccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHhhhcCCCchHHHHHHHHHHHHHHHh
Q psy11551 508 PFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMA 587 (705)
Q Consensus 508 ~~~~y~y~~~~~~~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v 587 (705)
..++|+|++.+.++.+++.++|.+|++|+++.|++.|.+||.+.++.+||+.++..|..|++.+|.+.|.+||.+||.+|
T Consensus 61 ~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v 140 (534)
T PHA03098 61 EVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELI 140 (534)
T ss_pred HHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCccCccccCHHHHHHHhhcCCcCc-chHHHHHHHHHHHHhhccccCCCCchhhHHHHHhhhhhcccCCCCChHHHHHHH
Q psy11551 588 LKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKA 666 (705)
Q Consensus 588 ~~~~~F~~L~~~~l~~il~~d~L~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~~~~~l~~ll~~iRfplm~~~~l~~~v 666 (705)
.++++|++|+.+.|..||++|.|+| +|.+||+||++|++|+ .++|+..+.+|+++||||+|++++|.+.+
T Consensus 141 ~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---------~~~r~~~~~~ll~~vR~~~~~~~~l~~~~ 211 (534)
T PHA03098 141 YNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK---------KNNKYKDICLILKVLRITFLSEEGIKKLK 211 (534)
T ss_pred hcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---------hhhhHhHHHHHHhhccccccCHHHHHHHH
Confidence 9999999999999999999999999 9999999999999987 67888999999999999999999998876
Q ss_pred h------HhCCCChHHHHHHHh
Q psy11551 667 A------QLGILTLQETIDIFL 682 (705)
Q Consensus 667 ~------~~~l~~~~~~~~~~~ 682 (705)
. ...++.++.+..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (534)
T PHA03098 212 RWKLRIKKKKIVFNKRCIKIIY 233 (534)
T ss_pred HHHhhcCCcceeccccchHHHH
Confidence 5 444554445555443
No 11
>KOG4441|consensus
Probab=99.90 E-value=1.5e-23 Score=234.10 Aligned_cols=184 Identities=21% Similarity=0.306 Sum_probs=164.8
Q ss_pred CCCCCccccceeeccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHhhhcCCCchHHHHHHHHHHHHHHHh
Q psy11551 508 PFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMA 587 (705)
Q Consensus 508 ~~~~y~y~~~~~~~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v 587 (705)
..+.|.|++++.++.+++.+++.+|.+|+++.+.++|++||.++|+++||+.|..+|..+++.+|.+.+..||.+||.+|
T Consensus 90 ~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v 169 (571)
T KOG4441|consen 90 LLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEV 169 (571)
T ss_pred HHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCccCccccCHHHHHHHhhcCCcCc-chHHHHHHHHHHHHhhccccCCCCchhhHHHHHhhhhhcccCCCCChHHHHHHH
Q psy11551 588 LKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKA 666 (705)
Q Consensus 588 ~~~~~F~~L~~~~l~~il~~d~L~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~~~~~l~~ll~~iRfplm~~~~l~~~v 666 (705)
.++++|+.|+.+.|..+|++|.|+| +|.+||+|+++|++|+ .+.|+.++..++++||||||++.+|.+.|
T Consensus 170 ~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---------~~~R~~~~~~ll~~vr~~ll~~~~l~~~v 240 (571)
T KOG4441|consen 170 SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---------FEEREEHLPALLEAVRLPLLPPQFLVEIV 240 (571)
T ss_pred hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---------HhhHHHHHHHHHHhcCccCCCHHHHHHHH
Confidence 9999999999999999999999999 9999999999999987 56688999999999999999999999999
Q ss_pred hHhCCCChH-HHHHHHh----hhccCCC-C-CCCCCCCCCC
Q psy11551 667 AQLGILTLQ-ETIDIFL----HFTAHNK-P-HLSYPVKARA 700 (705)
Q Consensus 667 ~~~~l~~~~-~~~~~~~----~~~~~~~-p-~~~~~~~~r~ 700 (705)
...+++..+ ++.+++. +...+.. | .....++||+
T Consensus 241 ~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~ 281 (571)
T KOG4441|consen 241 ESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRR 281 (571)
T ss_pred hhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCc
Confidence 999988754 4444443 3322222 2 2356888884
No 12
>PHA02713 hypothetical protein; Provisional
Probab=99.87 E-value=1.5e-22 Score=227.26 Aligned_cols=162 Identities=12% Similarity=0.183 Sum_probs=143.2
Q ss_pred CCCCCccccceeeccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHhhhcCCCchHHHHHHHHHHHHHHHh
Q psy11551 508 PFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMA 587 (705)
Q Consensus 508 ~~~~y~y~~~~~~~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v 587 (705)
..++|+||+. ++.+++.++|.+|++|+++.|+++|++||.++|+++||+.++..|..+...+|.+.|.+||.+||.+|
T Consensus 81 ~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v 158 (557)
T PHA02713 81 NIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTL 158 (557)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 3578999987 68999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred hCccCccccCHHHHHHHhhcCC-cCc-chHHHHHHHHHHHHhhccccCCCCchhhHHHHHhhhhhcccCCCCChHHHHHH
Q psy11551 588 LKSEGFVDIDMSTLESVFARET-LNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 665 (705)
Q Consensus 588 ~~~~~F~~L~~~~l~~il~~d~-L~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~~~~~l~~ll~~iRfplm~~~~l~~~ 665 (705)
.++++|++|+.+.|..||++|+ |+| +|++||+||++|++|+ .++|+ .+.+||++||||+|++..+. .
T Consensus 159 ~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---------~~~r~-~~~~ll~~VR~~~l~~~~~~-~ 227 (557)
T PHA02713 159 ITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---------YITEE-QLLCILSCIDIQNLDKKSRL-L 227 (557)
T ss_pred hCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---------HHHHH-HHhhhHhhhhHhhcchhhhh-h
Confidence 9999999999999999999988 799 9999999999999997 34444 46699999999999998876 5
Q ss_pred HhHhCCCCh-HHHHHHHh
Q psy11551 666 AAQLGILTL-QETIDIFL 682 (705)
Q Consensus 666 v~~~~l~~~-~~~~~~~~ 682 (705)
+...+++.. .++.+.+.
T Consensus 228 ~~~~~~i~~~~~c~~~l~ 245 (557)
T PHA02713 228 LYSNKTINMYPSCIQFLL 245 (557)
T ss_pred hcchHHHHhhHHHHHHHh
Confidence 666666553 35555553
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=99.84 E-value=5.8e-21 Score=211.43 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=131.0
Q ss_pred CCCCCccccceeeccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHhhhcCCCchHHHHHHHHHHHHHHHh
Q psy11551 508 PFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMA 587 (705)
Q Consensus 508 ~~~~y~y~~~~~~~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v 587 (705)
..++|+||+.+.++.+|+.++|.+|++++++.+.++|++||.++|+++||++++.+|..|++.+|.+.|.+||.+||.+|
T Consensus 76 ~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v 155 (480)
T PHA02790 76 SIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLEL 155 (480)
T ss_pred HHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCc--cCccccCHHHHHHHhhcCCcCc-chHHHHHHHHHHHHhhccccCCCCchhhHHHHHhhhhhc-ccCCCCChHHHH
Q psy11551 588 LKS--EGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYL-VRIPTMSLGEFA 663 (705)
Q Consensus 588 ~~~--~~F~~L~~~~l~~il~~d~L~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~~~~~l~~ll~~-iRfplm~~~~l~ 663 (705)
.++ ++|+.|+. ..||++|+|+| +|++||+||++|++|+ .++...+.+++++ ||+++|++..+.
T Consensus 156 ~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----------~~~~~~l~~~vr~~ir~~~l~~~~l~ 222 (480)
T PHA02790 156 EDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----------RNRLGNLLLLIKNVIRSNYLSPRGIN 222 (480)
T ss_pred hcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----------HHHHHHHHHHHHhcCChhhCCHHHHH
Confidence 987 89999995 68999999999 9999999999999974 3344455556665 899999988774
Q ss_pred H
Q psy11551 664 N 664 (705)
Q Consensus 664 ~ 664 (705)
+
T Consensus 223 ~ 223 (480)
T PHA02790 223 N 223 (480)
T ss_pred H
Confidence 3
No 14
>KOG4591|consensus
Probab=99.81 E-value=1.4e-19 Score=163.52 Aligned_cols=174 Identities=24% Similarity=0.371 Sum_probs=154.1
Q ss_pred ChhhHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCcceEEcCCCCHHHHHHHHHhH
Q psy11551 224 SKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYL 303 (705)
Q Consensus 224 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~~~i~l~~v~~~~f~~lL~yi 303 (705)
..+.++.....+++.+.++|++|.++|+. .+.++|||.|||+||++++ |.++-.|...+..+.|+++++|...++||
T Consensus 49 F~SRLLaitadL~Ek~qfSDlk~K~~gns-~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWI 125 (280)
T KOG4591|consen 49 FISRLLAITADLLEKEQFSDLKFKFAGNS-DKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWI 125 (280)
T ss_pred HHHHHHHHHHHHhhcccccceeEEecCCc-cccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheee
Confidence 56778888889999999999999998653 2889999999999999985 45444444477888999999999999999
Q ss_pred ccCCccC--ChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCc
Q psy11551 304 YCDDIQL--EADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSE 381 (705)
Q Consensus 304 Yt~~~~i--~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~ 381 (705)
||+++++ +.+.+.++..+|+.|+++.|++.|++-+...++++||+.+|++|+..+..+|...|...|+.++..+- ..
T Consensus 126 YTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a 204 (280)
T KOG4591|consen 126 YTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KA 204 (280)
T ss_pred eccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hH
Confidence 9999987 45567899999999999999999999999999999999999999999999999999999999998764 57
Q ss_pred ccccCCHHHHHhccccCCcc
Q psy11551 382 GFVDIDMSTLESVFARETLN 401 (705)
Q Consensus 382 ~f~~L~~~~l~~ll~~~~l~ 401 (705)
+|.+++...+..++.+..-+
T Consensus 205 ~FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 205 DFAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred HHHhccHHHHHHHHcCCCcc
Confidence 89999999999999877643
No 15
>KOG4682|consensus
Probab=99.80 E-value=4.2e-19 Score=177.17 Aligned_cols=231 Identities=17% Similarity=0.207 Sum_probs=193.4
Q ss_pred HHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-ce--EEc--CCCCHHHHHHHHHhHc
Q psy11551 230 ERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EE--IEV--PDVEPSAFLTLLKYLY 304 (705)
Q Consensus 230 ~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~--i~l--~~v~~~~f~~lL~yiY 304 (705)
-.+..++.+|.-+||++.+-| ++.+.||.-|. .|+||.+||.|-|+|++ .. ++| +.++..+|..++.-+|
T Consensus 58 yiyq~lf~q~enSDv~l~alg----~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY 132 (488)
T KOG4682|consen 58 YIYQNLFLQGENSDVILEALG----FEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLY 132 (488)
T ss_pred HHHHHHHhcCCCcceehhhcc----ceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhh
Confidence 345678899999999999998 99999999996 69999999999999998 43 334 4689999999999999
Q ss_pred cCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCcccc
Q psy11551 305 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFV 384 (705)
Q Consensus 305 t~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~ 384 (705)
.+++.|..+.+..++++|.+++++.|.+.|.+.+.+.+++.|++..|..+.+|+...+++.|++++..|+-.+....-+.
T Consensus 133 ~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ 212 (488)
T KOG4682|consen 133 RDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLK 212 (488)
T ss_pred hhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred cCCHHHHHhccccCCccc-C-hHHHHHHHHHHHHhh----ccc---cCCCCC----------hhhh-------HHhHhhh
Q psy11551 385 DIDMSTLESVFARETLNC-K-EMHLFEAALNWANAE----CVR---RDLEPT----------AHNK-------RLVLGNA 438 (705)
Q Consensus 385 ~L~~~~l~~ll~~~~l~v-~-E~~vf~av~~W~~~~----~~~---~~~~~~----------~~~r-------~~~~~~l 438 (705)
+++.+.+..++.|++|.+ . |.++|..+..|+--. +.. ..++.+ ++.+ -+-...+
T Consensus 213 ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfLql~pd~~~~lk~~~~ETdvw~tf~~~~~e~~~fl~t~~g~~y~~v 292 (488)
T KOG4682|consen 213 EISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFLQLVPDWNGSLKQLLTETDVWFTFQRKDFEGMAFLETEIGRPYVSV 292 (488)
T ss_pred hcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHhhhcccccchhccCccccceeEEeeecchhhchhhccccCCchHHH
Confidence 999999999999999998 5 999999999998532 100 111111 1101 0224567
Q ss_pred hcccccCCCCH-HHHHHhhhhcCCCCch
Q psy11551 439 LYLVRIPTMSL-GEFANKAAQLGILTLQ 465 (705)
Q Consensus 439 l~~vRf~~m~~-~~l~~~v~~~~~~~~~ 465 (705)
+.+.|+..++. ..=.+.+.++++++.+
T Consensus 293 F~~LRlq~it~~~~dlkii~~dniiP~e 320 (488)
T KOG4682|consen 293 FRHLRLQYITSDLADLKIIEQDNIIPSE 320 (488)
T ss_pred HHHHHHHHHHhccchhhhhhhcCcCcHH
Confidence 77888777766 2334567777777754
No 16
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.75 E-value=4.9e-19 Score=153.84 Aligned_cols=102 Identities=23% Similarity=0.397 Sum_probs=91.8
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHhhCccCccccCHHHHHHHhhcCCcCc-chHHHHHHHHHHHHhhccccCCC
Q psy11551 557 ACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLE 635 (705)
Q Consensus 557 ~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~F~~L~~~~l~~il~~d~L~v-~E~~vf~av~~W~~~~~~~~~~~ 635 (705)
|++++.+|..|+..+|.+.|.+||.+||.+++++++|++||.+.+..||++|+|++ +|.+||+|+.+|++++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~------- 73 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN------- 73 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT-------
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC-------
Confidence 78999999999999999999999999999999999999999999999999999998 9999999999999987
Q ss_pred CchhhHHHHHhhhhhcccCCCCChHHHHHHHh
Q psy11551 636 PTAHNKRLVLGNALYLVRIPTMSLGEFANKAA 667 (705)
Q Consensus 636 ~~~~~~~~~l~~ll~~iRfplm~~~~l~~~v~ 667 (705)
..+|...+..++++||||+|++++|.+.|+
T Consensus 74 --~~~r~~~~~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 --PENREEHLKELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp --HHHHTTTHHHHHCCCHHHCT-HHHHHHCCT
T ss_pred --HHHHHHHHHHHHHhCCcccCCHHHHHHHHC
Confidence 556778899999999999999999988663
No 17
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.73 E-value=1e-17 Score=147.70 Aligned_cols=107 Identities=36% Similarity=0.633 Sum_probs=95.7
Q ss_pred HHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCC-CCCCc-ceEEcCCCCHHHHHHHHHhHccCCcc
Q psy11551 232 NAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGG-LAENK-EEIEVPDVEPSAFLTLLKYLYCDDIQ 309 (705)
Q Consensus 232 l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~-~~e~~-~~i~l~~v~~~~f~~lL~yiYt~~~~ 309 (705)
++++++++.++|++|.+++ +..|+|||.||+++|+||++||.++ +.+.. .++.++++++++|..+++|+|+|++.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d---~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~ 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGD---GKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETT---TEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE
T ss_pred ChHHHcCCCCCCEEEEECC---CEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc
Confidence 4678899999999999994 2999999999999999999999998 56655 67999999999999999999999999
Q ss_pred CC-hhhHHHHHHHHhhcChhHHHHHHHHHHHhc
Q psy11551 310 LE-ADTVLATLYVAKKYIVPHLARACVTYLETS 341 (705)
Q Consensus 310 i~-~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~ 341 (705)
++ .+++.+++.+|++|+++.|++.|.++|.++
T Consensus 78 ~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 98 999999999999999999999999999764
No 18
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.68 E-value=1.5e-16 Score=137.61 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=90.1
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHhhCccCccccCHHHHHHHhhcCCcCc-chHHHHHHHHHHHHhhccccCCC
Q psy11551 557 ACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLE 635 (705)
Q Consensus 557 ~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~F~~L~~~~l~~il~~d~L~v-~E~~vf~av~~W~~~~~~~~~~~ 635 (705)
|+.++.+|..|+...|.+.|.+||.+||..+.++++|++|+.+.+..+|++|+|++ +|.++|+||.+|++++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~------- 73 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD------- 73 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC-------
Confidence 56788999999999999999999999999999999999999999999999999998 9999999999999987
Q ss_pred CchhhHHHHHhhhhhcccCCCCChHHHHH
Q psy11551 636 PTAHNKRLVLGNALYLVRIPTMSLGEFAN 664 (705)
Q Consensus 636 ~~~~~~~~~l~~ll~~iRfplm~~~~l~~ 664 (705)
...+ ..+..++++||||+|++++|.+
T Consensus 74 --~~~~-~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 --PERR-RHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred --HHHH-HHHHHHHHhCCCCCCCHHHHHh
Confidence 2333 4788999999999999998765
No 19
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.65 E-value=1.4e-16 Score=138.38 Aligned_cols=102 Identities=23% Similarity=0.397 Sum_probs=92.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCcccccCCHHHHHhccccCCccc-ChHHHHHHHHHHHHhhccccCCC
Q psy11551 347 ACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLE 425 (705)
Q Consensus 347 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~~l~~ll~~~~l~v-~E~~vf~av~~W~~~~~~~~~~~ 425 (705)
|+.++.+|..|++.+|.+.|.+||..||.++..+++|.+||.+.+..+|+++++++ +|.++|+++++|++++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~------- 73 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN------- 73 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT-------
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC-------
Confidence 78999999999999999999999999999999999999999999999999999998 8999999999999987
Q ss_pred CChhhhHHhHhhhhcccccCCCCHHHHHHhhh
Q psy11551 426 PTAHNKRLVLGNALYLVRIPTMSLGEFANKAA 457 (705)
Q Consensus 426 ~~~~~r~~~~~~ll~~vRf~~m~~~~l~~~v~ 457 (705)
+..|.+++..++++|||++|++++|.+.|+
T Consensus 74 --~~~r~~~~~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 --PENREEHLKELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp --HHHHTTTHHHHHCCCHHHCT-HHHHHHCCT
T ss_pred --HHHHHHHHHHHHHhCCcccCCHHHHHHHHC
Confidence 567999999999999999999999988653
No 20
>KOG0783|consensus
Probab=99.63 E-value=3.2e-16 Score=168.51 Aligned_cols=288 Identities=19% Similarity=0.329 Sum_probs=173.1
Q ss_pred hhhHHHHHHHHHcC----CCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-------------ceEE
Q psy11551 225 KPTVRERNAAMFNN----ELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-------------EEIE 287 (705)
Q Consensus 225 ~~~l~~~l~~l~~~----~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-------------~~i~ 287 (705)
.+.+-..+..|+.. ..+.||+|.||+ ..|+|||.||++||++|+.+|-...+.+. ..|.
T Consensus 538 ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~----~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ 613 (1267)
T KOG0783|consen 538 SSNFEGSFPKLLSEENYKDSFHDVTFYVGT----SMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIR 613 (1267)
T ss_pred cccchhhhHHHhhccccccccceEEEEecC----eecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceee
Confidence 34445555555543 367799999999 99999999999999999999965432211 3456
Q ss_pred cCCCCHHHHHHHHHhHccCCcc--CChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHH
Q psy11551 288 VPDVEPSAFLTLLKYLYCDDIQ--LEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQR 365 (705)
Q Consensus 288 l~~v~~~~f~~lL~yiYt~~~~--i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~ 365 (705)
+.+++|.+|+.+|+||||+..- ...+.+..+ +--..=..+.+ .+..|-.+...+++++..+|...
T Consensus 614 ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci---~fs~~k~N~~q----------rtrtCeMl~~~lekf~l~el~~~ 680 (1267)
T KOG0783|consen 614 VEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCI---RFSPLKENLSQ----------RTRTCEMLANLLEKFHLAELLPF 680 (1267)
T ss_pred eccCCHHHHHHHHHHHhcccccCCccccchhhh---hccccccChhh----------cccHHHHHHHHHhhhhHHhhhhh
Confidence 7899999999999999999642 222222110 00000000000 23445555566666666666555
Q ss_pred HHHHHHHHHH--HHhC-CcccccCC--HHHHHhcc--ccCC-cc-----c-ChHHHHHHHHH--HHHhhccccCCCCChh
Q psy11551 366 CWEVIDAQAE--MALK-SEGFVDID--MSTLESVF--ARET-LN-----C-KEMHLFEAALN--WANAECVRRDLEPTAH 429 (705)
Q Consensus 366 ~~~~i~~~~~--~v~~-~~~f~~L~--~~~l~~ll--~~~~-l~-----v-~E~~vf~av~~--W~~~~~~~~~~~~~~~ 429 (705)
...+...+-. .+.+ ...|..|+ ++.+...+ ++.. |. . --.+.|..... |++..
T Consensus 681 ~~s~~~~~~~~n~ia~~~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~s----------- 749 (1267)
T KOG0783|consen 681 SVSRQPLLSLTNDIAQLYNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESS----------- 749 (1267)
T ss_pred hhhccchhhcccHHHHHhcCeeEecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhc-----------
Confidence 4443222110 1111 22333333 22221111 1111 10 0 12233333222 33321
Q ss_pred hhHHhHhhhhcccccCCCC--HHHHHHhhhhcCCCCchHHHHHHHhhccCCCCCCCCCCCCCCCCCCcccccccccccCC
Q psy11551 430 NKRLVLGNALYLVRIPTMS--LGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLF 507 (705)
Q Consensus 430 ~r~~~~~~ll~~vRf~~m~--~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~~~~~~~~~~~~~~~~~~ 507 (705)
.|-...|+ .+.+ +
T Consensus 750 -----------S~t~~~~p~~~e~m------------------------------------------------------~ 764 (1267)
T KOG0783|consen 750 -----------SITVNLSPLTVEHM------------------------------------------------------S 764 (1267)
T ss_pred -----------cceeecCcchHHHH------------------------------------------------------H
Confidence 01111111 1111 0
Q ss_pred CCCCCcc-ccceee-----ccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHhhhcCCCchHHHHHHHHHH
Q psy11551 508 PFPRYLY-CDDIQL-----EADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVID 581 (705)
Q Consensus 508 ~~~~y~y-~~~~~~-----~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~A~~~~~~~L~~~c~~~i~ 581 (705)
-+|+|+| ++++.+ ..+-..+++.+|+.|.+..|+..|..-|.+-|+..|+-.++++|.+|+...|...|++||+
T Consensus 765 ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic 844 (1267)
T KOG0783|consen 765 IVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFIC 844 (1267)
T ss_pred HHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1244555 233322 2344678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccCccccCHHHHHHHh
Q psy11551 582 AQAEMALKSEGFVDIDMSTLESVF 605 (705)
Q Consensus 582 ~n~~~v~~~~~F~~L~~~~l~~il 605 (705)
.|.+.++.-....+++-..|..+-
T Consensus 845 ~N~~~~Learsi~~~dg~~LK~l~ 868 (1267)
T KOG0783|consen 845 HNIEFFLEARSISEWDGFHLKKLA 868 (1267)
T ss_pred HhHHHHHHhccHhhhcchHHHHHH
Confidence 999999987777777766665543
No 21
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.57 E-value=8.4e-15 Score=123.20 Aligned_cols=89 Identities=39% Similarity=0.615 Sum_probs=84.2
Q ss_pred cEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHHHHHHHhHccCCccCChhhHHHHHHH
Q psy11551 243 DVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYV 321 (705)
Q Consensus 243 Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~v~~ll~~ 321 (705)
|+++.+++ +.|++||.+|+++|+||++||.+++.++. ..+.++++++.+|+.+++|+|++++.++..++..++.+
T Consensus 1 dv~i~v~~----~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVVGG----KKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLEL 76 (90)
T ss_pred CeEEEECC----EEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHH
Confidence 78899998 99999999999999999999999887765 88999999999999999999999999999999999999
Q ss_pred HhhcChhHHHHHHH
Q psy11551 322 AKKYIVPHLARACV 335 (705)
Q Consensus 322 A~~~~l~~L~~~c~ 335 (705)
|++|+++.|+..|+
T Consensus 77 a~~~~~~~l~~~c~ 90 (90)
T smart00225 77 ADYLQIPGLVELCE 90 (90)
T ss_pred HHHHCcHHHHhhhC
Confidence 99999999999884
No 22
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.52 E-value=5e-14 Score=121.70 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCcccccCCHHHHHhccccCCccc-ChHHHHHHHHHHHHhhccccCCC
Q psy11551 347 ACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLE 425 (705)
Q Consensus 347 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~~l~~ll~~~~l~v-~E~~vf~av~~W~~~~~~~~~~~ 425 (705)
|+.++.+|..|++..|.+.|.+||.+||..+.++++|..||.+.+..+|++|++++ +|.++|+++++|++++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~------- 73 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD------- 73 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC-------
Confidence 56788899999999999999999999999999999999999999999999999997 8999999999999986
Q ss_pred CChhhhHHhHhhhhcccccCCCCHHHHHH
Q psy11551 426 PTAHNKRLVLGNALYLVRIPTMSLGEFAN 454 (705)
Q Consensus 426 ~~~~~r~~~~~~ll~~vRf~~m~~~~l~~ 454 (705)
...| +.+..++++|||++|++++|.+
T Consensus 74 --~~~~-~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 --PERR-RHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred --HHHH-HHHHHHHHhCCCCCCCHHHHHh
Confidence 3344 4889999999999999998765
No 23
>KOG0511|consensus
Probab=99.52 E-value=8.4e-14 Score=138.18 Aligned_cols=276 Identities=18% Similarity=0.130 Sum_probs=184.3
Q ss_pred cCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCChhhHHHHHHHHh
Q psy11551 4 HTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAK 83 (705)
Q Consensus 4 ~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~~~~~~ll~~A~ 83 (705)
.|+.|-|||+.|++||.+|...+.. .+..+.+|+-..+-+.+|..|++|+|-+.-.+..+.-.+++.+..
T Consensus 158 ~g~~f~ahkfll~arSs~~~~k~v~----------~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~ 227 (516)
T KOG0511|consen 158 EGANFDAHKFLLEARSSNYFPKDVM----------FYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEV 227 (516)
T ss_pred ccccccHHHHHHHhhhcccCchhhh----------hccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhh
Confidence 5788999999999999998766654 344556666567889999999999998755555566688999999
Q ss_pred hcCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhcCCCCCccccccccccchhhhhhhhCCCCCC
Q psy11551 84 KYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPL 163 (705)
Q Consensus 84 ~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (705)
+|+.+.+...... +.-...-+....+.+....+....++....
T Consensus 228 kF~~e~l~~~~~k--------dr~~~~sR~~k~~q~~~tq~~~~~~Li~~~----------------------------- 270 (516)
T KOG0511|consen 228 KFSKEKLSLEISK--------DRMEDLSRICKVCQCESTQKIIEKELIHQR----------------------------- 270 (516)
T ss_pred hccHHHhHHHHhh--------hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------------
Confidence 9998887533211 110011111122222222222111111000
Q ss_pred CCCCCCCccchhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHcCCCCcc
Q psy11551 164 VPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMAD 243 (705)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~D 243 (705)
...+....+.. +.+ +..+--.+.+
T Consensus 271 --------------~~~ykt~~dl~-------------------------------Ns~---------~~~fsl~~ay-- 294 (516)
T KOG0511|consen 271 --------------YAEYKTHRDLD-------------------------------NSP---------MKRFSLQGAY-- 294 (516)
T ss_pred --------------hhhhccchhhc-------------------------------cCh---------hheeeecccc--
Confidence 00000000000 000 0000001111
Q ss_pred EEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-----ceEEcCCCCHHHHHHHHHhHccCCccCChhhHHHH
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-----EEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLAT 318 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-----~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~v~~l 318 (705)
+.+-++ .++|||++++. |++||+.||.|++.|+. ....++.....+.+.+++|+|+++.++.++-+.++
T Consensus 295 iql~~~-----~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dv 368 (516)
T KOG0511|consen 295 IQLPEE-----DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDV 368 (516)
T ss_pred cccccc-----ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhH
Confidence 333333 45999999996 78999999999999854 44666778889999999999999999999999999
Q ss_pred HHHHhhcChh--H-HHHHHHHHHHhc---CChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCcccccCCH
Q psy11551 319 LYVAKKYIVP--H-LARACVTYLETS---LTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDM 388 (705)
Q Consensus 319 l~~A~~~~l~--~-L~~~c~~~l~~~---l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~ 388 (705)
+-.|+++.+. . |+.++...|.++ ++.-|+..++..++..+...|...+..|+..|...+...|++...-.
T Consensus 369 ll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 369 LLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred HHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 9999999765 2 555555555554 45557899999999999999999999999999999999988865443
No 24
>KOG4591|consensus
Probab=99.51 E-value=2.7e-14 Score=129.61 Aligned_cols=118 Identities=28% Similarity=0.457 Sum_probs=105.0
Q ss_pred CeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCChh--hHHHHHHHH
Q psy11551 5 TQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEAD--TVLATLYVA 82 (705)
Q Consensus 5 g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~~--~~~~ll~~A 82 (705)
++.++|||+|||+||++.+ |.. +-.+...+..+.|+++++|...+++|||+++++..+ .+.++.++|
T Consensus 78 ~k~i~AHKfVLAARsD~Wk--faN---------~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~A 146 (280)
T KOG4591|consen 78 DKHIPAHKFVLAARSDFWK--FAN---------GGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELA 146 (280)
T ss_pred cccCchhhhhhhhhcchhh--hcc---------CCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHH
Confidence 6789999999999999986 443 234556777888999999999999999999987655 467899999
Q ss_pred hhcCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhc
Q psy11551 83 KKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQ 133 (705)
Q Consensus 83 ~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~ 133 (705)
.+|+++.++..|++-+...++++||+.+|.+|+..+...|+..|.+.|..+
T Consensus 147 n~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~ 197 (280)
T KOG4591|consen 147 NRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGA 197 (280)
T ss_pred HHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999743
No 25
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.51 E-value=3.5e-14 Score=125.02 Aligned_cols=93 Identities=34% Similarity=0.601 Sum_probs=82.3
Q ss_pred Ceec-CeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCc-cCeEEcCCCCHHHHHHHHHhHhCCcccCC-hhhHHH
Q psy11551 1 MIRH-TQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAEN-KEEIEVPDVEPSAFLTLLKYLYCDDIQLE-ADTVLA 77 (705)
Q Consensus 1 l~v~-g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~-~~~i~l~~v~~~~f~~lL~yiYt~~~~~~-~~~~~~ 77 (705)
|.|+ |++|+|||.||+++|+||++||.++ +..+. ..+|.++++++++|..+++|+|+|++.++ .+++.+
T Consensus 15 i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ 86 (111)
T PF00651_consen 15 IRVGDGKTFYVHKNILAARSPYFRNLFEGS--------KFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEE 86 (111)
T ss_dssp EEETTTEEEEE-HHHHHHHBHHHHHHHTTT--------TSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHH
T ss_pred EEECCCEEEeechhhhhccchhhhhccccc--------ccccccccccccccccccccccccccccCCcccCCHHHHHHH
Confidence 4688 8999999999999999999999994 12333 35789999999999999999999999998 999999
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhc
Q psy11551 78 TLYVAKKYIVPHLARACVTYLETS 101 (705)
Q Consensus 78 ll~~A~~~~~~~l~~~c~~~l~~~ 101 (705)
++.+|++|+++.|+..|+.+|.++
T Consensus 87 ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 87 LLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999764
No 26
>KOG2838|consensus
Probab=99.49 E-value=9.5e-14 Score=131.98 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=48.8
Q ss_pred CeecCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccC
Q psy11551 1 MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQL 70 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~ 70 (705)
|+.....|+|||++|++|||+|+.+.+.+. +.-.+.--.|...+++.++|+.+|+|+|||+..+
T Consensus 135 iiFkeTcfpahRA~laaRCpffK~l~nsd~------e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgm 198 (401)
T KOG2838|consen 135 IIFKETCFPAHRAFLAARCPFFKILANSDE------EPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGM 198 (401)
T ss_pred eeeeeccchHHHHHHHhhCcchhhhccCCC------CcchhhhhhhhhhccChHHHHHHHHHHHhcccch
Confidence 345677899999999999999999888741 0111122346666899999999999999998643
No 27
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.45 E-value=1.9e-13 Score=114.81 Aligned_cols=87 Identities=33% Similarity=0.507 Sum_probs=78.7
Q ss_pred CeecCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCChhhHHHHHH
Q psy11551 1 MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLY 80 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~~~~~~ll~ 80 (705)
|.|+|+.|++||.+|+++|+||++||.++. .......+.++++++++|+.+++|+|++++.++..++..++.
T Consensus 4 i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~--------~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~ 75 (90)
T smart00225 4 LVVGGKKFKAHKAVLAACSPYFKALFSGDF--------KESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLE 75 (90)
T ss_pred EEECCEEEehHHHHHhhcCHHHHHHHcCCC--------ccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHH
Confidence 468999999999999999999999999852 122468899999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHH
Q psy11551 81 VAKKYIVPHLARACV 95 (705)
Q Consensus 81 ~A~~~~~~~l~~~c~ 95 (705)
+|++|+++.++..|+
T Consensus 76 ~a~~~~~~~l~~~c~ 90 (90)
T smart00225 76 LADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHCcHHHHhhhC
Confidence 999999999998884
No 28
>KOG4682|consensus
Probab=99.02 E-value=4.3e-10 Score=113.39 Aligned_cols=166 Identities=14% Similarity=0.208 Sum_probs=136.3
Q ss_pred CCCccccceeeccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhHHHHHHhhhcCCCchHHHHHHHHHHHHHHHhhC
Q psy11551 510 PRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALK 589 (705)
Q Consensus 510 ~~y~y~~~~~~~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v~~ 589 (705)
+.-+|.+++.+..+.+..+|.+|.+++++.|.+.|++.+.+.|+++|+|.-|++|..|+++.+.+.|++++..|+-.+..
T Consensus 128 ~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~ 207 (488)
T KOG4682|consen 128 FGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQN 207 (488)
T ss_pred HhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhh
Confidence 33489999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCccccCHHHHHHHhhcCCcCc-c-hHHHHHHHHHHHH----hhccc--cCCCC-c----------hhhHHH-------
Q psy11551 590 SEGFVDIDMSTLESVFARETLNC-K-EMHLFEAALNWAN----AECVR--RDLEP-T----------AHNKRL------- 643 (705)
Q Consensus 590 ~~~F~~L~~~~l~~il~~d~L~v-~-E~~vf~av~~W~~----~~~~~--~~~~~-~----------~~~~~~------- 643 (705)
...+.+++.+.+..+|.+..|-| + |.++|..+..|+- .+|.. +...+ + .+++..
T Consensus 208 ~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfLql~pd~~~~lk~~~~ETdvw~tf~~~~~e~~~fl~t~~g~ 287 (488)
T KOG4682|consen 208 VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFLQLVPDWNGSLKQLLTETDVWFTFQRKDFEGMAFLETEIGR 287 (488)
T ss_pred HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHhhhcccccchhccCccccceeEEeeecchhhchhhccccCC
Confidence 88999999999999999999998 5 9999999999973 12211 01000 1 011110
Q ss_pred HHhhhhhcccCCCCCh-HHHHHHHhHhCCCChH
Q psy11551 644 VLGNALYLVRIPTMSL-GEFANKAAQLGILTLQ 675 (705)
Q Consensus 644 ~l~~ll~~iRfplm~~-~~l~~~v~~~~l~~~~ 675 (705)
-+..++.+.|+-.++. -.=++.++..++++.+
T Consensus 288 ~y~~vF~~LRlq~it~~~~dlkii~~dniiP~e 320 (488)
T KOG4682|consen 288 PYVSVFRHLRLQYITSDLADLKIIEQDNIIPSE 320 (488)
T ss_pred chHHHHHHHHHHHHHhccchhhhhhhcCcCcHH
Confidence 1335888999876654 3345678888888875
No 29
>KOG0511|consensus
Probab=98.99 E-value=4.5e-10 Score=112.04 Aligned_cols=315 Identities=16% Similarity=0.068 Sum_probs=186.6
Q ss_pred CccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCcceEEcCCCCHHHHHHHHHhHccCCccCChhhHHHHHH
Q psy11551 241 MADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLY 320 (705)
Q Consensus 241 ~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~v~~ll~ 320 (705)
..|+++.... |+.|.|||..|++||.+|...+..-+. ++.+|+-..+-+.+|..+++|+|-+.-.+-++.-..++.
T Consensus 149 ~~di~f~~q~---g~~f~ahkfll~arSs~~~~k~v~~~~-~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynalls 224 (516)
T KOG0511|consen 149 CHDIDFLQQE---GANFDAHKFLLEARSSNYFPKDVMFYV-QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLS 224 (516)
T ss_pred ccchHHHhhc---cccccHHHHHHHhhhcccCchhhhhcc-ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHh
Confidence 3588888766 488999999999999999765543332 224565566788999999999999866666666688999
Q ss_pred HHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHH-HHhCCcccccCCHHHHHhccccCC
Q psy11551 321 VAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAE-MALKSEGFVDIDMSTLESVFARET 399 (705)
Q Consensus 321 ~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~-~v~~~~~f~~L~~~~l~~ll~~~~ 399 (705)
+..+|+.+.+......- .--..-+....+.+.......-+++...-. +.-..-+..+
T Consensus 225 i~~kF~~e~l~~~~~kd--------r~~~~sR~~k~~q~~~tq~~~~~~Li~~~~~~ykt~~dl~N-------------- 282 (516)
T KOG0511|consen 225 IEVKFSKEKLSLEISKD--------RMEDLSRICKVCQCESTQKIIEKELIHQRYAEYKTHRDLDN-------------- 282 (516)
T ss_pred hhhhccHHHhHHHHhhh--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccchhhcc--------------
Confidence 99999998766443221 101111222223333322222222211111 1111111111
Q ss_pred cccChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHHHHHHhhhhcCCCCchHHHHHHHhhccCCC
Q psy11551 400 LNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNK 479 (705)
Q Consensus 400 l~v~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 479 (705)
++..+|..--.+++-. .+.|. .+++.-|..-+++..+...+++.++ . .
T Consensus 283 ---s~~~~fsl~~ayiql~---------~~~Ry--------P~hla~i~R~eyfk~mf~g~f~e~s-----------~-n 330 (516)
T KOG0511|consen 283 ---SPMKRFSLQGAYIQLP---------EEDRY--------PAHLARILRVEYFKSMFVGDFIESS-----------V-N 330 (516)
T ss_pred ---Chhheeeecccccccc---------ccccc--------cHHHHHHHHHHHHHHHhccchhhhc-----------C-C
Confidence 1222222111222210 01110 0011112233333333322222210 0 0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccCCCCCCCccccceeeccchhhhHHHhhccCCchh---HHHHHHHHHHHhcChh-
Q psy11551 480 PHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPH---LARACVTYLETSLTAK- 555 (705)
Q Consensus 480 ~~~~~~~~pr~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~l~~A~~~~l~~---L~~~c~~~l~~~l~~~- 555 (705)
..++.-+-|..... +.. =.+||+|++..++..+-|.+++.+|+++.+.. |+.+....+.+++.+-
T Consensus 331 ~~~p~lslp~~~~~--------vve---I~lr~lY~d~tdi~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id 399 (516)
T KOG0511|consen 331 DTRPGLSLPSLADV--------VVE---IDLRNLYCDQTDIIFDVASDVLLFADKLALADDRLLKTAASAEITQWLELID 399 (516)
T ss_pred ccccccccchHHHH--------HHH---HHHHHhhcccccchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 00100111111100 001 14789999999999999999999999998762 6777777887776553
Q ss_pred --hHHHHHHhhhcCCCchHHHHHHHHHHHHHHHhhCccCccccCHHHHHHHhhcCCcCcchHHHHHHHHHHHHh
Q psy11551 556 --NACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANA 627 (705)
Q Consensus 556 --n~~~i~~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~F~~L~~~~l~~il~~d~L~v~E~~vf~av~~W~~~ 627 (705)
|++.|++.++..+.++|+..+-.|++.|...++..|+|.++-..+...|..|.+ .+-.++.+-+. |...
T Consensus 400 ~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~ri~~rqe--TDtieLlDDiR-y~l~ 470 (516)
T KOG0511|consen 400 MYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPRIPARQE--TDTIELLDDIR-YLLA 470 (516)
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccchhhhhcc--cchhHHHHHHH-HHHH
Confidence 799999999999999999999999999999999999999988888888877654 24455555544 7654
No 30
>KOG2838|consensus
Probab=98.83 E-value=2.6e-08 Score=95.34 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc---ceEEcCCCCHHHHHHHH
Q psy11551 224 SKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK---EEIEVPDVEPSAFLTLL 300 (705)
Q Consensus 224 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~---~~i~l~~v~~~~f~~lL 300 (705)
...++++++...++.....|+.++... ..|+|||++|++|||+|+.+..++-.... -.+..-+++-++|+.+|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFke----TcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafL 188 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKE----TCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFL 188 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeee----ccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHH
Confidence 467889999999998899999999988 88999999999999999998876533222 45666789999999999
Q ss_pred HhHccCCccC
Q psy11551 301 KYLYCDDIQL 310 (705)
Q Consensus 301 ~yiYt~~~~i 310 (705)
.|+|||+.-.
T Consensus 189 h~l~tgEfgm 198 (401)
T KOG2838|consen 189 HSLITGEFGM 198 (401)
T ss_pred HHHHhcccch
Confidence 9999998643
No 31
>KOG2716|consensus
Probab=97.62 E-value=0.00031 Score=68.18 Aligned_cols=93 Identities=23% Similarity=0.326 Sum_probs=79.0
Q ss_pred EEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCC-c--ceEEcCCCCHHHHHHHHHhHccCCccC--ChhhHHHH
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAEN-K--EEIEVPDVEPSAFLTLLKYLYCDDIQL--EADTVLAT 318 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~-~--~~i~l~~v~~~~f~~lL~yiYt~~~~i--~~~~v~~l 318 (705)
|.+.||| ..|...+.-|.....||++|+.+++.-. + +.|-| |=+|.-|..+|+||-.|.+.+ +...+.+|
T Consensus 7 vkLnvGG----~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 7 VKLNVGG----TIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred EEEecCC----eEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 4577888 9999999999999999999999987422 2 44555 678999999999999888776 45678899
Q ss_pred HHHHhhcChhHHHHHHHHHHHhc
Q psy11551 319 LYVAKKYIVPHLARACVTYLETS 341 (705)
Q Consensus 319 l~~A~~~~l~~L~~~c~~~l~~~ 341 (705)
+.-|.+|.++.|.+.|...+...
T Consensus 82 ~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 82 LREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhc
Confidence 99999999999999999987654
No 32
>KOG2716|consensus
Probab=97.52 E-value=0.00029 Score=68.42 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=76.5
Q ss_pred CeecCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCCh--hhHHHH
Q psy11551 1 MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEA--DTVLAT 78 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~--~~~~~l 78 (705)
|.|||+.|..+|.-|.....+|++|+.+++.. ..+..+.|.| |=+|.-|..+|+|+-.|.++++. ..+.++
T Consensus 9 LnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~------~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 9 LNVGGTIFKTSKSTLTKFDGFFKTMLETDIPV------EKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred EecCCeEEEeehhhhhhhhhHHHHHhhcCCcc------ccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 46999999999999999999999999996310 1112244554 57899999999999988877654 567899
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhc
Q psy11551 79 LYVAKKYIVPHLARACVTYLETS 101 (705)
Q Consensus 79 l~~A~~~~~~~l~~~c~~~l~~~ 101 (705)
++-|.+|.++.|++.|...+...
T Consensus 82 ~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 82 LREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhc
Confidence 99999999999999999887664
No 33
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.24 E-value=0.00024 Score=71.90 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=76.5
Q ss_pred EEEEeCCCC--CceeEeeehhhhhccCHHHHHhhcCCCCCCc--ceEEcC-CCCHHHHHHHHHhHccCCccCChhhHHHH
Q psy11551 244 VKFVVGSSG--HTQTIPAHKYVLATGSSVFYAMFYGGLAENK--EEIEVP-DVEPSAFLTLLKYLYCDDIQLEADTVLAT 318 (705)
Q Consensus 244 v~l~v~~~~--~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~--~~i~l~-~v~~~~f~~lL~yiYt~~~~i~~~~v~~l 318 (705)
|+|.|-|+. ..+.|.|.+.+|...=.||+..+.....+++ .+|.|. ..+-.+|+-+++|+....-.++++||..+
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsI 80 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSI 80 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEe
Confidence 345554322 3478999999999999999999975333333 455554 57788999999999998888999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHhc
Q psy11551 319 LYVAKKYIVPHLARACVTYLETS 341 (705)
Q Consensus 319 l~~A~~~~l~~L~~~c~~~l~~~ 341 (705)
+.-|++++|+.|.+.|..|+.++
T Consensus 81 liSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 81 LISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred EehhhhhccHHHHHHHHHHHHHh
Confidence 99999999988887777776543
No 34
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.06 E-value=0.00056 Score=57.80 Aligned_cols=86 Identities=22% Similarity=0.335 Sum_probs=64.5
Q ss_pred EEEEeCCCCCceeEeeehhhhh-ccCHHHHHhhcCC---CCCCc-ceEEcCCCCHHHHHHHHHhHcc-CCccCC-hhhHH
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLA-TGSSVFYAMFYGG---LAENK-EEIEVPDVEPSAFLTLLKYLYC-DDIQLE-ADTVL 316 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLa-a~S~yF~~mf~~~---~~e~~-~~i~l~~v~~~~f~~lL~yiYt-~~~~i~-~~~v~ 316 (705)
|.|.||| +.|.+-+..|. ....+|..|+.++ ..... ..+-+ |=+|..|+.||+|+.+ +.+..+ ...+.
T Consensus 1 V~lNVGG----~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~ 75 (94)
T PF02214_consen 1 VRLNVGG----TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLE 75 (94)
T ss_dssp EEEEETT----EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HH
T ss_pred CEEEECC----EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHH
Confidence 6789999 99999999998 5567999999864 11222 56655 6799999999999999 666654 55678
Q ss_pred HHHHHHhhcChhHH-HHHH
Q psy11551 317 ATLYVAKKYIVPHL-ARAC 334 (705)
Q Consensus 317 ~ll~~A~~~~l~~L-~~~c 334 (705)
.++.-|++|+++.+ ++.|
T Consensus 76 ~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 76 ELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHT-HHHHBHHC
T ss_pred HHHHHHHHcCCCccccCCC
Confidence 89999999999988 6655
No 35
>KOG3473|consensus
Probab=97.06 E-value=0.0032 Score=51.05 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=63.4
Q ss_pred EEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc---ceEEcCCCCHHHHHHHHHhH-----ccCC------cc
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK---EEIEVPDVEPSAFLTLLKYL-----YCDD------IQ 309 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~---~~i~l~~v~~~~f~~lL~yi-----Yt~~------~~ 309 (705)
|+++.+| +.+|-.-|-+ |.-|+-.|+||++....+. +++.+++++..+++.+.+|+ |++. .+
T Consensus 19 VkLvS~D---dhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~ 94 (112)
T KOG3473|consen 19 VKLVSSD---DHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFD 94 (112)
T ss_pred eEeecCC---CcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCC
Confidence 5666655 2777776664 5569999999998765544 88999999999999999998 4544 45
Q ss_pred CChhhHHHHHHHHhhcCh
Q psy11551 310 LEADTVLATLYVAKKYIV 327 (705)
Q Consensus 310 i~~~~v~~ll~~A~~~~l 327 (705)
|.++.++++|.+|+++.+
T Consensus 95 IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLEC 112 (112)
T ss_pred CCHHHHHHHHHHhhhhcC
Confidence 889999999999998753
No 36
>KOG1987|consensus
Probab=97.03 E-value=0.00036 Score=72.85 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=106.8
Q ss_pred eeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHHHHHHHhHccCCccCChhhHH---HHHHHHhhcChhHH
Q psy11551 255 QTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVL---ATLYVAKKYIVPHL 330 (705)
Q Consensus 255 ~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~v~---~ll~~A~~~~l~~L 330 (705)
..+.+|+.+++++|+.|+.|+..+..+.. ..+.+.+.++..++.+..|.|+..-....+.+. .++.+|..++...+
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~l 189 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHL 189 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHH
Confidence 55999999999999999999988765554 666888999999999999999987665556554 78889999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHH--HHHHHhC
Q psy11551 331 ARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDA--QAEMALK 379 (705)
Q Consensus 331 ~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~--~~~~v~~ 379 (705)
+..|...+...++..+++..+..+..++...+...+..++.. ++..+..
T Consensus 190 k~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 190 KLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEK 240 (297)
T ss_pred HHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHH
Confidence 999999999999999988889999999988888888888887 5555543
No 37
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.86 E-value=0.00072 Score=57.11 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=63.0
Q ss_pred CeecCeeeehhHHHHh-cCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhC-CcccCC-hhhHHH
Q psy11551 1 MIRHTQTIPAHKYVLA-TGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC-DDIQLE-ADTVLA 77 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLa-arS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt-~~~~~~-~~~~~~ 77 (705)
|.|||+.|.+-+..|. ....+|.+|+.++. .......+.++.+ |-+|..|+.+|+|+-+ +.+..+ ......
T Consensus 3 lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~-----~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~ 76 (94)
T PF02214_consen 3 LNVGGTIFETSRSTLTRYPDSLLARLFSGER-----SDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEE 76 (94)
T ss_dssp EEETTEEEEEEHHHHHTSTTSTTTSHHHTGH-----GGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHH
T ss_pred EEECCEEEEEcHHHHhhCCCChhhhHHhhcc-----ccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHH
Confidence 5799999999999998 44568999998720 0012234466666 5799999999999999 676654 456778
Q ss_pred HHHHHhhcCcHHH-HHHH
Q psy11551 78 TLYVAKKYIVPHL-ARAC 94 (705)
Q Consensus 78 ll~~A~~~~~~~l-~~~c 94 (705)
+++-|.+|+++.+ ++.|
T Consensus 77 l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 77 LLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHT-HHHHBHHC
T ss_pred HHHHHHHcCCCccccCCC
Confidence 9999999999988 6655
No 38
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.76 E-value=0.0062 Score=52.45 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=58.0
Q ss_pred EEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc--ceEEcCCCCHHHHHHHHHhHccCCcc------------
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK--EEIEVPDVEPSAFLTLLKYLYCDDIQ------------ 309 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~--~~i~l~~v~~~~f~~lL~yiYt~~~~------------ 309 (705)
++++..+ |..|.+.+.+. ..|..++.|+.+.-.+.. ..|.+++++..+++.+++|++...-.
T Consensus 4 v~L~S~D---g~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 4 IKLISSD---GEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred EEEEeCC---CCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 5666665 48999999977 479999999976432222 58999999999999999999754211
Q ss_pred -------CChhhHHHHHHHHhhcCh
Q psy11551 310 -------LEADTVLATLYVAKKYIV 327 (705)
Q Consensus 310 -------i~~~~v~~ll~~A~~~~l 327 (705)
++.+.+.+|+.||+++++
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344456666666666653
No 39
>KOG1987|consensus
Probab=96.57 E-value=0.0011 Score=69.18 Aligned_cols=120 Identities=23% Similarity=0.247 Sum_probs=101.0
Q ss_pred CeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCChhhHH---HHHHH
Q psy11551 5 TQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVL---ATLYV 81 (705)
Q Consensus 5 g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~~~~~---~ll~~ 81 (705)
|..+.+|+.+++++|++|+.|+..+. ..+....+.+.+.++..++.+..|.|+..-....+.+. .++..
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~--------~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~ 180 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDV--------FKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAA 180 (297)
T ss_pred CcEEEcCceEEEeeecceeeeccccc--------chhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhh
Confidence 45699999999999999999999862 44455666888999999999999999976554444444 78889
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCChhHHHHHHHHHHh
Q psy11551 82 AKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDA 132 (705)
Q Consensus 82 A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~ 132 (705)
|.+++...++..|...+...++..++...+..+..+++..+...+..++..
T Consensus 181 ~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 181 AFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 999999999999999999999988888888899988888888888777763
No 40
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.46 E-value=0.043 Score=47.19 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=45.0
Q ss_pred ecCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCC
Q psy11551 3 RHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCD 66 (705)
Q Consensus 3 v~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~ 66 (705)
-+|..|.+.+.+. ..|..++.|+.+.. ...++...|++++++..+++.+++|++-.
T Consensus 9 ~Dg~~f~v~~~~a-~~S~~i~~~l~~~~-------~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 9 SDGEVFEVEREVA-RQSKTIKAMIEDLG-------VDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred CCCCEEEecHHHH-HHHHHHHHHHHccC-------cccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 4799999999988 57999999998631 11222368999999999999999999854
No 41
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.41 E-value=0.085 Score=40.50 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=45.3
Q ss_pred EEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCcceEEcCCCCHHHHHHHHHhHcc
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 305 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt 305 (705)
|+++..| |+.|.+.+.+.. .|..++.|+.+...+. ..|.+++++..+++.+++|++.
T Consensus 3 v~L~SsD---g~~f~V~~~~a~-~S~~i~~ml~~~~~~~-~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSD---GQEFEVSREAAK-QSKTIKNMLEDLGDED-EPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETT---SEEEEEEHHHHT-TSHHHHHHHHCTCCCG-TEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCC---CCEEEeeHHHHH-HhHHHHHHHhhhcccc-cccccCccCHHHHHHHHHHHHh
Confidence 5677766 599999999875 7999999998632222 3799999999999999999964
No 42
>KOG1724|consensus
Probab=95.15 E-value=0.15 Score=47.19 Aligned_cols=88 Identities=10% Similarity=0.143 Sum_probs=68.1
Q ss_pred ceeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHHHHHHHhHccCCcc-----------------------
Q psy11551 254 TQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAFLTLLKYLYCDDIQ----------------------- 309 (705)
Q Consensus 254 ~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f~~lL~yiYt~~~~----------------------- 309 (705)
|+.|.+-..+.. .|....+++...-.... ..|.|+.|+..+|..+|.|++...-+
T Consensus 14 G~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~F 92 (162)
T KOG1724|consen 14 GEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEF 92 (162)
T ss_pred CceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHH
Confidence 488888888764 68888888764311111 47999999999999999999884321
Q ss_pred --CChhhHHHHHHHHhhcChhHHHHHHHHHHHhcC
Q psy11551 310 --LEADTVLATLYVAKKYIVPHLARACVTYLETSL 342 (705)
Q Consensus 310 --i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l 342 (705)
++..++.+++.||+++.++.|.+.|++.+...+
T Consensus 93 lk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 93 LKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 234578899999999999999999999877655
No 43
>KOG2714|consensus
Probab=94.77 E-value=0.093 Score=54.92 Aligned_cols=84 Identities=26% Similarity=0.280 Sum_probs=68.0
Q ss_pred EEEEeCCCCCceeEeeehhhhhccC--HHHHHhhcCCCCCCc---ceEEcCCCCHHHHHHHHHhHccCCccCChhhHHHH
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLATGS--SVFYAMFYGGLAENK---EEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLAT 318 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLaa~S--~yF~~mf~~~~~e~~---~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~v~~l 318 (705)
|.|.||| +.|...+.-|+-.. .+|.+++++.|.-.+ ..|-| |=+|+.|..+|+|+-||+++++.-....+
T Consensus 13 V~lNVGG----riF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~l 87 (465)
T KOG2714|consen 13 VKLNVGG----RIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERL 87 (465)
T ss_pred EEEecCc----eEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhh
Confidence 6888998 99999999886644 799999998876554 22433 67899999999999999999966655555
Q ss_pred HH-HHhhcChhHHHH
Q psy11551 319 LY-VAKKYIVPHLAR 332 (705)
Q Consensus 319 l~-~A~~~~l~~L~~ 332 (705)
+. -|.+|++..+.+
T Consensus 88 lhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 88 LHDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhhcCcHHHHH
Confidence 55 999999998876
No 44
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.58 E-value=0.099 Score=40.12 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=42.4
Q ss_pred ecCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhC
Q psy11551 3 RHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65 (705)
Q Consensus 3 v~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt 65 (705)
-||+.|.+.+.+. ..|..+++|+.+. ......|++++++..+++.+++|++-
T Consensus 8 sDg~~f~V~~~~a-~~S~~i~~ml~~~----------~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 8 SDGQEFEVSREAA-KQSKTIKNMLEDL----------GDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp TTSEEEEEEHHHH-TTSHHHHHHHHCT----------CCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred CCCCEEEeeHHHH-HHhHHHHHHHhhh----------cccccccccCccCHHHHHHHHHHHHh
Confidence 4799999999998 4799999999873 22222899999999999999999973
No 45
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=94.28 E-value=0.029 Score=57.06 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=86.6
Q ss_pred eeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcC-CCCHHHHHHHHHhHhCCcccCChhhHHHHHHHHhh
Q psy11551 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVP-DVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKK 84 (705)
Q Consensus 6 ~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~-~v~~~~f~~lL~yiYt~~~~~~~~~~~~ll~~A~~ 84 (705)
+.|.|.+..|-..=.||+..+.... +......+|+|. ..+-.+|+=+++|+......++..|+..+|--|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~-------~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~F 86 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYI-------NDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEF 86 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcc-------cccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhh
Confidence 5699999999999999999996510 011223556665 68999999999999998888999999999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCChhHHHH
Q psy11551 85 YIVPHLARACVTYLETSLTA----------KNACLLLSQSRLFEEPDLMQR 125 (705)
Q Consensus 85 ~~~~~l~~~c~~~l~~~l~~----------~n~~~~~~~A~~~~~~~L~~~ 125 (705)
++|+.|.+.|..|+..+++. -|--.+..+|..+.-.+|..+
T Consensus 87 L~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~ 137 (317)
T PF11822_consen 87 LQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAA 137 (317)
T ss_pred hccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHh
Confidence 99999999999999764321 111245567777776666654
No 46
>KOG3473|consensus
Probab=94.09 E-value=0.19 Score=41.03 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=56.6
Q ss_pred cCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCC-ccCeEEcCCCCHHHHHHHHHhH-----hCCc------ccCC
Q psy11551 4 HTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAE-NKEEIEVPDVEPSAFLTLLKYL-----YCDD------IQLE 71 (705)
Q Consensus 4 ~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e-~~~~i~l~~v~~~~f~~lL~yi-----Yt~~------~~~~ 71 (705)
+|..|-.-|-+ |.-|+-.|+||.|+. -+.+ .++++.+.+++...++.+.+|+ |++. .+|+
T Consensus 25 Ddhefiikre~-AmtSgTiraml~gpg-------~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip 96 (112)
T KOG3473|consen 25 DDHEFIIKREH-AMTSGTIRAMLSGPG-------VFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP 96 (112)
T ss_pred CCcEEEEeehh-hhhhhHHHHHHcCCc-------cccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCC
Confidence 45555555544 456999999999963 2333 3488999999999999999987 4554 3577
Q ss_pred hhhHHHHHHHHhhcC
Q psy11551 72 ADTVLATLYVAKKYI 86 (705)
Q Consensus 72 ~~~~~~ll~~A~~~~ 86 (705)
++-+.+||.+|+++.
T Consensus 97 pemaleLL~aAn~Le 111 (112)
T KOG3473|consen 97 PEMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHHHHhhhhc
Confidence 888999999998875
No 47
>KOG2714|consensus
Probab=93.86 E-value=0.12 Score=54.02 Aligned_cols=85 Identities=20% Similarity=0.156 Sum_probs=62.8
Q ss_pred CeecCeeeehhHHHHhcCC--HHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCChhhHHHH
Q psy11551 1 MIRHTQTIPAHKYVLATGS--SVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLAT 78 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLaarS--~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~~~~~~l 78 (705)
|.|||+.|.-.+.-|+-.. .||.+++.+.+. ..+.....|. -|=+|+.|..+|+|+-||++++..-....+
T Consensus 15 lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~------s~~~~~~~iF-IDRDPdlFaviLn~LRTg~L~~~g~~~~~l 87 (465)
T KOG2714|consen 15 LNVGGRIFETSAQTLTWIPRDSFFSALLSGRIN------SLKDESGAIF-IDRDPDLFAVILNLLRTGDLDASGVFPERL 87 (465)
T ss_pred EecCceEEecchhhhhcCCcchHHHHHhcCccc------cccCCCCceE-ecCCchHHHHHHHHHhcCCCCCccCchhhh
Confidence 4699999999999998765 599999988521 0111222333 368999999999999999999865444444
Q ss_pred -HHHHhhcCcHHHHH
Q psy11551 79 -LYVAKKYIVPHLAR 92 (705)
Q Consensus 79 -l~~A~~~~~~~l~~ 92 (705)
..-|.+|++..+..
T Consensus 88 lhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 88 LHDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhhcCcHHHHH
Confidence 44899999988854
No 48
>KOG1724|consensus
Probab=93.83 E-value=0.32 Score=45.02 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=69.7
Q ss_pred ecCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCccc-------------
Q psy11551 3 RHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQ------------- 69 (705)
Q Consensus 3 v~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~------------- 69 (705)
-+|+.|.+-..+. ..|..+.+++... +.......|++++|...+|..++.|++-..-+
T Consensus 12 sDG~~f~ve~~~a-~~s~~i~~~~~~~--------~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~ 82 (162)
T KOG1724|consen 12 SDGEIFEVEEEVA-RQSQTISAHMIED--------GCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEE 82 (162)
T ss_pred cCCceeehhHHHH-HHhHHHHHHHHHc--------CCCccCCccccCccCHHHHHHHHHHHHHccccccccccccccccc
Confidence 4788999998887 5588888888752 12222258999999999999999999974321
Q ss_pred ------------CChhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q psy11551 70 ------------LEADTVLATLYVAKKYIVPHLARACVTYLETSL 102 (705)
Q Consensus 70 ------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 102 (705)
++...+.+++.+|+++.++.|...|++.+...+
T Consensus 83 ~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 83 TDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred CCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 123457889999999999999999988776644
No 49
>KOG1665|consensus
Probab=92.67 E-value=0.4 Score=45.69 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=67.3
Q ss_pred EEEEeCCCCCceeEeeehhhhhccC--HHHHHhhcCCC--CCCc-ceEEcCCCCHHHHHHHHHhHccCCcc-CChhhHHH
Q psy11551 244 VKFVVGSSGHTQTIPAHKYVLATGS--SVFYAMFYGGL--AENK-EEIEVPDVEPSAFLTLLKYLYCDDIQ-LEADTVLA 317 (705)
Q Consensus 244 v~l~v~~~~~~~~~~aHk~iLaa~S--~yF~~mf~~~~--~e~~-~~i~l~~v~~~~f~~lL~yiYt~~~~-i~~~~v~~ 317 (705)
|.+.++| +.|..-.--|..+- ....+||.+.- .+.+ .--.+-|=+|..|+.||+|+-.|.+. .+.-++..
T Consensus 11 vrlnigG----k~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 11 VRLNIGG----KKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred heeecCC----eEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHH
Confidence 5677777 77777666665543 46788997642 2222 33444477999999999999999986 46668999
Q ss_pred HHHHHhhcChhHHHHHHHH
Q psy11551 318 TLYVAKKYIVPHLARACVT 336 (705)
Q Consensus 318 ll~~A~~~~l~~L~~~c~~ 336 (705)
+++.|++|++-.|++..++
T Consensus 87 vLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHhhHHhhHhHHhHHhh
Confidence 9999999999999988777
No 50
>KOG2715|consensus
Probab=90.27 E-value=0.97 Score=41.12 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=73.6
Q ss_pred ccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCC----Cc-ceEEcCCCCHHHHHHHHHhHccCCccCChhhHH
Q psy11551 242 ADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAE----NK-EEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVL 316 (705)
Q Consensus 242 ~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e----~~-~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~v~ 316 (705)
.=|.+.||| ..|-.-|.-|..-+.-|-.-|-.+-.+ .+ .---+-|=+|..|..+|+|+-.|++.++.-.-.
T Consensus 21 ~wVRlNVGG----t~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~ee 96 (210)
T KOG2715|consen 21 LWVRLNVGG----TVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEE 96 (210)
T ss_pred EEEEEecCC----EEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhh
Confidence 347778888 999999999988886665555433211 11 223344678999999999999999999885555
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhcC
Q psy11551 317 ATLYVAKKYIVPHLARACVTYLETSL 342 (705)
Q Consensus 317 ~ll~~A~~~~l~~L~~~c~~~l~~~l 342 (705)
.+|.-|++|.++.|++...+.|.+..
T Consensus 97 GvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred ccchhhhccCChHHHHHHHHHHHHHh
Confidence 69999999999999999888877643
No 51
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=2.8 Score=36.36 Aligned_cols=95 Identities=11% Similarity=0.149 Sum_probs=70.7
Q ss_pred cEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCcceEEcCCCCHHHHHHHHHhHccCCcc-------------
Q psy11551 243 DVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQ------------- 309 (705)
Q Consensus 243 Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~------------- 309 (705)
-+.+..++ |..|.+.+.+ |-+|-..++|+.. +.+..-.+..+.|...+|..+++|+-..+-.
T Consensus 3 ~i~l~s~d---ge~F~vd~~i-AerSiLikN~l~d-~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 3 MIELESID---GEIFRVDENI-AERSILIKNMLCD-STACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred ceEEEecC---CcEEEehHHH-HHHHHHHHHHhcc-ccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 35566555 4788887765 5688888888864 3334456778899999999999999654321
Q ss_pred ------------CChhhHHHHHHHHhhcChhHHHHHHHHHHHhcC
Q psy11551 310 ------------LEADTVLATLYVAKKYIVPHLARACVTYLETSL 342 (705)
Q Consensus 310 ------------i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l 342 (705)
++.+.+.++.-+|+++.++.|.+.|+..+...+
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 233556888999999999999999999877654
No 52
>KOG1778|consensus
Probab=89.20 E-value=0.34 Score=50.01 Aligned_cols=129 Identities=22% Similarity=0.323 Sum_probs=103.2
Q ss_pred eeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHHHHHHHhHccCCccCChhh--HHHHHHHHhhcChhHHH
Q psy11551 255 QTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAFLTLLKYLYCDDIQLEADT--VLATLYVAKKYIVPHLA 331 (705)
Q Consensus 255 ~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f~~lL~yiYt~~~~i~~~~--v~~ll~~A~~~~l~~L~ 331 (705)
..+++|+.+|+..|+.|..+....-..+. ..+.+..++...+..+..++|.. +.....+ ...++.+...+.++..+
T Consensus 36 ~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~~ 114 (319)
T KOG1778|consen 36 DLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQPK 114 (319)
T ss_pred hhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCcc
Confidence 78999999999999999887765511122 66777788889999999999998 4433333 34466666788888888
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCcccc
Q psy11551 332 RACVTYLET-SLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFV 384 (705)
Q Consensus 332 ~~c~~~l~~-~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~ 384 (705)
..|...+.. .++..|+..++..+..+....|...+...+...+.....++...
T Consensus 115 ~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~ 168 (319)
T KOG1778|consen 115 ADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWF 168 (319)
T ss_pred ccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCce
Confidence 888887776 66888999999999999999999999999999999888765554
No 53
>KOG1665|consensus
Probab=88.81 E-value=1 Score=43.08 Aligned_cols=90 Identities=20% Similarity=0.164 Sum_probs=68.8
Q ss_pred CeecCeeeehhHHHHhcCCH--HHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccC-ChhhHHH
Q psy11551 1 MIRHTQTIPAHKYVLATGSS--VFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQL-EADTVLA 77 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLaarS~--~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~-~~~~~~~ 77 (705)
+.++|++|-.-+--|.-|-| .+.+||.+.-+ .-++++.-..+-|=+|.-|+-+|+|+-.|.++. +.-++..
T Consensus 13 lnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~------~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 13 LNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGA------MCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred eecCCeEEEEeehhhcccCchHHHHHHHccCCC------ccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHH
Confidence 35789998888877777766 68899988410 012233334555789999999999999999864 4457899
Q ss_pred HHHHHhhcCcHHHHHHHHH
Q psy11551 78 TLYVAKKYIVPHLARACVT 96 (705)
Q Consensus 78 ll~~A~~~~~~~l~~~c~~ 96 (705)
+|+.|++|++-.+++..+.
T Consensus 87 vLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHhhHHhhHhHHhHHhh
Confidence 9999999999999988776
No 54
>KOG2715|consensus
Probab=86.12 E-value=1.5 Score=39.90 Aligned_cols=96 Identities=18% Similarity=0.141 Sum_probs=69.3
Q ss_pred CeecCeeeehhHHHHhcCCHHH-HHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCChhhHHHHH
Q psy11551 1 MIRHTQTIPAHKYVLATGSSVF-YAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATL 79 (705)
Q Consensus 1 l~v~g~~~~~Hk~iLaarS~~F-~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~~~~~~ll 79 (705)
+.|||+.|..-|.-|+.-+.-| ..+...++ ..+....+ .--.+-|=+|.-|.-+|+|+-.|++.++.-.-+.+|
T Consensus 25 lNVGGt~f~TtktTl~rdp~sFl~rl~q~~~---~l~sdrDe--tGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL 99 (210)
T KOG2715|consen 25 LNVGGTVFLTTKTTLPRDPKSFLYRLCQREK---DLPSDRDE--TGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVL 99 (210)
T ss_pred EecCCEEEEeeeeccccCcHHHHHHHHhccc---CCCCCccc--cCceEeccCcchHHHHHHHHhcchhhhhhhhhhccc
Confidence 4699999999999998887455 44444421 01111111 112344678999999999999999988875555699
Q ss_pred HHHhhcCcHHHHHHHHHHHHhc
Q psy11551 80 YVAKKYIVPHLARACVTYLETS 101 (705)
Q Consensus 80 ~~A~~~~~~~l~~~c~~~l~~~ 101 (705)
.-|+.|.++.|.....+.|...
T Consensus 100 ~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 100 EEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhhhccCChHHHHHHHHHHHHH
Confidence 9999999999988887777653
No 55
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=84.70 E-value=1.7 Score=35.03 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=28.6
Q ss_pred cCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCC
Q psy11551 309 QLEADTVLATLYVAKKYIVPHLARACVTYLETSLT 343 (705)
Q Consensus 309 ~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~ 343 (705)
.++.+.+.+++.+|++++++.|.+.|+.++...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 35778899999999999999999999999887654
No 56
>KOG1778|consensus
Probab=80.31 E-value=1.2 Score=45.99 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=92.9
Q ss_pred cCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCChhh--HHHHHHH
Q psy11551 4 HTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADT--VLATLYV 81 (705)
Q Consensus 4 ~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~~~--~~~ll~~ 81 (705)
.+..+++|+.+|...|+.|..+.... ........+.+..++...+..+..++|.. +...+.. ...++.+
T Consensus 34 ~~~~~~~~s~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 34 VKDLIPAHSLVLGPASPVFKKVLKQP--------CRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhHHHHhcccccchHHHHHHhhh--------cchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhh
Confidence 45568999999999999998877652 11223355667788899999999999987 4333322 3446677
Q ss_pred HhhcCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q psy11551 82 AKKYIVPHLARACVTYLET-SLTAKNACLLLSQSRLFEEPDLMQRCWEVID 131 (705)
Q Consensus 82 A~~~~~~~l~~~c~~~l~~-~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~ 131 (705)
...+.++..+..|...+.. .++..++..++..+..+....|...+...+.
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~ 155 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM 155 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 7889999999999888887 7888999999999999999999888877775
No 57
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=76.17 E-value=3 Score=33.59 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=30.5
Q ss_pred eccchhhhHHHhhccCCchhHHHHHHHHHHHhcChhhH
Q psy11551 520 LEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNA 557 (705)
Q Consensus 520 ~~~~~~~~~l~~A~~~~l~~L~~~c~~~l~~~l~~~n~ 557 (705)
++.+...+++.+|++++++.|.+.|++++...+...++
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~ 48 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSP 48 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-H
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCH
Confidence 35667899999999999999999999999888766554
No 58
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.83 E-value=10 Score=33.00 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=65.1
Q ss_pred ecCeeeehhHHHHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccC------------
Q psy11551 3 RHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQL------------ 70 (705)
Q Consensus 3 v~g~~~~~Hk~iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~------------ 70 (705)
.+|..|.+.+.+ |-||-..+.|+.. ..+..-.|.+++|...+|..++.|+--++-..
T Consensus 9 ~dge~F~vd~~i-AerSiLikN~l~d----------~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 9 IDGEIFRVDENI-AERSILIKNMLCD----------STACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred cCCcEEEehHHH-HHHHHHHHHHhcc----------ccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 578888888776 5788889998886 34445557888999999999999986433211
Q ss_pred -------------ChhhHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q psy11551 71 -------------EADTVLATLYVAKKYIVPHLARACVTYLETS 101 (705)
Q Consensus 71 -------------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 101 (705)
+.+.+.++.-+|+++.++.|.+.|+..+...
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaem 121 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEM 121 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 1223556777889999999999888777653
No 59
>KOG2723|consensus
Probab=60.17 E-value=29 Score=33.92 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=58.1
Q ss_pred CCccE-EEEeCCCCCceeEeeehh-hhhccCHHHHHhhcCCCCCCc---ceEEcCCCCHHHHHHHHHhHccCCccCCh--
Q psy11551 240 LMADV-KFVVGSSGHTQTIPAHKY-VLATGSSVFYAMFYGGLAENK---EEIEVPDVEPSAFLTLLKYLYCDDIQLEA-- 312 (705)
Q Consensus 240 ~~~Dv-~l~v~~~~~~~~~~aHk~-iLaa~S~yF~~mf~~~~~e~~---~~i~l~~v~~~~f~~lL~yiYt~~~~i~~-- 312 (705)
.+.|+ .+.||| ..|..-.. ..+-.-....+||++...-.+ ....| |=+-..|+.||+|+-+....++.
T Consensus 6 ~~~~~v~lnvGG----~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f 80 (221)
T KOG2723|consen 6 EYPDVVELNVGG----AIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDF 80 (221)
T ss_pred ccCCceeeccCC----eEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhh
Confidence 34554 455665 54443333 233344556667765322111 33444 44667999999999996666655
Q ss_pred hhHHHHHHHHhhcChhHHHHHHHH
Q psy11551 313 DTVLATLYVAKKYIVPHLARACVT 336 (705)
Q Consensus 313 ~~v~~ll~~A~~~~l~~L~~~c~~ 336 (705)
.++..+...|++|+++.+.....+
T Consensus 81 ~e~~~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 81 AEVERLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred hhHHHHHHHHHHHccccHHHHHhc
Confidence 678899999999999977665544
No 60
>KOG3840|consensus
Probab=45.60 E-value=94 Score=31.59 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=59.3
Q ss_pred CCccEEEEeCCCCCceeEeeehhhhhccC-HHHHHhhcCCCCC--Cc--ceEEc-CCCCHHHHHHHHHhHccCCccCCh-
Q psy11551 240 LMADVKFVVGSSGHTQTIPAHKYVLATGS-SVFYAMFYGGLAE--NK--EEIEV-PDVEPSAFLTLLKYLYCDDIQLEA- 312 (705)
Q Consensus 240 ~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S-~yF~~mf~~~~~e--~~--~~i~l-~~v~~~~f~~lL~yiYt~~~~i~~- 312 (705)
..--++..+.+ ..|-+-+.+|.+.- ...-+||.++..- .+ ++.++ .+++...|++||+|--+|.+..++
T Consensus 94 ~~~~~t~lvd~----~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~ 169 (438)
T KOG3840|consen 94 EGDKVCLLVDQ----TRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSS 169 (438)
T ss_pred CCcceEEEeee----EEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCC
Confidence 33346777776 88999888886542 2345677665321 11 56666 479999999999999999987644
Q ss_pred hhHHHHHHHHhhcChh
Q psy11551 313 DTVLATLYVAKKYIVP 328 (705)
Q Consensus 313 ~~v~~ll~~A~~~~l~ 328 (705)
-.+.++-+++|++.++
T Consensus 170 vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 170 VSVSELREACDYLLVP 185 (438)
T ss_pred CchHHHHhhcceEEee
Confidence 3567777788877664
No 61
>KOG2723|consensus
Probab=44.36 E-value=34 Score=33.50 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=54.6
Q ss_pred CeecCeeeehhHH-HHhcCCHHHHHhhcCCCCCccccCCcCCccCeEEcCCCCHHHHHHHHHhHhCCcccCCh--hhHHH
Q psy11551 1 MIRHTQTIPAHKY-VLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEA--DTVLA 77 (705)
Q Consensus 1 l~v~g~~~~~Hk~-iLaarS~~F~~~f~~~~~~~~~~~~~~e~~~~i~l~~v~~~~f~~lL~yiYt~~~~~~~--~~~~~ 77 (705)
|.|||..+..-.. ..+-.-..+..||++... -.+..+....| |=+-..|+.+|+|+-+..+.+++ .++..
T Consensus 13 lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~------~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 13 LNVGGAIYTTRLGTLTKFPDSMLARMFSGELP------LLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred eccCCeEEEeeccceeechHHHHHhhcCCCCC------ccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 3567776654444 333344566777776320 11122333333 45677899999999996655555 56788
Q ss_pred HHHHHhhcCcHHHHHH
Q psy11551 78 TLYVAKKYIVPHLARA 93 (705)
Q Consensus 78 ll~~A~~~~~~~l~~~ 93 (705)
+.+.|++|+++.....
T Consensus 86 L~rEA~f~~l~~~~~~ 101 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTY 101 (221)
T ss_pred HHHHHHHHccccHHHH
Confidence 9999999999976543
No 62
>KOG3840|consensus
Probab=31.03 E-value=52 Score=33.36 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=53.3
Q ss_pred eecCeeeehhHHHHhcCCH-HHHHhhcCCCCCccccCCcCC--ccCeEEcC-CCCHHHHHHHHHhHhCCcccCCh-hhHH
Q psy11551 2 IRHTQTIPAHKYVLATGSS-VFYAMFYGGTYNLIYYGGLAE--NKEEIEVP-DVEPSAFLTLLKYLYCDDIQLEA-DTVL 76 (705)
Q Consensus 2 ~v~g~~~~~Hk~iLaarS~-~F~~~f~~~~~~~~~~~~~~e--~~~~i~l~-~v~~~~f~~lL~yiYt~~~~~~~-~~~~ 76 (705)
.|++.+|-+-+.+|.+.-. ..-.||.+++ .+.. ...+.++. ++...+|..+|+|--+|.+.-++ -.+.
T Consensus 101 lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~-------~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp 173 (438)
T KOG3840|consen 101 LVDQTRFLVSQRLLTSKPDTMLGRMFSMGA-------DLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS 173 (438)
T ss_pred EeeeEEEEeeeeeecCCcchhhhhhhcccc-------cccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence 5778888888888866421 3456676642 1221 33566665 79999999999999999875443 2455
Q ss_pred HHHHHHhhcCcH
Q psy11551 77 ATLYVAKKYIVP 88 (705)
Q Consensus 77 ~ll~~A~~~~~~ 88 (705)
+|-+++|++.++
T Consensus 174 ELrEACDYLlip 185 (438)
T KOG3840|consen 174 ELREACDYLLVP 185 (438)
T ss_pred HHHhhcceEEee
Confidence 666666665544
Done!