RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11551
(705 letters)
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab) or
POZ (for Pox virus and Zinc finger) domain is present
near the N-terminus of a fraction of zinc finger
(pfam00096) proteins and in proteins that contain the
pfam01344 motif such as Kelch and a family of pox virus
proteins. The BTB/POZ domain mediates homomeric
dimerisation and in some instances heteromeric
dimerisation. The structure of the dimerised PLZF
BTB/POZ domain has been solved and consists of a tightly
intertwined homodimer. The central scaffolding of the
protein is made up of a cluster of alpha-helices flanked
by short beta-sheets at both the top and bottom of the
molecule. POZ domains from several zinc finger proteins
have been shown to mediate transcriptional repression
and to interact with components of histone deacetylase
co-repressor complexes including N-CoR and SMRT. The POZ
or BTB domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 91.9 bits (229), Expect = 2e-22
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 234 AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEP 293
+ N + DV VVG + AHK VLA S F A+F G + EI + DV P
Sbjct: 3 ELRENGELCDVTLVVG----DKEFHAHKAVLAACSPYFKALFTGNK---EVEITLEDVSP 55
Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 338
F LL+++Y +++ + V L +A K +P L C +L
Sbjct: 56 EDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEEFL 100
Score = 78.4 bits (194), Expect = 1e-17
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 5 TQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLY 64
+ AHK VLA S F A+F G + EI + DV P F LL+++Y
Sbjct: 19 DKEFHAHKAVLAACSPYFKALFTGNK------------EVEITLEDVSPEDFEALLEFIY 66
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 98
+++ + V L +A K +P L C +L
Sbjct: 67 TGKLEITEENVDDLLALADKLQIPALIDKCEEFL 100
Score = 36.1 bits (84), Expect = 0.008
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 548
++Y +++ + V L +A K +P L C +L
Sbjct: 63 EFIYTGKLEITEENVDDLLALADKLQIPALIDKCEEFL 100
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac. Domain
in Broad-Complex, Tramtrack and Bric a brac. Also known
as POZ (poxvirus and zinc finger) domain. Known to be a
protein-protein interaction motif found at the N-termini
of several C2H2-type transcription factors as well as
Shaw-type potassium channels. Known structure reveals a
tightly intertwined dimer formed via interactions
between N-terminal strand and helix structures. However
in a subset of BTB/POZ domains, these two secondary
structures appear to be missing. Be aware SMART predicts
BTB/POZ domains without the beta1- and alpha1-secondary
structures.
Length = 97
Score = 88.9 bits (221), Expect = 2e-21
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 243 DVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAE-NKEEIEVPDVEPSAFLTLLK 301
DV VVG + AHK VLA S F A+F E +K EI + DV P F LL
Sbjct: 1 DVTLVVGG----KKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLN 56
Query: 302 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 342
+LY + L + V L +A +P L C +L L
Sbjct: 57 FLYTGKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97
Score = 77.7 bits (192), Expect = 2e-17
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
+ AHK VLA S F A+F +K EI + DV P F LL +LY
Sbjct: 9 KKFHAHKAVLAAHSPYFKALFSSDFKE--------SDKSEIYLDDVSPEDFRALLNFLYT 60
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 102
+ L + V L +A +P L C +L L
Sbjct: 61 GKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97
Score = 36.1 bits (84), Expect = 0.008
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 552
+LY + L + V L +A +P L C +L L
Sbjct: 56 NFLYTGKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch. The BACK domain is
found juxtaposed to the BTB domain; they are separated
by as little as two residues.
Length = 101
Score = 60.4 bits (147), Expect = 3e-11
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 348 CL-LLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNC-KEM 405
CL + + +L ++ I SE F+++ + L + + + LN E
Sbjct: 1 CLGIRRFADAHGLEELAEKALRFILQNFSEVSSSEEFLELPLEQLLELLSSDDLNVSSEE 60
Query: 406 HLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 455
+FEA L W + +R R L L VR+P +S
Sbjct: 61 EVFEAVLRWVKHDPEKR---------REHLPELLEHVRLPLLSPDYLLEV 101
Score = 60.4 bits (147), Expect = 3e-11
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 558 CL-LLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNC-KEM 615
CL + + +L ++ I SE F+++ + L + + + LN E
Sbjct: 1 CLGIRRFADAHGLEELAEKALRFILQNFSEVSSSEEFLELPLEQLLELLSSDDLNVSSEE 60
Query: 616 HLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 665
+FEA L W + +R R L L VR+P +S
Sbjct: 61 EVFEAVLRWVKHDPEKR---------REHLPELLEHVRLPLLSPDYLLEV 101
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 47.5 bits (113), Expect = 2e-05
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 234 AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVP-DVE 292
F + D ++ + G I HK +L++ S F MF EN EI + D +
Sbjct: 2 YSFELQKFCDESIIIVNGG--GIIKVHKIILSSSSEYFKKMFKNNFKEN--EINLNIDYD 57
Query: 293 PSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACL 349
+F ++KY+Y I + ++ V L +A I+ L C+ Y+ + N C+
Sbjct: 58 --SFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN-CI 111
Score = 39.8 bits (93), Expect = 0.005
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 7 TIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVP-DVEPSAFLTLLKYLYC 65
I HK +L++ S F MF N + EI + D + +F ++KY+Y
Sbjct: 22 IIKVHKIILSSSSEYFKKMFKN---NFK--------ENEINLNIDYD--SFNEVIKYIYT 68
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACL 109
I + ++ V L +A I+ L C+ Y+ + N C+
Sbjct: 69 GKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN-CI 111
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch. This domain is found
associated with pfam00651 and pfam01344. The BACK domain
is found juxtaposed to the BTB domain; they are
separated by as little as two residues. This family
appears to be closely related to the BTB domain (Finn
RD, personal observation).
Length = 101
Score = 42.1 bits (100), Expect = 6e-05
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 360 PDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLN-CKEMHLFEAALNWANAE 418
+L + I KSE F+++ L + + + LN E +FEA + W
Sbjct: 14 EELAEVALRFILKNFLEVSKSEEFLELSKEQLLELLSSDELNVPSEEEVFEAVIKW---- 69
Query: 419 CVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFAN 454
V+ D+E + +L VR+P +S +
Sbjct: 70 -VKHDVENRKKHLPELLSA----VRLPLLSPEYLLD 100
Score = 42.1 bits (100), Expect = 6e-05
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 570 PDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLN-CKEMHLFEAALNWANAE 628
+L + I KSE F+++ L + + + LN E +FEA + W
Sbjct: 14 EELAEVALRFILKNFLEVSKSEEFLELSKEQLLELLSSDELNVPSEEEVFEAVIKW---- 69
Query: 629 CVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFAN 664
V+ D+E + +L VR+P +S +
Sbjct: 70 -VKHDVENRKKHLPELLSA----VRLPLLSPEYLLD 100
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 34.6 bits (79), Expect = 0.20
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 233 AAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK--EEIEVPD 290
+ + +++++ DV +G + I AHK +LA GS F +F + + +
Sbjct: 17 SNLLDDDILCDVIITIGDG---EEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQM 73
Query: 291 VEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLL 350
+ A +++YLY + + + V+ L A ++ L C +Y++ T + C+
Sbjct: 74 FDKDAVKNIVQYLY--NRHISSMNVIDVLKCADYLLIDDLVTDCESYIK-DYTNHDTCIY 130
Query: 351 LSQSRLFE 358
+ RL+E
Sbjct: 131 MYH-RLYE 137
Score = 30.0 bits (67), Expect = 5.5
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 2 IRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLK 61
I + I AHK +LA GS F +F T +I + + + + + A +++
Sbjct: 32 IGDGEEIKAHKTILAAGSKYFRTLF---TTPMI----IRDLVTRVNLQMFDKDAVKNIVQ 84
Query: 62 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFE 118
YLY + + + V+ L A ++ L C +Y++ T + C+ + RL+E
Sbjct: 85 YLY--NRHISSMNVIDVLKCADYLLIDDLVTDCESYIK-DYTNHDTCIYMYH-RLYE 137
>gnl|CDD|236723 PRK10594, PRK10594, murein L,D-transpeptidase; Provisional.
Length = 608
Score = 32.0 bits (73), Expect = 1.2
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 154 ETLKNGNL-PLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTP 212
TL+ G VP L+ I QR + ++P + +V + SA V
Sbjct: 233 ATLRPGQWSNDVPA----LREILQRTGMLDGGPKITLPGDDTPTDAVV-SPSAVTVETAE 287
Query: 213 IPNTGDPNWQASKPTVRERNAAMFNNELMADVK 245
SKP R A ++NEL+ VK
Sbjct: 288 TKPMDKQTTSRSKPAPAVRAA--YDNELVEAVK 318
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 31.0 bits (70), Expect = 2.5
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 163 LVPVPSSQ----LQTISQRESNMQITQPAS-VPNSPLASPNIV--------QTTSASPVN 209
L+P S LQ + + E+ + ++ PA+ + N+P A+P Q
Sbjct: 361 LLPSASDAESALLQRVERIETRLDMSIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPV 420
Query: 210 FTPIPNTGDPN-------WQASKPTVRERNAAMFNNELM---ADVKFVVGSS---GHTQT 256
P P +G+PN W + VR+R+ E+M A V+ + G++ H
Sbjct: 421 LAPTPASGEPNAAAVRSMWSTVRDKVRQRSR---TTEVMLAGATVRALEGNTLVLTHESA 477
Query: 257 IPA 259
A
Sbjct: 478 PLA 480
>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase
suppressor of ras) (CNK) pleckstrin homology (PH)
domain. CNK family members function as protein
scaffolds, regulating the activity and the subcellular
localization of RAS activated RAF. There is a single CNK
protein present in Drosophila and Caenorhabditis elegans
in contrast to mammals which have 3 CNK proteins (CNK1,
CNK2, and CNK3). All of the CNK members contain a
sterile a motif (SAM), a conserved region in CNK (CRIC)
domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with
the exception of CNK3, a PH domain. A CNK2 splice
variant CNK2A also has a PDZ domain-binding motif at its
C terminus and Drosophila CNK (D-CNK) also has a domain
known as the Raf-interacting region (RIR) that mediates
binding of the Drosophila Raf kinase. This cd contains
CNKs from mammals, chickens, amphibians, fish, and
crustacea. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 114
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 364 QRCWEVIDAQA------EMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEA 410
+R W V+ + K+EGF+++ +E A E CK+ + F+A
Sbjct: 34 KRYWFVLKGSSLYWYNNPQDEKAEGFINLPDFKIER--ASE---CKKKYAFKA 81
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 574 QRCWEVIDAQA------EMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEA 620
+R W V+ + K+EGF+++ +E A E CK+ + F+A
Sbjct: 34 KRYWFVLKGSSLYWYNNPQDEKAEGFINLPDFKIER--ASE---CKKKYAFKA 81
>gnl|CDD|165431 PHA03160, PHA03160, hypothetical protein; Provisional.
Length = 499
Score = 30.4 bits (68), Expect = 3.7
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 157 KNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTP--IP 214
KN + L P+ SQ + QP V +P+ +P++ P P +P
Sbjct: 407 KNDHHLLPPLACSQQLPM----------QPLHVQQAPMQAPHVAPPPMQPPHVQQPRVLP 456
Query: 215 NTGDPNWQASKPTVRE 230
+T + +A KP+ +E
Sbjct: 457 STDGASNEAPKPSAQE 472
>gnl|CDD|226439 COG3926, zliS, Lysozyme family protein [General function prediction
only].
Length = 252
Score = 29.0 bits (65), Expect = 7.3
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 154 ETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASP 207
T G V ++++ I+Q + Q+ QPA PN + S +P
Sbjct: 151 GTFGKGWTARV----AEVRAIAQAWATDQVPQPAPFPNGGQGKAVVDDAPSTAP 200
>gnl|CDD|216423 pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.
Length = 318
Score = 29.1 bits (66), Expect = 7.5
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 14 VLATGSSVFYAMFYGGTYNLIYYGG 38
LA GSSV MF+GGT N + G
Sbjct: 258 FLARGSSVNLYMFHGGT-NFGFTNG 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.393
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,221,780
Number of extensions: 3411655
Number of successful extensions: 2594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2580
Number of HSP's successfully gapped: 30
Length of query: 705
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 601
Effective length of database: 6,324,786
Effective search space: 3801196386
Effective search space used: 3801196386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)