RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11551
(705 letters)
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 154 bits (391), Expect = 1e-44
Identities = 85/109 (77%), Positives = 94/109 (86%)
Query: 234 AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEP 293
+MFNNELMADV FVVG G T+T+PAHKYVLA GSSVFYAMFYG LAE K EI +PDVEP
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEP 60
Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 342
+AFL LLKY+Y D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 61 AAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
Score = 121 bits (305), Expect = 7e-33
Identities = 69/97 (71%), Positives = 77/97 (79%), Gaps = 9/97 (9%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
+T+PAHKYVLA GSSVFYAMFYG LAE K EI +PDVEP+AFL LLKY+Y
Sbjct: 22 RTVPAHKYVLAVGSSVFYAMFYGD---------LAEVKSEIHIPDVEPAAFLILLKYMYS 72
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 102
D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 73 DEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
Score = 53.0 bits (128), Expect = 8e-09
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 552
+Y+Y D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 68 KYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 120 bits (302), Expect = 1e-31
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 233 AAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEVPDV 291
++ N D V Q AHK +LA S VF AMF + E+K+ +E+ DV
Sbjct: 26 GGLWENSRFTDCCLCVAG----QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDV 81
Query: 292 EPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 351
EP F ++ ++Y L A KY + L C L ++L+ +NA +L
Sbjct: 82 EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 141
Query: 352 SQSRLFEEPDLMQRCWEVIDAQAEMALKSEG 382
+ L L + + I+ A L++ G
Sbjct: 142 ILADLHSADQLKTQAVDFINYHATDVLETSG 172
Score = 94.2 bits (235), Expect = 1e-22
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKE-EIEVPDVEPSAFLTLLKYLY 64
Q AHK +LA S VF AMF + E+K+ +E+ DVEP F ++ ++Y
Sbjct: 44 QEFQAHKAILAARSPVFSAMFEHE---------MEESKKNRVEINDVEPEVFKEMMCFIY 94
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQ 124
L A KY + L C L ++L+ +NA +L + L L
Sbjct: 95 TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 154
Query: 125 RCWEVID 131
+ + I+
Sbjct: 155 QAVDFIN 161
Score = 48.4 bits (116), Expect = 9e-07
Identities = 18/82 (21%), Positives = 32/82 (39%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEP 570
++Y L A KY + L C L ++L+ +NA +L + L
Sbjct: 91 CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 150
Query: 571 DLMQRCWEVIDAQAEMALKSEG 592
L + + I+ A L++ G
Sbjct: 151 QLKTQAVDFINYHATDVLETSG 172
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 114 bits (289), Expect = 6e-29
Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 17/225 (7%)
Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAE---NKEEIEVPDV 291
D V+ + IP K +LA S + + +IE+ +
Sbjct: 25 FREESRFCDAHLVLDG----EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 80
Query: 292 EPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 351
+L Y++ I+L DT+ + A ++ L C +LE + A+N +
Sbjct: 81 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIR 140
Query: 352 SQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLN-CKEMHLFEA 410
+ + + E ++ +E F+++ L+ V + E LN E ++FEA
Sbjct: 141 DFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEA 200
Query: 411 ALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 455
+ W + D E +++ + + + + + + +
Sbjct: 201 VIRW-----IAHDTE----IRKVHMKDVMSALWVSGLDSSYLREQ 236
Score = 84.2 bits (209), Expect = 3e-18
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 8/126 (6%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAE-NKEEIEVPDVEPSAFLTLLKYLY 64
+ IP K +LA S + + +IE+ + +L Y++
Sbjct: 41 EEIPVQKNILAAASPYIRTKLNYN-------PPKDDGSTYKIELEGISVMVMREILDYIF 93
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQ 124
I+L DT+ + A ++ L C +LE + A+N + + + +
Sbjct: 94 SGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHY 153
Query: 125 RCWEVI 130
E +
Sbjct: 154 LATEYL 159
Score = 61.8 bits (151), Expect = 8e-11
Identities = 27/155 (17%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPD 571
Y++ I+L DT+ + A ++ L C +LE + A+N + + +
Sbjct: 91 YIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHH 150
Query: 572 LMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLN-CKEMHLFEAALNWANAECV 630
+ E ++ +E F+++ L+ V + E LN E ++FEA + W +
Sbjct: 151 VHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRW-----I 205
Query: 631 RRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 665
D E +++ + + + + + + +
Sbjct: 206 AHDTE----IRKVHMKDVMSALWVSGLDSSYLREQ 236
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 110 bits (277), Expect = 1e-28
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEVPDVEP 293
++ N D V Q AHK +LA S VF AMF + E+K+ +E+ DVEP
Sbjct: 19 LWENSRFTDCCLCVAG----QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEP 74
Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 351
F ++ ++Y L A KY + L C L ++L+ +NA +L
Sbjct: 75 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 132
Score = 89.1 bits (222), Expect = 5e-21
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKE-EIEVPDVEPSAFLTLLKYLY 64
Q AHK +LA S VF AMF + E+K+ +E+ DVEP F ++ ++Y
Sbjct: 35 QEFQAHKAILAARSPVFSAMFEHE---------MEESKKNRVEINDVEPEVFKEMMCFIY 85
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 111
L A KY + L C L ++L+ +NA +L
Sbjct: 86 TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 132
Score = 36.4 bits (85), Expect = 0.009
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 561
++Y L A KY + L C L ++L+ +NA +L
Sbjct: 82 CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 132
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 115 bits (289), Expect = 2e-28
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 233 AAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEVPDV 291
++ N D V Q AHK +LA S VF AMF + E+K+ +E+ DV
Sbjct: 166 GGLWENSRFTDCCLCVAG----QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDV 221
Query: 292 EPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLL 351
EP F ++ ++Y L A KY + L C L ++L+ +NA +L
Sbjct: 222 EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 281
Query: 352 SQSRLFEEPDLMQRCWEVIDAQAEMALKSEG 382
+ L L + + I+ A L++ G
Sbjct: 282 ILADLHSADQLKTQAVDFINYHATDVLETSG 312
Score = 89.6 bits (222), Expect = 1e-19
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKE-EIEVPDVEPSAFLTLLKYLY 64
Q AHK +LA S VF AMF E+K+ +E+ DVEP F ++ ++Y
Sbjct: 184 QEFQAHKAILAARSPVFSAMFEHEM---------EESKKNRVEINDVEPEVFKEMMCFIY 234
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQ 124
L A KY + L C L ++L+ +NA +L + L L
Sbjct: 235 TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 294
Query: 125 RCWEVID 131
+ + I+
Sbjct: 295 QAVDFIN 301
Score = 49.1 bits (117), Expect = 2e-06
Identities = 18/82 (21%), Positives = 32/82 (39%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEP 570
++Y L A KY + L C L ++L+ +NA +L + L
Sbjct: 231 CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 290
Query: 571 DLMQRCWEVIDAQAEMALKSEG 592
L + + I+ A L++ G
Sbjct: 291 QLKTQAVDFINYHATDVLETSG 312
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 109 bits (274), Expect = 9e-27
Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 20/230 (8%)
Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAE-NKEEIE------ 287
L D+ G +G + AH+ VLA + F + G +E +E
Sbjct: 26 QRRQGLFCDITLCFGGAGG-REFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSS 84
Query: 288 VPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNA 347
P EP +++Y+Y I++ +V L +A ++++ L C +L+ L N
Sbjct: 85 EPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN- 143
Query: 348 CL-LLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLN-CKEM 405
C+ + S + ++ L + ++I ++ E F + + + + E
Sbjct: 144 CVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEE 203
Query: 406 HLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 455
LFE L W V+R+ E + L+R+ M
Sbjct: 204 VLFETVLKW-----VQRNAE----ERERYFEELFKLLRLSQMKPTYLTRH 244
Score = 75.4 bits (186), Expect = 4e-15
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAE-NKEEIE------VPDVEPSAFLT 58
+ AH+ VLA + F + G +E +E P EP
Sbjct: 45 REFRAHRSVLAAATEYFTPLLSGQ---------FSESRSGRVEMRKWSSEPGPEPDTVEA 95
Query: 59 LLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACL-LLSQSRLF 117
+++Y+Y I++ +V L +A ++++ L C +L+ L N C+ + S + ++
Sbjct: 96 VIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN-CVAIHSLAHMY 154
Query: 118 EEPDLMQRCWEVI 130
L + ++I
Sbjct: 155 TLSQLALKAADMI 167
Score = 61.5 bits (150), Expect = 1e-10
Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 12/156 (7%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACL-LLSQSRLFEEP 570
Y+Y I++ +V L +A ++++ L C +L+ L N C+ + S + ++
Sbjct: 99 YMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN-CVAIHSLAHMYTLS 157
Query: 571 DLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLN-CKEMHLFEAALNWANAEC 629
L + ++I ++ E F + + + + E LFE L W
Sbjct: 158 QLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKW----- 212
Query: 630 VRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK 665
V+R+ E + L+R+ M
Sbjct: 213 VQRNAE----ERERYFEELFKLLRLSQMKPTYLTRH 244
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 85.0 bits (211), Expect = 1e-19
Identities = 26/117 (22%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFL 297
D VG AH VLA S F ++ G + +P F
Sbjct: 22 KGQYCDATLDVGG----LVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGFAEIFG 74
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQS 354
LL + Y + L + L AK+ VP C ++ + + L QS
Sbjct: 75 LLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQA-QSGLGQS 130
Score = 76.9 bits (190), Expect = 6e-17
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
AH VLA S F ++ G + +P F LL + Y
Sbjct: 35 LVFKAHWSVLACCSHFFQRIYGDG------------TGGSVVLPAGFAEIFGLLLDFFYT 82
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQS 114
+ L + L AK+ VP C ++ + + L QS
Sbjct: 83 GHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQA-QSGLGQS 130
Score = 34.1 bits (79), Expect = 0.049
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQS 564
+ Y + L + L AK+ VP C ++ + + L QS
Sbjct: 79 FFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQA-QSGLGQS 130
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 84.6 bits (210), Expect = 1e-19
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKE-EIEVPDVEP 293
+ + +++ DV VV + AHK VL S +FY++F L N P++ P
Sbjct: 23 LRSRDILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINP 78
Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 341
F LL ++Y + L ++A + A + H+ C +++ S
Sbjct: 79 EGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
Score = 71.5 bits (176), Expect = 3e-15
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKE-EIEVPDVEPSAFLTLLKYLY 64
+ AHK VL S +FY++F L N P++ P F LL ++Y
Sbjct: 39 EQFRAHKTVLMACSGLFYSIFTDQ---------LKRNLSVINLDPEINPEGFNILLDFMY 89
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 101
+ L ++A + A + H+ C +++ S
Sbjct: 90 TSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
Score = 28.7 bits (65), Expect = 3.0
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 551
++Y + L ++A + A + H+ C +++ S
Sbjct: 87 FMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 83.8 bits (208), Expect = 1e-19
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAF 296
L+ DV +V + P H+ VLA S F +F G ++ E+ V A
Sbjct: 22 QGLLCDVVILVEG----REFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEAL 77
Query: 297 LTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 339
L+ + Y + + V L A+ +P ++ C L+
Sbjct: 78 TALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLD 120
Score = 72.2 bits (178), Expect = 2e-15
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENK-EEIEVPDVEPSAFLTLLKYLY 64
+ P H+ VLA S F +F G ++ E+ V A L+ + Y
Sbjct: 35 REFPTHRSVLAACSQYFKKLFTSG---------AVVDQQNVYEIDFVSAEALTALMDFAY 85
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 99
+ + V L A+ +P ++ C L+
Sbjct: 86 TATLTVSTANVGDILSAARLLEIPAVSHVCADLLD 120
Score = 29.1 bits (66), Expect = 2.1
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 549
+ Y + + V L A+ +P ++ C L+
Sbjct: 83 FAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLD 120
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 82.3 bits (204), Expect = 6e-19
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFL 297
+++ DV +V + AH+ VLA S F+ G + +V F
Sbjct: 29 KDILCDVTLIVER----KEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFG 84
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 338
LL++ Y + L + + + A+ + +L +C ++L
Sbjct: 85 PLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
Score = 70.3 bits (173), Expect = 9e-15
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
+ AH+ VLA S F+ G + +V F LL++ Y
Sbjct: 42 KEFRAHRAVLAACSEYFWQALVGQ---------TKNDLVVSLPEEVTARGFGPLLQFAYT 92
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYL 98
+ L + + + A+ + +L +C ++L
Sbjct: 93 AKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 80.7 bits (200), Expect = 2e-18
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFL 297
+++ DV V Q AH+ VLA SS F++ G +V F
Sbjct: 26 KDVLCDVTIFVEG----QRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFE 81
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 339
L+++ Y + L + V + V ++ +C +L+
Sbjct: 82 PLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
Score = 67.6 bits (166), Expect = 8e-14
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q AH+ VLA SS F++ G +V F L+++ Y
Sbjct: 39 QRFRAHRSVLAACSSYFHSRIVGQA---------DGELNITLPEEVTVKGFEPLIQFAYT 89
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 99
+ L + V + V ++ +C +L+
Sbjct: 90 AKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
Score = 27.2 bits (61), Expect = 8.7
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 549
+ Y + L + V + V ++ +C +L+
Sbjct: 86 FAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 80.4 bits (199), Expect = 5e-18
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAE---NKEEIEVPDV 291
D V+ + IP K +LA S + + +IE+ +
Sbjct: 41 FREESRFCDAHLVLDG----EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 96
Query: 292 EPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 339
+L Y++ I+L DT+ + A ++ L C +LE
Sbjct: 97 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
Score = 69.6 bits (171), Expect = 3e-14
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAE-NKEEIEVPDVEPSAFLTLLKYLY 64
+ IP K +LA S + + +IE+ + +L Y++
Sbjct: 57 EEIPVQKNILAAASPYIRTKLNYN-------PPKDDGSTYKIELEGISVMVMREILDYIF 109
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 99
I+L DT+ + A ++ L C +LE
Sbjct: 110 SGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
Score = 28.4 bits (64), Expect = 4.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 549
Y++ I+L DT+ + A ++ L C +LE
Sbjct: 107 YIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 80.0 bits (198), Expect = 5e-18
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFL 297
+++ DV +V Q AH+ VLA SS F++ G +V F
Sbjct: 33 KDVLCDVTVLVEG----QRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFE 88
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 342
L+++ Y + L D V + V ++ +C +L+
Sbjct: 89 PLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133
Score = 67.7 bits (166), Expect = 1e-13
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q AH+ VLA SS F++ G T +V F L+++ Y
Sbjct: 46 QRFRAHRSVLAACSSYFHSRIVGQT---------DAELTVTLPEEVTVKGFEPLIQFAYT 96
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 102
+ L D V + V ++ +C +L+
Sbjct: 97 AKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133
Score = 27.6 bits (62), Expect = 6.7
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 552
+ Y + L D V + V ++ +C +L+
Sbjct: 93 FAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 78.8 bits (195), Expect = 9e-18
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFL 297
D VG AH VLA S F +++ G + + +P F
Sbjct: 21 KGQYCDATLDVGG----LVFKAHWSVLACCSHFFQSLYGDG---SGGSVVLPAGFAEIFG 73
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 341
LL + Y + L + L A++ VP C ++ +
Sbjct: 74 LLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117
Score = 70.7 bits (174), Expect = 6e-15
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
AH VLA S F +++ G + + +P F LL + Y
Sbjct: 34 LVFKAHWSVLACCSHFFQSLYGDG------------SGGSVVLPAGFAEIFGLLLDFFYT 81
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 101
+ L + L A++ VP C ++ +
Sbjct: 82 GHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117
Score = 28.3 bits (64), Expect = 3.3
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 551
+ Y + L + L A++ VP C ++ +
Sbjct: 78 FFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 76.9 bits (190), Expect = 3e-17
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFL 297
+ D V+G AH+ VLA+ S F A++ ++ V+ F
Sbjct: 19 AGFLCDCTIVIGE----FQFKAHRNVLASFSEYFGAIYRSTSEN-NVFLDQSQVKADGFQ 73
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 339
LL+++Y + L++ V A V + C +E
Sbjct: 74 KLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
Score = 68.8 bits (169), Expect = 2e-14
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
AH+ VLA+ S F A++ + EN ++ V+ F LL+++Y
Sbjct: 32 FQFKAHRNVLASFSEYFGAIYRSTS----------ENNVFLDQSQVKADGFQKLLEFIYT 81
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 99
+ L++ V A V + C +E
Sbjct: 82 GTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
Score = 27.2 bits (61), Expect = 8.6
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 549
++Y + L++ V A V + C +E
Sbjct: 78 FIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 76.5 bits (189), Expect = 6e-17
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 243 DVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKY 302
DV +V S Q AH+ VLA S +F +F+ N + + + P F +L+Y
Sbjct: 30 DVVIMVDS----QEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLSPKTFQQILEY 81
Query: 303 LYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 340
Y +Q +A+ + LY A+ + +L C+ LET
Sbjct: 82 AYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
Score = 69.2 bits (170), Expect = 2e-14
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q AH+ VLA S +F +F+ N + + + P F +L+Y Y
Sbjct: 38 QEFHAHRTVLACTSKMFEILFHR-------------NSQHYTLDFLSPKTFQQILEYAYT 84
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 100
+Q +A+ + LY A+ + +L C+ LET
Sbjct: 85 ATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 550
Y Y +Q +A+ + LY A+ + +L C+ LET
Sbjct: 81 YAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 73.8 bits (182), Expect = 7e-16
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 243 DVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKY 302
DV VV AH+ VLA SS F +F + E V+P +F +L +
Sbjct: 35 DVSVVVKG----HAFKAHRAVLAASSSYFRDLFNNSRSAVVELPA--AVQPQSFQQILSF 88
Query: 303 LYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLT 343
Y + + +Y A + + + +
Sbjct: 89 CYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
Score = 65.4 bits (160), Expect = 5e-13
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVP-DVEPSAFLTLLKYLY 64
AH+ VLA SS F +F +E+P V+P +F +L + Y
Sbjct: 43 HAFKAHRAVLAASSSYFRDLFNNS------------RSAVVELPAAVQPQSFQQILSFCY 90
Query: 65 CDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLT 103
+ + +Y A + + + +
Sbjct: 91 TGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
Score = 28.8 bits (65), Expect = 2.6
Identities = 3/42 (7%), Positives = 11/42 (26%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLT 553
+ Y + + +Y A + + + +
Sbjct: 88 FCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 70.7 bits (174), Expect = 5e-15
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 238 NELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFL 297
L+ D FVV AHK VLA S F +F + K+ + + +
Sbjct: 24 LGLLCDCTFVVDG----VHFKAHKAVLAACSEYFKMLF----VDQKDVVHLDISNAAGLG 75
Query: 298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 341
+L+++Y + L + V L VA + + AC +
Sbjct: 76 QVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLA 119
Score = 63.4 bits (155), Expect = 2e-12
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
AHK VLA S F +F + K+ + + + +L+++Y
Sbjct: 37 VHFKAHKAVLAACSEYFKMLF-------------VDQKDVVHLDISNAAGLGQVLEFMYT 83
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 101
+ L + V L VA + + AC +
Sbjct: 84 AKLSLSPENVDDVLAVATFLQMQDIITACHALKSLA 119
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 67.7 bits (166), Expect = 7e-14
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 211 TPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSV 270
+P P+ S V+ A + D VGS Q PAH VLA S
Sbjct: 3 MSLPPIRLPSPYGSDRLVQL---AARLRPALCDTLITVGS----QEFPAHSLVLAGVSQQ 55
Query: 271 FYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHL 330
+ + PS F LL ++Y + ++L+ + A+ V L
Sbjct: 56 LGRRG--------QWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSL 107
Query: 331 ARACVTYLE 339
AC
Sbjct: 108 EEACWRARG 116
Score = 59.2 bits (144), Expect = 6e-11
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 17/94 (18%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q PAH VLA S + + PS F LL ++Y
Sbjct: 40 QEFPAHSLVLAGVSQQLGRRG-----------------QWALGEGISPSTFAQLLNFVYG 82
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 99
+ ++L+ + A+ V L AC
Sbjct: 83 ESVELQPGELRPLQEAARALGVQSLEEACWRARG 116
Score = 27.6 bits (62), Expect = 6.3
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 512 YLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLE 549
++Y + ++L+ + A+ V L AC
Sbjct: 79 FVYGESVELQPGELRPLQEAARALGVQSLEEACWRARG 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 5e-12
Identities = 90/627 (14%), Positives = 169/627 (26%), Gaps = 174/627 (27%)
Query: 48 VPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNA 107
+ E AF+ C D+Q ++L+ + + L +L +K
Sbjct: 22 LSVFED-AFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQE 76
Query: 108 CLLLSQSRLFEEPDLMQR----CWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPL 163
+ F E ++++ I ++ P M T+ + Q + L N N
Sbjct: 77 ----EMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVF 126
Query: 164 VPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIV---------QTTSASPVNFTPIP 214
S+LQ + + +PA N++ + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPA---------KNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 215 NTGDPN--WQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFY 272
D W ++ N+ E++ + + + + +++ +
Sbjct: 178 CKMDFKIFWL----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---------- 223
Query: 273 AMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYC----DDIQ----LEA-D---TVLAT-- 318
K I E L Y C ++Q A + +L T
Sbjct: 224 ----------KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 319 -LYVAKKYIVPHLARACVTYLETSLTAKNA------CLLLSQSRLFEE-----PDLMQRC 366
V + + +LT L L E P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 367 WEVIDAQAEMALKSEGFVDIDMSTLESVFAR--ETLNCKEM-HLFEA------------- 410
E I + + + ++ L ++ L E +F+
Sbjct: 334 AESIR---DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 411 --ALNWANA--ECVRRDLEPTAHNKRLVLGNAL-YLVRIPTMSLGEFANKAAQLGIL--- 462
+L W + V + H LV + IP++ L E K L
Sbjct: 391 LLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYL-ELKVKLENEYALHRS 448
Query: 463 ---------------TLQETID--IFLHFTAHNKPHLSYPVKARAGLKPQ--RSVFF--- 500
+ +D + H H HL + R VF
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GH---HLK---NIEHPERMTLFRMVFLDFR 501
Query: 501 -----VRLTSLFPFPRYLYCDDIQ-LEADTVLATLYVAKKYIVPH------LARACVTYL 548
+R S + +Q L+ Y K YI + L A + +L
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLK-------FY--KPYICDNDPKYERLVNAILDFL 552
Query: 549 ----ETSLTAKNACLLLSQSRLFEEPD 571
E + +K LL + L E +
Sbjct: 553 PKIEENLICSKYTDLL--RIALMAEDE 577
Score = 30.6 bits (68), Expect = 2.1
Identities = 59/395 (14%), Positives = 112/395 (28%), Gaps = 117/395 (29%)
Query: 43 KEEIEVPDVEPSAFLTLLKYLYC----DDIQ----LEA-D---TVLAT---LYVAKKYIV 87
K I E L Y C ++Q A + +L T V
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 88 PHLARACVTYLETSLTAKNACLLLSQ---SRLFEEPDLMQRC----WEVIDAQRLTPDMN 140
+ + +LT LL + R + P + +I A+ + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLA 342
Query: 141 TQNTVSQTNNW-INETLKNG--NL-PL---------------VPVPSSQLQTI---SQRE 178
T + N + +++ L P +P+ L I +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 179 SNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNN 238
M + + L ++T + IP+ + K + A+ +
Sbjct: 403 DVMVVVN--KLHKYSLVEKQPKESTIS-------IPSI----YLELKVKLENE-YAL-HR 447
Query: 239 ELMADVKFVVGSSGHTQTIPAH-KYVLATGSSVFYAMFYGG----LAENKEEIEVPDVEP 293
++ P +Y FY + G E+ E +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQY--------FY--SHIGHHLKNIEHPERMT------ 491
Query: 294 SAFLTLLKYLYCDD--IQ--LEADT--------VLATL-----YVAKKYIVPH------L 330
L + ++ D ++ + D+ +L TL Y K YI + L
Sbjct: 492 -----LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERL 544
Query: 331 ARACVTYL----ETSLTAKNACLLLSQSRLFEEPD 361
A + +L E + +K LL + L E +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLL--RIALMAEDE 577
Score = 29.4 bits (65), Expect = 5.5
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 52/139 (37%)
Query: 23 YAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDD--IQ--LEADT---- 74
Y + G ++L E+ E + L + ++ D ++ + D+
Sbjct: 472 YFYSHIG-HHLKN----IEHPERMT-----------LFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 75 ----VLATL-----YVAKKYIVPH------LARACVTYL----ETSLTAKNACLLLSQSR 115
+L TL Y K YI + L A + +L E + +K LL +
Sbjct: 516 ASGSILNTLQQLKFY--KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL--RIA 571
Query: 116 LFEEPDLMQRCWEVIDAQR 134
L E + + +A +
Sbjct: 572 LMAEDEAI-----FEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 94/580 (16%), Positives = 169/580 (29%), Gaps = 204/580 (35%)
Query: 2 IRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSA------ 55
+ H +P + +A S F L E E D EP+
Sbjct: 16 LEHVLLVPTASFFIA---SQLQEQFNKI---------LPEPTEGFAADD-EPTTPAELVG 62
Query: 56 -FL----------------TLLK---------YLYCDDIQLEADTVLATLYVAKKYIVPH 89
FL +L YL +DI + A L +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH----ALAAKLLQENDTTLVK 118
Query: 90 LARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQ-RLTPDMNTQNTVSQT 148
Y+ + AK S S LF V + +L Q T
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFR---------AVGEGNAQLVAIFGGQGN---T 166
Query: 149 NNWINETLKNGNL---------PLVPVPSSQLQTISQRESNMQ------------ITQPA 187
+++ E L+ +L L+ + L + + + + + P+
Sbjct: 167 DDYFEE-LR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 188 SVPNSP-LASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKF 246
+ P+ L S P++ I Q + V + EL + +K
Sbjct: 224 NTPDKDYLLS---------IPISCPLIGVI-----QLAHYVVTAKLLGFTPGELRSYLK- 268
Query: 247 VVGSSGHTQTIPAHKYVLATGSSV--FYA--------MFYGGL-------------AENK 283
G++GH+Q + +A S F+ +F+ G+ + +
Sbjct: 269 --GATGHSQGLVTAV-AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 284 EEIEVPDVEPSAFL--------TLLKYLYCDDIQLEADTVLA-TLY-VAKKYIV---PH- 329
+ +E + PS L + Y+ + L A + +L AK +V P
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 330 LARACVTYLETSLTAKNACLLLSQSRL-FEE--------------P---DLMQRCWEVID 371
L L +L A L QSR+ F E P L+ ++I+
Sbjct: 386 LYG-----LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 372 ---AQAEMALKSEGFVDI-----------DMSTLESVFARETLNCKEMHLFEAALNWANA 417
+ ++ ++ DI D+ L + ++C + + W
Sbjct: 441 KDLVKNNVSFNAK---DIQIPVYDTFDGSDLRVLSGSISERIVDC----IIRLPVKWETT 493
Query: 418 ECVRR----DLEP---------TAHNK-----RLVLGNAL 439
+ D P T NK R+++ L
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 58.5 bits (141), Expect = 8e-09
Identities = 83/600 (13%), Positives = 166/600 (27%), Gaps = 181/600 (30%)
Query: 155 TLKNGNL-PLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTS-----ASPV 208
TL +G+L ++ VP++ SQ + P P A+ + + T+ +
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE--PTEGFAADD--EPTTPAELVGKFL 65
Query: 209 NFTPIPNTGDPNWQASKPTVRERNAAMFNNELMA--DVKFVVGS--SGHTQTIPAHKYVL 264
+ + + +P+ V F N + D+ + + T+ K ++
Sbjct: 66 GY--VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 265 --------------------------ATGSSVFYAMFYG-GLAEN--KE-----EIEVPD 290
G++ A+F G G ++ +E +
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 291 VEP---SAFLTLL---------KYLYCDDIQLEA----------DTVLATLYVAKKYI-V 327
V + TL + ++ + + L ++ ++ I V
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 328 PHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQA-EMALKSEGFVDI 386
LA VT T L ++ A A E F
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLK--------GATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 387 DMSTLESVFARETLNCKEMHLFEAALNWANAECV----RRDLEPTAHNKRLVLGNALYLV 442
+ +F + C L P+ L
Sbjct: 296 VRKAITVLF------------------FIGVRCYEAYPNTSLPPSILEDSLENNEG---- 333
Query: 443 RIPT-MSLGEFANKAAQLGI--LT---LQETIDIFLHFTAHNKPHLSYPVKARAGLK--P 494
+P+ M L I LT +Q+ ++ N HL + L
Sbjct: 334 -VPSPM-----------LSISNLTQEQVQDYVNKT------NS-HLPAGKQVEISLVNGA 374
Query: 495 QRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACV---TYLETS 551
+ V ++ P+ LY ++ L + L ++ +P R +L +
Sbjct: 375 KN---LV-VSG---PPQSLYGLNLTLRKAKAPSGLDQSR---IPFSERKLKFSNRFLPVA 424
Query: 552 LTAKNA---CLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVD-IDMSTLESVFAR 607
+ LL + DL++ V ++ + D D+ L +
Sbjct: 425 -----SPFHSHLLVPASDLINKDLVKN--NVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 608 ETLNCKEMHLFEAALNWANAECVRR----DLEP---------TAHNK-----RLVLGNAL 649
++C + + W + D P T NK R+++ L
Sbjct: 478 RIVDC----IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 47.4 bits (112), Expect = 2e-05
Identities = 62/318 (19%), Positives = 96/318 (30%), Gaps = 101/318 (31%)
Query: 428 AHNKR-LVL--GNALYLVRIPTMSLGEFANKAAQLG---ILTLQETIDI----------- 470
A++ R L L G+ +++ +PT S F A+QL L E +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASF--FI--ASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 471 -----FLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRL--TSLFPFPR-YLYCDDIQLEA 522
FL + + ++P + F ++ L F YL +DI
Sbjct: 59 ELVGKFLGYVSSL-------------VEPSKVGQFDQVLNLCLTEFENCYLEGNDIH--- 102
Query: 523 DTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFE-----EPDLM---- 573
+ A L + Y+ + AK S S LF L+
Sbjct: 103 -ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 574 -Q----RCWEVIDAQAEMAL---KSEGFVD--IDMS--TLESVFARETLNCKEMHLFEAA 621
Q +E E+ V I S TL R TL+ ++ +F
Sbjct: 162 GQGNTDDYFE------ELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAEK--VFTQG 212
Query: 622 LN---WANAECVRRDLEPTAHNKRLVLGNALYLVRIPT-------MSLGEFANKAAQLGI 671
LN W P + YL+ IP + L + A LG
Sbjct: 213 LNILEWLE----NPSNTP----------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLG- 257
Query: 672 LTLQETIDIFLHFTAHNK 689
T E T H++
Sbjct: 258 FTPGELRSYLKGATGHSQ 275
Score = 42.3 bits (99), Expect = 6e-04
Identities = 56/326 (17%), Positives = 102/326 (31%), Gaps = 114/326 (34%)
Query: 352 SQSR-----LFEEPDLMQRCWEVIDAQAEMALKSEGF--VDI---DMSTLESVFA----- 396
SQ + L++ Q W D + GF +DI + L F
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY---GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 397 --RETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGN-------------ALYL 441
RE N M +FE ++ + + E H+ + AL L
Sbjct: 1683 RIRE--NYSAM-IFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 442 VR------------IPTM------SLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLS 483
+ IP SLGE+A A+ +++++ +++
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV------------- 1785
Query: 484 YPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARA 543
V R G+ Q +V PR D++ ++A + + ++
Sbjct: 1786 --VFYR-GMTMQVAV-----------PR----DELGRSNYGMIA---INPGRVAASFSQE 1824
Query: 544 CVTYLETSLTAKNACLLLSQSRLFEEP-----DLMQRCWEVI--DAQA-EMA---LKSEG 592
+ Y+ + + L+ E + Q V D +A + L
Sbjct: 1825 ALQYVVERVGKRTGWLV--------EIVNYNVENQQY---VAAGDLRALDTVTNVLNFIK 1873
Query: 593 FVDIDMSTLESVFARETLNCKEMHLF 618
ID+ L+ + E + E HLF
Sbjct: 1874 LQKIDIIELQKSLSLEEV---EGHLF 1896
Score = 39.6 bits (92), Expect = 0.004
Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 71/192 (36%)
Query: 562 SQSR-----LFEEPDLMQRCWEVIDAQAEMALKSEGF--VDI---DMSTLESVFA----- 606
SQ + L++ Q W D + GF +DI + L F
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY---GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 607 --RETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGN-------------ALYL 651
RE N M +FE ++ + + E H+ + AL L
Sbjct: 1683 RIRE--NYSAM-IFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 652 VR------------IPTM------SLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLS 693
+ IP SLGE+A A+ +++++ +++
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV------------- 1785
Query: 694 YPVKARAGLKPQ 705
V R G+ Q
Sbjct: 1786 --VFYR-GMTMQ 1794
Score = 28.9 bits (64), Expect = 7.5
Identities = 22/118 (18%), Positives = 31/118 (26%), Gaps = 50/118 (42%)
Query: 112 SQSR-----LFEEPDLMQRCWEVIDAQRLT------PDMNTQNTVSQT------------ 148
SQ + L++ Q W D D+ N V+ T
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 149 NNWIN---ETLKNGNLPLVPV---------------PSSQL-QTISQRESNMQITQPA 187
N+ ET+ +G L + L T Q TQPA
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--------QFTQPA 1735
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 56.1 bits (136), Expect = 7e-10
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 243 DVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKY 302
DV +V + AHK +L+ S+ F+ +F + + +E+ + F +L Y
Sbjct: 33 DVTVIVED----RKFRAHKNILSASSTYFHQLF----SVAGQVVELSFIRAEIFAEILNY 84
Query: 303 LYCDDI-QLEADTVLATLYVA 322
+Y I ++ +D + +
Sbjct: 85 IYSSKIVRVRSDLLDELIKSG 105
Score = 49.2 bits (118), Expect = 2e-07
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
+ AHK +L+ S+ F+ +F + + +E+ + F +L Y+Y
Sbjct: 41 RKFRAHKNILSASSTYFHQLF-------------SVAGQVVELSFIRAEIFAEILNYIYS 87
Query: 66 DDI-QLEADTVLATLYVA 82
I ++ +D + +
Sbjct: 88 SKIVRVRSDLLDELIKSG 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.016
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 172 QTISQRESNMQITQPASVPNSPLASPNIVQTT 203
Q + + ++++++ S P LA ++ T
Sbjct: 20 QALKKLQASLKLYADDSAP--ALA----IKAT 45
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 30.3 bits (69), Expect = 0.62
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 336 TYLETSLTAKNACL-LLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESV 394
+ + + N CL ++ + +P+L +E F+ + L +
Sbjct: 2 SSGSSGVQVGN-CLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDI 60
Query: 395 FARETLNCKEMHLFEAALNWANAECVRRDLE 425
+ + EA W + + E
Sbjct: 61 ISDGVPC--SQNPTEAIEAW-----INFNKE 84
Score = 30.3 bits (69), Expect = 0.62
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 546 TYLETSLTAKNACL-LLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESV 604
+ + + N CL ++ + +P+L +E F+ + L +
Sbjct: 2 SSGSSGVQVGN-CLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDI 60
Query: 605 FARETLNCKEMHLFEAALNWANAECVRRDLE 635
+ + EA W + + E
Sbjct: 61 ISDGVPC--SQNPTEAIEAW-----INFNKE 84
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 31.0 bits (71), Expect = 1.5
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 247 VVGSSGHTQTIPAHKYVLATGSSVF 271
V + G + + + ++ATG+S
Sbjct: 127 VRLNEGGERVVMFDRCLVATGASPA 151
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus
microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E*
5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Length = 325
Score = 30.7 bits (70), Expect = 1.8
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 241 MADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGG 278
+ F + G + + V A F G
Sbjct: 257 FKPLVFSIN--GASFQVSPDSLVFEEFQGQCIAGFGYG 292
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR
{Saccharomyces cerevisiae} SCOP: d.42.1.1
Length = 99
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 248 VGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 305
V I A S AM G E+K IE+ + ++YL
Sbjct: 9 VSKDDKEYEI---SRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNY 63
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.4 bits (68), Expect = 2.4
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 162 PLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNW 221
P P S + S + T P+ P SP SP + SP +++P + P
Sbjct: 1572 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTS 1630
Query: 222 QASKPT 227
+ PT
Sbjct: 1631 PSYSPT 1636
Score = 29.7 bits (66), Expect = 4.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 162 PLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNW 221
P P S + S + T P+ P SP SP + SP +++P + P
Sbjct: 1600 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTS 1658
Query: 222 QASKPT 227
A PT
Sbjct: 1659 PAYSPT 1664
Score = 29.3 bits (65), Expect = 6.1
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 159 GNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGD 218
G P P S T PA P SP SP + SP +++P +
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYS 1585
Query: 219 PNWQASKPT 227
P + PT
Sbjct: 1586 PTSPSYSPT 1594
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 2.9
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 19/120 (15%)
Query: 151 WINET-LKNGNLPLVP-VPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPV 208
W T L + N + + ++T SQ+E + L +P +V+ SPV
Sbjct: 672 WTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLG--------LLTPEVVELCQKSPV 723
Query: 209 --NFT----PIPNTGDPNWQASKP---TVRERNAAMFNNELMADVKFVVGSSGHTQTIPA 259
+ +P + + K T R A L V + +
Sbjct: 724 MADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEI 783
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.0 bits (67), Expect = 3.7
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 162 PLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNW 221
P P S + S + T P+ P SP SP + SP +++P + P
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTS 1729
Query: 222 QASKPT 227
+ PT
Sbjct: 1730 PSYSPT 1735
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 28.9 bits (65), Expect = 5.6
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 145 VSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVP 190
NWI + + + ++ +P++ + +++ QP+ P
Sbjct: 237 TWSYLNWIASKIGSTAVHMIQLPTASPASTPGAQASSGSVQPSVRP 282
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 28.9 bits (64), Expect = 7.4
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 484 YPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVA 532
Y K + +F+ F R+ Y I L VA
Sbjct: 311 YADKFAVKTSDETQKYFLNTGDSSNFARWRYGVSITLSGKRATGQAKVA 359
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 28.5 bits (63), Expect = 9.3
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 484 YPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVA 532
Y + K +F++ F R+ Y D+ L V + V+
Sbjct: 311 YADRFPGRTKGVGQLFYLNTGDASNFARWRYRVDVTLSGKKVTGHVLVS 359
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.393
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,404,301
Number of extensions: 614129
Number of successful extensions: 1596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1532
Number of HSP's successfully gapped: 91
Length of query: 705
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 605
Effective length of database: 3,909,693
Effective search space: 2365364265
Effective search space used: 2365364265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)