RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11551
(705 letters)
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 76.3 bits (187), Expect = 3e-17
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAEN-KEEIEVPDVEP 293
+ + +++ DV VV + AHK VL S +FY++F L N P++ P
Sbjct: 19 LRSRDILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINP 74
Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 341
F LL ++Y + L ++A + A + H+ C +++ S
Sbjct: 75 EGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 122
Score = 62.1 bits (150), Expect = 3e-12
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
+ AHK VL S +FY++F P++ P F LL ++Y
Sbjct: 35 EQFRAHKTVLMACSGLFYSIFTDQLKR--------NLSVINLDPEINPEGFNILLDFMYT 86
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 101
+ L ++A + A + H+ C +++ S
Sbjct: 87 SRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 122
Score = 36.3 bits (83), Expect = 0.002
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 511 RYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 551
++Y + L ++A + A + H+ C +++ S
Sbjct: 82 DFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 122
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 70.8 bits (173), Expect = 2e-15
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPS 294
M + DV +V S Q AH+ VLA S +F +F+ N + + + P
Sbjct: 22 MRLAGTLCDVVIMVDS----QEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLSPK 73
Query: 295 AFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 340
F +L+Y Y +Q +A+ + LY A+ + +L C+ LET
Sbjct: 74 TFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
Score = 58.9 bits (142), Expect = 4e-11
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 6 QTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYC 65
Q AH+ VLA S +F +F+ + + + + P F +L+Y Y
Sbjct: 38 QEFHAHRTVLACTSKMFEILFHRNSQH-------------YTLDFLSPKTFQQILEYAYT 84
Query: 66 DDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 100
+Q +A+ + LY A+ + +L C+ LET
Sbjct: 85 ATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
Score = 39.2 bits (91), Expect = 2e-04
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 509 FPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLET 550
Y Y +Q +A+ + LY A+ + +L C+ LET
Sbjct: 78 ILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 29.2 bits (65), Expect = 1.5
Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 11/95 (11%)
Query: 121 DLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQ--LQTISQRE 178
D + R R+T Q+ W+ + ++ + ++ + T+ +++
Sbjct: 236 DFVDRLLVKERKSRMTASEALQHP------WLKQKIERVSTKVIRTLKHRRYYHTLIKKD 289
Query: 179 SNMQITQPASVPNSPLASPNIVQTTSASPVNFTPI 213
NM ++ + S + S + V I
Sbjct: 290 LNMVVSAARISCGGAIRSQ---KGVSVAKVKVASI 321
>g1fiw.1 b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries) [TaxId:
9940]}
Length = 274
Score = 28.6 bits (62), Expect = 2.7
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 127 WEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPS 168
W V A+ P + T NWI + + + ++ +P+
Sbjct: 235 WGVGCARAKRPGVYTS--TWSYLNWIASKIGSTAVHMIQLPT 274
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.6 bits (61), Expect = 3.8
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 358 EEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANA 417
L R EV + M ++ G ++++ + + T ++L
Sbjct: 53 LGNRLFGRAQEVA--KKFMEIRGLGIINVERFYGLQITKQRTEIQLMVNLLS----LEKQ 106
Query: 418 ECVRRDLEPTAHNKRLVLGNALYLVRIP 445
V + T K+ +LG L IP
Sbjct: 107 TTVTFERLGTELKKQRLLGVDLSFYEIP 134
Score = 27.6 bits (61), Expect = 3.8
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 568 EEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANA 627
L R EV + M ++ G ++++ + + T ++L
Sbjct: 53 LGNRLFGRAQEVA--KKFMEIRGLGIINVERFYGLQITKQRTEIQLMVNLLS----LEKQ 106
Query: 628 ECVRRDLEPTAHNKRLVLGNALYLVRIP 655
V + T K+ +LG L IP
Sbjct: 107 TTVTFERLGTELKKQRLLGVDLSFYEIP 134
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 27.7 bits (61), Expect = 4.5
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 121 DLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESN 180
D ++ + +RLT + + W+ N +PSS+ I Q+
Sbjct: 261 DFIKNLLQKEPRKRLTVHDALE------HPWLKGDHSN---LTSRIPSSRYNKIRQKIKE 311
Query: 181 MQITQPASVPNSPLASPNIVQTTSASPVNF 210
PA P N P +
Sbjct: 312 KYADWPAPQPAIG-RIANFSSLRKHRPQEY 340
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.393
Gapped
Lambda K H
0.267 0.0389 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,483,802
Number of extensions: 111259
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 11
Length of query: 705
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 613
Effective length of database: 1,144,436
Effective search space: 701539268
Effective search space used: 701539268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.3 bits)