BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11552
(714 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 33/246 (13%)
Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
Y G + F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 481 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 540
Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR +KL+
Sbjct: 541 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 600
Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++ + D +
Sbjct: 601 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 660
Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
K +V+SYV L +DNQR L+ MS
Sbjct: 661 ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 687
Query: 708 KLEPRR 713
+LEPRR
Sbjct: 688 RLEPRR 693
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 75/97 (77%)
Query: 290 PLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWY 349
P RT +DLE IY+E S +V+RELAGV++FE+H + G +LF+QG+EG SWY
Sbjct: 19 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWY 78
Query: 350 IIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
II++GSV+VVIYGKG V +L+ G+DFGKLALVN+APR
Sbjct: 79 IILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPR 115
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 268 bits (685), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 33/246 (13%)
Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
Y G + F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 786 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 845
Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR +KL+
Sbjct: 846 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 905
Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++ + D +
Sbjct: 906 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 965
Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
K +V+SYV L +DNQR L+ MS
Sbjct: 966 ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 992
Query: 708 KLEPRR 713
+LEPRR
Sbjct: 993 RLEPRR 998
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 129/241 (53%), Gaps = 41/241 (17%)
Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205
R+C G+ELVDW++ S SR GMWQ LLE+GV+ HV+ E+ F+DK + Y F
Sbjct: 221 RQCCVGTELVDWMIQQT-SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLD 279
Query: 206 DKEGSSSQATAQDIXXXXXXXXXXXXXXXRRAPDAILRYILRKQLKKLQNRYLPREYMLH 265
D+ + T ++ + PDA +R ILRK
Sbjct: 280 DEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRK----------------- 322
Query: 266 LXXXXXXXXXXXXXXXXXXXQIGKPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGV 325
P RT +DLE IY+E S +V+RELAGV
Sbjct: 323 -----------------------PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV 359
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 385
++FE+H + G +LF+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+AP
Sbjct: 360 LIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 419
Query: 386 R 386
R
Sbjct: 420 R 420
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 34 QSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLA 93
++ PS + RAG +LR +L+ +RDRK R+C G+ELVDW++ S
Sbjct: 184 ENVPSEKILRAGKILRIAILSRAPHMIRDRKYH--LKTYRQCCVGTELVDWMIQQT-SCV 240
Query: 94 VSRQITTGMWQALLEEGVIYH 114
SR GMWQ LLE+GV+ H
Sbjct: 241 HSRTQAVGMWQVLLEDGVLNH 261
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 289 KPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
+PL+R+SED++ I+ ++ R++ +E + KG LF QGD G +W
Sbjct: 28 RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYE-NLEKGITLFRQGDIGTNW 86
Query: 349 YIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPR 386
Y ++ GS+DV + + +L G FG+ ++++N PR
Sbjct: 87 YAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPR 129
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPSY 442
+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N P +
Sbjct: 76 LFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRH 130
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 268 bits (685), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 33/246 (13%)
Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
Y G + F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 786 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 845
Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR +KL+
Sbjct: 846 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 905
Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++ + D +
Sbjct: 906 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 965
Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
K +V+SYV L +DNQR L+ MS
Sbjct: 966 ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 992
Query: 708 KLEPRR 713
+LEPRR
Sbjct: 993 RLEPRR 998
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 129/241 (53%), Gaps = 41/241 (17%)
Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205
R+C G+ELVDW++ S SR GMWQ LLE+GV+ HV+ E+ F+DK + Y F
Sbjct: 221 RQCCVGTELVDWMIQQT-SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLD 279
Query: 206 DKEGSSSQATAQDIXXXXXXXXXXXXXXXRRAPDAILRYILRKQLKKLQNRYLPREYMLH 265
D+ + T ++ + PDA +R ILRK
Sbjct: 280 DEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRK----------------- 322
Query: 266 LXXXXXXXXXXXXXXXXXXXQIGKPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGV 325
P RT +DLE IY+E S +V+RELAGV
Sbjct: 323 -----------------------PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV 359
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 385
++FE+H + G +LF+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+AP
Sbjct: 360 LIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 419
Query: 386 R 386
R
Sbjct: 420 R 420
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 34 QSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLA 93
++ PS + RAG +LR +L+ +RDRK R+C G+ELVDW++ S
Sbjct: 184 ENVPSEKILRAGKILRIAILSRAPHMIRDRKYH--LKTYRQCCVGTELVDWMIQQT-SCV 240
Query: 94 VSRQITTGMWQALLEEGVIYH 114
SR GMWQ LLE+GV+ H
Sbjct: 241 HSRTQAVGMWQVLLEDGVLNH 261
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 289 KPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
+PL+R+SED++ I+ ++ R++ +E + KG LF QGD G +W
Sbjct: 28 RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYE-NLEKGITLFRQGDIGTNW 86
Query: 349 YIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPR 386
Y ++ GS+DV + + +L G FG+ ++++N PR
Sbjct: 87 YAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPR 129
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPSY 442
+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N P +
Sbjct: 76 LFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRH 130
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 129/241 (53%), Gaps = 41/241 (17%)
Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205
R+C G+ELVDW++ S SR GMWQ LLE+GV+ HV+ E+ F+DK + Y F
Sbjct: 221 RQCCVGTELVDWMIQ-QTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLD 279
Query: 206 DKEGSSSQATAQDIXXXXXXXXXXXXXXXRRAPDAILRYILRKQLKKLQNRYLPREYMLH 265
D+ + T ++ + PDA +R ILRK
Sbjct: 280 DEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRK----------------- 322
Query: 266 LXXXXXXXXXXXXXXXXXXXQIGKPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGV 325
P RT +DLE IY+E S +V+RELAGV
Sbjct: 323 -----------------------PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV 359
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 385
++FE+H + G +LF+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+AP
Sbjct: 360 LIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 419
Query: 386 R 386
R
Sbjct: 420 R 420
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 34 QSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLA 93
++ PS + RAG +LR +L+ +RDRK R+C G+ELVDW++ S
Sbjct: 184 ENVPSEKILRAGKILRIAILSRAPHMIRDRKYH--LKTYRQCCVGTELVDWMIQ-QTSCV 240
Query: 94 VSRQITTGMWQALLEEGVIYH 114
SR GMWQ LLE+GV+ H
Sbjct: 241 HSRTQAVGMWQVLLEDGVLNH 261
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 289 KPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
+PL+R+SED++ I+ ++ R++ +E + KG LF QGD G +W
Sbjct: 28 RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYE-NLEKGITLFRQGDIGTNW 86
Query: 349 YIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPR 386
Y ++ GS+DV + + +L G FG+ ++++N PR
Sbjct: 87 YAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPR 129
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPSY 442
+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N P +
Sbjct: 76 LFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRH 130
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 488 RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSR 547
+ FN + ++ +EI+ ++ R + K + +A C+ N NA+ + ++ A+ R
Sbjct: 51 KHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFR 110
Query: 548 LSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDG 607
L TW K+ ++K +L+ L+ + R+++ P +P++ + L DL F +G
Sbjct: 111 LKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEG 170
Query: 608 NKTVV-DGLVNFEKMHMFAQTLRTLRYCR--TRHLDHDKTVVDGLVN 651
DGLVNF KM M + +R +R + T +D V+ L++
Sbjct: 171 TPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLD 217
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 479 ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLM 538
+ N+ F RRFN++ +WV+ EIL +L R +IL +K+A E N+++L +V+
Sbjct: 69 LAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVS 128
Query: 539 GLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPLL 597
L + + RL+ TW L K K T+ +L+ L+ N++ R+ + L+ P IP++ +
Sbjct: 129 ALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIY 188
Query: 598 LKDLAF 603
L DL +
Sbjct: 189 LLDLIY 194
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
L ++ T +GN V+ L+NF K A+
Sbjct: 736 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 769
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 259 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 318
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 319 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 373
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
L ++ T +GN V+ L+NF K A+
Sbjct: 374 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 407
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
L ++ T +GN V+ L+NF K A+
Sbjct: 368 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 401
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
L ++ T +GN V+ L+NF K A+
Sbjct: 736 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 769
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 818 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 877
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 878 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 932
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
L ++ T +GN V+ L+NF K A+
Sbjct: 933 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 966
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 251 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 310
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 311 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 365
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
L ++ T +GN V+ L+NF K A+
Sbjct: 366 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 399
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
L ++ T +GN V+ L+NF K A+
Sbjct: 368 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 401
>pdb|2D93|A Chain A, Solution Structure Of The Cnmp_binding Domain Of Human Rap
Guanine Nucleotide Exchange Factor 6
Length = 134
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 298 LEQIYEEXXXXXXXXXXSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVD 357
+EQ+ E + SVRREL V++FE + G I+ G E SWY+I+ G+V+
Sbjct: 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVE 70
Query: 358 VVIYGKGCVTSLYAGEDFG 376
+ + G V +L+ G FG
Sbjct: 71 IS-HPDGKVENLFMGNSFG 88
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 431
+++ G E SWY+I+ G+V++ + G V +L+ G FG
Sbjct: 49 AIILEDGQELDSWYVILNGTVEIS-HPDGKVENLFMGNSFG 88
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
MF GE + QG+EG ++Y++ QG VDV + G+ VT++ G FG+LAL+ PR
Sbjct: 153 MFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTPR 211
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 388 IITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
I V QG+EG ++Y++ QG VDV + G+ VT++ G FG+LAL+ P
Sbjct: 159 IAGETVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTP 210
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 335 GEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
GE + +GD+G+++Y+I G+VDV G+G + L + FG++AL+N+ PR
Sbjct: 156 GETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPR 207
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
+ +GD+G+++Y+I G+VDV G+G + L + FG++AL+N+ P
Sbjct: 159 IIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLP 206
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 334 KGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
KG + QGD+G +Y++ +G+VD + V S G FG+LAL+ N+PR
Sbjct: 37 KGATIIKQGDQGDYFYVVEKGTVDFYV-NDNKVNSSGPGSSFGELALMYNSPR 88
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 380 LVNNAPRLIITSM----------VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED 429
L +++ RL+I + + QGD+G +Y++ +G+VD + V S G
Sbjct: 18 LDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-NDNKVNSSGPGSS 76
Query: 430 FGKLALVNNAP 440
FG+LAL+ N+P
Sbjct: 77 FGELALMYNSP 87
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
MFE ++GE + QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+
Sbjct: 60 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 119
Query: 383 NAPR 386
N PR
Sbjct: 120 NTPR 123
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAP 440
V QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P
Sbjct: 72 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTP 122
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
MFE ++GE + QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+
Sbjct: 66 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 125
Query: 383 NAPR 386
N PR
Sbjct: 126 NTPR 129
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAP 440
V QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P
Sbjct: 78 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTP 128
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
MF GE + QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PR
Sbjct: 60 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 118
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
I V QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ P
Sbjct: 65 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 117
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
MF GE + QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PR
Sbjct: 58 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 116
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
I V QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ P
Sbjct: 63 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 115
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 385
MF GE + QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ P
Sbjct: 67 AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 125
Query: 386 R 386
R
Sbjct: 126 R 126
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
I V QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ P
Sbjct: 73 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 125
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNN 383
MFE ++GE + QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N
Sbjct: 57 MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYN 116
Query: 384 APR 386
PR
Sbjct: 117 TPR 119
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAP 440
V QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P
Sbjct: 68 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTP 118
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 335 GEILFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNA 384
GE + QGD S++I+ G V + + KG + G+ FG+LALV N
Sbjct: 187 GEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNK 246
Query: 385 PR 386
PR
Sbjct: 247 PR 248
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAP 440
+ QGD S++I+ G V + + KG + G+ FG+LALV N P
Sbjct: 190 IIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKP 247
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
MF GE + QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PR
Sbjct: 62 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 120
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
I V QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ P
Sbjct: 67 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 119
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
MFE ++GE + QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+
Sbjct: 167 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 226
Query: 383 NAPR 386
N P+
Sbjct: 227 NTPK 230
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPSYQLHMYLE 449
V QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P
Sbjct: 179 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPK-------- 230
Query: 450 QMAVYFTTTAPD-IKGPRRYKFR 471
A T T+P + G R FR
Sbjct: 231 --AATITATSPGALWGLDRVTFR 251
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 335 GEILFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNA 384
GE + QGD S++I+ G V + + KG + + G+ FG+LALV N
Sbjct: 298 GEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNK 357
Query: 385 PR 386
PR
Sbjct: 358 PR 359
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAP 440
+ QGD S++I+ G V + + KG + + G+ FG+LALV N P
Sbjct: 301 IIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKP 358
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
MF GE + QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PR
Sbjct: 61 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 119
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
I V QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ P
Sbjct: 66 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 118
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
MFE ++GE + QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+
Sbjct: 167 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 226
Query: 383 NAPR 386
N P+
Sbjct: 227 NTPK 230
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPSYQLHMYLE 449
V QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P
Sbjct: 179 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPK-------- 230
Query: 450 QMAVYFTTTAPD-IKGPRRYKFR 471
A T T+P + G R FR
Sbjct: 231 --AATITATSPGALWGLDRVTFR 251
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 335 GEILFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNA 384
GE + QGD S++I+ G V + + KG + + G+ FG+LALV N
Sbjct: 298 GEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNK 357
Query: 385 PR 386
PR
Sbjct: 358 PR 359
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAP 440
+ QGD S++I+ G V + + KG + + G+ FG+LALV N P
Sbjct: 301 IIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKP 358
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED---FGKLALVNN 383
MFE + E + QGD+G ++Y+I +G+ D+++ S+ ++ FG+LAL+ N
Sbjct: 61 MFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYN 120
Query: 384 APR---LIITSMVFHQGDEGKSW 403
PR +I TS EG W
Sbjct: 121 TPRAATIIATS-------EGSLW 136
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGC-----------VTSLYAGED 374
V+ E + GE + QG++ S+YII G V ++I K + + G+
Sbjct: 182 VIGEKIYKDGERIIAQGEKADSFYIIESGEVSILIRSKTKSNKNGGNQEVEIAHCHKGQY 241
Query: 375 FGKLALVNNAPR 386
FG+LALV N PR
Sbjct: 242 FGELALVTNKPR 253
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED---FGKLALVNNAP 440
V QGD+G ++Y+I +G+ D+++ S+ ++ FG+LAL+ N P
Sbjct: 72 VIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTP 122
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC-----------VTSLYAGEDFGKLALVNNAP 440
+ QG++ S+YII G V ++I K + + G+ FG+LALV N P
Sbjct: 194 IIAQGEKADSFYIIESGEVSILIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKP 252
>pdb|3T6G|A Chain A, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
pdb|3T6G|C Chain C, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
Length = 331
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 486 FLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVA 544
L RF+ + + +IL T S +R +L K I+LAA + FA +MG ++A
Sbjct: 99 LLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMA 158
Query: 545 -VSRLSLTWDKLPSKSKKTYTELEALIDP---SKNHRAYRQAVSKLQSP-VIPFMPLLLK 599
+SRL TW L + + E + P S N +S P V+P + LL
Sbjct: 159 QISRLEQTWVTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLES 218
Query: 600 DLA 602
D A
Sbjct: 219 DSA 221
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 28 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 81
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 82 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 116
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 76
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 77 FEEGQERSAW 86
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 27 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 80
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 81 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 115
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 75
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 76 FEEGQERSAW 85
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 28 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 81
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 82 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 116
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 76
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 77 FEEGQERSAW 86
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 27 STLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELGLFEEGQ------ 80
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 81 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 115
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELGL------------- 75
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 76 FEEGQERSAW 85
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 28 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 81
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 82 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 116
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 76
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 77 FEEGQERSAW 86
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 20 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 73
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 74 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 108
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 22 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 68
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 69 FEEGQERSAW 78
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 27 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 80
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 81 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 115
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 75
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 76 FEEGQERSAW 85
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 20 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 73
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 74 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 108
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 22 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 68
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 69 FEEGQERSAW 78
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 27 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 80
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 81 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 115
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 75
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 76 FEEGQERSAW 85
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 78 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ------ 131
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 132 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 166
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L
Sbjct: 80 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------------- 126
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 127 FEEGQERSAW 136
>pdb|1YYC|A Chain A, Solution Structure Of A Putative Late Embryogenesis
Abundant (Lea) Protein At2g46140.1
Length = 174
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 103 WQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIA--------RRCASGSEL 154
++ + +GV YH K+S +++IP+ +I Y L S RTIA SG+ +
Sbjct: 54 FKGVTRDGVDYHAKVSVKN-PYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTV 112
Query: 155 VDWLMSLAPSLAVS 168
+D + +A S+AVS
Sbjct: 113 LDVPVKVAYSIAVS 126
>pdb|4F7G|B Chain B, Crystal Structure Of Talin Autoinhibition Complex
Length = 216
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 677 PPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPR 712
P +CE+ + + SCLR +D Q L ++SQ+L PR
Sbjct: 25 PGQLECETAIAALNSCLRDLD-QASLAAVSQQLAPR 59
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVT-SLYAGEDFGKLALVNNAPSYQLHM 446
S + HQG++ ++ Y I++GSV V+I GK + L G+ G+L L
Sbjct: 28 STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELGLFEEGQ------ 81
Query: 447 YLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLR 488
E+ A TA ++ KFR Q I N D+ +R
Sbjct: 82 --ERSAWVRAKTACEVAEISYKKFR-----QLIQVNPDILMR 116
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 338 LFHQGDEGKSWYIIIQGSVDVVIY---GKGCVT-SLYAGEDFGKLALVNNAPRLIITSMV 393
L HQG++ ++ Y I++GSV V+I GK + L G+ G+L L
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELGL------------- 76
Query: 394 FHQGDEGKSW 403
F +G E +W
Sbjct: 77 FEEGQERSAW 86
>pdb|2KBB|A Chain A, Nmr Structure Of The Talin Rod Domain, 1655-1822
pdb|2KGX|A Chain A, Haddock Structure Of The Talin F3 Domain In Complex With
Talin 1655-1822
Length = 174
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 677 PPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPR 712
P +CE+ + + SCLR +D Q L ++SQ+L PR
Sbjct: 8 PGQLECETAIAALNSCLRDLD-QASLAAVSQQLAPR 42
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 315 SNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED 374
SN V R + ++ FE + + + +G G + I QG VD+++ TSL G
Sbjct: 84 SNFVTR-VVTLLEFEVF-QPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSY 141
Query: 375 FGKLALVNNAPRL 387
FG++ L+ R+
Sbjct: 142 FGEICLLTRERRV 154
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALV 436
V +G G + I QG VD+++ TSL G FG++ L+
Sbjct: 105 VIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLL 148
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 334 KGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPR 386
+G+ +F+QGD G++ Y++ G V + G + L GE FG+++L++ R
Sbjct: 29 QGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGER 85
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 334 KGEILFHQGDEGKSWYIIIQGSVDV 358
+G+ LFH+GD G Y++ +G V +
Sbjct: 35 RGDTLFHEGDPGDRLYVVTEGKVKL 59
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDV 358
V+ E H GE + QG G +++II +G V+V
Sbjct: 179 VLEETHYENGEYIIRQGARGDTFFIISKGKVNV 211
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 340 HQGDEGKSWYIIIQGSVDVVIY--------------GKGCVTSLYAGEDFGKLALVNNAP 385
H + G S+ +I+QG + V+Y G GC +L+ + G L + + +
Sbjct: 14 HSLEVGPSYRLIMQGDCNFVLYDSGKPVWASNTGGLGSGCRLTLH---NNGNLVIYDQSN 70
Query: 386 RLIITSMVFHQGDEGKSWYIIIQGSVDVVIYG 417
R+I + + D + +++Q +VVIYG
Sbjct: 71 RVIWQTKTNGKEDH---YVLVLQQDRNVVIYG 99
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 321 ELAGVVMFEAHPRKG----------------EILFHQGDEGKSWYIIIQGSVDVVIYGKG 364
+LAG+ +F+ P +G ++L QG+ S+ +I GS +V G
Sbjct: 14 DLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDD 73
Query: 365 CVTSL---YAGEDFGKLALVNNAPR 386
V + G G++AL+ ++PR
Sbjct: 74 GVAIIARALPGMIVGEIALLRDSPR 98
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 335 GEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSL---YAGEDFGKLALVNNAPR 386
G++L QG+ S+ +I GS +V G V + G G++AL+ ++PR
Sbjct: 44 GQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGXIVGEIALLRDSPR 98
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
Length = 249
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 333 RKGEILFHQGDEGKSWYIIIQ-GSVDVVIYGKGCVTSLYAGEDFGKL 378
+KG I F +GDE ++ G+ DVV Y G + A E+ GK+
Sbjct: 139 KKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKV 185
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KGCVTSLYAGEDFGKLALVNNAP 385
M+ K + +GD G Y++ G V+V G K C ++ G+ FG+LA++ N
Sbjct: 46 MYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC--TMGPGKVFGELAILYNCT 103
Query: 386 R 386
R
Sbjct: 104 R 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,062,765
Number of Sequences: 62578
Number of extensions: 749841
Number of successful extensions: 1626
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 130
length of query: 714
length of database: 14,973,337
effective HSP length: 106
effective length of query: 608
effective length of database: 8,340,069
effective search space: 5070761952
effective search space used: 5070761952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)