Query psy11552
Match_columns 714
No_of_seqs 593 out of 3144
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:26:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f7z_A RAP guanine nucleotide 100.0 7.1E-74 2.4E-78 701.8 34.2 526 35-714 185-999 (999)
2 3cf6_E RAP guanine nucleotide 100.0 2.8E-57 9.7E-62 530.9 29.5 234 443-714 458-694 (694)
3 2ije_S Guanine nucleotide-rele 100.0 3.3E-51 1.1E-55 420.5 17.9 231 441-714 6-239 (240)
4 3qxl_A RAS-specific guanine nu 100.0 2.6E-47 9E-52 397.3 13.8 230 440-712 32-271 (271)
5 2ii0_A SOS-1, SON of sevenless 100.0 1.1E-43 3.8E-48 400.5 15.2 234 435-714 217-462 (490)
6 3ksy_A SOS-1, SON of sevenless 100.0 9.1E-41 3.1E-45 407.3 14.3 228 441-713 781-1020(1049)
7 1o7f_A CAMP-dependent RAP1 gua 99.9 6.6E-22 2.2E-26 222.0 23.3 187 166-392 240-426 (469)
8 3shr_A CGMP-dependent protein 99.9 4.1E-22 1.4E-26 210.2 16.4 183 284-483 20-271 (299)
9 3of1_A CAMP-dependent protein 99.9 2.1E-22 7E-27 205.3 13.6 174 299-489 3-240 (246)
10 4din_B CAMP-dependent protein 99.9 3.3E-22 1.1E-26 219.1 15.4 186 285-487 112-366 (381)
11 4f7z_A RAP guanine nucleotide 99.9 1.1E-21 3.6E-26 240.3 18.0 108 282-391 21-134 (999)
12 3tnp_B CAMP-dependent protein 99.9 1E-21 3.5E-26 217.7 15.5 185 287-487 129-390 (416)
13 2qcs_B CAMP-dependent protein 99.9 1.5E-21 5.1E-26 204.7 15.5 183 284-483 20-271 (291)
14 2ysr_A DEP domain-containing p 99.8 5.2E-21 1.8E-25 169.6 8.3 72 56-204 23-104 (105)
15 1uhw_A Pleckstrin; three-helix 99.8 6.1E-20 2.1E-24 162.1 8.7 85 46-207 9-105 (109)
16 1v3f_A Pleckstrin 2; three-hel 99.8 1E-19 3.5E-24 165.1 10.3 90 46-212 9-111 (120)
17 1fsh_A Dishevelled-1; three-he 99.8 4.7E-19 1.6E-23 157.1 6.7 82 46-204 22-104 (105)
18 1o7f_A CAMP-dependent RAP1 gua 99.7 1.6E-17 5.3E-22 186.3 18.7 108 283-392 22-135 (469)
19 2cso_A Pleckstrin; DEP domain, 99.7 2.2E-18 7.6E-23 156.3 8.0 84 46-206 19-114 (127)
20 3ml6_A Chimeric complex betwee 99.6 2.8E-15 9.4E-20 163.0 8.7 84 47-207 11-95 (385)
21 3t6a_A Breast cancer anti-estr 99.5 8.4E-15 2.9E-19 151.1 9.7 113 485-599 97-215 (333)
22 3ocp_A PRKG1 protein; serine/t 99.5 1E-13 3.5E-18 128.6 11.9 104 287-392 7-110 (139)
23 3idb_B CAMP-dependent protein 99.5 1.7E-13 5.8E-18 130.5 11.7 105 287-392 22-129 (161)
24 3pna_A CAMP-dependent protein 99.5 2.6E-13 8.8E-18 128.3 11.9 106 285-392 20-125 (154)
25 2d93_A RAP guanine nucleotide 99.5 7.4E-14 2.5E-18 128.8 7.5 103 288-392 1-105 (134)
26 3t6g_A SH2 domain-containing p 99.4 1.8E-13 6.2E-18 141.2 9.7 109 485-599 98-214 (331)
27 2pbi_A Regulator of G-protein 99.4 5E-13 1.7E-17 146.2 9.5 94 37-208 14-110 (424)
28 2ptm_A Hyperpolarization-activ 99.4 1.4E-12 4.9E-17 128.6 10.2 94 298-392 66-159 (198)
29 4f8a_A Potassium voltage-gated 99.3 3.9E-12 1.3E-16 120.2 10.7 98 293-392 17-116 (160)
30 3gyd_A CNMP-BD protein, cyclic 99.3 3.9E-12 1.3E-16 124.6 10.8 100 292-392 28-131 (187)
31 1vp6_A CNBD, cyclic-nucleotide 99.3 4.3E-12 1.5E-16 117.0 8.9 94 295-392 3-96 (138)
32 3mdp_A Cyclic nucleotide-bindi 99.3 2.4E-12 8.3E-17 119.0 7.1 89 303-392 6-101 (142)
33 3bpz_A Potassium/sodium hyperp 99.3 4.3E-12 1.5E-16 125.7 9.2 92 299-392 68-159 (202)
34 2z69_A DNR protein; beta barre 99.3 1.3E-11 4.4E-16 115.7 11.0 94 298-392 7-105 (154)
35 3ukn_A Novel protein similar t 99.3 2.1E-12 7.2E-17 128.8 5.6 90 301-392 73-164 (212)
36 2pqq_A Putative transcriptiona 99.3 9.7E-12 3.3E-16 115.8 8.4 90 302-392 4-97 (149)
37 3of1_A CAMP-dependent protein 99.2 2.8E-11 9.5E-16 122.6 10.8 93 300-393 122-214 (246)
38 4ava_A Lysine acetyltransferas 99.2 4.3E-11 1.5E-15 127.7 10.4 90 302-392 12-104 (333)
39 4ev0_A Transcription regulator 99.2 5.3E-11 1.8E-15 118.3 9.9 87 305-392 1-91 (216)
40 3d0s_A Transcriptional regulat 99.2 3.3E-11 1.1E-15 121.0 7.7 91 301-392 4-98 (227)
41 3fx3_A Cyclic nucleotide-bindi 99.2 6.3E-11 2.2E-15 119.7 9.3 93 299-392 7-103 (237)
42 3e97_A Transcriptional regulat 99.1 4.7E-11 1.6E-15 120.2 7.9 90 302-392 5-98 (231)
43 1wgp_A Probable cyclic nucleot 99.1 2.2E-11 7.5E-16 112.2 4.8 88 304-392 7-108 (137)
44 1zyb_A Transcription regulator 99.1 1.3E-10 4.4E-15 117.5 10.9 94 299-392 14-113 (232)
45 3dn7_A Cyclic nucleotide bindi 99.1 1.1E-10 3.7E-15 114.3 9.4 88 304-392 8-100 (194)
46 2qcs_B CAMP-dependent protein 99.1 3.3E-10 1.1E-14 118.1 13.0 91 301-392 155-250 (291)
47 3shr_A CGMP-dependent protein 99.1 1E-10 3.5E-15 122.7 9.1 93 299-392 153-250 (299)
48 3dkw_A DNR protein; CRP-FNR, H 99.1 6.3E-11 2.2E-15 118.7 6.2 91 301-392 7-102 (227)
49 3dv8_A Transcriptional regulat 99.1 2.3E-10 8E-15 113.9 10.0 89 303-392 3-97 (220)
50 3iwz_A CAP-like, catabolite ac 99.1 2.5E-10 8.5E-15 114.6 10.0 91 301-392 9-104 (230)
51 2gau_A Transcriptional regulat 99.0 2.3E-10 7.9E-15 115.2 7.4 85 307-392 14-102 (232)
52 3tnp_B CAMP-dependent protein 99.0 6.1E-10 2.1E-14 123.0 10.9 89 303-392 267-365 (416)
53 4din_B CAMP-dependent protein 99.0 2.5E-10 8.4E-15 124.7 7.3 92 300-392 245-341 (381)
54 3ryp_A Catabolite gene activat 98.9 1.7E-09 5.8E-14 106.8 9.3 83 309-392 2-89 (210)
55 2oz6_A Virulence factor regula 98.9 4.3E-09 1.5E-13 103.6 9.9 78 314-392 1-86 (207)
56 3kcc_A Catabolite gene activat 98.9 3.1E-09 1.1E-13 109.4 9.1 82 310-392 53-139 (260)
57 1o5l_A Transcriptional regulat 98.8 4.4E-09 1.5E-13 104.7 6.0 85 307-392 3-92 (213)
58 2fmy_A COOA, carbon monoxide o 98.8 2.7E-09 9.3E-14 106.5 4.3 81 304-392 5-88 (220)
59 1ft9_A Carbon monoxide oxidati 98.7 4E-09 1.4E-13 105.5 3.0 80 305-392 2-84 (222)
60 3beh_A MLL3241 protein; transm 98.7 3.3E-09 1.1E-13 114.5 0.8 87 302-392 227-313 (355)
61 3e6c_C CPRK, cyclic nucleotide 98.7 2E-08 6.9E-13 102.3 6.5 84 305-392 11-98 (250)
62 3b02_A Transcriptional regulat 98.6 5.1E-08 1.7E-12 95.4 7.8 62 330-392 2-67 (195)
63 2bgc_A PRFA; bacterial infecti 98.6 7.7E-08 2.6E-12 97.3 7.9 80 312-392 2-88 (238)
64 3la7_A Global nitrogen regulat 98.5 1.9E-07 6.5E-12 94.8 8.6 76 316-392 30-114 (243)
65 2zcw_A TTHA1359, transcription 98.4 3.2E-07 1.1E-11 90.1 6.3 65 327-392 5-75 (202)
66 3b02_A Transcriptional regulat 97.7 8.2E-05 2.8E-09 72.3 8.9 137 393-552 10-163 (195)
67 2ptm_A Hyperpolarization-activ 97.7 2.2E-05 7.4E-10 76.7 4.6 73 393-480 105-177 (198)
68 3ocp_A PRKG1 protein; serine/t 97.6 4E-05 1.4E-09 70.0 4.0 72 393-480 57-128 (139)
69 3ukn_A Novel protein similar t 97.6 4.1E-05 1.4E-09 75.6 4.1 73 393-481 109-183 (212)
70 3bpz_A Potassium/sodium hyperp 97.5 4.7E-05 1.6E-09 74.6 4.3 72 393-480 106-177 (202)
71 3d0s_A Transcriptional regulat 97.5 0.00024 8.2E-09 70.5 9.4 142 393-553 40-202 (227)
72 3mdp_A Cyclic nucleotide-bindi 97.5 6.6E-05 2.3E-09 68.4 4.3 73 393-480 40-119 (142)
73 3pna_A CAMP-dependent protein 97.5 6.5E-05 2.2E-09 70.1 4.3 72 393-480 72-143 (154)
74 2gau_A Transcriptional regulat 97.4 0.00025 8.5E-09 70.6 8.4 142 393-553 44-205 (232)
75 4f8a_A Potassium voltage-gated 97.4 0.00012 4E-09 68.3 5.0 85 393-500 61-147 (160)
76 4ev0_A Transcription regulator 97.4 0.00049 1.7E-08 67.5 9.7 73 393-480 33-109 (216)
77 2pqq_A Putative transcriptiona 97.4 0.00014 4.8E-09 66.6 5.4 72 393-479 39-114 (149)
78 1zyb_A Transcription regulator 97.4 0.00025 8.5E-09 70.9 7.4 77 393-484 54-135 (232)
79 3idb_B CAMP-dependent protein 97.4 0.00011 3.9E-09 68.9 4.6 73 393-480 72-147 (161)
80 3e97_A Transcriptional regulat 97.4 0.00038 1.3E-08 69.2 8.6 141 393-553 40-200 (231)
81 2oz6_A Virulence factor regula 97.3 0.00022 7.6E-09 69.5 6.0 73 393-480 24-104 (207)
82 1vp6_A CNBD, cyclic-nucleotide 97.3 0.00012 4E-09 66.5 3.6 68 393-478 45-112 (138)
83 3dkw_A DNR protein; CRP-FNR, H 97.3 0.00021 7.2E-09 70.7 5.3 74 393-481 43-121 (227)
84 2z69_A DNR protein; beta barre 97.3 0.00019 6.6E-09 66.2 4.6 71 393-478 46-121 (154)
85 4ava_A Lysine acetyltransferas 97.3 0.00023 7.9E-09 75.2 5.8 73 393-480 47-122 (333)
86 3fx3_A Cyclic nucleotide-bindi 97.2 0.00063 2.2E-08 67.9 8.3 74 393-481 45-122 (237)
87 3gyd_A CNMP-BD protein, cyclic 97.2 0.00016 5.5E-09 70.0 3.1 71 393-478 73-147 (187)
88 2ysr_A DEP domain-containing p 97.2 0.00018 6E-09 63.3 2.9 20 96-115 66-85 (105)
89 1o5l_A Transcriptional regulat 97.2 0.00041 1.4E-08 68.3 6.0 73 393-480 33-110 (213)
90 3ryp_A Catabolite gene activat 97.1 0.00087 3E-08 65.3 8.2 73 393-480 30-107 (210)
91 1uhw_A Pleckstrin; three-helix 97.1 0.0002 6.7E-09 63.1 3.0 31 96-126 56-106 (109)
92 3kcc_A Catabolite gene activat 97.1 0.00085 2.9E-08 68.4 8.2 73 393-480 80-157 (260)
93 3dv8_A Transcriptional regulat 97.1 0.0014 4.7E-08 64.4 9.2 142 393-553 37-194 (220)
94 3dn7_A Cyclic nucleotide bindi 97.1 0.00035 1.2E-08 67.5 4.7 73 393-480 41-118 (194)
95 3la7_A Global nitrogen regulat 97.1 0.0017 5.9E-08 65.3 9.7 144 393-553 54-218 (243)
96 2d93_A RAP guanine nucleotide 97.1 0.00013 4.4E-09 66.2 1.1 72 393-480 51-123 (134)
97 2zcw_A TTHA1359, transcription 97.0 0.0011 3.7E-08 64.5 7.8 137 393-553 16-171 (202)
98 3iwz_A CAP-like, catabolite ac 97.0 0.0013 4.4E-08 65.1 8.4 73 393-480 45-122 (230)
99 2bgc_A PRFA; bacterial infecti 96.9 0.0021 7.1E-08 64.3 8.9 73 393-480 29-107 (238)
100 3e6c_C CPRK, cyclic nucleotide 96.9 0.0036 1.2E-07 63.0 10.5 139 393-553 43-202 (250)
101 1v3f_A Pleckstrin 2; three-hel 96.8 0.00059 2E-08 61.5 3.2 21 96-116 56-76 (120)
102 2cso_A Pleckstrin; DEP domain, 96.8 0.00063 2.1E-08 61.6 3.2 29 96-124 66-114 (127)
103 1wgp_A Probable cyclic nucleot 96.8 0.00046 1.6E-08 62.5 2.3 77 393-478 40-124 (137)
104 1fsh_A Dishevelled-1; three-he 96.6 0.00077 2.6E-08 59.2 2.7 27 96-122 70-104 (105)
105 2fmy_A COOA, carbon monoxide o 96.5 0.0072 2.5E-07 59.3 9.4 135 393-553 38-192 (220)
106 3cf6_E RAP guanine nucleotide 96.2 0.0017 5.9E-08 75.9 3.1 120 290-478 19-138 (694)
107 3beh_A MLL3241 protein; transm 95.9 0.0013 4.4E-08 70.5 0.0 72 393-482 262-333 (355)
108 1ft9_A Carbon monoxide oxidati 95.5 0.027 9.2E-07 55.3 8.0 66 393-480 34-102 (222)
109 3ml6_A Chimeric complex betwee 94.9 0.012 4.2E-07 63.6 3.4 35 96-130 58-100 (385)
110 2pbi_A Regulator of G-protein 85.6 0.38 1.3E-05 52.5 3.0 27 97-123 70-107 (424)
111 3fjs_A Uncharacterized protein 73.7 4.9 0.00017 34.8 5.7 47 327-375 38-84 (114)
112 3lwc_A Uncharacterized protein 73.0 7 0.00024 34.4 6.6 46 328-376 43-88 (119)
113 2ozj_A Cupin 2, conserved barr 70.8 5.7 0.00019 34.0 5.4 43 331-375 44-86 (114)
114 1o5u_A Novel thermotoga mariti 70.0 13 0.00043 31.7 7.3 58 315-375 21-78 (101)
115 3rns_A Cupin 2 conserved barre 67.5 8.5 0.00029 37.8 6.5 46 327-374 39-84 (227)
116 1yhf_A Hypothetical protein SP 67.5 9.2 0.00031 32.6 6.0 47 327-375 42-88 (115)
117 4e2g_A Cupin 2 conserved barre 65.3 9.3 0.00032 33.2 5.7 47 327-375 43-89 (126)
118 2pfw_A Cupin 2, conserved barr 64.7 9.5 0.00032 32.5 5.6 47 327-375 36-82 (116)
119 2gu9_A Tetracenomycin polyketi 64.1 10 0.00034 31.9 5.6 47 327-375 23-72 (113)
120 1v70_A Probable antibiotics sy 63.9 11 0.00037 31.0 5.7 47 327-375 30-77 (105)
121 2fqp_A Hypothetical protein BP 62.1 6.2 0.00021 32.9 3.8 50 327-376 20-70 (97)
122 3h8u_A Uncharacterized conserv 59.8 10 0.00035 32.9 5.0 48 327-375 41-89 (125)
123 2pyt_A Ethanolamine utilizatio 57.0 11 0.00037 33.9 4.6 45 328-376 60-104 (133)
124 3rns_A Cupin 2 conserved barre 53.2 19 0.00064 35.3 6.1 47 327-375 155-201 (227)
125 3ibm_A Cupin 2, conserved barr 52.8 17 0.00058 33.8 5.4 47 327-375 58-104 (167)
126 1y9q_A Transcriptional regulat 52.8 18 0.00063 34.0 5.8 46 328-375 107-154 (192)
127 1o4t_A Putative oxalate decarb 52.4 18 0.00062 32.0 5.4 46 328-375 60-106 (133)
128 2bnm_A Epoxidase; oxidoreducta 50.8 12 0.0004 35.5 4.1 49 327-375 119-172 (198)
129 4b29_A Dimethylsulfoniopropion 50.3 19 0.00064 35.3 5.3 44 331-375 138-181 (217)
130 2f4p_A Hypothetical protein TM 50.1 24 0.00082 31.9 5.9 48 327-375 50-97 (147)
131 2vpv_A Protein MIF2, MIF2P; nu 49.3 11 0.00036 35.5 3.3 46 329-376 92-139 (166)
132 3kgz_A Cupin 2 conserved barre 49.3 15 0.0005 34.0 4.3 47 327-375 46-92 (156)
133 3es1_A Cupin 2, conserved barr 48.7 12 0.00042 35.3 3.7 48 327-375 81-128 (172)
134 1sfn_A Conserved hypothetical 48.3 24 0.00082 35.0 6.0 45 327-375 52-96 (246)
135 1sfn_A Conserved hypothetical 47.7 19 0.00066 35.7 5.2 49 326-376 166-215 (246)
136 4axo_A EUTQ, ethanolamine util 46.9 16 0.00055 33.7 4.1 30 344-375 83-112 (151)
137 1vj2_A Novel manganese-contain 46.8 17 0.00058 31.7 4.2 46 328-375 51-96 (126)
138 3jzv_A Uncharacterized protein 46.5 15 0.00051 34.3 3.9 47 327-375 55-101 (166)
139 2b8m_A Hypothetical protein MJ 46.1 16 0.00056 31.2 3.9 46 329-375 31-76 (117)
140 2opk_A Hypothetical protein; p 44.8 16 0.00053 31.5 3.5 45 332-376 37-84 (112)
141 4i4a_A Similar to unknown prot 44.6 23 0.00078 30.7 4.7 47 327-375 36-82 (128)
142 3l2h_A Putative sugar phosphat 43.9 17 0.00059 33.2 3.9 47 327-375 48-96 (162)
143 3bcw_A Uncharacterized protein 43.7 13 0.00046 32.8 2.9 43 332-376 56-98 (123)
144 1dgw_A Canavalin; duplicated s 43.3 23 0.00078 33.3 4.7 50 327-376 43-94 (178)
145 3h7j_A Bacilysin biosynthesis 41.3 32 0.0011 33.9 5.7 44 329-374 38-81 (243)
146 3i7d_A Sugar phosphate isomera 40.4 22 0.00076 32.8 4.0 48 327-376 45-94 (163)
147 3es4_A Uncharacterized protein 39.4 15 0.0005 32.4 2.4 43 332-376 49-91 (116)
148 4e2q_A Ureidoglycine aminohydr 38.4 18 0.00062 36.6 3.2 47 327-375 72-119 (266)
149 2q30_A Uncharacterized protein 38.0 43 0.0015 27.7 5.2 48 327-375 35-84 (110)
150 1sef_A Conserved hypothetical 38.0 32 0.0011 34.6 5.2 47 327-375 184-231 (274)
151 1lr5_A Auxin binding protein 1 37.8 25 0.00087 32.1 4.0 49 327-375 43-98 (163)
152 2oa2_A BH2720 protein; 1017534 37.8 37 0.0013 30.5 5.0 48 328-375 46-98 (148)
153 3cew_A Uncharacterized cupin p 35.6 36 0.0012 29.3 4.5 47 327-375 28-76 (125)
154 1yfu_A 3-hydroxyanthranilate-3 34.9 32 0.0011 32.4 4.0 35 343-377 53-89 (174)
155 3bu7_A Gentisate 1,2-dioxygena 34.1 29 0.001 37.1 4.2 48 327-376 296-343 (394)
156 3h7j_A Bacilysin biosynthesis 33.8 28 0.00095 34.3 3.8 47 328-376 148-195 (243)
157 1y3t_A Hypothetical protein YX 33.5 48 0.0016 34.0 5.7 47 327-375 48-95 (337)
158 1j58_A YVRK protein; cupin, de 33.0 52 0.0018 34.7 6.0 49 327-375 259-311 (385)
159 1sq4_A GLXB, glyoxylate-induce 32.9 25 0.00085 35.7 3.3 47 327-375 70-118 (278)
160 2vqa_A SLL1358 protein, MNCA; 32.4 61 0.0021 33.7 6.4 50 327-376 236-289 (361)
161 1rc6_A Hypothetical protein YL 32.0 25 0.00086 35.1 3.1 48 327-376 61-110 (261)
162 1fi2_A Oxalate oxidase, germin 32.0 91 0.0031 29.6 7.1 49 327-375 74-129 (201)
163 1zvf_A 3-hydroxyanthranilate 3 31.9 35 0.0012 32.1 3.8 35 342-376 51-91 (176)
164 3ht1_A REMF protein; cupin fol 31.8 24 0.00083 31.1 2.7 44 330-375 44-89 (145)
165 2vqa_A SLL1358 protein, MNCA; 31.3 64 0.0022 33.5 6.4 49 327-375 54-106 (361)
166 1sq4_A GLXB, glyoxylate-induce 30.8 50 0.0017 33.3 5.2 48 326-375 192-240 (278)
167 1rc6_A Hypothetical protein YL 30.7 37 0.0013 33.8 4.2 47 327-375 181-228 (261)
168 1j58_A YVRK protein; cupin, de 28.9 76 0.0026 33.4 6.4 49 327-375 81-132 (385)
169 2o8q_A Hypothetical protein; c 28.4 40 0.0014 29.4 3.5 41 334-375 52-93 (134)
170 1sef_A Conserved hypothetical 28.1 32 0.0011 34.6 3.1 48 327-376 64-113 (274)
171 3d82_A Cupin 2, conserved barr 27.6 44 0.0015 27.2 3.4 28 346-375 51-78 (102)
172 3bu7_A Gentisate 1,2-dioxygena 25.1 52 0.0018 35.2 4.2 48 327-375 125-172 (394)
173 2d40_A Z3393, putative gentisa 25.1 45 0.0016 35.0 3.7 48 327-375 102-149 (354)
174 3d0j_A Uncharacterized protein 24.0 71 0.0024 28.9 4.2 37 339-375 44-86 (140)
175 2i45_A Hypothetical protein; n 24.0 30 0.001 29.0 1.7 41 332-375 35-77 (107)
176 2ea7_A 7S globulin-1; beta bar 22.8 72 0.0024 34.6 4.8 50 326-375 62-113 (434)
177 2o1q_A Putative acetyl/propion 22.4 56 0.0019 29.4 3.3 49 327-377 46-96 (145)
178 2d40_A Z3393, putative gentisa 22.2 81 0.0028 33.1 5.0 46 329-376 272-317 (354)
179 2cav_A Protein (canavalin); vi 20.9 83 0.0028 34.2 4.8 51 326-376 87-139 (445)
180 3myx_A Uncharacterized protein 20.7 65 0.0022 31.9 3.6 31 345-376 186-216 (238)
No 1
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=7.1e-74 Score=701.83 Aligned_cols=526 Identities=48% Similarity=0.840 Sum_probs=449.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccc
Q psy11552 35 SSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYH 114 (714)
Q Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~h 114 (714)
..++..+..+|..++.......+..++||+++. +++++|+.|.++++|+.....+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~e~~d~~~~~~~~----------------------- 239 (999)
T 4f7z_A 185 NVPSEKILRAGKILRIAILSRAPHMIRDRKYHL--KTYRQCCVGTELVDWMIQQTSC----------------------- 239 (999)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHCGGGSEEEEETT--EEEEEEEEHHHHHHHHHHHCSS-----------------------
T ss_pred cCchhhcccccccccchhccccccccccccccc--cccccccccccccccccccCcc-----------------------
Confidence 346788999999999999888899999999999 9999999999999999998885
Q ss_pred cceeeEeecCCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccc
Q psy11552 115 GKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAF 194 (714)
Q Consensus 115 v~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F 194 (714)
+.+|.+++.+||.+++.|++.|+..++.|
T Consensus 240 ---------------------------------------------------~~~~~~~~~~~q~~l~~~~~~~~~~~~~~ 268 (999)
T 4f7z_A 240 ---------------------------------------------------VHSRTQAVGMWQVLLEDGVLNHVDQERHF 268 (999)
T ss_dssp ---------------------------------------------------CCCHHHHHHHHHHHHHTTSEEETTCCSSC
T ss_pred ---------------------------------------------------cccccccchhhhhhccccccccchhcccc
Confidence 69999999999999999999999999999
Q ss_pred cCcCceeeeccCccCCCCCCchhhhHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhhH
Q psy11552 195 RDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIEDKE 274 (714)
Q Consensus 195 ~d~~~~Yrf~~d~~~~~~~~~~~~~~~~ee~l~e~l~~l~q~~~~~~~r~ilr~~~k~l~~r~l~~~~~~~l~~e~~~~~ 274 (714)
+|...+|+|..+.......+...+.....+...+....+.+..|++..+.++++.
T Consensus 269 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~l~k~------------------------- 323 (999)
T 4f7z_A 269 QDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKP------------------------- 323 (999)
T ss_dssp CSSSCEEEEGGGGSTTCCCCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSC-------------------------
T ss_pred ccchhhhhhhccccccccccccccccchhhhhhhhhhhhcccccchhhhhhhcCC-------------------------
Confidence 9999999999988888888887777778888888889999888887777776664
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEe
Q psy11552 275 EEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQG 354 (714)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G 354 (714)
+..++.++++.+.++|.++++|++|+..++++|+.++.++.++++|++|++|||.|++||||++|
T Consensus 324 ---------------~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG 388 (999)
T 4f7z_A 324 ---------------PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKG 388 (999)
T ss_dssp ---------------GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEES
T ss_pred ---------------cccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEee
Confidence 78889999999999999999999999999999999766677789999999999999999999999
Q ss_pred EEEEEEeCceEEEEecCCCccchhhhccCCCcceeeec------------------------------------cc----
Q psy11552 355 SVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSM------------------------------------VF---- 394 (714)
Q Consensus 355 ~V~V~~~~~~~v~~l~~Gd~FGElaLl~~~pr~atv~A------------------------------------i~---- 394 (714)
+|+|++.+++.+++|++||+|||+|++++.||+|||+| ++
T Consensus 389 ~V~V~~~~~~~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~~~~~~~e~~~~v~v~e~~ 468 (999)
T 4f7z_A 389 SVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDVEANTVRLKEHDQDVLVLEKV 468 (999)
T ss_dssp EEEEEETTTEEEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHHSEEEEESSSSEEEEEECC
T ss_pred EEEEEEcCCcceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHHhhhHhhhcccceeEEEEe
Confidence 99999988889999999999999999999999999998 00
Q ss_pred ---ccC-----CCCceEEEEEeCeEEEEeec------------------------ceeee------------e-------
Q psy11552 395 ---HQG-----DEGKSWYIIIQGSVDVVIYG------------------------KGCVT------------S------- 423 (714)
Q Consensus 395 ---~~g-----~~~~~~YiI~~G~~~~~~~~------------------------~~~v~------------~------- 423 (714)
.+| ......|+|++|+++++.++ ++..| +
T Consensus 469 ~~~~~~~~~~~~~~~~~~~v~~gT~ekLie~L~~~~~~~~~~~~~~~~f~~~FLlTyr~F~t~~~ll~~Li~r~~~~~~~ 548 (999)
T 4f7z_A 469 PAGNRAANQGNSQPQQKYTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQ 548 (999)
T ss_dssp -----------------CEEEEECHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCSS
T ss_pred eccccCCCCCCCccceeeEEeecCHHHHHHHHhcccccCcccccchhhHHHHHHHhccccCCcHHHHHHHHHHHcCCCCc
Confidence 001 11245699999998876643 00000 0
Q ss_pred --------------------------ecCCCccch---hhhh--------------------------------------
Q psy11552 424 --------------------------LYAGEDFGK---LALV-------------------------------------- 436 (714)
Q Consensus 424 --------------------------l~~gd~fge---~~~L-------------------------------------- 436 (714)
.+++|+... ..+|
T Consensus 549 ~~~~~~~~~~~~~~~rv~~vl~~Wv~~~~~df~~d~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 628 (999)
T 4f7z_A 549 GTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAP 628 (999)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHHHHHHCSSCCHHHHTHHHHHHHHHHHTTSCSCCC
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHhCCchhccCHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhhhcccccccc
Confidence 011221110 0000
Q ss_pred --------------------------------------------------------------------------------
Q psy11552 437 -------------------------------------------------------------------------------- 436 (714)
Q Consensus 437 -------------------------------------------------------------------------------- 436 (714)
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 708 (999)
T 4f7z_A 629 QKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEK 708 (999)
T ss_dssp CEECC-----------CCCCCCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCSCEEEEEECTTCCE
T ss_pred ccccchhhhccccccccccccCCCCCccchhhhccccccccccccCCccccHHHHHHhhhhhccCCCcceeeccccCCcc
Confidence
Q ss_pred ------------------------------------------------cCCchhHHHHHHh--hhheeeeeccccccCCc
Q psy11552 437 ------------------------------------------------NNAPSYQLHMYLE--QMAVYFTTTAPDIKGPR 466 (714)
Q Consensus 437 ------------------------------------------------~~~p~~~~~~~l~--~~~ly~~itv~ei~~p~ 466 (714)
.+-.+.++|+||| ++++|+++.+.|+
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~---- 784 (999)
T 4f7z_A 709 VVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELEL---- 784 (999)
T ss_dssp EECCTTCBCCSTTSCTTCEEEEEEGGGSSSCCCCTTTTCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHH----
T ss_pred ccCCccccccccccccccccccccccccccCCCchhhcccccccccchhcCCHHHHHHHHHHHHHHHHcCCCHHHH----
Confidence 0001235899988 5579999999997
Q ss_pred eeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHhcCchhhh
Q psy11552 467 RYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVS 546 (714)
Q Consensus 467 ~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~ 546 (714)
+...|++.+....+||+.+++++||.+++||+++||.++++++|+++|++||+||.+|+++||||+++||++||++++|+
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~ 864 (999)
T 4f7z_A 785 IYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVS 864 (999)
T ss_dssp HHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHH
T ss_pred HHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhh
Confidence 55677777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchhhchhccccCCCCccCCcccHHHHHHHHH
Q psy11552 547 RLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQ 626 (714)
Q Consensus 547 RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~Dl~~i~egn~~~~~glINf~K~~~i~~ 626 (714)
||++||+.||++.++.|++|+.++++++||++||.+++++++|||||||+||+||+|+++|||++++|+|||+|++++++
T Consensus 865 RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~~linf~k~~~~~~ 944 (999)
T 4f7z_A 865 RLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIAN 944 (999)
T ss_dssp TCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHHHTSCSBSSSSEEHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeeceehHHHHHHHHHhccCCCCCCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred HHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCChHHHHHHHhhCCCCCCHHHHHHH
Q psy11552 627 TLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPT-PKCESEVKSYVSCLRAMDNQRILTSM 705 (714)
Q Consensus 627 ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~~~-~~~~~~i~~yi~~~~~~~~~~~L~~l 705 (714)
+|.+| +.||+.+|++.+.. .+...+++.|+.++++++|+++||++
T Consensus 945 ~i~~i----------------------------------~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 990 (999)
T 4f7z_A 945 TARTV----------------------------------RYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRTLSQM 990 (999)
T ss_dssp HHHHH----------------------------------HHHTSSCCCCSSCC--CCCHHHHHHHHTCCCCCCHHHHHHH
T ss_pred HHHHH----------------------------------HHHhcCCCCCCccchhhhHHHHHHHHHhCCCCCCHHHHHHH
Confidence 55555 45555566655422 24567899999999999999999999
Q ss_pred HhhcCCCCC
Q psy11552 706 SQKLEPRRS 714 (714)
Q Consensus 706 S~~lEPr~~ 714 (714)
|+++|||++
T Consensus 991 S~~~EPr~p 999 (999)
T 4f7z_A 991 SHRLEPRRP 999 (999)
T ss_dssp HHTTSCC--
T ss_pred HHhcCCCCC
Confidence 999999985
No 2
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=2.8e-57 Score=530.86 Aligned_cols=234 Identities=56% Similarity=0.936 Sum_probs=208.2
Q ss_pred HHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHH
Q psy11552 443 QLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 520 (714)
Q Consensus 443 ~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~i 520 (714)
++|+||| ++++|+++.+.|+ +...|++.+....+||+..++++||.+++||+++||.++++++|++++++||+|
T Consensus 458 elA~QLTl~d~~lf~~I~~~E~----l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~i 533 (694)
T 3cf6_E 458 DLAYQMTTYDWELFNCVHELEL----IYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKI 533 (694)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHH----HHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHH----HHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4899998 5579999999997 556677777777899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchhhc
Q psy11552 521 AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKD 600 (714)
Q Consensus 521 A~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~D 600 (714)
|.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.++++++||++||.+++++++|||||+|+||+|
T Consensus 534 A~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg~~L~D 613 (694)
T 3cf6_E 534 AAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKD 613 (694)
T ss_dssp HHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCccCCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC-
Q psy11552 601 LAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPT- 679 (714)
Q Consensus 601 l~~i~egn~~~~~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~~~- 679 (714)
|+|+++|||++++|+|||+|++++++++..+..||+. +|++.++.
T Consensus 614 L~fi~egn~~~~~~lINf~K~r~i~~ii~~i~~~q~~----------------------------------~y~~~~~~~ 659 (694)
T 3cf6_E 614 MTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQ----------------------------------PFNPDAAQA 659 (694)
T ss_dssp HHHHHHHSCSEETTEEEHHHHHHHHHHHHHHHHHTSS----------------------------------CCC------
T ss_pred HHHHHcCCCchhccCcCHHHHHHHHHHHHHHHHHhhC----------------------------------CCCcCcccc
Confidence 9999999999999999999999996666666655554 44443321
Q ss_pred CCChHHHHHHHhhCCCCCCHHHHHHHHhhcCCCCC
Q psy11552 680 PKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS 714 (714)
Q Consensus 680 ~~~~~~i~~yi~~~~~~~~~~~L~~lS~~lEPr~~ 714 (714)
.+..+++++|+.++++++|+++||++|+++|||.+
T Consensus 660 ~~~~~~i~~~l~~l~~~~~e~~l~~lSl~~EPr~~ 694 (694)
T 3cf6_E 660 NKNHQDVRSYVRQLNVIDNQRTLSQMSHRLEPRRP 694 (694)
T ss_dssp ---CHHHHHHHTSCCCCCCHHHHHHHHHHHCC---
T ss_pred ccchHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCC
Confidence 13367899999999999999999999999999975
No 3
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=3.3e-51 Score=420.52 Aligned_cols=231 Identities=22% Similarity=0.389 Sum_probs=212.0
Q ss_pred hhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHH
Q psy11552 441 SYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMI 518 (714)
Q Consensus 441 ~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI 518 (714)
+.++|+||| ++++|+++++.|+ +...|++.+....+|++..++++||.+++||+++||.++++++|++++++||
T Consensus 6 p~eiA~QLTl~d~~lf~~I~~~E~----l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI 81 (240)
T 2ije_S 6 ALEIAEQLTLLDHLVFKSIPYEEF----FGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWV 81 (240)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGG----GGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHH----hhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 346899998 5579999999997 4455777666667999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchh
Q psy11552 519 KLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL 598 (714)
Q Consensus 519 ~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L 598 (714)
+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.++++++||++||.+++++++|||||+|+||
T Consensus 82 ~iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L 161 (240)
T 2ije_S 82 AVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYL 161 (240)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHH
T ss_pred HHHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhccccCCCCcc-CCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy11552 599 KDLAFTHDGNKTVV-DGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDP 677 (714)
Q Consensus 599 ~Dl~~i~egn~~~~-~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~ 677 (714)
+||+|+++|||++. +|+|||+|++++ +++++.++.||+.+|++.+
T Consensus 162 ~DL~~i~egnp~~~~~~lINf~K~~~~----------------------------------~~ii~~i~~~q~~~y~~~~ 207 (240)
T 2ije_S 162 TDLVFIEEGTPNYTEDGLVNFSKMRMI----------------------------------SHIIREIRQFQQTTYKIDP 207 (240)
T ss_dssp HHHHHHHHHSCSBCTTSCBCHHHHHHH----------------------------------HHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHhcCCCCCCCCcCcHHHHHHH----------------------------------HHHHHHHHHHhcCCCCCCC
Confidence 99999999999998 899999999999 5555556667777888887
Q ss_pred CCCCChHHHHHHHhhCCCCCCHHHHHHHHhhcCCCCC
Q psy11552 678 PTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS 714 (714)
Q Consensus 678 ~~~~~~~~i~~yi~~~~~~~~~~~L~~lS~~lEPr~~ 714 (714)
.+++++|+.+++.+.+++.||++|+++|||.+
T Consensus 208 -----~~~i~~~l~~~~~~~~e~~ly~~Sl~~EPr~~ 239 (240)
T 2ije_S 208 -----QPKVIQYLLDESFMLDEESLYESSLLIEPKLP 239 (240)
T ss_dssp -----CHHHHHHHHCCTTCCCHHHHHHHHHHHSCC--
T ss_pred -----CHHHHHHHHhCcCCCCHHHHHHHHHHhCCCCC
Confidence 88999999999878889999999999999975
No 4
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=2.6e-47 Score=397.26 Aligned_cols=230 Identities=23% Similarity=0.401 Sum_probs=205.2
Q ss_pred chhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHH
Q psy11552 440 PSYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM 517 (714)
Q Consensus 440 p~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~f 517 (714)
++.++|+||| ++++|+++++.|+ +...|++......+||+.+++++||.+++||+++||.++++++|++++++|
T Consensus 32 ~p~elA~QLTlid~~lF~~I~p~E~----l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kf 107 (271)
T 3qxl_A 32 TPEEFASQITLMDIPVFKAIQPEEL----ASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHF 107 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCHHHH----HHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHH----HHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4556999999 5579999999997 344566655556789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCC-CCccccccc
Q psy11552 518 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPL 596 (714)
Q Consensus 518 I~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~-~p~IPflg~ 596 (714)
|+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.++++++||++||+++++.. +|||||+|+
T Consensus 108 I~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IPflg~ 187 (271)
T 3qxl_A 108 VKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGI 187 (271)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBCCHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCCchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886 899999999
Q ss_pred hhhchhccccCCCCccCCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhc-CCC-
Q psy11552 597 LLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTR-HLV- 674 (714)
Q Consensus 597 ~L~Dl~~i~egn~~~~~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~-~~~- 674 (714)
||+||+|+++|||++.++++||.|+++++ ++++.|+.||+. +|+
T Consensus 188 ~L~DL~fi~~g~p~~~~~l~n~~k~~~~~----------------------------------~i~~~I~~~Q~~~~Y~~ 233 (271)
T 3qxl_A 188 YLLDLIYIDSAYPASGSIMENEQRSNQMN----------------------------------NILRIIADLQVSCSYDH 233 (271)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHH----------------------------------HHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHhcCCCcccccccHHHHHHHH----------------------------------HHHHHHHHHhhhccCCC
Confidence 99999999999999844467888999884 445555666666 884
Q ss_pred CCCCCCCChHHHHHHHhhCCCCC-----CHHHHHHHHhhcCCC
Q psy11552 675 LDPPTPKCESEVKSYVSCLRAMD-----NQRILTSMSQKLEPR 712 (714)
Q Consensus 675 ~~~~~~~~~~~i~~yi~~~~~~~-----~~~~L~~lS~~lEPr 712 (714)
+.+ .++|++|+.+++.++ ++|++|++|+++||+
T Consensus 234 ~~~-----~~~iq~~l~~~~~i~~~~~~~ed~~y~lSl~iEP~ 271 (271)
T 3qxl_A 234 LTT-----LPHVQKYLKSVRYIEELQKFVEDDNYKLSLRIEPG 271 (271)
T ss_dssp CCC-----CHHHHHHHHTSCCCGGGHHHHHHHHHHHHHHHCC-
T ss_pred CCC-----ChHHHHHHHHhHHHHhhcCCCHHHHHHHHHhcCCC
Confidence 877 899999999987765 478999999999995
No 5
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=1.1e-43 Score=400.53 Aligned_cols=234 Identities=22% Similarity=0.402 Sum_probs=206.0
Q ss_pred hhcCCchhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHH
Q psy11552 435 LVNNAPSYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQ 512 (714)
Q Consensus 435 ~L~~~p~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~ 512 (714)
+++-+ +.++|+||| ++++|+++.+.|+ +...|++.+....+||+..++++||.+++||+++||.++++++|++
T Consensus 217 ll~~~-p~elA~QLTlid~~lf~~I~~~E~----l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~ 291 (490)
T 2ii0_A 217 LLTLH-PIEIARQLTLLESDLYRAVQPSEL----VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVA 291 (490)
T ss_dssp TTTSC-HHHHHHHHHHHHHHHHHHCCGGGT----GGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hhccC-HHHHHHHHHHHHHHHHHCCCHHHH----HHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHH
Confidence 34333 446899998 5579999999998 4456677666667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccc
Q psy11552 513 ILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIP 592 (714)
Q Consensus 513 ~i~~fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP 592 (714)
++++||+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|..+ +++||++||.++++.++||||
T Consensus 292 ~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IP 369 (490)
T 2ii0_A 292 VVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVP 369 (490)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHH--HHHHHHHHHHHHHTCCSSCBC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHh--chHHHHHHHHHHhccCCCccc
Confidence 999999999999999999999999999999999999999999999999999999987 357999999999999999999
Q ss_pred cccchhhchhccccCCCCccC--C--cccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHH
Q psy11552 593 FMPLLLKDLAFTHDGNKTVVD--G--LVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYC 668 (714)
Q Consensus 593 flg~~L~Dl~~i~egn~~~~~--g--lINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~ 668 (714)
|||+||+||+|+++|||++++ | +|||+|++++++++.+| +.|
T Consensus 370 flg~~L~DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~~i----------------------------------~~~ 415 (490)
T 2ii0_A 370 FFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEI----------------------------------QQY 415 (490)
T ss_dssp CCHHHHHHHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHHHH----------------------------------GGG
T ss_pred CcHHHHHHHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHHHH----------------------------------HHH
Confidence 999999999999999999984 2 99999999995555554 555
Q ss_pred hhcCCCCCCCCCCChHHHHHHHhhCCCCC--C----HHHHHHHHhhcCCCCC
Q psy11552 669 RTRHLVLDPPTPKCESEVKSYVSCLRAMD--N----QRILTSMSQKLEPRRS 714 (714)
Q Consensus 669 q~~~~~~~~~~~~~~~~i~~yi~~~~~~~--~----~~~L~~lS~~lEPr~~ 714 (714)
|+.+|++.+ .++|+.||.++.++. + +|.||++|+++|||..
T Consensus 416 Q~~~Y~~~~-----~~~i~~~l~~l~~~~~~~e~~~ed~ly~~Sl~~EPr~~ 462 (490)
T 2ii0_A 416 QNQPYCLRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNP 462 (490)
T ss_dssp SSCCCSCCC-----CHHHHHHHHTCCTTTTSCHHHHHHHHHHHHHHHSCCTT
T ss_pred hcCCCCCCc-----cHHHHHHHHhccccccCchhhhHHHHHHHHHhhCCCCC
Confidence 666788777 889999999988764 2 4679999999999863
No 6
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=9.1e-41 Score=407.30 Aligned_cols=228 Identities=22% Similarity=0.397 Sum_probs=204.0
Q ss_pred hhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHH
Q psy11552 441 SYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMI 518 (714)
Q Consensus 441 ~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI 518 (714)
+.++|+||| ++++|+++.+.|+ +...|++......+||+..++.+||.+++||+++||.++++++|++++++||
T Consensus 781 ~~elA~QLTlid~~lf~~I~p~E~----l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI 856 (1049)
T 3ksy_A 781 PIEIARQLTLLESDLYRAVQPSEL----VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRII 856 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGG----SSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHH----HHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 345999999 5579999999998 4455667666677899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchh
Q psy11552 519 KLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL 598 (714)
Q Consensus 519 ~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L 598 (714)
+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.+ +++||++||.++++..+|||||||+||
T Consensus 857 ~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L 934 (1049)
T 3ksy_A 857 EILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYL 934 (1049)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTT--THHHHHHHHHHHTTCCSSCCCCTHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHHHhh--chHHHHHHHHHHhhCCCCccceeHHHH
Confidence 999999999999999999999999999999999999999999999999998 568999999999999999999999999
Q ss_pred hchhccccCCCCccC----CcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCC
Q psy11552 599 KDLAFTHDGNKTVVD----GLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLV 674 (714)
Q Consensus 599 ~Dl~~i~egn~~~~~----glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~ 674 (714)
+||+|+++|||++++ |+|||+|++++++++ ..++.||+.+|+
T Consensus 935 ~DL~~i~eg~p~~~~~~~~~lINf~K~~~~~~ii----------------------------------~~i~~~Q~~~Y~ 980 (1049)
T 3ksy_A 935 TNILKTEEGNPEVLKRHGKELINFSKRRKVAEIT----------------------------------GEIQQYQNQPYC 980 (1049)
T ss_dssp HHHHHHHHHSCSEEEETTEEEEEHHHHHHHHHHH----------------------------------HHHHTTTSSCCC
T ss_pred HHHHHHHccCCccccCCCCCeEcHHHHHHHHHHH----------------------------------HHHHHHhcCCCC
Confidence 999999999999973 799999999995554 445556667888
Q ss_pred CCCCCCCChHHHHHHHhhCCCCC--C----HHHHHHHHhhcCCCC
Q psy11552 675 LDPPTPKCESEVKSYVSCLRAMD--N----QRILTSMSQKLEPRR 713 (714)
Q Consensus 675 ~~~~~~~~~~~i~~yi~~~~~~~--~----~~~L~~lS~~lEPr~ 713 (714)
+.+ .++|++|+.++..+. + +|.+|++|+++|||.
T Consensus 981 ~~~-----~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~~EPr~ 1020 (1049)
T 3ksy_A 981 LRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRN 1020 (1049)
T ss_dssp CCC-----CHHHHHHHHSCCTTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred CCc-----chHHHHHHHhcccccccCchhhHHHHHHHHHHhCCCC
Confidence 887 889999999976654 2 356999999999985
No 7
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.89 E-value=6.6e-22 Score=221.99 Aligned_cols=187 Identities=52% Similarity=0.924 Sum_probs=171.9
Q ss_pred cCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeeccCccCCCCCCchhhhHHHHHHHHHHHHHHHhhCChHHHHHH
Q psy11552 166 AVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYI 245 (714)
Q Consensus 166 ~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~~d~~~~~~~~~~~~~~~~ee~l~e~l~~l~q~~~~~~~r~i 245 (714)
..||..+..+++.|.++|+|.+..+...|.|...||+|..++.+..+.++.++.....+.+.+++.++.++.|++.++.+
T Consensus 240 t~SR~~~~~~l~~L~~~G~I~~~~~~i~i~d~~~L~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (469)
T 1o7f_A 240 VHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMI 319 (469)
T ss_dssp CSCHHHHHHHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSSCCCCCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccceeeccccceeeecceEEEEehhhhccCCCcchhhhhhhhHHHHHHHHHHhhcCchHHHHHH
Confidence 57999999999999999999999999999999999999999888777888777788889999999999998888888777
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhh
Q psy11552 246 LRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGV 325 (714)
Q Consensus 246 lr~~~k~l~~r~l~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~ 325 (714)
+.++ +..++.++++.+.+.|.++++|.+|+++++..|+..
T Consensus 320 l~~~----------------------------------------~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~ 359 (469)
T 1o7f_A 320 LRKP----------------------------------------PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV 359 (469)
T ss_dssp TTSC----------------------------------------TTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHH
T ss_pred HcCC----------------------------------------chhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHH
Confidence 7664 899999999999999999999999999999999995
Q ss_pred cceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhhhccCCCcceeeec
Q psy11552 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 326 ~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
+....+|++|++|+++||+++++|||++|.|.++..+.+.+..+++|++|||++++.+.||++|++|
T Consensus 360 ~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a 426 (469)
T 1o7f_A 360 LIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVL 426 (469)
T ss_dssp CEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCSCCSSEEEE
T ss_pred hheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcCCCceEEEEE
Confidence 4445589999999999999999999999999999877778999999999999999999999999998
No 8
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.88 E-value=4.1e-22 Score=210.17 Aligned_cols=183 Identities=22% Similarity=0.338 Sum_probs=161.2
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc
Q psy11552 284 ERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK 363 (714)
Q Consensus 284 ~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~ 363 (714)
.....|+.+++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++|+++||.++.+|||++|.|.+...+.
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~ 98 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVD-CMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV 98 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHH-HCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTE
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHH-hcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCE
Confidence 34457889999999999999999999999999999999999 66777999999999999999999999999999977664
Q ss_pred eEEEEecCCCccchhhhccCCCcceeeec---------------------------------------------------
Q psy11552 364 GCVTSLYAGEDFGKLALVNNAPRLIITSM--------------------------------------------------- 392 (714)
Q Consensus 364 ~~v~~l~~Gd~FGElaLl~~~pr~atv~A--------------------------------------------------- 392 (714)
.+..+++|++|||++++.+.||++|++|
T Consensus 99 -~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~ 177 (299)
T 3shr_A 99 -KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLA 177 (299)
T ss_dssp -EEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHT
T ss_pred -EEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHH
Confidence 8999999999999999999999999998
Q ss_pred -------------ccccCCCCceEEEEEeCeEEEEeec-----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhhee
Q psy11552 393 -------------VFHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVY 454 (714)
Q Consensus 393 -------------i~~~g~~~~~~YiI~~G~~~~~~~~-----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly 454 (714)
|+++|+.++.+|+|++|.+++.... ...+..+++||+|||.+++.+.|+.
T Consensus 178 ~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~------------ 245 (299)
T 3shr_A 178 DVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRT------------ 245 (299)
T ss_dssp TTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECS------------
T ss_pred HhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcc------------
Confidence 8899999999999999999998754 2456789999999999999988887
Q ss_pred eeeccccccCCceeeeecCCccccccchh
Q psy11552 455 FTTTAPDIKGPRRYKFRGPNRFQQITANL 483 (714)
Q Consensus 455 ~~itv~ei~~p~~~~~l~r~~f~~~tpnI 483 (714)
+++.+ .+++.++.+++..|.......
T Consensus 246 --~tv~a-~~~~~l~~i~~~~f~~ll~~~ 271 (299)
T 3shr_A 246 --ANVIA-AEAVTCLVIDRDSFKHLIGGL 271 (299)
T ss_dssp --SEEEE-SSSEEEEEEEHHHHHHHHTTC
T ss_pred --eEEEE-CCCEEEEEEeHHHHHHHHccH
Confidence 77777 677788888887776544433
No 9
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-22 Score=205.32 Aligned_cols=174 Identities=27% Similarity=0.474 Sum_probs=156.0
Q ss_pred HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchh
Q psy11552 299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 378 (714)
Q Consensus 299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEl 378 (714)
+.+.+.|.++++|++|+++++..|+. .+....+++|++|+++||+++++|+|++|.|.++..+. .+..+++|++|||+
T Consensus 3 ~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~-~~~~~~~g~~fGe~ 80 (246)
T 3of1_A 3 QRLEKSIRNNFLFNKLDSDSKRLVIN-CLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHHHTCTTTTTSCHHHHHHHHT-TCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTS-CCEEECTTCEECHH
T ss_pred HHHHHHHhcCHhhHhCCHHHHHHHHH-hhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCE-EEEecCCCCeeehh
Confidence 46788999999999999999999999 66787999999999999999999999999999987655 68999999999999
Q ss_pred hhccCCCcceeeec----------------------------------------------------------------cc
Q psy11552 379 ALVNNAPRLIITSM----------------------------------------------------------------VF 394 (714)
Q Consensus 379 aLl~~~pr~atv~A----------------------------------------------------------------i~ 394 (714)
+++.+.||++|++| |+
T Consensus 81 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~ 160 (246)
T 3of1_A 81 ALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETII 160 (246)
T ss_dssp HHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEE
T ss_pred HHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEE
Confidence 99999999999997 78
Q ss_pred ccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeecCC
Q psy11552 395 HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPN 474 (714)
Q Consensus 395 ~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~r~ 474 (714)
++|++++.+|+|.+|.+++.......+..+++||+|||.+++.+.|+. +++.+ .+++.++.++++
T Consensus 161 ~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~--------------~~v~a-~~~~~~~~i~~~ 225 (246)
T 3of1_A 161 REGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQ--------------ATVTA-TKRTKVATLGKS 225 (246)
T ss_dssp CTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCS--------------SEEEE-SSCEEEEEEEHH
T ss_pred eCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcc--------------cEEEE-CCCEEEEEEeHH
Confidence 999999999999999999998776677899999999999999998887 77877 577888899999
Q ss_pred ccccccchhhhhhhh
Q psy11552 475 RFQQITANLDVFLRR 489 (714)
Q Consensus 475 ~f~~~tpnI~~~i~~ 489 (714)
.|.........++++
T Consensus 226 ~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 226 GFQRLLGPAVDVLKL 240 (246)
T ss_dssp HHHHHCTTHHHHHHH
T ss_pred HHHHHhccHHHHHhc
Confidence 888877766655543
No 10
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=219.15 Aligned_cols=186 Identities=27% Similarity=0.475 Sum_probs=165.8
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce
Q psy11552 285 RQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG 364 (714)
Q Consensus 285 ~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~ 364 (714)
....+..+++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++|+++||+++++|+|++|.|+++..+.
T Consensus 112 ~~~~~~~~ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~-~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~- 189 (381)
T 4din_B 112 SYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFD-AMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE- 189 (381)
T ss_dssp TCCCCCCCCCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHH-HCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTE-
T ss_pred cccCCCCCCCHHHHHHHHHHHhCChhhhcCCHHHHHHHHH-hceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCe-
Confidence 4456788899999999999999999999999999999999 67888999999999999999999999999999998654
Q ss_pred EEEEecCCCccchhhhccCCCcceeeec----------------------------------------------------
Q psy11552 365 CVTSLYAGEDFGKLALVNNAPRLIITSM---------------------------------------------------- 392 (714)
Q Consensus 365 ~v~~l~~Gd~FGElaLl~~~pr~atv~A---------------------------------------------------- 392 (714)
.+..+++|++|||++++.+.||++|++|
T Consensus 190 ~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~ 269 (381)
T 4din_B 190 WVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVAD 269 (381)
T ss_dssp EEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHT
T ss_pred EeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHH
Confidence 8899999999999999999999999998
Q ss_pred ------------ccccCCCCceEEEEEeCeEEEEeec-----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheee
Q psy11552 393 ------------VFHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYF 455 (714)
Q Consensus 393 ------------i~~~g~~~~~~YiI~~G~~~~~~~~-----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~ 455 (714)
|+++|+.++++|+|.+|.+++.... ...+..+++|++|||.+++.+.|+.
T Consensus 270 ~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~------------- 336 (381)
T 4din_B 270 ALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRA------------- 336 (381)
T ss_dssp TCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCS-------------
T ss_pred hhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCce-------------
Confidence 8899999999999999999998843 2346789999999999999999887
Q ss_pred eeccccccCCceeeeecCCccccccchhhhhh
Q psy11552 456 TTTAPDIKGPRRYKFRGPNRFQQITANLDVFL 487 (714)
Q Consensus 456 ~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i 487 (714)
+++.+ .+++.++.+++..|.....+...++
T Consensus 337 -~tv~A-~~~~~ll~i~~~~f~~ll~~~~~i~ 366 (381)
T 4din_B 337 -ATVVA-RGPLKCVKLDRPRFERVLGPCSEIL 366 (381)
T ss_dssp -SEEEE-SSCBEEEEEEHHHHHHHHCCHHHHH
T ss_pred -eEEEE-cCCEEEEEEeHHHHHHHHhhhHHHH
Confidence 78887 6678888999988887666554443
No 11
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.87 E-value=1.1e-21 Score=240.31 Aligned_cols=108 Identities=29% Similarity=0.511 Sum_probs=97.5
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEe
Q psy11552 282 EEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361 (714)
Q Consensus 282 ~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~ 361 (714)
....+.++|.+|+.+|++.|+..|+++++|++|++.++.+|+. .|....+++|++||+|||.|++||||++|+|.|+..
T Consensus 21 ~i~~L~K~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~-~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~ 99 (999)
T 4f7z_A 21 WIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICL-CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVS 99 (999)
T ss_dssp HHHHHHSCSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEC
T ss_pred HHHHhcCCcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHh-heEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEe
Confidence 3456678899999999999999999999999999999999999 677779999999999999999999999999999885
Q ss_pred Cc------eEEEEecCCCccchhhhccCCCcceeee
Q psy11552 362 GK------GCVTSLYAGEDFGKLALVNNAPRLIITS 391 (714)
Q Consensus 362 ~~------~~v~~l~~Gd~FGElaLl~~~pr~atv~ 391 (714)
+. ..+..+++|+.||| +++++.||+|||+
T Consensus 100 ~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~ 134 (999)
T 4f7z_A 100 ETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIV 134 (999)
T ss_dssp SSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEE
T ss_pred cCCCCCCceeEEEecCCcchhh-hhccCCCcceEEE
Confidence 32 17899999999999 8999999988743
No 12
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.86 E-value=1e-21 Score=217.70 Aligned_cols=185 Identities=24% Similarity=0.430 Sum_probs=161.1
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce--
Q psy11552 287 IGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG-- 364 (714)
Q Consensus 287 ~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~-- 364 (714)
..+..+++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++||++||.++++|||++|.|+|+....|
T Consensus 129 ~~~~~~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~-~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~ 207 (416)
T 3tnp_B 129 SRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD-AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG 207 (416)
T ss_dssp -CCCCCCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCE
T ss_pred cccCCCCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHH-hcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCE
Confidence 45567899999999999999999999999999999999 677889999999999999999999999999999885443
Q ss_pred -EEEEecCCCccchhhhccCCCcceeeec---------------------------------------------------
Q psy11552 365 -CVTSLYAGEDFGKLALVNNAPRLIITSM--------------------------------------------------- 392 (714)
Q Consensus 365 -~v~~l~~Gd~FGElaLl~~~pr~atv~A--------------------------------------------------- 392 (714)
.+..+++|++|||++++.+.||++|++|
T Consensus 208 ~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~ 287 (416)
T 3tnp_B 208 RCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVV 287 (416)
T ss_dssp EEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHH
T ss_pred EEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHH
Confidence 6889999999999999999999999997
Q ss_pred -------------ccccCCCCceEEEEEeCeEEEEeec----------ceeeeeecCCCccchhhhhcCCchhHHHHHHh
Q psy11552 393 -------------VFHQGDEGKSWYIIIQGSVDVVIYG----------KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLE 449 (714)
Q Consensus 393 -------------i~~~g~~~~~~YiI~~G~~~~~~~~----------~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~ 449 (714)
|+++|+.++.+|+|++|.+++.... ...+..+++|++|||.+++.+.|+.
T Consensus 288 ~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~~~r~------- 360 (416)
T 3tnp_B 288 DVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRA------- 360 (416)
T ss_dssp HHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCCSCCS-------
T ss_pred hhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCCCCce-------
Confidence 8899999999999999999998743 2346789999999999999998887
Q ss_pred hhheeeeeccccccCCceeeeecCCccccccchhhhhh
Q psy11552 450 QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFL 487 (714)
Q Consensus 450 ~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i 487 (714)
+++.+ .+++.++.+++..|.........+.
T Consensus 361 -------~tv~A-~~~~~ll~I~~~~f~~ll~~~p~i~ 390 (416)
T 3tnp_B 361 -------ASAHA-IGTVKCLAMDVQAFERLLGPCMEIM 390 (416)
T ss_dssp -------SEEEE-EEEEEEEEEEHHHHHHHHCCHHHHH
T ss_pred -------eEEEE-cCCeEEEEEEHHHHHHHhcchHHHH
Confidence 67777 5667788888888877666554443
No 13
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.86 E-value=1.5e-21 Score=204.74 Aligned_cols=183 Identities=27% Similarity=0.451 Sum_probs=161.1
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc
Q psy11552 284 ERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK 363 (714)
Q Consensus 284 ~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~ 363 (714)
..+..|..+++.++.+.+.+.|.++++|++|+++++..|+. .+....+++|++|+++||+++.+|+|++|.|.++..+
T Consensus 20 ~~~~~~~~~ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g- 97 (291)
T 2qcs_B 20 ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFD-AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN- 97 (291)
T ss_dssp HTCCCCCCCCCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETT-
T ss_pred cccCCCCCCCCHHHHHHHHHHHhcChhhhhCCHHHHHHHHH-hccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECC-
Confidence 34567889999999999999999999999999999999999 5677799999999999999999999999999999855
Q ss_pred eEEEEecCCCccchhhhccCCCcceeeec---------------------------------------------------
Q psy11552 364 GCVTSLYAGEDFGKLALVNNAPRLIITSM--------------------------------------------------- 392 (714)
Q Consensus 364 ~~v~~l~~Gd~FGElaLl~~~pr~atv~A--------------------------------------------------- 392 (714)
..+..+++|++|||.+++.+.||++|++|
T Consensus 98 ~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~ 177 (291)
T 2qcs_B 98 EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVA 177 (291)
T ss_dssp EEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHH
T ss_pred eEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHH
Confidence 48999999999999999999999999997
Q ss_pred -------------ccccCCCCceEEEEEeCeEEEEeec-----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhhee
Q psy11552 393 -------------VFHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVY 454 (714)
Q Consensus 393 -------------i~~~g~~~~~~YiI~~G~~~~~~~~-----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly 454 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|++|||.+++.+.|+.
T Consensus 178 ~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~------------ 245 (291)
T 2qcs_B 178 DALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKA------------ 245 (291)
T ss_dssp HHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCS------------
T ss_pred hhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcc------------
Confidence 7899999999999999999998632 2457789999999999999998887
Q ss_pred eeeccccccCCceeeeecCCccccccchh
Q psy11552 455 FTTTAPDIKGPRRYKFRGPNRFQQITANL 483 (714)
Q Consensus 455 ~~itv~ei~~p~~~~~l~r~~f~~~tpnI 483 (714)
+++.+ .+++.++.++++.|.......
T Consensus 246 --~tv~a-~~~~~~~~i~~~~f~~~l~~~ 271 (291)
T 2qcs_B 246 --ATVVA-RGPLKCVKLDRPRFERVLGPC 271 (291)
T ss_dssp --SEEEE-EEEEEEEEEEHHHHHHHHCCH
T ss_pred --eEEEE-CCcEEEEEEcHHHHHHHhccH
Confidence 67776 556777888888776554443
No 14
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-21 Score=169.55 Aligned_cols=72 Identities=29% Similarity=0.460 Sum_probs=67.0
Q ss_pred CCCccccccccCCccccccccchhhHHHHHHhh-------CCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCc
Q psy11552 56 ESGTLRDRKTSGGRTIARRCASGSELVDWLMSL-------APSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETI 128 (714)
Q Consensus 56 ~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~-------~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~ 128 (714)
.+..|||||+++ |+|++||+|+||||||+++ +.
T Consensus 23 ~g~~ikdrr~~l--k~y~~CF~GsE~VdWL~~~l~~~~~fg~-------------------------------------- 62 (105)
T 2ysr_A 23 AGMPLRKHRQHF--KKYGNCFTAGEAVDWLYDLLRNNSNFGP-------------------------------------- 62 (105)
T ss_dssp HSCSCCCCCCSS--SSCSSCEEHHHHHHHHHHHHHHSSSSTT--------------------------------------
T ss_pred cCCCcceeeeCC--EECCccccchHHHHHHHHhcccccccCc--------------------------------------
Confidence 457999999999 9999999999999999998 55
Q ss_pred hhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCc---cccCcCceeeec
Q psy11552 129 PMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQ---AFRDKCILYNFW 204 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~---~F~d~~~~Yrf~ 204 (714)
+.+|+||+.+||+||+.|+|+||.++| .|+|++.||||.
T Consensus 63 -------------------------------------~~sR~eAv~lgq~Ll~~gvi~hV~~~~~~~~F~D~~~lYrF~ 104 (105)
T 2ysr_A 63 -------------------------------------EVTRQQTIQLLRKFLKNHVIEDIKGRWGSENVDDNNQLFRFP 104 (105)
T ss_dssp -------------------------------------TCCHHHHHHHHHHHHHTTSSEESSCCCSCSCCCSSSCEEECC
T ss_pred -------------------------------------cCCHHHHHHHHHHHHHCCCeEeccCccCcccccCCCeeEEec
Confidence 689999999999999999999999887 899999999996
No 15
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=99.80 E-value=6.1e-20 Score=162.11 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=72.8
Q ss_pred HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552 46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE 124 (714)
Q Consensus 46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~ 124 (714)
+.|...|.+.. +..+++|++++ ++|++||+|+|+||||++++.
T Consensus 9 ~~Lv~~Mqd~~~Gv~~~~r~~~~--~~~~~cF~GselVdWLi~~~~---------------------------------- 52 (109)
T 1uhw_A 9 GALYLSMKDPEKGIKELNLEKDK--KVFNHCLTGSGVIDWLVSNKL---------------------------------- 52 (109)
T ss_dssp HHHHHHHHCTTTSCCCEEEESSS--CEEEEECCHHHHHHHHHHHTS----------------------------------
T ss_pred HHHHHHHhCCCCCceeeeeEECC--EEccccccchHHHHHHHHcCC----------------------------------
Confidence 45556666654 55589999999 999999999999999999886
Q ss_pred CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCC----------Cccc
Q psy11552 125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNG----------EQAF 194 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~----------~~~F 194 (714)
+.+|+||+.+||.|+++|+|+||.+ +|+|
T Consensus 53 -----------------------------------------~~~R~EAv~lgq~Ll~~G~i~hV~d~~~~~~~~~~~~~F 91 (109)
T 1uhw_A 53 -----------------------------------------VRNRQEGLMISASLLSEGYLQPAGDLSKNAADGIAENPF 91 (109)
T ss_dssp -----------------------------------------SSSHHHHHHHHHHHHHHTSSEECSSSHHHHHHHSSSCCC
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHCCeEEeCccccccccccccccce
Confidence 6899999999999999999999954 8999
Q ss_pred cCc-CceeeeccCc
Q psy11552 195 RDK-CILYNFWQDK 207 (714)
Q Consensus 195 ~d~-~~~Yrf~~d~ 207 (714)
.|+ ++||||..+-
T Consensus 92 ~D~~~~lYrF~~~~ 105 (109)
T 1uhw_A 92 LDSPDAFYYFPDSG 105 (109)
T ss_dssp CCCSSCCEECTTSS
T ss_pred ecCCCcEEEEcCCC
Confidence 987 6999998764
No 16
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=99.80 E-value=1e-19 Score=165.11 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=76.9
Q ss_pred HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552 46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE 124 (714)
Q Consensus 46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~ 124 (714)
..|...|.... +..++||++++ ++|++||+|+|+||||++++.
T Consensus 9 ~~L~~~m~~~~~Gv~i~~rr~~~--k~y~~cF~GsdlVdWL~~~~~---------------------------------- 52 (120)
T 1v3f_A 9 HRIVDKMHDTSTGIRPSPNMEQG--STYKKTFLGSSLVDWLISSNF---------------------------------- 52 (120)
T ss_dssp HHHHHHHTCSSSSCCCCCCCSSS--SCCSSCEEHHHHHHHHHHTTS----------------------------------
T ss_pred HHHHHHHhCccCCCeeeeeEEcc--EEccceeehHHHHHHHHHcCC----------------------------------
Confidence 45666666655 44489999999 999999999999999999887
Q ss_pred CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecC-----------CCcc
Q psy11552 125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN-----------GEQA 193 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~-----------~~~~ 193 (714)
+.+|.||+.+||+||++|+|+||. +++.
T Consensus 53 -----------------------------------------~~sR~eAv~lgq~Ll~~G~i~hV~~~s~~~~~~~~~~~~ 91 (120)
T 1v3f_A 53 -----------------------------------------AASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQ 91 (120)
T ss_dssp -----------------------------------------CSSHHHHHHHHHHHHHHTSEEECSSSSCSSCCCSSCCCC
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHCCCeEEccccccccccccccccc
Confidence 689999999999999999999998 7899
Q ss_pred ccCcC-ceeeeccCccCCCC
Q psy11552 194 FRDKC-ILYNFWQDKEGSSS 212 (714)
Q Consensus 194 F~d~~-~~Yrf~~d~~~~~~ 212 (714)
|.|+. .||||..++++..+
T Consensus 92 f~d~~~~lYrF~~~~~~~~s 111 (120)
T 1v3f_A 92 FLDDSTALYTFAESYKKKVS 111 (120)
T ss_dssp CCCSSSCEEEECSSSCCCCC
T ss_pred eecCCccEEEeChhhccCCC
Confidence 99986 99999988665433
No 17
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=99.76 E-value=4.7e-19 Score=157.11 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=71.1
Q ss_pred HHHHHHhhcC-CCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552 46 WVLRTLLLND-ESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE 124 (714)
Q Consensus 46 ~~l~~~~~~~-~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~ 124 (714)
+.+...|... .+..|+||++++ ++|++||+|+|+||||+++.+.
T Consensus 22 ~~iv~~M~~p~~Gv~i~dr~~~~--~~~~~~F~G~dlVdWL~~~~~~--------------------------------- 66 (105)
T 1fsh_A 22 SAIVRVMQLPDSGLEIRDRMWLK--ITIANAVIGADVVDWLYTHVEG--------------------------------- 66 (105)
T ss_dssp HHHHHHHHSTTSSSCSSCEEETT--EEESSCCHHHHHHHHHHHHCCC---------------------------------
T ss_pred HHHHHHHhCCCCCceeEEeEeCC--EECCceeEcHHHHHHHHHhCcC---------------------------------
Confidence 4444555554 477899999999 9999999999999999999864
Q ss_pred CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeec
Q psy11552 125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFW 204 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~ 204 (714)
+.+|.||+.+||.|++.|+|+||.++|.|+|+ .||+|.
T Consensus 67 -----------------------------------------~~~r~eAv~lg~~Ll~~G~I~hv~~~~~F~D~-~~y~f~ 104 (105)
T 1fsh_A 67 -----------------------------------------FKERREARKYASSMLKHGFLRHTVNKITFSEQ-CYYVFG 104 (105)
T ss_dssp -----------------------------------------CSSHHHHHHHHHHHHHTTTEECSSSSCCCCSS-SCCEEC
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHCCcEEEcCCCCcccCC-CeeecC
Confidence 58999999999999999999999999999997 469995
No 18
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.75 E-value=1.6e-17 Score=186.32 Aligned_cols=108 Identities=29% Similarity=0.501 Sum_probs=96.0
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC
Q psy11552 283 EERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG 362 (714)
Q Consensus 283 ~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~ 362 (714)
...+.+|+..++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++||++||+++++|+|++|.|.++...
T Consensus 22 ~~~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~ 100 (469)
T 1o7f_A 22 IACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICL-CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSE 100 (469)
T ss_dssp HHHHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECS
T ss_pred HHHhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHH-hceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEec
Confidence 344678999999999999999999999999999999999999 5677799999999999999999999999999998853
Q ss_pred c------eEEEEecCCCccchhhhccCCCcceeeec
Q psy11552 363 K------GCVTSLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 363 ~------~~v~~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
. ..+..+++|++|||++ +.+.||++|++|
T Consensus 101 ~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A 135 (469)
T 1o7f_A 101 TSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVT 135 (469)
T ss_dssp SSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEE
T ss_pred CCCCCcceEEEEccCCCCcchhh-hCCCCccceEEE
Confidence 2 2788999999999999 888888665554
No 19
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=99.74 E-value=2.2e-18 Score=156.31 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=72.5
Q ss_pred HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552 46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE 124 (714)
Q Consensus 46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~ 124 (714)
+.|...|.+.. +..+++|++++ ++|++||+|+|+||||++++.
T Consensus 19 ~~Lv~~Mqd~~~GV~~~~r~~~~--~~~~~cF~GsdlVdWLl~~~~---------------------------------- 62 (127)
T 2cso_A 19 GALYLSMKDTEKGIKELNLEKDK--KIFNHCFTGNCVIDWLVSNQS---------------------------------- 62 (127)
T ss_dssp HHHHHHHHSSSSSCCCEEEEETT--EEEEEEEEHHHHHHHHHHTTS----------------------------------
T ss_pred HHHHHHHhCCCCCceeeeEEecc--EEecceeechHHHHHHHHcCC----------------------------------
Confidence 45556666654 55589999999 999999999999999999876
Q ss_pred CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceec----------CCCccc
Q psy11552 125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHV----------NGEQAF 194 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv----------~~~~~F 194 (714)
+.+|+||+.+||.|+++|+|+|| ++++.|
T Consensus 63 -----------------------------------------~~sR~EAv~lg~~Ll~~G~i~hV~d~s~~~~~~~~~~~f 101 (127)
T 2cso_A 63 -----------------------------------------VRNRQEGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPF 101 (127)
T ss_dssp -----------------------------------------CSSHHHHHHHHHHHHHHTSSEEESHHHHHHHHSSCSCCC
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHCCeEEeCccccccccccccccce
Confidence 68999999999999999999999 678899
Q ss_pred cCc-CceeeeccC
Q psy11552 195 RDK-CILYNFWQD 206 (714)
Q Consensus 195 ~d~-~~~Yrf~~d 206 (714)
.|+ +.||||..+
T Consensus 102 ~dd~~~lYrF~~~ 114 (127)
T 2cso_A 102 LDNPDAFYYFPDS 114 (127)
T ss_dssp CCCTTCEEECSSS
T ss_pred ecCCCcEEEecCC
Confidence 876 699999876
No 20
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=99.57 E-value=2.8e-15 Score=163.00 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=73.0
Q ss_pred HHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCC
Q psy11552 47 VLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSET 125 (714)
Q Consensus 47 ~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~ 125 (714)
.+...|.+.+ +..|+||++|+ ++|++||+|+|+||||+++...
T Consensus 11 ~i~~~M~~~~~Gl~i~dr~~~~--~~~~~~F~G~elVdWL~~~~~~---------------------------------- 54 (385)
T 3ml6_A 11 SVTKAMAAPESGLEVRDRMWLK--ITIPNAFLGSDVVDWLYHHVEG---------------------------------- 54 (385)
T ss_dssp HHHHHHHSTTSSSCCEEECCSS--CCEEEEEEHHHHHHHHHHTCCS----------------------------------
T ss_pred HHHHHhhCCCCCceeEeeEECc--EECCCeEEhHHHHHHHHHccCC----------------------------------
Confidence 3445565655 66799999999 9999999999999999999764
Q ss_pred CCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeecc
Q psy11552 126 ETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~~ 205 (714)
+.+|+||+.+||.|+++|+|+||.++|.|+|++ +|+|.+
T Consensus 55 ----------------------------------------~~~R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~-~y~f~~ 93 (385)
T 3ml6_A 55 ----------------------------------------FPERREARKYASGLLKAGLIRHTVNKITFSEQC-YYVFGD 93 (385)
T ss_dssp ----------------------------------------CSSHHHHHHHHHHHHHHSSEEESSSCSSCCSSS-EEEECC
T ss_pred ----------------------------------------CCCHHHHHHHHHHHHhCCcEEEcCCcceecCcc-eEEeec
Confidence 689999999999999999999999999999986 699976
Q ss_pred Cc
Q psy11552 206 DK 207 (714)
Q Consensus 206 d~ 207 (714)
..
T Consensus 94 ~~ 95 (385)
T 3ml6_A 94 LS 95 (385)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 21
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.55 E-value=8.4e-15 Score=151.14 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=91.4
Q ss_pred hhhhhhhhHHHhHhhhhccccC-hhhHHHHHHHHHHHHHHHh-hcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHH
Q psy11552 485 VFLRRFNEIQYWVITEILLVTS-LNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKT 562 (714)
Q Consensus 485 ~~i~~fn~ls~wV~~~Il~~~~-~~~R~~~i~~fI~iA~~~~-~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~ 562 (714)
.+++|||.+++||+.+||.|.. .++|+.++++||+||.+|+ .++|+++++||+.||+++.|+||.+||+.+++++.+.
T Consensus 97 dlleR~~~l~~wva~~IL~C~~~~~eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~ 176 (333)
T 3t6a_A 97 DIIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQT 176 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHH
T ss_pred HHHHHhcccHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHH
Confidence 5799999999999999999864 7899999999999999999 9999999999999999999999999999999999997
Q ss_pred HHHHHhccCCCCchHHHHHHHHhCC----CCccccccchhh
Q psy11552 563 YTELEALIDPSKNHRAYRQAVSKLQ----SPVIPFMPLLLK 599 (714)
Q Consensus 563 ~~~l~~l~~~~~n~~~yR~~l~~~~----~p~IPflg~~L~ 599 (714)
.-.+++.+.|. .+.+.+--.... .-|+|++-.+++
T Consensus 177 ai~yEk~LkP~--~k~lneG~~~~~~~~~~~t~Phv~Pl~~ 215 (333)
T 3t6a_A 177 AILYEKQLKPF--SKLLHEGRESTCVPPNNVSVPLLMPLVT 215 (333)
T ss_dssp HHHHHHTHHHH--HHHHHTTCGGGSCCTTCCSBCCCHHHHH
T ss_pred HHHHHHHhhHH--HHHhhCCCCCCCCCCCCccchhHHHHHH
Confidence 77777765552 122222111111 247888865543
No 22
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.50 E-value=1e-13 Score=128.58 Aligned_cols=104 Identities=22% Similarity=0.327 Sum_probs=96.8
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEE
Q psy11552 287 IGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCV 366 (714)
Q Consensus 287 ~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v 366 (714)
..|+..++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|++...+. .+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~-~~ 84 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVD-CMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV-KL 84 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHH-HCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTE-EE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHH-hcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCE-EE
Confidence 45678899999999999999999999999999999999 56777999999999999999999999999999977554 89
Q ss_pred EEecCCCccchhhhccCCCcceeeec
Q psy11552 367 TSLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 367 ~~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
..+++|++|||++++.+.|+.++++|
T Consensus 85 ~~~~~G~~fGe~~~l~~~~~~~~~~a 110 (139)
T 3ocp_A 85 CTMGPGKVFGELAILYNCTRTATVKT 110 (139)
T ss_dssp EEECTTCEESCHHHHHCCCCSSEEEE
T ss_pred EEeCCCCEeccHHHHCCCCcceEEEE
Confidence 99999999999999999999999998
No 23
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.47 E-value=1.7e-13 Score=130.51 Aligned_cols=105 Identities=26% Similarity=0.458 Sum_probs=95.0
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce--
Q psy11552 287 IGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG-- 364 (714)
Q Consensus 287 ~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~-- 364 (714)
..+..+++.++.+.+.+.|.++++|.+|+++++..|+. .+....|++|++|+++|++++++|+|++|.|.++...+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~ 100 (161)
T 3idb_B 22 SRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD-AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG 100 (161)
T ss_dssp --CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEE
T ss_pred CcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHH-hcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCe
Confidence 34567889999999999999999999999999999999 567779999999999999999999999999999874333
Q ss_pred -EEEEecCCCccchhhhccCCCcceeeec
Q psy11552 365 -CVTSLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 365 -~v~~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
.+..+++|++|||++++.+.|++++++|
T Consensus 101 ~~~~~~~~G~~fGe~~~~~~~~~~~~v~A 129 (161)
T 3idb_B 101 RCVGNYDNRGSFGELALMYNTPRAATITA 129 (161)
T ss_dssp EEEEEEESCCEECGGGGTCCCCCSSEEEE
T ss_pred EEEEEcCCCCEechHHHHcCCCcccEEEE
Confidence 7888999999999999999999999998
No 24
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.46 E-value=2.6e-13 Score=128.34 Aligned_cols=106 Identities=27% Similarity=0.471 Sum_probs=96.7
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce
Q psy11552 285 RQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG 364 (714)
Q Consensus 285 ~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~ 364 (714)
....+..+++.++.+.+.+.|.++++|.+|+++++..|+. .+....+++|++|+++|++++++|+|++|.|.++..+.
T Consensus 20 ~~~~~~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~- 97 (154)
T 3pna_A 20 SYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFD-AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE- 97 (154)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTE-
T ss_pred ccccccCCCCHHHHHHHHHHHHhChhhhhCCHHHHHHHHH-hceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCE-
Confidence 4556677889999999999999999999999999999999 56777999999999999999999999999999998554
Q ss_pred EEEEecCCCccchhhhccCCCcceeeec
Q psy11552 365 CVTSLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 365 ~v~~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
.+..+++|++||+.+++.+.|+.++++|
T Consensus 98 ~~~~~~~G~~fGe~~~~~~~~~~~~v~A 125 (154)
T 3pna_A 98 WATSVGEGGSFGELALIYGTPRAATVKA 125 (154)
T ss_dssp EEEEECTTCEECCHHHHHCCCCSSEEEE
T ss_pred EEEEecCCCEeeehHhhcCCCcceEEEE
Confidence 8899999999999999999999999998
No 25
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.45 E-value=7.4e-14 Score=128.76 Aligned_cols=103 Identities=30% Similarity=0.509 Sum_probs=94.1
Q ss_pred CCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeec-CCCEEEccCCcCCeEEEEEEeEEEEEEeCceEE
Q psy11552 288 GKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPR-KGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCV 366 (714)
Q Consensus 288 ~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~-~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v 366 (714)
.||..|+.+++..+.+.|.++++|..|+++++..|+. .+....++ +|++|+++|++++.+|||++|.|.++..+ |..
T Consensus 1 ~~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-g~~ 78 (134)
T 2d93_A 1 GSSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCS-VMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPD-GKV 78 (134)
T ss_dssp CCCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTT-TEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSS-SCE
T ss_pred CChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHH-hheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCC-CcE
Confidence 3789999999999999999999999999999999999 56777999 99999999999999999999999998643 344
Q ss_pred EEecCCCccchhhhccCCCcceee-ec
Q psy11552 367 TSLYAGEDFGKLALVNNAPRLIIT-SM 392 (714)
Q Consensus 367 ~~l~~Gd~FGElaLl~~~pr~atv-~A 392 (714)
..+++|++||+.+++.+.|+.+++ +|
T Consensus 79 ~~l~~G~~fG~~~~~~~~~~~~~~~~a 105 (134)
T 2d93_A 79 ENLFMGNSFGITPTLDKQYMHGIVRTK 105 (134)
T ss_dssp EEECTTCEESCCSSSCCEECCSEEEES
T ss_pred EEecCCCccChhHhcCCCcceeEEEEE
Confidence 889999999999999999998888 77
No 26
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=141.16 Aligned_cols=109 Identities=26% Similarity=0.386 Sum_probs=94.0
Q ss_pred hhhhhhhhHHHhHhhhhcccc-ChhhHHHHHHHHHHHHHHHh-hcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHH
Q psy11552 485 VFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKT 562 (714)
Q Consensus 485 ~~i~~fn~ls~wV~~~Il~~~-~~~~R~~~i~~fI~iA~~~~-~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~ 562 (714)
.+++|||.+++||+.+||.|. +..+|+.++++||+||.+|+ .++|+++++||+.||+++.|.||.+||..+++++.+.
T Consensus 98 dlleR~~~l~~~va~~IL~c~g~~~~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~ 177 (331)
T 3t6g_A 98 DLLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEG 177 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHH
T ss_pred HHHHHhcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHH
Confidence 579999999999999999997 89999999999999999999 9999999999999999999999999999999999998
Q ss_pred HHHHHhccCCCCchHHHHHHHHhCC------CCccccccchhh
Q psy11552 563 YTELEALIDPSKNHRAYRQAVSKLQ------SPVIPFMPLLLK 599 (714)
Q Consensus 563 ~~~l~~l~~~~~n~~~yR~~l~~~~------~p~IPflg~~L~ 599 (714)
+-.+++.+.| ..+.+.+.+ ..|||++..+++
T Consensus 178 Ai~yEk~LkP------~~k~lneg~~~~~~~~~~~Phl~Pl~~ 214 (331)
T 3t6g_A 178 AILYEKKLKP------FLKSLNEGKEGPPLSNTTFPHVLPLIT 214 (331)
T ss_dssp HHHHHHTHHH------HHHHHHTTCCCSCGGGCSBCCCHHHHH
T ss_pred HHHHHHHhhH------HHHHHhCCCCCCCCCCCccchHHHHHH
Confidence 7777776544 233344433 138999876654
No 27
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.39 E-value=5e-13 Score=146.17 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=81.4
Q ss_pred CcHHHHHHHHHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhccccccc
Q psy11552 37 PSVPMARAGWVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHG 115 (714)
Q Consensus 37 ~~~~~~~~~~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv 115 (714)
+...+....+.+...|.+.+ |..|+||++++ ++|++||+|+|+|+||+++..
T Consensus 14 ~~~~~~~~~e~lv~~M~~~~~Gv~i~~~~~~~--~~~p~~F~Gsd~V~WL~~~~~------------------------- 66 (424)
T 2pbi_A 14 PRMAFLQKIEALVKDMQNPETGVRMHNQRVLV--TSVPHAMTGGDVLQWITQRLW------------------------- 66 (424)
T ss_dssp CCCTHHHHHHHHHHHHTCTTTSCCCCCCSSCC--CSSCCCEEHHHHHHHHHHHHT-------------------------
T ss_pred CcchhhhhHHHHHHHHhCCCCCCCccceeecc--eeCCCccccHHHHHHHHHcCC-------------------------
Confidence 44556688888888887766 77899999999 999999999999999999876
Q ss_pred ceeeEeecCCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCcc--
Q psy11552 116 KISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQA-- 193 (714)
Q Consensus 116 ~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~-- 193 (714)
+ +++||+.+|+.|+++|+|+||.+.|.
T Consensus 67 --------------------------------------------------~-~~~EA~~lg~~L~~~Gyi~~v~d~~~~~ 95 (424)
T 2pbi_A 67 --------------------------------------------------I-SNLEAQNLGNFIVKYGYIYPLQDPKNLI 95 (424)
T ss_dssp --------------------------------------------------C-CHHHHHHHHHHHHHTTSEEESSSTTCCS
T ss_pred --------------------------------------------------C-ChHHHHHHHHHHHHCCCEEeCCcccccc
Confidence 3 66999999999999999999988775
Q ss_pred ccCcCceeeeccCcc
Q psy11552 194 FRDKCILYNFWQDKE 208 (714)
Q Consensus 194 F~d~~~~Yrf~~d~~ 208 (714)
|+|++.||||..++.
T Consensus 96 fk~d~~~Yrfq~py~ 110 (424)
T 2pbi_A 96 LKPDSSLYRFQTPYF 110 (424)
T ss_dssp CCSSSCEEEECCGGG
T ss_pred ccCCCeeEEeCCccc
Confidence 999999999987654
No 28
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.36 E-value=1.4e-12 Score=128.63 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccch
Q psy11552 298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK 377 (714)
Q Consensus 298 ~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGE 377 (714)
.....+.|.++++|++++++.+..|+. .+....+++|++|+++|++++.+|+|.+|.|+++..++..+..+++|++|||
T Consensus 66 ~~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe 144 (198)
T 2ptm_A 66 NYNCRDLVASVPFFVGADSNFVTRVVT-LLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGE 144 (198)
T ss_dssp HHHTHHHHHHCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESC
T ss_pred HHHHHHHHhcCcchhcCCHHHHHHHHH-hccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEech
Confidence 344567788899999999999999999 5778899999999999999999999999999998744448899999999999
Q ss_pred hhhccCCCcceeeec
Q psy11552 378 LALVNNAPRLIITSM 392 (714)
Q Consensus 378 laLl~~~pr~atv~A 392 (714)
.+++.+.||+++++|
T Consensus 145 ~~~~~~~~~~~~~~a 159 (198)
T 2ptm_A 145 ICLLTRERRVASVKC 159 (198)
T ss_dssp HHHHHSSCCSSEEEE
T ss_pred HHHcCCCccceEEEE
Confidence 999999999999988
No 29
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.33 E-value=3.9e-12 Score=120.23 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCC
Q psy11552 293 RTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAG 372 (714)
Q Consensus 293 r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~G 372 (714)
+..-......+.|.++++|++|+++.+..++. .+....+++|++|+++|++++.+|+|++|.|+++..+ ..+..+++|
T Consensus 17 ~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G 94 (160)
T 4f8a_A 17 RADICVHLNRKVFKEHPAFRLASDGCLRALAM-EFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD-EVVAILGKG 94 (160)
T ss_dssp HHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHT-TCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETT-EEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHH-hceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECC-EEEEEecCC
Confidence 33334455667888999999999999999999 6677799999999999999999999999999998854 489999999
Q ss_pred CccchhhhccC--CCcceeeec
Q psy11552 373 EDFGKLALVNN--APRLIITSM 392 (714)
Q Consensus 373 d~FGElaLl~~--~pr~atv~A 392 (714)
++||+.+++.+ .|+.++++|
T Consensus 95 ~~fG~~~~~~~~~~~~~~~~~a 116 (160)
T 4f8a_A 95 DVFGDVFWKEATLAQSCANVRA 116 (160)
T ss_dssp CEEECCTTTCSSCCBCSSEEEE
T ss_pred CEeCcHHHhcCcccceEEEEEE
Confidence 99999999988 688888887
No 30
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.33 E-value=3.9e-12 Score=124.65 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEE
Q psy11552 292 DRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVT 367 (714)
Q Consensus 292 ~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~ 367 (714)
.++....+.+.+.|.++++|++|+++++..++. .+..+.+++|++|+++|++++.+|+|++|.|+++... +| .+.
T Consensus 28 ~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~ 106 (187)
T 3gyd_A 28 GGADKYFEEILEIVNKIKLFGDFSNEEVRYLCS-YMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIA 106 (187)
T ss_dssp EEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHT-TCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEE
T ss_pred CccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHH-hcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEE
Confidence 344556778889999999999999999999999 6777799999999999999999999999999998864 22 788
Q ss_pred EecCCCccchhhhccCCCcceeeec
Q psy11552 368 SLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 368 ~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
.+++|++|||.+++.+.|++++++|
T Consensus 107 ~~~~G~~fGe~~~l~~~~~~~~v~A 131 (187)
T 3gyd_A 107 KVGAGAIIGEMSMIDGMPRSASCVA 131 (187)
T ss_dssp EEETTCEESHHHHHHCCCCSSEEEE
T ss_pred EccCCCeeeeHHHhCCCCeeEEEEE
Confidence 9999999999999999999999887
No 31
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.30 E-value=4.3e-12 Score=116.99 Aligned_cols=94 Identities=21% Similarity=0.372 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCc
Q psy11552 295 SEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED 374 (714)
Q Consensus 295 ~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~ 374 (714)
.++.....+.|.++++|++|+++++..|+. .+....+++|++|+++|++++.+|+|++|.|.++..+ ...+++|++
T Consensus 3 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~~~~~~G~~ 78 (138)
T 1vp6_A 3 RGDFVRNWQLVAAVPLFQKLGPAVLVEIVR-ALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAF 78 (138)
T ss_dssp HHHHHHHHHHHTTCGGGGGCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---CEEECTTCE
T ss_pred hhhHHHHHHHHHhChhhhcCCHHHHHHHHH-hhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---cceECCCCE
Confidence 456777888999999999999999999999 5677799999999999999999999999999998765 357899999
Q ss_pred cchhhhccCCCcceeeec
Q psy11552 375 FGKLALVNNAPRLIITSM 392 (714)
Q Consensus 375 FGElaLl~~~pr~atv~A 392 (714)
||+.+++.+.|+.++++|
T Consensus 79 ~G~~~~~~~~~~~~~~~a 96 (138)
T 1vp6_A 79 FGEMALISGEPRSATVSA 96 (138)
T ss_dssp ECHHHHHHCCCCSSCEEE
T ss_pred eeehHhccCCCceeEEEE
Confidence 999999999999999888
No 32
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.30 E-value=2.4e-12 Score=118.99 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=79.2
Q ss_pred HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---E---EEEecCCCcc
Q psy11552 303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---C---VTSLYAGEDF 375 (714)
Q Consensus 303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~---v~~l~~Gd~F 375 (714)
+.|.++++|++|+++++..++. .+....|++|++|+++|++++.+|+|++|.|+++.... | . +..+++|++|
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIAL-ISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHH-TEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHhhCchhccCCHHHHHHHHH-hhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 3678899999999999999999 56777999999999999999999999999999986432 1 5 8899999999
Q ss_pred chhhhccCCCcceeeec
Q psy11552 376 GKLALVNNAPRLIITSM 392 (714)
Q Consensus 376 GElaLl~~~pr~atv~A 392 (714)
|+.+++.+.|++++++|
T Consensus 85 G~~~~~~~~~~~~~~~a 101 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARA 101 (142)
T ss_dssp CGGGSSTTCBCSSEEEE
T ss_pred chHHHcCCCCceEEEEE
Confidence 99999999999999988
No 33
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.30 E-value=4.3e-12 Score=125.69 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=82.2
Q ss_pred HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchh
Q psy11552 299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 378 (714)
Q Consensus 299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEl 378 (714)
....+.|.++++|++++++.+..|+. .+....|++|++|+++|++++.+|||.+|.|+++..+ |...++++|++|||.
T Consensus 68 ~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-g~~~~l~~G~~fGe~ 145 (202)
T 3bpz_A 68 FNCRKLVASMPLFANADPNFVTAMLT-KLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NKEMKLSDGSYFGEI 145 (202)
T ss_dssp HHTHHHHHTCHHHHTSCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-SCCEEEETTCEECHH
T ss_pred HHHHHHHhcCCchhcCCHHHHHHHHH-hCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC-CeEEEEcCCCEeccH
Confidence 34456788899999999999999999 5677799999999999999999999999999998644 345689999999999
Q ss_pred hhccCCCcceeeec
Q psy11552 379 ALVNNAPRLIITSM 392 (714)
Q Consensus 379 aLl~~~pr~atv~A 392 (714)
+++.+.||+++++|
T Consensus 146 ~~~~~~~~~~~v~a 159 (202)
T 3bpz_A 146 CLLTRGRRTASVRA 159 (202)
T ss_dssp HHHHCSBCSSEEEE
T ss_pred HHhcCCCcccEEEE
Confidence 99999999999987
No 34
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.28 E-value=1.3e-11 Score=115.72 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=84.2
Q ss_pred HHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCC
Q psy11552 298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGE 373 (714)
Q Consensus 298 ~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd 373 (714)
...+.+.|.++++|.+|+++++..|+. .+....+++|++|+++|++++.+|+|++|.|.++.... | .+..+++|+
T Consensus 7 ~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~ 85 (154)
T 2z69_A 7 QRVHQQLLQSHHLFEPLSPVQLQELLA-SSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERN 85 (154)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHH-TCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTE
T ss_pred ChhHHHHhhcChhhcCCCHHHHHHHHh-hCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCC
Confidence 456778899999999999999999999 57777999999999999999999999999999986432 2 688999999
Q ss_pred ccchhhhccCCC-cceeeec
Q psy11552 374 DFGKLALVNNAP-RLIITSM 392 (714)
Q Consensus 374 ~FGElaLl~~~p-r~atv~A 392 (714)
+||+.+++.+.+ +.++++|
T Consensus 86 ~~G~~~~~~~~~~~~~~~~a 105 (154)
T 2z69_A 86 TFAEAMMFMDTPNYVATAQA 105 (154)
T ss_dssp EESGGGGGSSCSBCSSEEEE
T ss_pred eeccHhhccCCCCCceEEEE
Confidence 999999999988 8888887
No 35
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.27 E-value=2.1e-12 Score=128.84 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=81.8
Q ss_pred HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhhh
Q psy11552 301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLAL 380 (714)
Q Consensus 301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGElaL 380 (714)
+...+.++++|++++++.+..|+. .+....|++|++|+++||+++++|+|.+|.|+++..+ ..+..+++|++|||.++
T Consensus 73 ~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~~~ 150 (212)
T 3ukn_A 73 LNKELLQLPLFESASRGCLRSLSL-IIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDN-TVLAILGKGDLIGSDSL 150 (212)
T ss_dssp CCCGGGGSGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSS-CEEEEECTTCEEECSCC
T ss_pred HHHHHHhcHHhhcCCHHHHHHHHH-HhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECC-eEEEEecCCCCcCcHHh
Confidence 344566799999999999999999 6777799999999999999999999999999999755 38999999999999999
Q ss_pred ccCC--Ccceeeec
Q psy11552 381 VNNA--PRLIITSM 392 (714)
Q Consensus 381 l~~~--pr~atv~A 392 (714)
+.+. ||++|++|
T Consensus 151 ~~~~~~~~~~~v~a 164 (212)
T 3ukn_A 151 TKEQVIKTNANVKA 164 (212)
T ss_dssp SSSSCCBBCSEEEE
T ss_pred ccCCCCCcceEEEE
Confidence 9998 99999988
No 36
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.25 E-value=9.7e-12 Score=115.75 Aligned_cols=90 Identities=26% Similarity=0.410 Sum_probs=81.1
Q ss_pred HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccch
Q psy11552 302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGK 377 (714)
Q Consensus 302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGE 377 (714)
.+.+.++++|.+|+++++..|+. .+....+++|++|+++|++++.+|+|++|.|.++.... | .+..+++|++||+
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~ 82 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRA-SMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGE 82 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESG
T ss_pred HHHhhhChhhhcCCHHHHHHHHH-hceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEech
Confidence 34678899999999999999999 56777999999999999999999999999999987532 2 6889999999999
Q ss_pred hhhccCCCcceeeec
Q psy11552 378 LALVNNAPRLIITSM 392 (714)
Q Consensus 378 laLl~~~pr~atv~A 392 (714)
.+++.+.|+.++++|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (149)
T 2pqq_A 83 LSLFDPGPRTATGTA 97 (149)
T ss_dssp GGGTSCEECSSEEEE
T ss_pred HHhcCCCCcceEEEE
Confidence 999999999999888
No 37
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.8e-11 Score=122.62 Aligned_cols=93 Identities=29% Similarity=0.473 Sum_probs=85.4
Q ss_pred HHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhh
Q psy11552 300 QIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLA 379 (714)
Q Consensus 300 ~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEla 379 (714)
.....+.++++|.++++..+..++. .+....+++|++|+++|++++.+|+|.+|.|+++..+.+.+..+++|++|||.+
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~ 200 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLAD-ALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVA 200 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHH-TCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHH-hhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHH
Confidence 3455677899999999999999999 667779999999999999999999999999999998877899999999999999
Q ss_pred hccCCCcceeeecc
Q psy11552 380 LVNNAPRLIITSMV 393 (714)
Q Consensus 380 Ll~~~pr~atv~Ai 393 (714)
++.+.||++|++|+
T Consensus 201 ~~~~~~~~~~v~a~ 214 (246)
T 3of1_A 201 LLNDLPRQATVTAT 214 (246)
T ss_dssp HHHTCBCSSEEEES
T ss_pred HhCCCCcccEEEEC
Confidence 99999999999983
No 38
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.18 E-value=4.3e-11 Score=127.71 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=82.8
Q ss_pred HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchh
Q psy11552 302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKL 378 (714)
Q Consensus 302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGEl 378 (714)
.+.|.++++|++|+++++..|+. .+...+|++|++|+++||+++++|||++|.|+++..+.+ .+..+++|++|||+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAA-SVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHh-hCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHH
Confidence 35788999999999999999999 567789999999999999999999999999999885432 78999999999999
Q ss_pred hhccCCCcceeeec
Q psy11552 379 ALVNNAPRLIITSM 392 (714)
Q Consensus 379 aLl~~~pr~atv~A 392 (714)
+++.+.||++|++|
T Consensus 91 ~l~~~~~~~~~v~A 104 (333)
T 4ava_A 91 ALLRDSPRSATVTT 104 (333)
T ss_dssp HHHHTCBCSSEEEE
T ss_pred HhcCCCCceEEEEE
Confidence 99999999999998
No 39
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.17 E-value=5.3e-11 Score=118.30 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=77.2
Q ss_pred HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhh
Q psy11552 305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLAL 380 (714)
Q Consensus 305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaL 380 (714)
|.++++|++|+++++..++. .+....|++|++|+++|++++++|+|.+|.|.++... +| .+..+++|++||+.++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~ 79 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALS-YFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL 79 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHT-TCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHH
T ss_pred CCCChhhcCCCHHHHHHHHH-hheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhh
Confidence 46789999999999999999 5677799999999999999999999999999998752 22 7889999999999999
Q ss_pred ccCCCcceeeec
Q psy11552 381 VNNAPRLIITSM 392 (714)
Q Consensus 381 l~~~pr~atv~A 392 (714)
+.+.|++++++|
T Consensus 80 ~~~~~~~~~~~a 91 (216)
T 4ev0_A 80 LDEGERSASAVA 91 (216)
T ss_dssp HHCCBCSSEEEE
T ss_pred cCCCCcceEEEE
Confidence 999999988887
No 40
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.16 E-value=3.3e-11 Score=121.03 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=82.1
Q ss_pred HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccc
Q psy11552 301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFG 376 (714)
Q Consensus 301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FG 376 (714)
+.+.|.++++|.+|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++.... | .+..+++|++||
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G 82 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTK-QLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFG 82 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHT-TSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred HHHHHhcChhhcCCCHHHHHHHHh-hCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEe
Confidence 356789999999999999999999 56677999999999999999999999999999988532 2 688999999999
Q ss_pred hhhhccCCCcceeeec
Q psy11552 377 KLALVNNAPRLIITSM 392 (714)
Q Consensus 377 ElaLl~~~pr~atv~A 392 (714)
+.+++.+.|+.++++|
T Consensus 83 ~~~~~~~~~~~~~~~A 98 (227)
T 3d0s_A 83 ELSIFDPGPRTSSATT 98 (227)
T ss_dssp CHHHHSCSCCSSEEEE
T ss_pred eHHHcCCCCceeEEEE
Confidence 9999999999999887
No 41
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.15 E-value=6.3e-11 Score=119.73 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=83.9
Q ss_pred HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCc
Q psy11552 299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGED 374 (714)
Q Consensus 299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~ 374 (714)
....+.|.++++|.+|+++++..|+. .+....|++|++|+++|++++++|+|++|.|.++... +| .+..+++|++
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~ 85 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLS-QAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGES 85 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHT-TCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHh-hCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCE
Confidence 35667899999999999999999999 5677799999999999999999999999999998853 22 7889999999
Q ss_pred cchhhhccCCCcceeeec
Q psy11552 375 FGKLALVNNAPRLIITSM 392 (714)
Q Consensus 375 FGElaLl~~~pr~atv~A 392 (714)
||+.+++.+.|+.++++|
T Consensus 86 ~G~~~~~~~~~~~~~~~a 103 (237)
T 3fx3_A 86 FGEAVALRNTPYPVSAEA 103 (237)
T ss_dssp ECHHHHHHTCCCSSEEEE
T ss_pred echHHHhcCCCCCceEEE
Confidence 999999999999888887
No 42
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.14 E-value=4.7e-11 Score=120.24 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=81.5
Q ss_pred HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccch
Q psy11552 302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGK 377 (714)
Q Consensus 302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGE 377 (714)
.+.|.++++|.+|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++... +| .+..+++|++||+
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~ 83 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALK-VVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGE 83 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHH-TEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEEST
T ss_pred HHHHhcChhhccCCHHHHHHHHH-hcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEee
Confidence 56889999999999999999999 5677799999999999999999999999999998854 22 6889999999999
Q ss_pred hhhccCCCcceeeec
Q psy11552 378 LALVNNAPRLIITSM 392 (714)
Q Consensus 378 laLl~~~pr~atv~A 392 (714)
.+++.+.|+.++++|
T Consensus 84 ~~~~~~~~~~~~~~a 98 (231)
T 3e97_A 84 TAVLAHQERSASVRA 98 (231)
T ss_dssp TTTTCCCCCCEEEEE
T ss_pred HHHhCCCCceEEEEE
Confidence 999999999888877
No 43
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.14 E-value=2.2e-11 Score=112.16 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=75.6
Q ss_pred HHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---E--EEEecCCCccchh
Q psy11552 304 ELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---C--VTSLYAGEDFGKL 378 (714)
Q Consensus 304 ~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~--v~~l~~Gd~FGEl 378 (714)
.|.++++|++|+++++..|+. .+....+++|++|+++||+++.+|+|++|.|++....+| . +..+++|++|||+
T Consensus 7 ~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 7 GVRRVPLFENMDERLLDAICE-RLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp SCSSCSGGGSCCHHHHHHHHH-HCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHcCcchhhCCHHHHHHHHH-HheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 577899999999999999999 567779999999999999999999999999997644333 3 3499999999999
Q ss_pred hh---ccCCC------cceeeec
Q psy11552 379 AL---VNNAP------RLIITSM 392 (714)
Q Consensus 379 aL---l~~~p------r~atv~A 392 (714)
++ +.+.| ++++++|
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A 108 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKA 108 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEE
T ss_pred HHHHHhccccccccccceeEEEE
Confidence 96 78875 5678887
No 44
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.14 E-value=1.3e-10 Score=117.48 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=83.1
Q ss_pred HHHHHHHhCCccCCCCCHHHHHHHHhhc-ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCC
Q psy11552 299 EQIYEELLHLKPLHHLSNSVRRELAGVV-MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGE 373 (714)
Q Consensus 299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~-~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd 373 (714)
......+.++++|.+|+++++..|+... +....|++|++|+++|++++.+|+|++|.|.++.... | .+..+++|+
T Consensus 14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~ 93 (232)
T 1zyb_A 14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPY 93 (232)
T ss_dssp HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSE
T ss_pred HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCC
Confidence 4566778899999999999999999931 6777999999999999999999999999999987432 2 788999999
Q ss_pred ccchhhhccCCC-cceeeec
Q psy11552 374 DFGKLALVNNAP-RLIITSM 392 (714)
Q Consensus 374 ~FGElaLl~~~p-r~atv~A 392 (714)
+||+.+++.+.| +.++++|
T Consensus 94 ~fG~~~~~~~~~~~~~~~~A 113 (232)
T 1zyb_A 94 LIEPQSLFGMNTNYASSYVA 113 (232)
T ss_dssp EECGGGGSSSCCBCSSEEEE
T ss_pred eeeehHHhCCCCCCceEEEE
Confidence 999999999988 8888887
No 45
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.13 E-value=1.1e-10 Score=114.26 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=78.2
Q ss_pred HHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchh-
Q psy11552 304 ELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKL- 378 (714)
Q Consensus 304 ~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGEl- 378 (714)
.+.++++|.+|+++++..++. .+..+.+++|++|+++||+++++|+|++|.|+++..+ +| .+..++||++|||+
T Consensus 8 l~~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~ 86 (194)
T 3dn7_A 8 LINHIRKFIFLTDEDAGTLSA-FFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYM 86 (194)
T ss_dssp HHHHHHTTSCCCHHHHHHHHT-TCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH-hCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehH
Confidence 456688999999999999999 5677799999999999999999999999999998853 23 78889999999997
Q ss_pred hhccCCCcceeeec
Q psy11552 379 ALVNNAPRLIITSM 392 (714)
Q Consensus 379 aLl~~~pr~atv~A 392 (714)
+++.+.|+.++++|
T Consensus 87 ~~~~~~~~~~~~~a 100 (194)
T 3dn7_A 87 AFQKQQPADFYIQS 100 (194)
T ss_dssp HHHHTCBCSSEEEE
T ss_pred HHhcCCCCceEEEE
Confidence 78899999888887
No 46
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.11 E-value=3.3e-10 Score=118.13 Aligned_cols=91 Identities=25% Similarity=0.339 Sum_probs=81.7
Q ss_pred HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC--c---eEEEEecCCCcc
Q psy11552 301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG--K---GCVTSLYAGEDF 375 (714)
Q Consensus 301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~--~---~~v~~l~~Gd~F 375 (714)
....+.++++|.++++..+..++. .+....+++|++|+++|++++.+|+|.+|.|.+.... + ..+..+++|++|
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVAD-ALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHhhchHhhhCCHHHHHHHHh-hcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 445677899999999999999999 5677799999999999999999999999999998742 1 278999999999
Q ss_pred chhhhccCCCcceeeec
Q psy11552 376 GKLALVNNAPRLIITSM 392 (714)
Q Consensus 376 GElaLl~~~pr~atv~A 392 (714)
||.+++.+.||++|++|
T Consensus 234 Ge~~ll~~~~~~~tv~a 250 (291)
T 2qcs_B 234 GEIALLMNRPKAATVVA 250 (291)
T ss_dssp CSGGGTCCCCCSSEEEE
T ss_pred cHHHHcCCCCcceEEEE
Confidence 99999999999999988
No 47
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.11 E-value=1e-10 Score=122.74 Aligned_cols=93 Identities=27% Similarity=0.395 Sum_probs=84.9
Q ss_pred HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC--ce---EEEEecCCC
Q psy11552 299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG--KG---CVTSLYAGE 373 (714)
Q Consensus 299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~--~~---~v~~l~~Gd 373 (714)
......+.++++|..++++++..++. .+....+++|++|+++||+++.+|+|++|.|.++... +| .+..+++|+
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~ 231 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLAD-VLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGD 231 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTT-TCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTC
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHH-hccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCC
Confidence 44667888999999999999999999 5677799999999999999999999999999999865 23 788999999
Q ss_pred ccchhhhccCCCcceeeec
Q psy11552 374 DFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 374 ~FGElaLl~~~pr~atv~A 392 (714)
+|||.+++.+.||++|++|
T Consensus 232 ~fGe~~ll~~~~~~~tv~a 250 (299)
T 3shr_A 232 WFGEKALQGEDVRTANVIA 250 (299)
T ss_dssp EECGGGGSSSEECSSEEEE
T ss_pred EeChHHHhCCCCcceEEEE
Confidence 9999999999999999998
No 48
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.09 E-value=6.3e-11 Score=118.70 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=82.2
Q ss_pred HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccc
Q psy11552 301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFG 376 (714)
Q Consensus 301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FG 376 (714)
+.+.|.++++|++|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++.... | .+..++||++||
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G 85 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLA-SSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA 85 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHT-SCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEES
T ss_pred HHHHHhcChhhcCCCHHHHHHHHh-hCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee
Confidence 456889999999999999999999 67788999999999999999999999999999987432 2 688899999999
Q ss_pred hhhhccCCC-cceeeec
Q psy11552 377 KLALVNNAP-RLIITSM 392 (714)
Q Consensus 377 ElaLl~~~p-r~atv~A 392 (714)
+.+++.+.| +.++++|
T Consensus 86 ~~~~~~~~~~~~~~~~a 102 (227)
T 3dkw_A 86 EAMMFMDTPNYVATAQA 102 (227)
T ss_dssp CTTTTTTCSBCSSCEEE
T ss_pred eHHhcCCCCCCceEEEE
Confidence 999999999 8888877
No 49
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.09 E-value=2.3e-10 Score=113.93 Aligned_cols=89 Identities=10% Similarity=0.189 Sum_probs=79.2
Q ss_pred HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCc--cc
Q psy11552 303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGED--FG 376 (714)
Q Consensus 303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~--FG 376 (714)
+.|.++++|.+|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++.... | .+..++||++ ||
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g 81 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISD-NLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLS 81 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHT-TCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGG
T ss_pred chHHhChhhhcCCHHHHHHHHh-hCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehh
Confidence 5678899999999999999999 56777999999999999999999999999999987532 2 6788999999 89
Q ss_pred hhhhccCCCcceeeec
Q psy11552 377 KLALVNNAPRLIITSM 392 (714)
Q Consensus 377 ElaLl~~~pr~atv~A 392 (714)
+.+++.+.|+.++++|
T Consensus 82 ~~~~~~~~~~~~~~~a 97 (220)
T 3dv8_A 82 ASCIMRSIQFEVTIEA 97 (220)
T ss_dssp GGGGCTTCCCCCEEEE
T ss_pred HHHHhCCCCCceEEEE
Confidence 9999999999888877
No 50
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.08 E-value=2.5e-10 Score=114.58 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=69.7
Q ss_pred HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccc
Q psy11552 301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFG 376 (714)
Q Consensus 301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FG 376 (714)
+...+.+.++|.+|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++... +| .+..+++|++||
T Consensus 9 ~~~~lr~~~lf~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G 87 (230)
T 3iwz_A 9 VTTTVRNATPSLTLDAGTIERFLA-HSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVG 87 (230)
T ss_dssp -------------CCHHHHHHHHT-TSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred ehhhhhhcchhccCCHHHHHHHHH-hCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEE
Confidence 455788899999999999999999 5677799999999999999999999999999998743 22 788999999999
Q ss_pred hhhhccCC-Ccceeeec
Q psy11552 377 KLALVNNA-PRLIITSM 392 (714)
Q Consensus 377 ElaLl~~~-pr~atv~A 392 (714)
+.+++.+. |++++++|
T Consensus 88 ~~~~~~~~~~~~~~~~a 104 (230)
T 3iwz_A 88 EMGLFIESDTREVILRT 104 (230)
T ss_dssp CGGGTSCCSBCCSEEEE
T ss_pred ehhhhcCCCCceeEEEE
Confidence 99999875 78888776
No 51
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.03 E-value=2.3e-10 Score=115.18 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=75.9
Q ss_pred CCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhcc
Q psy11552 307 HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVN 382 (714)
Q Consensus 307 ~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~ 382 (714)
.+++|++|+++++..|+. ......|++|++|+++|++++.+|+|++|.|.++.... | .+..++||++||+.+++.
T Consensus 14 ~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDK-EIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp SHHHHTTCCHHHHHHHHH-HCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred ccHhhhcCCHHHHHHHHh-hCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 578999999999999999 66777999999999999999999999999999986422 2 789999999999999999
Q ss_pred CCCcceeeec
Q psy11552 383 NAPRLIITSM 392 (714)
Q Consensus 383 ~~pr~atv~A 392 (714)
+.|+.++++|
T Consensus 93 ~~~~~~~~~A 102 (232)
T 2gau_A 93 EETCSSTAIA 102 (232)
T ss_dssp TSCCSSEEEE
T ss_pred CCCcceEEEE
Confidence 9999988887
No 52
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.02 E-value=6.1e-10 Score=123.05 Aligned_cols=89 Identities=29% Similarity=0.411 Sum_probs=79.9
Q ss_pred HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-------e---EEEEecCC
Q psy11552 303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-------G---CVTSLYAG 372 (714)
Q Consensus 303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-------~---~v~~l~~G 372 (714)
..+.++++|..|++.++..|+. .+....|++|++|+++|+.++++|||.+|.|.|+.... | .+..+++|
T Consensus 267 ~~L~~v~lf~~Ls~~el~~L~~-~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G 345 (416)
T 3tnp_B 267 SFIESLPFLKSLEVSERLKVVD-VIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG 345 (416)
T ss_dssp SSGGGCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred HHHhhchHhhcCCHHHHHHHHh-hceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence 3667799999999999999999 56777999999999999999999999999999987532 2 78999999
Q ss_pred CccchhhhccCCCcceeeec
Q psy11552 373 EDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 373 d~FGElaLl~~~pr~atv~A 392 (714)
++|||++++.+.||++||+|
T Consensus 346 ~~fGE~all~~~~r~~tv~A 365 (416)
T 3tnp_B 346 QYFGELALVTNKPRAASAHA 365 (416)
T ss_dssp CEESGGGGTCCSCCSSEEEE
T ss_pred CEecHHHHhCCCCceeEEEE
Confidence 99999999999999999998
No 53
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=124.70 Aligned_cols=92 Identities=27% Similarity=0.347 Sum_probs=82.5
Q ss_pred HHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc--e---EEEEecCCCc
Q psy11552 300 QIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK--G---CVTSLYAGED 374 (714)
Q Consensus 300 ~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~--~---~v~~l~~Gd~ 374 (714)
.....+.++++|..|++.++..|+. .+....|++|++|+++|+.++++|||.+|.|.++.... + .+..+++|++
T Consensus 245 ~~~~~L~~v~~f~~Ls~~el~~l~~-~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 245 MYEEFLSKVSILESLEKWERLTVAD-ALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHCSTTTTCCTTHHHHHHT-TCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHhhhhHHHHhccHHHHHHHHH-hhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 3455778899999999999999999 56667999999999999999999999999999988531 1 6899999999
Q ss_pred cchhhhccCCCcceeeec
Q psy11552 375 FGKLALVNNAPRLIITSM 392 (714)
Q Consensus 375 FGElaLl~~~pr~atv~A 392 (714)
|||++++.+.||++||+|
T Consensus 324 fGe~all~~~~r~~tv~A 341 (381)
T 4din_B 324 FGEIALLLNRPRAATVVA 341 (381)
T ss_dssp ECTTGGGSCCBCSSEEEE
T ss_pred echHHHhCCCCceeEEEE
Confidence 999999999999999998
No 54
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.94 E-value=1.7e-09 Score=106.82 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=70.6
Q ss_pred ccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCC
Q psy11552 309 KPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNA 384 (714)
Q Consensus 309 ~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~ 384 (714)
.+++.++++++..++. .+....|++|++|+++|++++++|+|++|.|.++... +| .+..++||++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~ 80 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLS-HCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG 80 (210)
T ss_dssp -----CCCHHHHHHHT-TSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTT
T ss_pred cCCCcCCHHHHHHHHH-hcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCC
Confidence 4678899999999999 6677799999999999999999999999999998753 23 78889999999999999988
Q ss_pred -Ccceeeec
Q psy11552 385 -PRLIITSM 392 (714)
Q Consensus 385 -pr~atv~A 392 (714)
|+.++++|
T Consensus 81 ~~~~~~~~a 89 (210)
T 3ryp_A 81 QERSAWVRA 89 (210)
T ss_dssp CBCSSEEEE
T ss_pred CCceEEEEE
Confidence 78888877
No 55
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.88 E-value=4.3e-09 Score=103.62 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=68.2
Q ss_pred CCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCC----C
Q psy11552 314 LSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNA----P 385 (714)
Q Consensus 314 Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~----p 385 (714)
|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++.... | .+..+++|++||+.+++.+. |
T Consensus 1 l~~~~l~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~ 79 (207)
T 2oz6_A 1 MKLKHLDKLLA-HCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQE 79 (207)
T ss_dssp CCHHHHHHHHH-SSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CB
T ss_pred CCHHHHHHHHh-hcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCC
Confidence 68899999999 67777999999999999999999999999999987532 2 78899999999999999988 7
Q ss_pred cceeeec
Q psy11552 386 RLIITSM 392 (714)
Q Consensus 386 r~atv~A 392 (714)
+.++++|
T Consensus 80 ~~~~~~A 86 (207)
T 2oz6_A 80 RSAWVRA 86 (207)
T ss_dssp CCSEEEE
T ss_pred cceEEEE
Confidence 8888877
No 56
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.88 E-value=3.1e-09 Score=109.41 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=68.8
Q ss_pred cCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCC-
Q psy11552 310 PLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNA- 384 (714)
Q Consensus 310 ~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~- 384 (714)
++..|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++... +| .+..+++|++||+.+++.+.
T Consensus 53 ~~~~l~~~~l~~l~~-~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~ 131 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLS-HCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 131 (260)
T ss_dssp ------CHHHHHHHT-TSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred HcCCCCHHHHHHHHh-hCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCC
Confidence 446799999999999 6677799999999999999999999999999998753 23 78899999999999999988
Q ss_pred Ccceeeec
Q psy11552 385 PRLIITSM 392 (714)
Q Consensus 385 pr~atv~A 392 (714)
|++++++|
T Consensus 132 ~~~~~~~A 139 (260)
T 3kcc_A 132 ERSAWVRA 139 (260)
T ss_dssp BCCSEEEE
T ss_pred CCceEEEE
Confidence 88888877
No 57
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.78 E-value=4.4e-09 Score=104.67 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=66.8
Q ss_pred CCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhcc
Q psy11552 307 HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVN 382 (714)
Q Consensus 307 ~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~ 382 (714)
.-|+|...++++...++. .+..++|++|++|+++|++++.+|+|++|.|.++... +| .+..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLP-CGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ----------CCGGGGGG-GSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS
T ss_pred ccccchhhccCCHHHHhc-ccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc
Confidence 457899999999999999 6777799999999999999999999999999998753 22 688999999999999998
Q ss_pred CC-Ccceeeec
Q psy11552 383 NA-PRLIITSM 392 (714)
Q Consensus 383 ~~-pr~atv~A 392 (714)
+. |+.++++|
T Consensus 82 ~~~~~~~~~~A 92 (213)
T 1o5l_A 82 SEPRFPVNVVA 92 (213)
T ss_dssp SSCBCSSEEEE
T ss_pred CCCCceEEEEE
Confidence 76 88888877
No 58
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.78 E-value=2.7e-09 Score=106.47 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=71.2
Q ss_pred HHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchhhh
Q psy11552 304 ELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLAL 380 (714)
Q Consensus 304 ~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGElaL 380 (714)
.|.++++|.+|+++++..++. .+....|++|++|+++|++++.+|+|++|.|.++...+| .+..++||++||+
T Consensus 5 ~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--- 80 (220)
T 2fmy_A 5 RLTDTNLLEVLNSEEYSGVLK-EFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--- 80 (220)
T ss_dssp CSCSSCHHHHTTSGGGTTTGG-GSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred hhhcChhhhcCCHHHHHHHHH-hhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence 567899999999999999999 577779999999999999999999999999999654433 6889999999999
Q ss_pred ccCCCcceeeec
Q psy11552 381 VNNAPRLIITSM 392 (714)
Q Consensus 381 l~~~pr~atv~A 392 (714)
|+.++++|
T Consensus 81 ----~~~~~~~A 88 (220)
T 2fmy_A 81 ----HTRAFIQA 88 (220)
T ss_dssp ----CSSSEEEE
T ss_pred ----ccceEEEE
Confidence 67777766
No 59
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=98.71 E-value=4e-09 Score=105.49 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=69.5
Q ss_pred HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchhhhc
Q psy11552 305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALV 381 (714)
Q Consensus 305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGElaLl 381 (714)
|.++++|++|+++++..|+. .+....|++|++|+++|++++++|+|++|.|.++...+| .+..++||++||
T Consensus 2 l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 2 PPRFNIANVLLSPDGETFFR-GFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp CCCCCTHHHHTSTTTTTTTT-TCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred cccchhhhcCCHHHHHHHHh-hCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 56789999999999999999 577779999999999999999999999999999743333 688999999999
Q ss_pred cCCCcceeeec
Q psy11552 382 NNAPRLIITSM 392 (714)
Q Consensus 382 ~~~pr~atv~A 392 (714)
.|++++++|
T Consensus 76 --~~~~~~~~A 84 (222)
T 1ft9_A 76 --MHSGCLVEA 84 (222)
T ss_dssp --SCSSCEEEE
T ss_pred --CCCCEEEEE
Confidence 567777666
No 60
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.66 E-value=3.3e-09 Score=114.47 Aligned_cols=87 Identities=22% Similarity=0.392 Sum_probs=1.0
Q ss_pred HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhhhc
Q psy11552 302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALV 381 (714)
Q Consensus 302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGElaLl 381 (714)
.+.+.++++|++++++.+++++. .+....+++|++|++|||+++++|+|.+|.|+++..+ ...+++|++|||.+++
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~-~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~~~l~~G~~fGe~~~l 302 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVR-ALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALI 302 (355)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHH-hceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---eeEECCCCEEeehHHh
Confidence 45678899999999999999999 5677799999999999999999999999999998765 3589999999999999
Q ss_pred cCCCcceeeec
Q psy11552 382 NNAPRLIITSM 392 (714)
Q Consensus 382 ~~~pr~atv~A 392 (714)
.+.||+++++|
T Consensus 303 ~~~~~~~~~~A 313 (355)
T 3beh_A 303 SGEPRSATVSA 313 (355)
T ss_dssp -----------
T ss_pred CCCCcceEEEE
Confidence 99999999988
No 61
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.66 E-value=2e-08 Score=102.33 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=72.4
Q ss_pred HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhh
Q psy11552 305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLAL 380 (714)
Q Consensus 305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaL 380 (714)
+....+|..|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++... +| .+..++||++||+ +
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQ-MGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGG-GSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhccchhhCCHHHHHHHHh-hCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 44566779999999999999 5778799999999999999999999999999998853 22 7889999999999 6
Q ss_pred ccCCCcceeeec
Q psy11552 381 VNNAPRLIITSM 392 (714)
Q Consensus 381 l~~~pr~atv~A 392 (714)
+.+. +.++++|
T Consensus 88 l~~~-~~~~~~A 98 (250)
T 3e6c_C 88 YPTG-NNIYATA 98 (250)
T ss_dssp SCCS-CCEEEEE
T ss_pred cCCC-CceEEEE
Confidence 7776 7777766
No 62
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.61 E-value=5.1e-08 Score=95.39 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=56.1
Q ss_pred EeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552 330 AHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 330 ~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
++|++|++|+++|++++.+|+|++|.|.++... +| .+..++||++||| +++.+.|+.++++|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A 67 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEA 67 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEE
Confidence 468999999999999999999999999998753 22 6889999999999 99999999999987
No 63
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.57 E-value=7.7e-08 Score=97.29 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHhh-cceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCCc
Q psy11552 312 HHLSNSVRRELAGV-VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAPR 386 (714)
Q Consensus 312 ~~Ls~~~l~~L~~~-~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~pr 386 (714)
++|+++++.+++.. ....++|++|++|+++||+++.+|+|++|.|.++.... | .+..+ +|++||+++++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 47889999998852 36677899999999999999999999999999987532 2 67777 9999999999988864
Q ss_pred --ceeeec
Q psy11552 387 --LIITSM 392 (714)
Q Consensus 387 --~atv~A 392 (714)
..++.|
T Consensus 81 ~~~~~~~a 88 (238)
T 2bgc_A 81 VGYYNLEV 88 (238)
T ss_dssp SCCCEEEE
T ss_pred CcceeEEE
Confidence 445544
No 64
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.50 E-value=1.9e-07 Score=94.76 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcce---EEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCC--c
Q psy11552 316 NSVRRELAGVVMF---EAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAP--R 386 (714)
Q Consensus 316 ~~~l~~L~~~~~~---~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~p--r 386 (714)
++.++.|+. ... .+.|++|++|+++|++++.+|+|++|.|+++.... | .+..++||++||+.+++.+.| +
T Consensus 30 ~~~l~~L~~-~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~ 108 (243)
T 3la7_A 30 ANVFRQMAT-GAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDR 108 (243)
T ss_dssp HHHHHHHCC-SSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBC
T ss_pred HHHHHHHhh-ccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcc
Confidence 666777777 445 67999999999999999999999999999987532 2 788899999999999998876 4
Q ss_pred ceeeec
Q psy11552 387 LIITSM 392 (714)
Q Consensus 387 ~atv~A 392 (714)
.++++|
T Consensus 109 ~~~~~A 114 (243)
T 3la7_A 109 FYHAVA 114 (243)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 466655
No 65
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.37 E-value=3.2e-07 Score=90.12 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=57.0
Q ss_pred ceEEeecCCCEEEccCCcC--CeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552 327 MFEAHPRKGEILFHQGDEG--KSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNAPRLIITSM 392 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g--~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~pr~atv~A 392 (714)
+....|++|++|+++|+++ +.+|+|++|.|.++... +| .+..++||++||+ +++.+.|+.++++|
T Consensus 5 ~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A 75 (202)
T 2zcw_A 5 RETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEA 75 (202)
T ss_dssp -CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEE
T ss_pred ceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEE
Confidence 4456899999999999999 99999999999998753 22 6889999999999 99999999998888
No 66
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=97.71 E-value=8.2e-05 Score=72.28 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=86.0
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+ +++.+.|+. .++.+ .+++.+
T Consensus 10 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~--------------~~~~A-~~~~~v 73 (195)
T 3b02_A 10 IYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYR--------------YTAEA-MTEAVV 73 (195)
T ss_dssp EECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCS--------------SEEEE-SSSEEE
T ss_pred EECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCce--------------eEEEE-CCcEEE
Confidence 6789999999999999999998732 234668899999999 999988877 67777 567788
Q ss_pred eeecCCccccccchhhhh-----hhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh--------cCChHHHHH
Q psy11552 469 KFRGPNRFQQITANLDVF-----LRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE--------YRNINALFA 535 (714)
Q Consensus 469 ~~l~r~~f~~~tpnI~~~-----i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~--------l~Nf~s~~a 535 (714)
..+++..|. |.+... ..+......|+.. +...+..+|. ...++.++...-. +.==..-.|
T Consensus 74 ~~i~~~~~~---p~~~~~~~~~l~~~l~~~~~~~~~--l~~~~~~~Rl--~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA 146 (195)
T 3b02_A 74 QGLEPRAMD---HEALHRVARNLARQMRRVQAYEAH--LQTGELRARI--ARYLLFLADTPLSARDRQGIYVTVSHEEIA 146 (195)
T ss_dssp EEECGGGCC---HHHHHHHHHHHHHHHHHHHHHHHH--HTSSCHHHHH--HHHHHHHTTSTTEEEETTEEEEECCHHHHH
T ss_pred EEEcHHHcC---HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHH--HHHHHHHHHHcCCCCCCCeeeccCCHHHHH
Confidence 889999887 444321 2333333344332 3344555543 3334444332211 110134445
Q ss_pred HHHhcCchhhhchHHhh
Q psy11552 536 VLMGLSNVAVSRLSLTW 552 (714)
Q Consensus 536 I~~gL~~~~V~RLk~Tw 552 (714)
=+.|++-..|+|.-+.|
T Consensus 147 ~~lg~sr~tvsR~l~~L 163 (195)
T 3b02_A 147 DATASIRESVSKVLADL 163 (195)
T ss_dssp HTTTSCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHH
Confidence 55566666676654444
No 67
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=97.70 E-value=2.2e-05 Score=76.74 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=60.4
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG 472 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~ 472 (714)
|+++|+.++.+|+|.+|.+++.......+..+++|++||+.+++.+.|+. .++.+ .+++.++.++
T Consensus 105 I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~~~~~--------------~~~~a-~~~~~l~~i~ 169 (198)
T 2ptm_A 105 VIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRV--------------ASVKC-ETYCTLFSLS 169 (198)
T ss_dssp EECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHSSCCS--------------SEEEE-SSCEEEEEEE
T ss_pred EEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCCCccc--------------eEEEE-eeEEEEEEEe
Confidence 78899999999999999999987444467789999999999999998887 67777 5677777888
Q ss_pred CCcccccc
Q psy11552 473 PNRFQQIT 480 (714)
Q Consensus 473 r~~f~~~t 480 (714)
++.|....
T Consensus 170 ~~~f~~ll 177 (198)
T 2ptm_A 170 VQHFNQVL 177 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665433
No 68
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=97.56 E-value=4e-05 Score=70.04 Aligned_cols=72 Identities=25% Similarity=0.346 Sum_probs=59.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG 472 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~ 472 (714)
|+++|+.++.+|+|++|.+++..++ ..+..+++|+.||+.+++.+.++. .++.+ .+++.++.++
T Consensus 57 i~~~g~~~~~~y~i~~G~v~~~~~g-~~~~~~~~G~~fGe~~~l~~~~~~--------------~~~~a-~~~~~v~~i~ 120 (139)
T 3ocp_A 57 IIKEGDVGSLVYVMEDGKVEVTKEG-VKLCTMGPGKVFGELAILYNCTRT--------------ATVKT-LVNVKLWAID 120 (139)
T ss_dssp EECTTSCCCEEEEEEECCEEEEETT-EEEEEECTTCEESCHHHHHCCCCS--------------SEEEE-SSCEEEEEEE
T ss_pred EEeCCCcCCEEEEEEeCEEEEEECC-EEEEEeCCCCEeccHHHHCCCCcc--------------eEEEE-CcceEEEEEc
Confidence 7899999999999999999998766 567789999999999999988877 67777 5677777777
Q ss_pred CCcccccc
Q psy11552 473 PNRFQQIT 480 (714)
Q Consensus 473 r~~f~~~t 480 (714)
+..+....
T Consensus 121 ~~~~~~l~ 128 (139)
T 3ocp_A 121 RQCFQTIM 128 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665433
No 69
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=97.55 E-value=4.1e-05 Score=75.56 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=61.2
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCC--chhHHHHHHhhhheeeeeccccccCCceeee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNA--PSYQLHMYLEQMAVYFTTTAPDIKGPRRYKF 470 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~--p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~ 470 (714)
|+++|+.++.+|+|.+|.+++..++ ..+..+++||.|||.+++... |+. +++.+ .+++.++.
T Consensus 109 I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~~~~~~~~~~~~--------------~~v~a-~~~~~l~~ 172 (212)
T 3ukn_A 109 LIRQGDALQAIYFVCSGSMEVLKDN-TVLAILGKGDLIGSDSLTKEQVIKTN--------------ANVKA-LTYCDLQY 172 (212)
T ss_dssp EECTTSBCCEEEEEEECCEEEESSS-CEEEEECTTCEEECSCCSSSSCCBBC--------------SEEEE-SSCEEEEE
T ss_pred EEECCCcccEEEEEEecEEEEEECC-eEEEEecCCCCcCcHHhccCCCCCcc--------------eEEEE-cccEEEEE
Confidence 7899999999999999999999865 667789999999999999987 776 77777 67777788
Q ss_pred ecCCccccccc
Q psy11552 471 RGPNRFQQITA 481 (714)
Q Consensus 471 l~r~~f~~~tp 481 (714)
++++.|.....
T Consensus 173 i~~~~f~~ll~ 183 (212)
T 3ukn_A 173 ISLKGLREVLR 183 (212)
T ss_dssp EEHHHHHHHHH
T ss_pred EeHHHHHHHHH
Confidence 88877655443
No 70
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=97.53 E-value=4.7e-05 Score=74.59 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=58.7
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG 472 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~ 472 (714)
|+++|+.++.+|+|.+|.+++...+.. ...+++|+.||+.+|+...|+. +++.+ .+++.++.++
T Consensus 106 I~~~g~~~~~ly~I~~G~v~v~~~~g~-~~~l~~G~~fGe~~~~~~~~~~--------------~~v~a-~~~~~l~~i~ 169 (202)
T 3bpz_A 106 IIREGTIGKKMYFIQHGVVSVLTKGNK-EMKLSDGSYFGEICLLTRGRRT--------------ASVRA-DTYCRLYSLS 169 (202)
T ss_dssp EECTTSBCCEEEEEEECEEEEECTTSC-CEEEETTCEECHHHHHHCSBCS--------------SEEEE-SSCEEEEEEE
T ss_pred EEECCCcCCeEEEEeccEEEEEECCCe-EEEEcCCCEeccHHHhcCCCcc--------------cEEEE-eeEEEEEEEE
Confidence 788999999999999999999875433 3478999999999999998877 67777 5677778888
Q ss_pred CCcccccc
Q psy11552 473 PNRFQQIT 480 (714)
Q Consensus 473 r~~f~~~t 480 (714)
++.|....
T Consensus 170 ~~~f~~ll 177 (202)
T 3bpz_A 170 VDNFNEVL 177 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87765433
No 71
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=97.53 E-value=0.00024 Score=70.47 Aligned_cols=142 Identities=22% Similarity=0.314 Sum_probs=89.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+.|+. .++.+ .+++.+
T Consensus 40 i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~--------------~~~~A-~~~~~v 104 (227)
T 3d0s_A 40 VFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRT--------------SSATT-ITEVRA 104 (227)
T ss_dssp EECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCS--------------SEEEE-SSCEEE
T ss_pred EEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCce--------------eEEEE-cccEEE
Confidence 7899999999999999999998732 2346688999999999999988776 67777 567778
Q ss_pred eeecCCccccccchhhhhh--------hhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh-------cC--ChH
Q psy11552 469 KFRGPNRFQQITANLDVFL--------RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE-------YR--NIN 531 (714)
Q Consensus 469 ~~l~r~~f~~~tpnI~~~i--------~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~-------l~--Nf~ 531 (714)
+.++++.+......-..+. .+......++.. +...+..+|. ...+..++...-. +. ==.
T Consensus 105 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~--l~~~~~~~Rl--~~~L~~l~~~~~~~~~~~~~i~~~~t~ 180 (227)
T 3d0s_A 105 VSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLAD--LIFTDVPGRV--AKQLLQLAQRFGTQEGGALRVTHDLTQ 180 (227)
T ss_dssp EEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH--HHHSCHHHHH--HHHHHHHHHHHEEEETTEEEEECCCCH
T ss_pred EEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHH--HHHHHHHHHHhCCcCCCceEEcCCCCH
Confidence 8888888775443332222 222222222222 2234445553 3344455544321 11 013
Q ss_pred HHHHHHHhcCchhhhchHHhhc
Q psy11552 532 ALFAVLMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 532 s~~aI~~gL~~~~V~RLk~Tw~ 553 (714)
.-.|=+.|++-..|+|.-+.|.
T Consensus 181 ~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 181 EEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHH
Confidence 4556666777777777655544
No 72
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=97.49 E-value=6.6e-05 Score=68.38 Aligned_cols=73 Identities=18% Similarity=0.346 Sum_probs=57.2
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----cee---eeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCC
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGC---VTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGP 465 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~---v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p 465 (714)
|+++|++++.+|+|.+|.+++.... ... +..+++|+.||+.+++.+.|+. .++.+ .++
T Consensus 40 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~--------------~~~~a-~~~ 104 (142)
T 3mdp_A 40 IFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYT--------------SSARA-TKP 104 (142)
T ss_dssp EECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCS--------------SEEEE-SSC
T ss_pred EEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCce--------------EEEEE-CCc
Confidence 7899999999999999999998632 233 6788999999999999887776 67777 566
Q ss_pred ceeeeecCCcccccc
Q psy11552 466 RRYKFRGPNRFQQIT 480 (714)
Q Consensus 466 ~~~~~l~r~~f~~~t 480 (714)
+.++.++++.+....
T Consensus 105 ~~~~~i~~~~~~~l~ 119 (142)
T 3mdp_A 105 VRVVDINGARLREMS 119 (142)
T ss_dssp EEEEEEEHHHHHHHH
T ss_pred EEEEEEeHHHHHHHH
Confidence 777778777665433
No 73
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=97.48 E-value=6.5e-05 Score=70.06 Aligned_cols=72 Identities=33% Similarity=0.517 Sum_probs=59.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG 472 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~ 472 (714)
|+++|+.++.+|+|++|.+++..++ ..+..+++|+.||+.+++.+.|+. .++.+ .+++.++.++
T Consensus 72 i~~~G~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fGe~~~~~~~~~~--------------~~v~A-~~~~~~~~i~ 135 (154)
T 3pna_A 72 VIQQGDEGDNFYVIDQGEMDVYVNN-EWATSVGEGGSFGELALIYGTPRA--------------ATVKA-KTNVKLWGID 135 (154)
T ss_dssp EECTTSCCCEEEEEEESCEEEEETT-EEEEEECTTCEECCHHHHHCCCCS--------------SEEEE-SSCEEEEEEE
T ss_pred EEeCCCCCCeEEEEEecEEEEEECC-EEEEEecCCCEeeehHhhcCCCcc--------------eEEEE-CcceEEEEEe
Confidence 7899999999999999999999855 567789999999999999988876 67777 5667777787
Q ss_pred CCcccccc
Q psy11552 473 PNRFQQIT 480 (714)
Q Consensus 473 r~~f~~~t 480 (714)
+..|....
T Consensus 136 ~~~~~~ll 143 (154)
T 3pna_A 136 RDSYRRIL 143 (154)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77665543
No 74
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=97.45 E-value=0.00025 Score=70.61 Aligned_cols=142 Identities=14% Similarity=0.145 Sum_probs=87.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++++.+|+|.+|.+++... + ...+..+++|+.||+.+++.+.|+. .++.+ .+++.+
T Consensus 44 i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~--------------~~~~A-~~~~~v 108 (232)
T 2gau_A 44 VFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCS--------------STAIA-VENSKV 108 (232)
T ss_dssp EECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCS--------------SEEEE-SSCEEE
T ss_pred EEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcc--------------eEEEE-ecceEE
Confidence 789999999999999999999863 2 3456788999999999999987776 67777 567777
Q ss_pred eeecCCccccccchhhhhh--------hhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh------c--CChHH
Q psy11552 469 KFRGPNRFQQITANLDVFL--------RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE------Y--RNINA 532 (714)
Q Consensus 469 ~~l~r~~f~~~tpnI~~~i--------~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~------l--~Nf~s 532 (714)
+.+++..+......-..+. ++......++.. +...++.+| +...++.++...-. + .==+.
T Consensus 109 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~--l~~~~~~~R--l~~~L~~l~~~~~~~~~~~~~~~~~t~~ 184 (232)
T 2gau_A 109 LAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVT--LTQKHVRGR--LAETLLILKENFGFENDGATLSIYLSRE 184 (232)
T ss_dssp EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH--HHHSCHHHH--HHHHHHHHHHHHCBCTTSSBBSCCCCHH
T ss_pred EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHH--HHHHHHHHHHHcCCCCCCcEEEcccCHH
Confidence 8888887765443222222 222222333222 223444444 33344466554321 1 11134
Q ss_pred HHHHHHhcCchhhhchHHhhc
Q psy11552 533 LFAVLMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 533 ~~aI~~gL~~~~V~RLk~Tw~ 553 (714)
-.|=+.|++-..|.|.-+.|+
T Consensus 185 ~lA~~lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 185 ELATLSNMTVSNAIRTLSTFV 205 (232)
T ss_dssp HHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 455566666667777544443
No 75
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=97.40 E-value=0.00012 Score=68.30 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=63.9
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcC--CchhHHHHHHhhhheeeeeccccccCCceeee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNN--APSYQLHMYLEQMAVYFTTTAPDIKGPRRYKF 470 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~--~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~ 470 (714)
|+++|++++.+|+|.+|.+++...+ ..+..+++|+.||+.+++.. .|+. .++.+ .+++..+.
T Consensus 61 i~~~g~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fG~~~~~~~~~~~~~--------------~~~~a-~~~~~v~~ 124 (160)
T 4f8a_A 61 IYHAGESVDSLCFVVSGSLEVIQDD-EVVAILGKGDVFGDVFWKEATLAQSC--------------ANVRA-LTYCDLHV 124 (160)
T ss_dssp EECTTSBCCEEEEEEESEEEEEETT-EEEEEEETTCEEECCTTTCSSCCBCS--------------SEEEE-SSCEEEEE
T ss_pred EEeCCCCccEEEEEEeeEEEEEECC-EEEEEecCCCEeCcHHHhcCcccceE--------------EEEEE-CCceEEEE
Confidence 7899999999999999999998754 56778999999999999988 4665 66777 56677777
Q ss_pred ecCCccccccchhhhhhhhhhhHHHhHhhh
Q psy11552 471 RGPNRFQQITANLDVFLRRFNEIQYWVITE 500 (714)
Q Consensus 471 l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~ 500 (714)
++++.+.. +++.+..+..++...
T Consensus 125 i~~~~~~~-------l~~~~p~~~~~~~~~ 147 (160)
T 4f8a_A 125 IKRDALQK-------VLEFYTAFSHSFSRN 147 (160)
T ss_dssp EEHHHHHH-------HHHHCHHHHHHHHHH
T ss_pred EcHHHHHH-------HHHHHHHHHHHHHHH
Confidence 77765544 344444444444443
No 76
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=97.40 E-value=0.00049 Score=67.50 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=59.7
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
++++|++++.+|+|.+|.+++... + ...+..+++|+.||+.+++.+.|+. .++.+ .+++.+
T Consensus 33 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~--------------~~~~a-~~~~~v 97 (216)
T 4ev0_A 33 IFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERS--------------ASAVA-VEDTEL 97 (216)
T ss_dssp EECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCS--------------SEEEE-SSSEEE
T ss_pred EEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcc--------------eEEEE-cCCEEE
Confidence 789999999999999999999874 2 2356688999999999999988776 67777 566777
Q ss_pred eeecCCcccccc
Q psy11552 469 KFRGPNRFQQIT 480 (714)
Q Consensus 469 ~~l~r~~f~~~t 480 (714)
+.++++.+....
T Consensus 98 ~~i~~~~~~~l~ 109 (216)
T 4ev0_A 98 LALFREDYLALI 109 (216)
T ss_dssp EEEEHHHHHHHH
T ss_pred EEEcHHHHHHHH
Confidence 888888776544
No 77
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=97.39 E-value=0.00014 Score=66.64 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=58.0
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++.+.+|+|++|.+++... + ...+..+++|+.||+.+++.+.|+. .++.+ .+++.+
T Consensus 39 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~--------------~~~~a-~~~~~~ 103 (149)
T 2pqq_A 39 LFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRT--------------ATGTA-LTEVKL 103 (149)
T ss_dssp EECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECS--------------SEEEE-SSCEEE
T ss_pred EECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcc--------------eEEEE-ccceEE
Confidence 789999999999999999999873 2 2346688999999999999987776 66776 566777
Q ss_pred eeecCCccccc
Q psy11552 469 KFRGPNRFQQI 479 (714)
Q Consensus 469 ~~l~r~~f~~~ 479 (714)
+.+++..+...
T Consensus 104 ~~i~~~~~~~l 114 (149)
T 2pqq_A 104 LALGHGDLQPW 114 (149)
T ss_dssp EEEEGGGHHHH
T ss_pred EEEeHHHHHHH
Confidence 77887766543
No 78
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=97.38 E-value=0.00025 Score=70.91 Aligned_cols=77 Identities=8% Similarity=0.033 Sum_probs=61.1
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCc-hhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAP-SYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p-~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
|+++|++++.+|+|.+|.+++... + ...+..+++|+.||+.+++.+.+ +. .++.+ .+++.
T Consensus 54 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~--------------~~~~A-~~~~~ 118 (232)
T 1zyb_A 54 IIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYA--------------SSYVA-HTEVH 118 (232)
T ss_dssp EECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCS--------------SEEEE-SSCEE
T ss_pred EECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCc--------------eEEEE-ccceE
Confidence 789999999999999999999863 2 34566889999999999998877 55 67777 56777
Q ss_pred eeeecCCccccccchhh
Q psy11552 468 YKFRGPNRFQQITANLD 484 (714)
Q Consensus 468 ~~~l~r~~f~~~tpnI~ 484 (714)
++.+++..+........
T Consensus 119 v~~i~~~~~~~l~~~~p 135 (232)
T 1zyb_A 119 TVCISKAFVLSDLFRYD 135 (232)
T ss_dssp EEEEEHHHHHHTGGGSH
T ss_pred EEEEEHHHHHHHhccCH
Confidence 78888888776554433
No 79
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=97.38 E-value=0.00011 Score=68.88 Aligned_cols=73 Identities=30% Similarity=0.506 Sum_probs=58.7
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK 469 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~ 469 (714)
|+++|+.++.+|+|++|.+++.... ...+..+++|+.||+.+++.+.|+. .++.+ .+++.++
T Consensus 72 i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~--------------~~v~A-~~~~~~~ 136 (161)
T 3idb_B 72 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRA--------------ATITA-TSPGALW 136 (161)
T ss_dssp EECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCCCCS--------------SEEEE-SSSEEEE
T ss_pred EEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCCCcc--------------cEEEE-CCCeEEE
Confidence 7899999999999999999998732 2456688999999999999988877 67777 5667777
Q ss_pred eecCCcccccc
Q psy11552 470 FRGPNRFQQIT 480 (714)
Q Consensus 470 ~l~r~~f~~~t 480 (714)
.+++..+....
T Consensus 137 ~i~~~~~~~l~ 147 (161)
T 3idb_B 137 GLDRVTFRRII 147 (161)
T ss_dssp EEEHHHHHHHH
T ss_pred EEeHHHHHHHH
Confidence 77777665433
No 80
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=97.37 E-value=0.00038 Score=69.18 Aligned_cols=141 Identities=17% Similarity=0.136 Sum_probs=89.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+.|+. .++.+ .+++.+
T Consensus 40 i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~--------------~~~~a-~~~~~v 104 (231)
T 3e97_A 40 VVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERS--------------ASVRA-LTPVRT 104 (231)
T ss_dssp CCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCC--------------EEEEE-SSCEEE
T ss_pred EEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCce--------------EEEEE-CCcEEE
Confidence 7899999999999999999998733 2346688999999999999988776 67777 567778
Q ss_pred eeecCCccccccchhhhhh--------hhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh--------cCChHH
Q psy11552 469 KFRGPNRFQQITANLDVFL--------RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE--------YRNINA 532 (714)
Q Consensus 469 ~~l~r~~f~~~tpnI~~~i--------~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~--------l~Nf~s 532 (714)
+.+++..+......-..+. ++...+..++. ...+.. ..++...+...+...-. +.==..
T Consensus 105 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~----~~~~~~-~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~ 179 (231)
T 3e97_A 105 LMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI----AFGQNT-EAALTHVFANLYRQRLAAGVPQPEVLPLGTQ 179 (231)
T ss_dssp EEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----HHHHCH-HHHHHHHHHHHHHHHHHHTCSSTTEECCCHH
T ss_pred EEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----HhccCh-HHHHHHHHHHHHHhcCCCCCCceEecCCCHH
Confidence 8888888876443222222 22223333332 111222 03445555555544321 111245
Q ss_pred HHHHHHhcCchhhhchHHhhc
Q psy11552 533 LFAVLMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 533 ~~aI~~gL~~~~V~RLk~Tw~ 553 (714)
-.|=+.|++-..|+|.-+.|.
T Consensus 180 ~iA~~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 180 DIMARTSSSRETVSRVLKRLE 200 (231)
T ss_dssp HHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHH
Confidence 566677777777777655544
No 81
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=97.31 E-value=0.00022 Score=69.48 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=57.2
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC----chhHHHHHHhhhheeeeeccccccC
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA----PSYQLHMYLEQMAVYFTTTAPDIKG 464 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~----p~~~~~~~l~~~~ly~~itv~ei~~ 464 (714)
++++|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+. |+. .++.+ .+
T Consensus 24 i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~--------------~~~~A-~~ 88 (207)
T 2oz6_A 24 IIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERS--------------AWVRA-KV 88 (207)
T ss_dssp EECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCC--------------SEEEE-SS
T ss_pred EEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcc--------------eEEEE-CC
Confidence 7899999999999999999998632 2356688999999999999887 665 66777 56
Q ss_pred CceeeeecCCcccccc
Q psy11552 465 PRRYKFRGPNRFQQIT 480 (714)
Q Consensus 465 p~~~~~l~r~~f~~~t 480 (714)
++.++.+++..+....
T Consensus 89 ~~~v~~i~~~~~~~l~ 104 (207)
T 2oz6_A 89 ECEVAEISYAKFRELS 104 (207)
T ss_dssp CEEEEEEEHHHHHHHH
T ss_pred cEEEEEECHHHHHHHH
Confidence 7777888888776544
No 82
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=97.31 E-value=0.00012 Score=66.53 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=55.9
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG 472 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~ 472 (714)
|+++|++.+.+|+|.+|.+++.... ...+++|+.||+.+++.+.|+. .++.+ .+++.++.++
T Consensus 45 i~~~g~~~~~~y~i~~G~v~~~~~~---~~~~~~G~~~G~~~~~~~~~~~--------------~~~~a-~~~~~~~~i~ 106 (138)
T 1vp6_A 45 ICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGEPRS--------------ATVSA-ATTVSLLSLH 106 (138)
T ss_dssp EECTTSCCCEEEEEEESCEEECSSS---CEEECTTCEECHHHHHHCCCCS--------------SCEEE-SSSEEEEEEE
T ss_pred EEeCCCCcceEEEEEeeEEEEEeCC---cceECCCCEeeehHhccCCCce--------------eEEEE-CCCEEEEEEC
Confidence 7899999999999999999998755 3478999999999999988776 67777 5667777777
Q ss_pred CCcccc
Q psy11552 473 PNRFQQ 478 (714)
Q Consensus 473 r~~f~~ 478 (714)
+..+..
T Consensus 107 ~~~~~~ 112 (138)
T 1vp6_A 107 SADFQM 112 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766644
No 83
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=97.27 E-value=0.00021 Score=70.74 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=59.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCc-hhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAP-SYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p-~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
|+++|++++++|+|.+|.+++.... ...+..+++|+.||+.+++.+.| +. .++.+ .+++.
T Consensus 43 i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~ 107 (227)
T 3dkw_A 43 VFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYV--------------ATAQA-VVPSQ 107 (227)
T ss_dssp EECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTTCSBCS--------------SCEEE-SSCCE
T ss_pred EEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCCCCCCc--------------eEEEE-cCcEE
Confidence 7899999999999999999998632 23456888999999999998888 65 67777 56777
Q ss_pred eeeecCCccccccc
Q psy11552 468 YKFRGPNRFQQITA 481 (714)
Q Consensus 468 ~~~l~r~~f~~~tp 481 (714)
++.+++..|.....
T Consensus 108 v~~i~~~~~~~l~~ 121 (227)
T 3dkw_A 108 LFRFSNKAYLRQLQ 121 (227)
T ss_dssp EEEEESHHHHHHHS
T ss_pred EEEEeHHHHHHHHH
Confidence 78888888875443
No 84
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=97.26 E-value=0.00019 Score=66.20 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=56.0
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCc-hhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAP-SYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p-~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
|+++|++++.+|+|.+|.+++... + ...+..+++|+.||+.+++.+.+ +. .++.+ .+++.
T Consensus 46 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~ 110 (154)
T 2z69_A 46 VFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYV--------------ATAQA-VVPSQ 110 (154)
T ss_dssp EECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCS--------------SEEEE-SSSEE
T ss_pred EecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCc--------------eEEEE-ccceE
Confidence 789999999999999999999863 2 23466889999999999998877 65 66776 56677
Q ss_pred eeeecCCcccc
Q psy11552 468 YKFRGPNRFQQ 478 (714)
Q Consensus 468 ~~~l~r~~f~~ 478 (714)
++.+++..+..
T Consensus 111 ~~~i~~~~~~~ 121 (154)
T 2z69_A 111 LFRFSNKAYLR 121 (154)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEECHHHHHH
Confidence 77777766654
No 85
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=97.26 E-value=0.00023 Score=75.22 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=62.0
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK 469 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~ 469 (714)
|+++|+.++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+.|+. .++.+ .+++.+.
T Consensus 47 i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~~~~~~~--------------~~v~A-~~~~~~~ 111 (333)
T 4ava_A 47 LLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRS--------------ATVTT-IEPLTGW 111 (333)
T ss_dssp EECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHHHHTCBCS--------------SEEEE-SSCEEEE
T ss_pred EEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHhcCCCCce--------------EEEEE-ecCEEEE
Confidence 8899999999999999999998743 3367789999999999999998887 77877 6777888
Q ss_pred eecCCcccccc
Q psy11552 470 FRGPNRFQQIT 480 (714)
Q Consensus 470 ~l~r~~f~~~t 480 (714)
.++++.|....
T Consensus 112 ~i~~~~~~~l~ 122 (333)
T 4ava_A 112 TGGRGAFATMV 122 (333)
T ss_dssp EECHHHHHHHH
T ss_pred EEcHHHHHHHH
Confidence 88888776655
No 86
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=97.22 E-value=0.00063 Score=67.86 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=59.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+.|.. .++.+ .+++.+
T Consensus 45 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~--------------~~~~a-~~~~~v 109 (237)
T 3fx3_A 45 LFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYP--------------VSAEA-VTPCEV 109 (237)
T ss_dssp EECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCS--------------SEEEE-SSSEEE
T ss_pred EEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCC--------------ceEEE-CCceEE
Confidence 7899999999999999999998732 2356688999999999999887776 66777 567777
Q ss_pred eeecCCccccccc
Q psy11552 469 KFRGPNRFQQITA 481 (714)
Q Consensus 469 ~~l~r~~f~~~tp 481 (714)
..+++..|.....
T Consensus 110 ~~i~~~~~~~l~~ 122 (237)
T 3fx3_A 110 MHIPSPVFVSLMR 122 (237)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 8888888765443
No 87
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=97.16 E-value=0.00016 Score=70.01 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=57.0
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+.|+. .++.+ .+++.+
T Consensus 73 i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~--------------~~v~A-~~~~~v 137 (187)
T 3gyd_A 73 LLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRS--------------ASCVA-SLPTDF 137 (187)
T ss_dssp EECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCS--------------SEEEE-EEEEEE
T ss_pred EEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCee--------------EEEEE-CCCeEE
Confidence 8899999999999999999998743 2456688999999999999888776 66666 455666
Q ss_pred eeecCCcccc
Q psy11552 469 KFRGPNRFQQ 478 (714)
Q Consensus 469 ~~l~r~~f~~ 478 (714)
+.+++..+..
T Consensus 138 ~~i~~~~~~~ 147 (187)
T 3gyd_A 138 AVLSRDALYQ 147 (187)
T ss_dssp EEEEHHHHHH
T ss_pred EEEcHHHHHH
Confidence 7777766544
No 88
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.00018 Score=63.35 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhhccccccc
Q psy11552 96 RQITTGMWQALLEEGVIYHG 115 (714)
Q Consensus 96 ~~~a~~~~~~l~~~g~~~hv 115 (714)
|++|+.+||.|||.|+|+||
T Consensus 66 R~eAv~lgq~Ll~~gvi~hV 85 (105)
T 2ysr_A 66 RQQTIQLLRKFLKNHVIEDI 85 (105)
T ss_dssp HHHHHHHHHHHHHTTSSEES
T ss_pred HHHHHHHHHHHHHCCCeEec
Confidence 78999999999999999999
No 89
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=97.15 E-value=0.00041 Score=68.33 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=58.2
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
|+++|++++.+|+|.+|.+++... + ...+..+++|+.||+.+++.+. |.. .++.+ .+++.
T Consensus 33 i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~--------------~~~~A-~~~~~ 97 (213)
T 1o5l_A 33 VKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFP--------------VNVVA-GENSK 97 (213)
T ss_dssp EECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCS--------------SEEEE-SSSEE
T ss_pred EEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCce--------------EEEEE-ccceE
Confidence 789999999999999999999863 2 2346688999999999988776 665 66777 56677
Q ss_pred eeeecCCcccccc
Q psy11552 468 YKFRGPNRFQQIT 480 (714)
Q Consensus 468 ~~~l~r~~f~~~t 480 (714)
++.++++.+....
T Consensus 98 v~~i~~~~~~~l~ 110 (213)
T 1o5l_A 98 ILSIPKEVFLDLL 110 (213)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEeHHHHHHHH
Confidence 7788888776544
No 90
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=97.14 E-value=0.00087 Score=65.33 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=58.6
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
|+++|++++++|+|.+|.+++.... ...+..+++|+.||+.+++... |+. .++.+ .+++.
T Consensus 30 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~ 94 (210)
T 3ryp_A 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS--------------AWVRA-KTACE 94 (210)
T ss_dssp EECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCS--------------SEEEE-SSCEE
T ss_pred EECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCce--------------EEEEE-CCcEE
Confidence 7899999999999999999998742 2346688999999999999887 665 66776 56777
Q ss_pred eeeecCCcccccc
Q psy11552 468 YKFRGPNRFQQIT 480 (714)
Q Consensus 468 ~~~l~r~~f~~~t 480 (714)
+..+++..+....
T Consensus 95 v~~i~~~~~~~l~ 107 (210)
T 3ryp_A 95 VAEISYKKFRQLI 107 (210)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEcHHHHHHHH
Confidence 7788888776544
No 91
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=97.13 E-value=0.0002 Score=63.12 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhhccccccc--------------------ceeeEeecCCC
Q psy11552 96 RQITTGMWQALLEEGVIYHG--------------------KISCFFFSETE 126 (714)
Q Consensus 96 ~~~a~~~~~~l~~~g~~~hv--------------------~~~y~f~~~~~ 126 (714)
|+||+.+||.||+.|+|+|| .+||||..+..
T Consensus 56 R~EAv~lgq~Ll~~G~i~hV~d~~~~~~~~~~~~~F~D~~~~lYrF~~~~~ 106 (109)
T 1uhw_A 56 RQEGLMISASLLSEGYLQPAGDLSKNAADGIAENPFLDSPDAFYYFPDSGP 106 (109)
T ss_dssp HHHHHHHHHHHHHHTSSEECSSSHHHHHHHSSSCCCCCCSSCCEECTTSSS
T ss_pred HHHHHHHHHHHHHCCeEEeCccccccccccccccceecCCCcEEEEcCCCC
Confidence 78999999999999999999 37888876653
No 92
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=97.12 E-value=0.00085 Score=68.38 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=59.1
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+. |+. .++.+ .+++.
T Consensus 80 i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~--------------~~~~A-~~~~~ 144 (260)
T 3kcc_A 80 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS--------------AWVRA-KTACE 144 (260)
T ss_dssp EECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC--------------SEEEE-SSCEE
T ss_pred EECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc--------------eEEEE-CCCeE
Confidence 7899999999999999999998732 2346688999999999999887 665 67777 56777
Q ss_pred eeeecCCcccccc
Q psy11552 468 YKFRGPNRFQQIT 480 (714)
Q Consensus 468 ~~~l~r~~f~~~t 480 (714)
++.++++.|....
T Consensus 145 l~~i~~~~~~~l~ 157 (260)
T 3kcc_A 145 VAEISYKKFRQLI 157 (260)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEcHHHHHHHH
Confidence 7888888776544
No 93
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=97.10 E-value=0.0014 Score=64.40 Aligned_cols=142 Identities=10% Similarity=0.154 Sum_probs=86.7
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCc--cchhhhhcCCchhHHHHHHhhhheeeeeccccccCCc
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGED--FGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPR 466 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~--fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~ 466 (714)
++++|++++++|+|.+|.+++.... ...+..+++||. ||+.+++...|.. .++.+ .+++
T Consensus 37 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~--------------~~~~a-~~~~ 101 (220)
T 3dv8_A 37 IHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFE--------------VTIEA-EKDT 101 (220)
T ss_dssp EEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCC--------------CEEEE-SSCE
T ss_pred EECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCc--------------eEEEE-eeee
Confidence 7899999999999999999998732 234568889999 8999999988876 67777 5677
Q ss_pred eeeeecCCccccccchhhhhhhh--------hhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHh--hcCChHHHHHH
Q psy11552 467 RYKFRGPNRFQQITANLDVFLRR--------FNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCK--EYRNINALFAV 536 (714)
Q Consensus 467 ~~~~l~r~~f~~~tpnI~~~i~~--------fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~--~l~Nf~s~~aI 536 (714)
..+.+++..+.........+... ......++. .+...+..+| +...+...+.... .+.==..-.|=
T Consensus 102 ~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~R--l~~~L~~~~~~~~~~~~~~t~~~lA~ 177 (220)
T 3dv8_A 102 DLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIE--QIMWKSLDKR--VASFLLEETSIEGTNELKITHETIAN 177 (220)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHH--HHHHHHHHHHHHTSSEECCCHHHHHH
T ss_pred EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHH--HHHHHHHhhhhcCCceecCCHHHHHH
Confidence 77888888876544333222222 222222222 1223344444 3333444443321 01111345566
Q ss_pred HHhcCchhhhchHHhhc
Q psy11552 537 LMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 537 ~~gL~~~~V~RLk~Tw~ 553 (714)
+.|++-..|+|.-+.|+
T Consensus 178 ~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 178 HLGSHREVITRMLRYFQ 194 (220)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHH
Confidence 66777777777654443
No 94
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=97.09 E-value=0.00035 Score=67.46 Aligned_cols=73 Identities=8% Similarity=0.088 Sum_probs=58.3
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchh-hhhcCCchhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKL-ALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~-~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
++++|++++.+|+|.+|.+++... + ...+..+++||.|||. +|+.+.|.. .++.+ .+++.
T Consensus 41 l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~--------------~~~~a-~~~~~ 105 (194)
T 3dn7_A 41 LLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPAD--------------FYIQS-VENCE 105 (194)
T ss_dssp EECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCS--------------SEEEE-SSCEE
T ss_pred EECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCc--------------eEEEE-ECCEE
Confidence 789999999999999999999873 2 2345578899999987 788887776 67777 56777
Q ss_pred eeeecCCcccccc
Q psy11552 468 YKFRGPNRFQQIT 480 (714)
Q Consensus 468 ~~~l~r~~f~~~t 480 (714)
+..+++..+....
T Consensus 106 v~~i~~~~~~~l~ 118 (194)
T 3dn7_A 106 LLSITYTEQENLF 118 (194)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEeHHHHHHHH
Confidence 7788887776543
No 95
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=97.06 E-value=0.0017 Score=65.26 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=87.5
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+.+|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++...|.. ...++.+ .+++.+
T Consensus 54 i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~------------~~~~~~A-~~~~~v 120 (243)
T 3la7_A 54 IFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSD------------RFYHAVA-FTPVEL 120 (243)
T ss_dssp EECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSB------------CCEEEEE-SSSEEE
T ss_pred EEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCc------------ceEEEEE-ccceEE
Confidence 7899999999999999999998732 2346688999999999999887531 0045555 456677
Q ss_pred eeecCCccccccchhhhhhhhh--------hhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh---------cCChH
Q psy11552 469 KFRGPNRFQQITANLDVFLRRF--------NEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE---------YRNIN 531 (714)
Q Consensus 469 ~~l~r~~f~~~tpnI~~~i~~f--------n~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~---------l~Nf~ 531 (714)
..+++..+......-..+...+ .....++. .+...+..+| +...++..+...-. +.==.
T Consensus 121 ~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~--~l~~~~~~~R--la~~L~~l~~~~g~~~~~~~~i~~~lt~ 196 (243)
T 3la7_A 121 LSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIE--TLAHRDMGSR--LVSFLLILCRDFGVPCADGITIDLKLSH 196 (243)
T ss_dssp EEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH--HHHCSSHHHH--HHHHHHHHHHHHEEECSSSEEECSCCCH
T ss_pred EEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHH--HHHHHHHHHHHhCCCCCCCeEEeccCCH
Confidence 7888887765443332222221 11111211 2223444444 44455555554321 11114
Q ss_pred HHHHHHHhcCchhhhchHHhhc
Q psy11552 532 ALFAVLMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 532 s~~aI~~gL~~~~V~RLk~Tw~ 553 (714)
.-.|=+.|++-..|.|.-+.|.
T Consensus 197 ~~lA~~lG~sr~tvsR~l~~L~ 218 (243)
T 3la7_A 197 QAIAEAIGSTRVTVTRLLGDLR 218 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHH
Confidence 5666677777778887655544
No 96
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=97.05 E-value=0.00013 Score=66.23 Aligned_cols=72 Identities=18% Similarity=0.395 Sum_probs=56.3
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeecc-ccccCCceeeee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTA-PDIKGPRRYKFR 471 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv-~ei~~p~~~~~l 471 (714)
|+++|+.++.+|+|++|.+++....... ..+++|+.||+.+++.+.++. .++ .+ .+++.++.+
T Consensus 51 i~~~g~~~~~~y~i~~G~v~~~~~~g~~-~~l~~G~~fG~~~~~~~~~~~--------------~~~~~a-~~~~~~~~i 114 (134)
T 2d93_A 51 ILEDGQELDSWYVILNGTVEISHPDGKV-ENLFMGNSFGITPTLDKQYMH--------------GIVRTK-VDDCQFVCI 114 (134)
T ss_dssp EECTTCEECEEEECCBSCEEEECSSSCE-EEECTTCEESCCSSSCCEECC--------------SEEEES-SSSEEEEEE
T ss_pred EEeCCCCCCeEEEEEeCEEEEEcCCCcE-EEecCCCccChhHhcCCCcce--------------eEEEEE-ecceEEEEE
Confidence 7899999999999999999998743333 678999999999999987775 455 55 556677777
Q ss_pred cCCcccccc
Q psy11552 472 GPNRFQQIT 480 (714)
Q Consensus 472 ~r~~f~~~t 480 (714)
++..+....
T Consensus 115 ~~~~~~~l~ 123 (134)
T 2d93_A 115 AQQDYWRIL 123 (134)
T ss_dssp EHHHHHHHS
T ss_pred eHHHHHHHH
Confidence 776665433
No 97
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=97.05 E-value=0.0011 Score=64.51 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=83.6
Q ss_pred ccccCCCC--ceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCc
Q psy11552 393 VFHQGDEG--KSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPR 466 (714)
Q Consensus 393 i~~~g~~~--~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~ 466 (714)
|+++|+++ +.+|+|.+|.+.+... + ...+..+++|+.||+ +++...|.. .++.+ .+++
T Consensus 16 i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~--------------~~~~A-~~~~ 79 (202)
T 2zcw_A 16 ILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERI--------------YFAEA-ATDV 79 (202)
T ss_dssp EECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBC--------------SEEEE-SSCE
T ss_pred EECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcc--------------eEEEE-cccE
Confidence 78899999 9999999999999863 2 234568899999999 888877766 56666 4566
Q ss_pred eeeeecCCccccccchhhh-----hhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh--------cCChHHH
Q psy11552 467 RYKFRGPNRFQQITANLDV-----FLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE--------YRNINAL 533 (714)
Q Consensus 467 ~~~~l~r~~f~~~tpnI~~-----~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~--------l~Nf~s~ 533 (714)
.+..+ +..|. |.+.. +..+......|+... ...+..+|. ...++..+...-. +.==..-
T Consensus 80 ~v~~i-~~~~~---p~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~Rl--~~~L~~l~~~~~~~~~~~~~~~~~t~~~ 151 (202)
T 2zcw_A 80 RLEPL-PENPD---PELLKDLAQHLSQGLAEAYRRIERL--ATQRLKNRM--AAALLELSETPLAHEEEGKVVLKATHDE 151 (202)
T ss_dssp EEEEC-CSSCC---HHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHH--HHHHHHHTTSTTEEEETTEEEEECCHHH
T ss_pred EEEEE-hHhcC---HHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHH--HHHHHHHHHhcCCCCCCcEEccCCCHHH
Confidence 67777 77776 43321 123333334443332 234444443 3334444332110 1111345
Q ss_pred HHHHHhcCchhhhchHHhhc
Q psy11552 534 FAVLMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 534 ~aI~~gL~~~~V~RLk~Tw~ 553 (714)
.|=+.|++-..|.|.-+.|.
T Consensus 152 lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 152 LAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp HHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 66667777777777655444
No 98
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=97.04 E-value=0.0013 Score=65.06 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=57.6
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR 467 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~ 467 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+.+++.+. |.. .++.+ .+++.
T Consensus 45 i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~ 109 (230)
T 3iwz_A 45 VFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTRE--------------VILRT-RTQCE 109 (230)
T ss_dssp EECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCC--------------SEEEE-SSCEE
T ss_pred EECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCce--------------eEEEE-cCcEE
Confidence 8899999999999999999998732 2356688999999999998875 554 56666 56667
Q ss_pred eeeecCCcccccc
Q psy11552 468 YKFRGPNRFQQIT 480 (714)
Q Consensus 468 ~~~l~r~~f~~~t 480 (714)
...+++..+....
T Consensus 110 v~~i~~~~~~~l~ 122 (230)
T 3iwz_A 110 LAEISYERLQQLF 122 (230)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEeHHHHHHHH
Confidence 7778887776544
No 99
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=96.93 E-value=0.0021 Score=64.35 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=52.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEee---cce-eeeeecCCCccchhhhhcCCch--hHHHHHHhhhheeeeeccccccCCc
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY---GKG-CVTSLYAGEDFGKLALVNNAPS--YQLHMYLEQMAVYFTTTAPDIKGPR 466 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~---~~~-~v~~l~~gd~fge~~~L~~~p~--~~~~~~l~~~~ly~~itv~ei~~p~ 466 (714)
|+++|++++.+|+|.+|.+++... +.. .+..+ +|+.||+.+++...++ . .++.++.+++
T Consensus 29 i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~--------------~~~~a~~~~~ 93 (238)
T 2bgc_A 29 IFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGY--------------YNLEVISEQA 93 (238)
T ss_dssp EECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCC--------------CEEEECSSEE
T ss_pred EEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcc--------------eeEEEEEcce
Confidence 789999999999999999999873 233 34455 9999999999988753 2 2333321245
Q ss_pred eeeeecCCcccccc
Q psy11552 467 RYKFRGPNRFQQIT 480 (714)
Q Consensus 467 ~~~~l~r~~f~~~t 480 (714)
.+..+++..|....
T Consensus 94 ~v~~i~~~~~~~l~ 107 (238)
T 2bgc_A 94 TAYVIKINELKELL 107 (238)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred EEEEEeHHHHHHHH
Confidence 67778887776544
No 100
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=96.91 E-value=0.0036 Score=63.02 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=86.3
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY 468 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~ 468 (714)
|+++|++++.+|+|.+|.+++.... ...+..+++|+.||+ ++... .. .++.+ .+++.+
T Consensus 43 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~-~~--------------~~~~A-~~~~~v 104 (250)
T 3e6c_C 43 VIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTG-NN--------------IYATA-MEPTRT 104 (250)
T ss_dssp EECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSCCS-CC--------------EEEEE-SSSEEE
T ss_pred EECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecCCC-Cc--------------eEEEE-cccEEE
Confidence 8899999999999999999998732 234668899999999 56555 54 66777 567777
Q ss_pred eeecCCccccccchhhhh--------hhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh---------cCChH
Q psy11552 469 KFRGPNRFQQITANLDVF--------LRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE---------YRNIN 531 (714)
Q Consensus 469 ~~l~r~~f~~~tpnI~~~--------i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~---------l~Nf~ 531 (714)
..+++..+......-..+ ..+......++.. +...+..+| +...+..++...-. +.==.
T Consensus 105 ~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~R--l~~~L~~l~~~~~~~~~~~~~i~~~~t~ 180 (250)
T 3e6c_C 105 CWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAE--MNTYNPTIR--ILRLFYELCSSQGKRVGDTYEITMPLSQ 180 (250)
T ss_dssp EEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHH--HTTSCHHHH--HHHHHHHHHHHHCEEETTEEEEECCCCH
T ss_pred EEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHH--HHHHHHHHHHHhCCCCCCCcEecCCCCH
Confidence 888888876544322222 2223333333322 223444444 44555555554321 11123
Q ss_pred HHHHHHHhcCchhhhchHHhhc
Q psy11552 532 ALFAVLMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 532 s~~aI~~gL~~~~V~RLk~Tw~ 553 (714)
.-.|=+.|++-..|.|.-+.|.
T Consensus 181 ~~iA~~lG~sr~tvsR~l~~L~ 202 (250)
T 3e6c_C 181 KSIGEITGVHHVTVSRVLASLK 202 (250)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHH
Confidence 4466667777778888655554
No 101
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=96.81 E-value=0.00059 Score=61.46 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhcccccccc
Q psy11552 96 RQITTGMWQALLEEGVIYHGK 116 (714)
Q Consensus 96 ~~~a~~~~~~l~~~g~~~hv~ 116 (714)
|++|+.+||.||+.|+|+||.
T Consensus 56 R~eAv~lgq~Ll~~G~i~hV~ 76 (120)
T 1v3f_A 56 RLEAVTLASMLMEENFLRPVG 76 (120)
T ss_dssp HHHHHHHHHHHHHHTSEEECS
T ss_pred HHHHHHHHHHHHHCCCeEEcc
Confidence 679999999999999999995
No 102
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=96.79 E-value=0.00063 Score=61.58 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhhccccccc--------------------ceeeEeecC
Q psy11552 96 RQITTGMWQALLEEGVIYHG--------------------KISCFFFSE 124 (714)
Q Consensus 96 ~~~a~~~~~~l~~~g~~~hv--------------------~~~y~f~~~ 124 (714)
|+||+.+||.||+.|+|+|| ..||||..+
T Consensus 66 R~EAv~lg~~Ll~~G~i~hV~d~s~~~~~~~~~~~f~dd~~~lYrF~~~ 114 (127)
T 2cso_A 66 RQEGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDS 114 (127)
T ss_dssp HHHHHHHHHHHHHHTSSEEESHHHHHHHHSSCSCCCCCCTTCEEECSSS
T ss_pred HHHHHHHHHHHHHCCeEEeCccccccccccccccceecCCCcEEEecCC
Confidence 68999999999999999999 478999754
No 103
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=96.77 E-value=0.00046 Score=62.47 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=52.8
Q ss_pred ccccCCCCceEEEEEeCeEEEEeec--c-eeee--eecCCCccchhhh---hcCCchhHHHHHHhhhheeeeeccccccC
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYG--K-GCVT--SLYAGEDFGKLAL---VNNAPSYQLHMYLEQMAVYFTTTAPDIKG 464 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~--~-~~v~--~l~~gd~fge~~~---L~~~p~~~~~~~l~~~~ly~~itv~ei~~ 464 (714)
|+++|+.++.+|+|++|.+++.... . ..+. .+++|+.||+.++ +...|+.. + --...++.+ .+
T Consensus 40 i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~-------~-~~~~~~~~A-~~ 110 (137)
T 1wgp_A 40 LVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSN-------L-PSSTRTVKA-LT 110 (137)
T ss_dssp EECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSS-------S-CBCSSEEEE-SS
T ss_pred EEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhccccccc-------c-ccceeEEEE-eE
Confidence 7899999999999999999965322 1 2233 8899999999996 77765210 0 000156666 55
Q ss_pred CceeeeecCCcccc
Q psy11552 465 PRRYKFRGPNRFQQ 478 (714)
Q Consensus 465 p~~~~~l~r~~f~~ 478 (714)
++.++.++++.+..
T Consensus 111 ~~~~~~i~~~~~~~ 124 (137)
T 1wgp_A 111 EVEAFALIADELKF 124 (137)
T ss_dssp CBEEEEEEHHHHHH
T ss_pred EEEEEEECHHHHHH
Confidence 66777777766654
No 104
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=96.64 E-value=0.00077 Score=59.22 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhhccccccc--------ceeeEee
Q psy11552 96 RQITTGMWQALLEEGVIYHG--------KISCFFF 122 (714)
Q Consensus 96 ~~~a~~~~~~l~~~g~~~hv--------~~~y~f~ 122 (714)
|++|+.+||.|++.|+|+|| ..||+|.
T Consensus 70 r~eAv~lg~~Ll~~G~I~hv~~~~~F~D~~~y~f~ 104 (105)
T 1fsh_A 70 RREARKYASSMLKHGFLRHTVNKITFSEQCYYVFG 104 (105)
T ss_dssp HHHHHHHHHHHHHTTTEECSSSSCCCCSSSCCEEC
T ss_pred HHHHHHHHHHHHHCCcEEEcCCCCcccCCCeeecC
Confidence 68999999999999999999 5667774
No 105
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=96.54 E-value=0.0072 Score=59.35 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=78.9
Q ss_pred ccccCCCCceEEEEEeCeEEEEee--c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY--G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK 469 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~--~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~ 469 (714)
|+++|++++.+|+|.+|.+++... + ...+..+++|+.||+ |+. .++.+ .+++.++
T Consensus 38 i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-------~~~--------------~~~~A-~~~~~v~ 95 (220)
T 2fmy_A 38 LYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-------HTR--------------AFIQA-MEDTTIL 95 (220)
T ss_dssp EECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES-------CSS--------------SEEEE-SSSEEEE
T ss_pred EECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC-------ccc--------------eEEEE-cCcEEEE
Confidence 789999999999999999999532 2 234568889999999 444 56666 5667777
Q ss_pred eecCCccccccchhhhh--------hhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh---------cCChHH
Q psy11552 470 FRGPNRFQQITANLDVF--------LRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE---------YRNINA 532 (714)
Q Consensus 470 ~l~r~~f~~~tpnI~~~--------i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~---------l~Nf~s 532 (714)
.+++..+......-..+ ..+......++... ...+..+| +...+...+...-. +.==..
T Consensus 96 ~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~R--l~~~L~~l~~~~g~~~~~~~~~~~~~t~~ 171 (220)
T 2fmy_A 96 YTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGL--VFKDARLR--LAEFLVQAAMDTGLKVPQGIKLELGLNTE 171 (220)
T ss_dssp EEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHH--HHHHHHHHHHHHCEEETTEEEEECSSCHH
T ss_pred EEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHH--HHHHHHHHHHHhCCCCCCcEEEeccCCHH
Confidence 88887776543222221 12222222222221 12233333 34445555544321 111245
Q ss_pred HHHHHHhcCchhhhchHHhhc
Q psy11552 533 LFAVLMGLSNVAVSRLSLTWD 553 (714)
Q Consensus 533 ~~aI~~gL~~~~V~RLk~Tw~ 553 (714)
-.|=+.|++-..|+|.-+.|.
T Consensus 172 ~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 172 EIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHH
Confidence 566667777777777655543
No 106
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=96.23 E-value=0.0017 Score=75.87 Aligned_cols=120 Identities=53% Similarity=0.904 Sum_probs=97.0
Q ss_pred CCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEe
Q psy11552 290 PLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSL 369 (714)
Q Consensus 290 ~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l 369 (714)
+..++.++++.+.+.|.++++|++|+++++..|+......+++++|++
T Consensus 19 p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~-------------------------------- 66 (694)
T 3cf6_E 19 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTV-------------------------------- 66 (694)
T ss_dssp GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCE--------------------------------
T ss_pred hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCE--------------------------------
Confidence 788999999999999999999999999999999994322567877763
Q ss_pred cCCCccchhhhccCCCcceeeecccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHh
Q psy11552 370 YAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLE 449 (714)
Q Consensus 370 ~~Gd~FGElaLl~~~pr~atv~Ai~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~ 449 (714)
|+++|+.++.+|+|++|.+++...+...+..+++||.||+.+++.+.|+.
T Consensus 67 -----------------------I~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l~~Gd~fGe~al~~~~~~~------- 116 (694)
T 3cf6_E 67 -----------------------LFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRA------- 116 (694)
T ss_dssp -----------------------EECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECHHHHHHTCBCS-------
T ss_pred -----------------------EECCCCcCCeEEEEEEEEEEEEEeCCEEEEEeCCCCEeehHHHhCCCCce-------
Confidence 67889999999999999999998765677789999999999999887776
Q ss_pred hhheeeeeccccccCCceeeeecCCcccc
Q psy11552 450 QMAVYFTTTAPDIKGPRRYKFRGPNRFQQ 478 (714)
Q Consensus 450 ~~~ly~~itv~ei~~p~~~~~l~r~~f~~ 478 (714)
+++.++..++.++.+++..|..
T Consensus 117 -------~tv~A~edd~~ll~I~~~~f~~ 138 (694)
T 3cf6_E 117 -------ASIVLREDNCHFLRVDKEDFNR 138 (694)
T ss_dssp -------SEEEECSSSEEEEEEEHHHHHH
T ss_pred -------EEEEEeeCceEEEEEeHHHHHH
Confidence 5666632135555666655543
No 107
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=95.92 E-value=0.0013 Score=70.47 Aligned_cols=72 Identities=22% Similarity=0.378 Sum_probs=0.0
Q ss_pred ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG 472 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~ 472 (714)
++++|++++.+|+|.+|.+++.... ...+++||.|||.+++.+.|+. .++.+ .+++....++
T Consensus 262 I~~~G~~~~~ly~I~~G~v~v~~~~---~~~l~~G~~fGe~~~l~~~~~~--------------~~~~A-~~~~~l~~i~ 323 (355)
T 3beh_A 262 ICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGEPRS--------------ATVSA-ATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCCcCceEEEEEeeEEEEEECC---eeEECCCCEEeehHHhCCCCcc--------------eEEEE-CccEEEEEEe
Confidence 7889999999999999999998765 3478999999999999998876 56666 5566667777
Q ss_pred CCccccccch
Q psy11552 473 PNRFQQITAN 482 (714)
Q Consensus 473 r~~f~~~tpn 482 (714)
++++.+....
T Consensus 324 ~~~f~~ll~~ 333 (355)
T 3beh_A 324 SADFQMLCSS 333 (355)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 7777654433
No 108
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=95.54 E-value=0.027 Score=55.32 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=50.1
Q ss_pred ccccCCCCceEEEEEeCeEEEEee--c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552 393 VFHQGDEGKSWYIIIQGSVDVVIY--G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK 469 (714)
Q Consensus 393 i~~~g~~~~~~YiI~~G~~~~~~~--~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~ 469 (714)
|+++|++++.+|+|.+|.+++... + ...+..+++|+.|| .|+. .++.+ .+++.++
T Consensus 34 i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-------~~~~--------------~~~~A-~~~~~v~ 91 (222)
T 1ft9_A 34 VCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-------MHSG--------------CLVEA-TERTEVR 91 (222)
T ss_dssp EECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-------SCSS--------------CEEEE-SSCEEEE
T ss_pred EECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-------CCCC--------------EEEEE-ccceEEE
Confidence 789999999999999999999532 2 23456888999999 3444 56666 5667778
Q ss_pred eecCCcccccc
Q psy11552 470 FRGPNRFQQIT 480 (714)
Q Consensus 470 ~l~r~~f~~~t 480 (714)
.+++..|....
T Consensus 92 ~i~~~~~~~l~ 102 (222)
T 1ft9_A 92 FADIRTFEQKL 102 (222)
T ss_dssp EECHHHHHHHH
T ss_pred EEeHHHHHHHH
Confidence 88888776543
No 109
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=94.91 E-value=0.012 Score=63.60 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhhccccccc--------ceeeEeecCCCCchh
Q psy11552 96 RQITTGMWQALLEEGVIYHG--------KISCFFFSETETIPM 130 (714)
Q Consensus 96 ~~~a~~~~~~l~~~g~~~hv--------~~~y~f~~~~~~~~~ 130 (714)
|++|+.+||.|++.|+|+|| ..||+|.+..++--+
T Consensus 58 R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~~y~f~~~~~~~~~ 100 (385)
T 3ml6_A 58 RREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRP 100 (385)
T ss_dssp HHHHHHHHHHHHHHSSEEESSSCSSCCSSSEEEECCCCC----
T ss_pred HHHHHHHHHHHHhCCcEEEcCCcceecCcceEEeeccccccCc
Confidence 78999999999999999999 678999776655433
No 110
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=85.56 E-value=0.38 Score=52.45 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhhccccccc-----------ceeeEeec
Q psy11552 97 QITTGMWQALLEEGVIYHG-----------KISCFFFS 123 (714)
Q Consensus 97 ~~a~~~~~~l~~~g~~~hv-----------~~~y~f~~ 123 (714)
+||+.+|+.|++.|+|+|| ..||||..
T Consensus 70 ~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~ 107 (424)
T 2pbi_A 70 LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQT 107 (424)
T ss_dssp HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECC
T ss_pred HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCC
Confidence 3899999999999999999 67888853
No 111
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=73.68 E-value=4.9 Score=34.84 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=38.1
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-..-.++..+++|++|++.+...+. ...+++||.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i 84 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA--QRRLHQGDLL 84 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE--EEEECTTEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE--EEEECCCCEE
Confidence 4455788999887777778899999999999987665 6788998865
No 112
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=72.95 E-value=7 Score=34.36 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=35.3
Q ss_pred eEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 328 FEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 328 ~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
....+.+|..+-..- ..+.+++|++|++.+...+ ....+++||++-
T Consensus 43 ~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~~g--~~~~l~~GD~v~ 88 (119)
T 3lwc_A 43 GYGRYAPGQSLTETM-AVDDVMIVLEGRLSVSTDG--ETVTAGPGEIVY 88 (119)
T ss_dssp EEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEETT--EEEEECTTCEEE
T ss_pred EEEEECCCCCcCccC-CCCEEEEEEeCEEEEEECC--EEEEECCCCEEE
Confidence 344678887765443 7899999999999998844 467899999763
No 113
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=70.79 E-value=5.7 Score=34.04 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=33.2
Q ss_pred eecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 331 HPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 331 ~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
.+++|..+-....++..+++|++|++.+...+. ...+++||.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~--~~~l~~Gd~i 86 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDDQ--KIDLVPEDVL 86 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE--EEEECTTCEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECCE--EEEecCCCEE
Confidence 456776655555678899999999999987664 6789999865
No 114
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=70.02 E-value=13 Score=31.69 Aligned_cols=58 Identities=14% Similarity=0.028 Sum_probs=38.0
Q ss_pred CHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 315 SNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 315 s~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
....+...-....-...+.+|..-.. .+...+++|++|++.+...++ ....+++||.+
T Consensus 21 ~~~~l~~~g~~~~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g-~~~~l~~GD~i 78 (101)
T 1o5u_A 21 TPEKLKELSVEKWPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDG-KKYVIEKGDLV 78 (101)
T ss_dssp CHHHHHHHTGGGSCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTC-CEEEEETTCEE
T ss_pred CccEEeeCCceEEEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCC-CEEEECCCCEE
Confidence 34444444332222335677765544 457899999999999988622 36789999876
No 115
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=67.55 E-value=8.5 Score=37.80 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=36.5
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED 374 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~ 374 (714)
+....+.+|+.+-..-.+++.+++|++|++++...+. ...+++||+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~--~~~l~~Gd~ 84 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENN--KKTISNGDF 84 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSC--EEEEETTEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCE--EEEECCCCE
Confidence 3455789999998888899999999999999988765 345666554
No 116
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=67.48 E-value=9.2 Score=32.57 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=36.0
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
.....+++|..+-..-.....+++|++|.+.+...+. ...+++||.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~ 88 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE--TYRVAEGQTI 88 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE--EEEEETTCEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE--EEEECCCCEE
Confidence 3444678888776555567899999999999987654 5689999876
No 117
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=65.30 E-value=9.3 Score=33.18 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=37.3
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-..-.++..+++|++|++.+...+. ...+++||.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE--TRVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE--EEEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE--EEEeCCCCEE
Confidence 4555788998886666667899999999999987654 5788998865
No 118
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=64.75 E-value=9.5 Score=32.52 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=35.6
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
.....+++|..+-..-.+...+++|++|.+.+...+. ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~ 82 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV--IKVLTAGDSF 82 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE--EEEECTTCEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE--EEEeCCCCEE
Confidence 4455678888765444557889999999999987554 6789999874
No 119
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=64.10 E-value=10 Score=31.91 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=35.9
Q ss_pred ceEEeecCCCEEEcc--CCc-CCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQ--GDE-GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~q--Gd~-g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-.. -.. ...+++|++|++.+...+. ...+++||.+
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH--TQALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE--EEEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEE
Confidence 445578899877654 445 6899999999999987654 6788998865
No 120
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=63.94 E-value=11 Score=31.01 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=34.8
Q ss_pred ceEEeecCCCEEEccCCcC-CeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEG-KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g-~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-..-..+ ..+++|++|++.+...+. ...+++||.+
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~--~~~l~~Gd~~ 77 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE--EALLAPGMAA 77 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE--EEEECTTCEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEE
Confidence 3445678888775544454 569999999999987654 6789999875
No 121
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=62.13 E-value=6.2 Score=32.88 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=35.3
Q ss_pred ceEEeecCCCEEEccCCcCC-eEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 327 MFEAHPRKGEILFHQGDEGK-SWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~-~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
+....+++|...-..-.++. .+++|++|.+.+...+......+.+||.+=
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEE
Confidence 34556788876544444555 499999999999876521467899999874
No 122
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=59.84 E-value=10 Score=32.86 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=34.8
Q ss_pred ceEEeecCCCEEEccCCcC-CeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEG-KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g-~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-..-.++ ..+++|++|++.+...++ ....+++||.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNG-IVTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTT-CEEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCC-eEEEeCCCCEE
Confidence 4455788898876655665 788889999999976232 36788999864
No 123
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=57.05 E-value=11 Score=33.87 Aligned_cols=45 Identities=13% Similarity=-0.016 Sum_probs=32.4
Q ss_pred eEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 328 FEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 328 ~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
....+.+|. +..-..++.+++|++|++.+...+. ...+++||.|-
T Consensus 60 ~~~~~~pG~--~~~h~~~~E~~~VLeG~~~l~~~g~--~~~l~~GD~i~ 104 (133)
T 2pyt_A 60 GFMQWDNAF--FPWTLNYDEIDMVLEGELHVRHEGE--TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEE--EEEECSSEEEEEEEEEEEEEEETTE--EEEEETTCEEE
T ss_pred EEEEECCCC--ccccCCCCEEEEEEECEEEEEECCE--EEEECCCcEEE
Confidence 344577783 2222347899999999999988744 56899999874
No 124
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=53.25 E-value=19 Score=35.26 Aligned_cols=47 Identities=23% Similarity=0.206 Sum_probs=38.2
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-..-.+++.+++|++|++.+...+. ...+.+||.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~--~~~l~~Gd~i 201 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK--PFIVKKGESA 201 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE--EEEEETTEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE--EEEECCCCEE
Confidence 4455789999987666778899999999999987664 6788999875
No 125
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=52.82 E-value=17 Score=33.82 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.7
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+.+|..+-..-.....+++|++|++.+...+. ...+++||++
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~--~~~l~~Gd~i 104 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR--VEPLTPLDCV 104 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE--EEEECTTCEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE--EEEECCCCEE
Confidence 4444677887665444568899999999999987665 7788999865
No 126
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=52.81 E-value=18 Score=34.01 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=33.1
Q ss_pred eEEeecCCCEEE--ccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 328 FEAHPRKGEILF--HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 328 ~~~~~~~G~iI~--~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
....+++|.... .....+..+++|++|++.+...+. ...|++||++
T Consensus 107 ~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~--~~~l~~GD~i 154 (192)
T 1y9q_A 107 FEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ--WHELQQGEHI 154 (192)
T ss_dssp EEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE--EEEECTTCEE
T ss_pred EEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE--EEEeCCCCEE
Confidence 344567777654 222345799999999999987654 6789999976
No 127
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=52.43 E-value=18 Score=31.95 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=34.3
Q ss_pred eEEeecCCCEEEccCCcC-CeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 328 FEAHPRKGEILFHQGDEG-KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 328 ~~~~~~~G~iI~~qGd~g-~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
....+++|..+-..-..+ ..+++|++|++.+...+. ...+++||++
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~--~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK--DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE--EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE--EEEeCCCcEE
Confidence 445688888764433444 789999999999987654 6789999875
No 128
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=50.82 E-value=12 Score=35.50 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=34.7
Q ss_pred ceEEeecCCCEEE---ccCCcCCeEEEEEEeEEEEEEeCce--EEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILF---HQGDEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~---~qGd~g~~~YiI~~G~V~V~~~~~~--~v~~l~~Gd~F 375 (714)
++...+++|...- ..-.++..+++|++|++.+...+.+ ....|++||++
T Consensus 119 ~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~ 172 (198)
T 2bnm_A 119 PLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASM 172 (198)
T ss_dssp EEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEE
T ss_pred EEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEE
Confidence 3444667776543 2334568899999999999886611 46789999976
No 129
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=50.29 E-value=19 Score=35.29 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=33.8
Q ss_pred eecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 331 HPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 331 ~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
.+.+|..+=.--.+++.+|+|++|.+++...++ ....+++||.+
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~~~~l~pGd~v 181 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-PDLMLEPGQTR 181 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETTS-CCEEECTTCEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-CEEecCCCCEE
Confidence 456666665555679999999999999987744 47788998765
No 130
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=50.12 E-value=24 Score=31.86 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=35.9
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-..-.....+++|++|++.+...+. ....+++||.+
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~-~~~~l~~Gd~i 97 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGK-PARILKKGDVV 97 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTS-CCEEEETTCEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEECCE-EEEEECCCCEE
Confidence 4455678888775545566889999999999987765 22678898876
No 131
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=49.33 E-value=11 Score=35.52 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.8
Q ss_pred EEeecC-CCE-EEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 329 EAHPRK-GEI-LFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 329 ~~~~~~-G~i-I~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
...+++ |.. =-..-..+..+++|++|.+.|...+. ...|++||+|=
T Consensus 92 ~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~--~~~L~~Gds~~ 139 (166)
T 2vpv_A 92 ILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKN--KFLSVKGSTFQ 139 (166)
T ss_dssp EEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTE--EEEEETTCEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCE--EEEEcCCCEEE
Confidence 345677 531 12233467889999999999988765 67899999864
No 132
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=49.28 E-value=15 Score=33.97 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=34.0
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+.+|..+-..-.....+++|++|++.+...++ ...+++||.+
T Consensus 46 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~--~~~l~~Gd~i 92 (156)
T 3kgz_A 46 WRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET--ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE--EEEEETTCEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEE
Confidence 3444566776654444557789999999999987654 7788998865
No 133
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=48.71 E-value=12 Score=35.27 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=35.2
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|...-..-..+..+++|++|++++...+. ....|++||++
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~g-e~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDG-AKRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGG-CEEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCC-eEEEECCCCEE
Confidence 4555788887554333455678899999999977622 36789999997
No 134
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=48.28 E-value=24 Score=34.99 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=34.1
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
++...+++|...-..- ++.+++|++|++.+...++ ...|++||++
T Consensus 52 ~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~--~~~l~~Gd~~ 96 (246)
T 1sfn_A 52 QFTAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGE--TRTLREYDYV 96 (246)
T ss_dssp EEEEEECTTCEEECCS--SEEEEEEEEEEEEEECSSC--EEEECTTEEE
T ss_pred EEEEEECCCCcCCCCc--eeEEEEEEECEEEEEECCE--EEEECCCCEE
Confidence 4566788888765443 8889999999999987665 5677777765
No 135
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=47.69 E-value=19 Score=35.70 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=38.6
Q ss_pred cceEEeecCCCEEEc-cCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 326 VMFEAHPRKGEILFH-QGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 326 ~~~~~~~~~G~iI~~-qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
.+....+++|..+-. .-..+...++|++|+..+...++ ...+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~--~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN--YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE--EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCE--EEEcCCCCEEE
Confidence 356668999987753 45567899999999999987765 67899999753
No 136
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=46.86 E-value=16 Score=33.66 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.8
Q ss_pred cCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 344 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 344 ~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
..+.+++|++|++.+...+ ....+++||.|
T Consensus 83 ~~eE~~yVLeG~~~l~i~g--~~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIIDG--RKVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEETT--EEEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEECC--EEEEEcCCCEE
Confidence 5778999999999998744 47789999876
No 137
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=46.81 E-value=17 Score=31.74 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=32.9
Q ss_pred eEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 328 FEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 328 ~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
....+++|..+-..-.....+++|++|++.+...+. ...+.+||.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i 96 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG--EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSC--EEEEETTEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCE--EEEECCCCEE
Confidence 444566776654444457889999999999877654 5678888765
No 138
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=46.51 E-value=15 Score=34.28 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=34.2
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+.+|..+-..-.....+++|++|++.+...++ ...+++||.+
T Consensus 55 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~--~~~l~~GD~i 101 (166)
T 3jzv_A 55 LRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA--VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE--EEEECTTCEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEE
Confidence 3444567776654444557789999999999977654 7789998865
No 139
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=46.07 E-value=16 Score=31.18 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=31.7
Q ss_pred EEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 329 EAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 329 ~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
...+++|..+-..-.....+++|++|++.+...+. ....+++||.+
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~~l~~Gd~i 76 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQ-EPHNYKEGNIV 76 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEETTS-CCEEEETTCEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCE-EEEEeCCCCEE
Confidence 33566776653333457789999999999987665 23378888865
No 140
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=44.80 E-value=16 Score=31.49 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=30.8
Q ss_pred ecCCCEEEc---cCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 332 PRKGEILFH---QGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 332 ~~~G~iI~~---qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
..+|+.... ....++.+++|++|++.+...+......|++||++=
T Consensus 37 ~~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ 84 (112)
T 2opk_A 37 ISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLH 84 (112)
T ss_dssp EESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTCSSCEEECTTEEEE
T ss_pred EeCCccCCCCccccCCccEEEEEEeCeEEEEECCEEEEEEECCCCEEE
Confidence 345554433 234678999999999999887652116899998764
No 141
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=44.64 E-value=23 Score=30.65 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=34.3
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|...-..-.....+++|++|++.+...+. ...+++||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~--~~~l~~Gd~~ 82 (128)
T 4i4a_A 36 GAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE--DFPVTKGDLI 82 (128)
T ss_dssp EEEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTE--EEEEETTCEE
T ss_pred EEEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCE--EEEECCCcEE
Confidence 4455677777554444467889999999999987664 6678888765
No 142
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=43.95 E-value=17 Score=33.18 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=34.3
Q ss_pred ceEEeecCCCE-E-EccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEI-L-FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~i-I-~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|.. . .+.-..+..+++|++|++.+...+. ...+++||++
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~--~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND--QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE--EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE--EEEeCCCCEE
Confidence 44556788873 2 2222357899999999999987664 6789999976
No 143
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=43.69 E-value=13 Score=32.81 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.3
Q ss_pred ecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 332 PRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 332 ~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
..+|..-.+.. .++.+++|++|++.+...+. ....|++||.+-
T Consensus 56 ~~pG~~~~~~~-~~~E~~~Vl~G~~~l~~~~g-~~~~l~~GD~~~ 98 (123)
T 3bcw_A 56 STSGSFQSNTT-GYIEYCHIIEGEARLVDPDG-TVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEECCCT-TEEEEEEEEEEEEEEECTTC-CEEEEETTCEEE
T ss_pred ECCCceeeEcC-CCcEEEEEEEEEEEEEECCC-eEEEECCCCEEE
Confidence 44565544332 24899999999999987433 467899999874
No 144
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=43.31 E-value=23 Score=33.29 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=36.4
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEe--CceEEEEecCCCccc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY--GKGCVTSLYAGEDFG 376 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~--~~~~v~~l~~Gd~FG 376 (714)
+....+++|...-..-..++.+++|++|++.+... +.+....+++||++=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 55667889987765533468999999999998764 223577889988753
No 145
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=41.33 E-value=32 Score=33.89 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=34.8
Q ss_pred EEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCc
Q psy11552 329 EAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED 374 (714)
Q Consensus 329 ~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~ 374 (714)
...+++|..+-..-.++..+++|++|.+.+...+. ...+.+||.
T Consensus 38 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~--~~~l~~Gd~ 81 (243)
T 3h7j_A 38 MSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV--TRKMTALES 81 (243)
T ss_dssp EEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE--EEEEETTTC
T ss_pred EEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE--EEEECCCCE
Confidence 33588998887666678899999999999987554 667888883
No 146
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=40.37 E-value=22 Score=32.77 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=34.1
Q ss_pred ceEEeecCCCEEE--ccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 327 MFEAHPRKGEILF--HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 327 ~~~~~~~~G~iI~--~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
+....+++|.... +.-...+.+++|++|++.+...+. ...|++||.+=
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~--~~~l~~GD~i~ 94 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG--EHPMVPGDCAA 94 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE--EEEECTTCEEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE--EEEeCCCCEEE
Confidence 4455678887542 222223799999999999987765 67899998753
No 147
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=39.40 E-value=15 Score=32.37 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=30.6
Q ss_pred ecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 332 PRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 332 ~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
..+|..-... +..+.++.|++|++.+...+ |....+++||.|-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQAD-ADPVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEETT-CCCEEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEeCC-CeEEEECCCCEEE
Confidence 4455444443 33458999999999998765 4577899999875
No 148
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=38.39 E-value=18 Score=36.61 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=34.5
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEe-CceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY-GKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~-~~~~v~~l~~Gd~F 375 (714)
+....+++|..--.....+..+.+|++|++.+... ++ ..+|++||+|
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~--~~~L~~Gds~ 119 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSS--SKKLTVDSYA 119 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CC--CEEECTTEEE
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCc--EEEEcCCCEE
Confidence 66667888876422334578999999999999876 54 5678888876
No 149
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=38.00 E-value=43 Score=27.72 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=32.1
Q ss_pred ceEEeecCCCEEEccCCcC-CeE-EEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEG-KSW-YIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g-~~~-YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
.....+.+|..+-..-... ..+ ++|++|++.+...++ ....+.+||.+
T Consensus 35 ~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~-~~~~l~~Gd~~ 84 (110)
T 2q30_A 35 IVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGD-AVIPAPRGAVL 84 (110)
T ss_dssp EEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGG-CEEEECTTEEE
T ss_pred EEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCC-EEEEECCCCEE
Confidence 3444678888765444333 455 799999999877522 36678998865
No 150
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=37.98 E-value=32 Score=34.55 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=36.8
Q ss_pred ceEEeecCCCEEEc-cCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFH-QGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~-qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-. .-.....+++|++|++.+...++ ...+++||++
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~--~~~l~~GD~i 231 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE--WYPVEKGDYI 231 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE--EEEEETTCEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE--EEEECCCCEE
Confidence 45557889987644 44567899999999999987664 6789999976
No 151
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=37.77 E-value=25 Score=32.10 Aligned_cols=49 Identities=6% Similarity=0.156 Sum_probs=34.2
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce-------EEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG-------CVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~-------~v~~l~~Gd~F 375 (714)
+....+++|..+-..-.....+++|++|++.+...+.+ ....+++||.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 44556788876533333567799999999999887621 46678888764
No 152
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=37.77 E-value=37 Score=30.48 Aligned_cols=48 Identities=8% Similarity=-0.050 Sum_probs=32.3
Q ss_pred eEEeecCCCEEEccCCc-CCeEEEEEEeEEEEEEeCce----EEEEecCCCcc
Q psy11552 328 FEAHPRKGEILFHQGDE-GKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 375 (714)
Q Consensus 328 ~~~~~~~G~iI~~qGd~-g~~~YiI~~G~V~V~~~~~~----~v~~l~~Gd~F 375 (714)
....+++|..+-..-.. .+.+++|++|.+.+...+.. ....+.+||++
T Consensus 46 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 46 TLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 44467777765333333 45899999999999887652 01678888753
No 153
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=35.65 E-value=36 Score=29.29 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=30.6
Q ss_pred ceEEeecCCCEEE--ccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILF--HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~--~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+- ..-+...-+|+|++|++.+...+. ...+++||.+
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~--~~~l~~Gd~i 76 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE--KIELQAGDWL 76 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE--EEEEETTEEE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE--EEEeCCCCEE
Confidence 3444677777552 222223457779999999987654 6678888765
No 154
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=34.89 E-value=32 Score=32.41 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=27.5
Q ss_pred CcCCeEEEEEEeEEEEEEeCce--EEEEecCCCccch
Q psy11552 343 DEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGK 377 (714)
Q Consensus 343 d~g~~~YiI~~G~V~V~~~~~~--~v~~l~~Gd~FGE 377 (714)
++.+.+|++++|++.+...++| .-..+++||+|=-
T Consensus 53 h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~l 89 (174)
T 1yfu_A 53 DPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLL 89 (174)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEE
T ss_pred CCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEe
Confidence 3688999999999999776533 4568999998853
No 155
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=34.09 E-value=29 Score=37.14 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=37.6
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
+....+++|...-..-.....+|+|++|+..+...+ ....+++||+|=
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~g--e~~~~~~GD~~~ 343 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGG--KRFDWSEHDIFC 343 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETT--EEEEECTTCEEE
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECC--EEEEEeCCCEEE
Confidence 355578899988766667888999999999776654 477899999874
No 156
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=33.80 E-value=28 Score=34.34 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=36.4
Q ss_pred eEEeecC-CCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 328 FEAHPRK-GEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 328 ~~~~~~~-G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
....+++ |..+-..-.++..+++|++|++.+...++ ...+++||.+-
T Consensus 148 ~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i~ 195 (243)
T 3h7j_A 148 MLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGC--TVEMKFGTAYF 195 (243)
T ss_dssp EEEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTE--EEEECTTCEEE
T ss_pred EEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCE--EEEECCCCEEE
Confidence 3446888 87776555667899999999999987765 56799998754
No 157
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=33.52 E-value=48 Score=33.97 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=35.5
Q ss_pred ceEEeecCCCEEEccCCc-CCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDE-GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~-g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+.+|...-..-.. ...+++|++|++.+...+. ...+++||++
T Consensus 48 ~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~--~~~l~~Gd~~ 95 (337)
T 1y3t_A 48 IVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE--RYLLISGDYA 95 (337)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE--EEEECTTCEE
T ss_pred EEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCE--EEEECCCCEE
Confidence 455578898876444444 8899999999999987543 6789998865
No 158
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=33.03 E-value=52 Score=34.66 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=36.3
Q ss_pred ceEEeecCCCEEEccCCcC-CeEEEEEEeEEEEEEe--Cc-eEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEG-KSWYIIIQGSVDVVIY--GK-GCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g-~~~YiI~~G~V~V~~~--~~-~~v~~l~~Gd~F 375 (714)
+....+++|...-..-.++ ..+++|++|++.+... +. +....+++||+|
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~ 311 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVG 311 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEE
Confidence 4555788998876555566 8999999999998765 11 246778888875
No 159
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=32.93 E-value=25 Score=35.67 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=31.8
Q ss_pred ceEEeecCCCEEE--ccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILF--HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~--~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|...- .....+..+++|++|++.+...++ ...|++||++
T Consensus 70 ~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~--~~~L~~GD~i 118 (278)
T 1sq4_A 70 QYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ--VHAMQPGGYA 118 (278)
T ss_dssp EEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC--EEEECTTEEE
T ss_pred EEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCE--EEEECCCCEE
Confidence 4555677887661 122457889999999999988754 4456666654
No 160
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=32.36 E-value=61 Score=33.68 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=35.8
Q ss_pred ceEEeecCCCEEEccCCcC-CeEEEEEEeEEEEEEe---CceEEEEecCCCccc
Q psy11552 327 MFEAHPRKGEILFHQGDEG-KSWYIIIQGSVDVVIY---GKGCVTSLYAGEDFG 376 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g-~~~YiI~~G~V~V~~~---~~~~v~~l~~Gd~FG 376 (714)
+....+++|..+-..-.++ ..+++|++|++.+... +......+++||+|=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 4555788898775555555 8999999999999762 221366788888763
No 161
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=32.05 E-value=25 Score=35.05 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=33.1
Q ss_pred ceEEeecCCCEEEcc-C-CcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 327 MFEAHPRKGEILFHQ-G-DEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 327 ~~~~~~~~G~iI~~q-G-d~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
++...+++|...-.. . ..++.+++|++|++.+...++ ...|++||++=
T Consensus 61 ~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~--~~~L~~Gd~~~ 110 (261)
T 1rc6_A 61 DYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK--TFALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE--EEEEETTEEEE
T ss_pred EEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCE--EEEECCCCEEE
Confidence 455567777655322 1 224679999999999987654 67888888764
No 162
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=31.99 E-value=91 Score=29.57 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=34.2
Q ss_pred ceEEeecCCCEEEccCCc-CCeEEEEEEeEEEEEEeCc----eE--EEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDE-GKSWYIIIQGSVDVVIYGK----GC--VTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~-g~~~YiI~~G~V~V~~~~~----~~--v~~l~~Gd~F 375 (714)
+....+.+|...-..-.+ +..+++|++|++.+...+. +. ...+++||.|
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~ 129 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETF 129 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEE
Confidence 455578888876554445 5799999999999976422 22 5667777765
No 163
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=31.91 E-value=35 Score=32.12 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=26.7
Q ss_pred CCcCCeEEEEEEeEEEEEEeCce------EEEEecCCCccc
Q psy11552 342 GDEGKSWYIIIQGSVDVVIYGKG------CVTSLYAGEDFG 376 (714)
Q Consensus 342 Gd~g~~~YiI~~G~V~V~~~~~~------~v~~l~~Gd~FG 376 (714)
-++.+.+|++++|+..+...++| .-..+++||+|=
T Consensus 51 ~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl 91 (176)
T 1zvf_A 51 INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL 91 (176)
T ss_dssp ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE
T ss_pred CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE
Confidence 34567999999999999776633 356789998874
No 164
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=31.76 E-value=24 Score=31.11 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=29.4
Q ss_pred EeecCCCEEEccCCcCCeEEEEEEeEEEEE--EeCceEEEEecCCCcc
Q psy11552 330 AHPRKGEILFHQGDEGKSWYIIIQGSVDVV--IYGKGCVTSLYAGEDF 375 (714)
Q Consensus 330 ~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~--~~~~~~v~~l~~Gd~F 375 (714)
..+++|..+-..-.....+++|++|++.+. ..+ ....+++||.+
T Consensus 44 ~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~--~~~~l~~Gd~~ 89 (145)
T 3ht1_A 44 FEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQG--RTEEVGPGEAI 89 (145)
T ss_dssp EEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGT--EEEEECTTCEE
T ss_pred EEECCCCcCCCccCCCceEEEEEEeEEEEEEeECC--EEEEECCCCEE
Confidence 345565544333334566677999999997 544 47789999865
No 165
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=31.34 E-value=64 Score=33.51 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=34.9
Q ss_pred ceEEeecCCCEEEccCCc-CCeEEEEEEeEEEEEEeC---ceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDE-GKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~-g~~~YiI~~G~V~V~~~~---~~~v~~l~~Gd~F 375 (714)
+....+.+|...-..-.. +..+++|++|++.+...+ ......+++||++
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~ 106 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLW 106 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEE
Confidence 345567888876444445 889999999999998732 2246788888754
No 166
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=30.80 E-value=50 Score=33.33 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=38.1
Q ss_pred cceEEeecCCCEEEc-cCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 326 VMFEAHPRKGEILFH-QGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 326 ~~~~~~~~~G~iI~~-qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
.+....+++|..+-. +-..-...|+|++|+..+...++ ...+++||++
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~--~~~v~~GD~~ 240 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQD--WVEVEAGDFM 240 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTE--EEEEETTCEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCE--EEEeCCCCEE
Confidence 466778999999863 44445688999999999987764 7889999975
No 167
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=30.69 E-value=37 Score=33.76 Aligned_cols=47 Identities=11% Similarity=-0.078 Sum_probs=35.3
Q ss_pred ceEEeecCCCEEEccCC-cCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGD-EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd-~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|..+-..-. ....+++|++|++.+...++ ...+++||++
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~--~~~l~~GD~i 228 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN--WIPVKKGDYI 228 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC--EEEEETTCEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE--EEEeCCCCEE
Confidence 45667889886643333 46789999999999987665 6789999875
No 168
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=28.93 E-value=76 Score=33.37 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=35.8
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-eE--EEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-GC--VTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~~--v~~l~~Gd~F 375 (714)
+....+.+|..+-..-.+...+++|++|++.+...+. +. ...+++||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence 4555788998765444458899999999999988432 32 4588888764
No 169
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=28.43 E-value=40 Score=29.42 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCCEEEccCCcC-CeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 334 KGEILFHQGDEG-KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 334 ~G~iI~~qGd~g-~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+|...-..-..+ ..+++|++|.+.+...+. ....+++||.+
T Consensus 52 ~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~~-~~~~l~~Gd~~ 93 (134)
T 2o8q_A 52 KEAKPTWHTHTVGFQLFYVLRGWVEFEYEDI-GAVMLEAGGSA 93 (134)
T ss_dssp ----CCCEEECCSCEEEEEEESEEEEEETTT-EEEEEETTCEE
T ss_pred CCCCCCCEECCCCcEEEEEEeCEEEEEECCc-EEEEecCCCEE
Confidence 454432222344 889999999999988762 36789999865
No 170
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=28.10 E-value=32 Score=34.64 Aligned_cols=48 Identities=17% Similarity=-0.031 Sum_probs=32.8
Q ss_pred ceEEeecCCCEEEccC-C-cCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 327 MFEAHPRKGEILFHQG-D-EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qG-d-~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
++...+++|...-..- . .++.+++|++|++.+...++ ...|++||++=
T Consensus 64 ~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~--~~~L~~GD~~~ 113 (274)
T 1sef_A 64 DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE--THELEAGGYAY 113 (274)
T ss_dssp EEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC--EEEEETTEEEE
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE--EEEECCCCEEE
Confidence 4555677776553321 2 24679999999999987655 56788888653
No 171
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=27.56 E-value=44 Score=27.22 Aligned_cols=28 Identities=21% Similarity=0.536 Sum_probs=23.1
Q ss_pred CeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 346 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 346 ~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
..+++|++|++.+...+. ...+++||.+
T Consensus 51 ~e~~~v~~G~~~~~~~~~--~~~l~~Gd~~ 78 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQ--NITLQAGEMY 78 (102)
T ss_dssp CEEEEEEESEEEEECSSC--EEEEETTEEE
T ss_pred cEEEEEEeCEEEEEECCE--EEEEcCCCEE
Confidence 889999999999977665 5678898864
No 172
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=25.09 E-value=52 Score=35.22 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=34.8
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+.+|+.+-..-.....+|+|++|+-.....+. ....+++||+|
T Consensus 125 a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G-~~~~~~~GD~i 172 (394)
T 3bu7_A 125 SGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDG-HKVELGANDFV 172 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETT-EEEEECTTCEE
T ss_pred EEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECC-EEEEEcCCCEE
Confidence 3555789999887666667789999999976533333 46677888765
No 173
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=25.09 E-value=45 Score=35.01 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=35.4
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCcc
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 375 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~F 375 (714)
+....+++|...-..-.....+++|++|+..+...++ ....+++||.|
T Consensus 102 ~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g-~~~~l~~GD~~ 149 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDG-ERTPMNEGDFI 149 (354)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETT-EEEECCTTCEE
T ss_pred EEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECC-EEEEEcCCCEE
Confidence 3455788998875555567899999999987733333 46789999876
No 174
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=24.04 E-value=71 Score=28.91 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred EccCCcCCeEEEEEEeEEEEEEeCc------eEEEEecCCCcc
Q psy11552 339 FHQGDEGKSWYIIIQGSVDVVIYGK------GCVTSLYAGEDF 375 (714)
Q Consensus 339 ~~qGd~g~~~YiI~~G~V~V~~~~~------~~v~~l~~Gd~F 375 (714)
++.-+..|.+|+|++|++.+...+. .....+++|++|
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~y 86 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVY 86 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEE
Confidence 4445668999999999999876532 124567777654
No 175
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=23.96 E-value=30 Score=28.96 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=28.3
Q ss_pred ecCCCEEEccCCcC-CeEEEEEEeEEEEEEeC-ceEEEEecCCCcc
Q psy11552 332 PRKGEILFHQGDEG-KSWYIIIQGSVDVVIYG-KGCVTSLYAGEDF 375 (714)
Q Consensus 332 ~~~G~iI~~qGd~g-~~~YiI~~G~V~V~~~~-~~~v~~l~~Gd~F 375 (714)
..+|... ..-.++ ..+++|++|++.+...+ . ...+++||.+
T Consensus 35 ~~~g~~~-~H~H~~~~E~~~Vl~G~~~~~~~~~~--~~~l~~Gd~~ 77 (107)
T 2i45_A 35 KLLGDYG-WHTHGYSDKVLFAVEGDMAVDFADGG--SMTIREGEMA 77 (107)
T ss_dssp EEEEECC-CBCC--CCEEEEESSSCEEEEETTSC--EEEECTTEEE
T ss_pred ECCCCCc-ceeCCCCCEEEEEEeCEEEEEECCCc--EEEECCCCEE
Confidence 3455432 223345 89999999999998877 4 6789999876
No 176
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=22.81 E-value=72 Score=34.56 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=38.4
Q ss_pred cceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEe--CceEEEEecCCCcc
Q psy11552 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY--GKGCVTSLYAGEDF 375 (714)
Q Consensus 326 ~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~--~~~~v~~l~~Gd~F 375 (714)
.+....+++|..+-..-...+.+++|++|++.+... +......+++||++
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEE
Confidence 456668899998876644578999999999988664 22367788998876
No 177
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=22.37 E-value=56 Score=29.44 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=35.5
Q ss_pred ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEE--EEecCCCccch
Q psy11552 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCV--TSLYAGEDFGK 377 (714)
Q Consensus 327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v--~~l~~Gd~FGE 377 (714)
+...++++|..+-....++...++|++|+.... .+. .. ..+++||++=.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~-~g~-~~~~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR-GGK-AAGGDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET-TCG-GGTSEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc-CCC-EecceEeCCCEEEEE
Confidence 345578999999888888999999999999852 221 22 46677776544
No 178
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=22.17 E-value=81 Score=33.05 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=35.1
Q ss_pred EEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 329 EAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 329 ~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
...+++|...-..-.....+|+|++|+..+...+ ....+++||.|=
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v~~--~~~~~~~GD~~~ 317 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGN--ETFSFSAKDIFV 317 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEETT--EEEEEETTCEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEECC--EEEEEcCCCEEE
Confidence 4467788766555556678999999999998854 477899999864
No 179
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=20.88 E-value=83 Score=34.17 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=38.2
Q ss_pred cceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEe--CceEEEEecCCCccc
Q psy11552 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY--GKGCVTSLYAGEDFG 376 (714)
Q Consensus 326 ~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~--~~~~v~~l~~Gd~FG 376 (714)
.+....++||..+-..-..++.+++|++|++.+... +.+....+++||+|-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEE
Confidence 355567899988766655689999999999888653 323677899998763
No 180
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=20.74 E-value=65 Score=31.92 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=25.1
Q ss_pred CCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552 345 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 376 (714)
Q Consensus 345 g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG 376 (714)
.+.+..|++|++.+...+. ....+++||.|-
T Consensus 186 ~~E~~~ILeG~v~lt~~~G-~~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENG-SSLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEETTS-CEEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeCCC-CEEEECCCCEEE
Confidence 4678889999999987653 567899999874
Done!