RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11552
(714 letters)
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 152 bits (385), Expect = 2e-40
Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 43/241 (17%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
+++ V RL T++++PS+ KK E L +++ Y + + P +PF + L
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLT 370
Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
++ T +GN V+ L+NF K A
Sbjct: 371 NILKTEEGNPEVLKRHGK------------------------------ELINFSKRRKVA 400
Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRI------LTSMSQKLEPRR 713
+ ++ + + L ES++K + L M N L + S ++EPR
Sbjct: 401 EITGEIQQYQNQPYCLRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRN 455
Query: 714 S 714
Sbjct: 456 P 456
>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 101 bits (253), Expect = 7e-26
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205
R+C G+ELVDW++ S SR GMWQ LLE+GV+ HV+ E+ F+DK + Y F
Sbjct: 36 RQCCVGTELVDWMIQQT-SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLD 94
Query: 206 DKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQ 249
D+ + T ++ E +E L++ +L L++ PDA +R ILRK
Sbjct: 95 DEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKP 138
Score = 68.0 bits (166), Expect = 4e-14
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 37 PSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSR 96
PS + RAG +LR +L+ +RDRK +T R+C G+ELVDW++ S SR
Sbjct: 2 PSEKILRAGKILRIAILSRAPHMIRDRK-YHLKTY-RQCCVGTELVDWMIQQT-SCVHSR 58
Query: 97 QITTGMWQALLEEGVIYHG 115
GMWQ LLE+GV+ H
Sbjct: 59 TQAVGMWQVLLEDGVLNHV 77
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 80.6 bits (198), Expect = 1e-18
Identities = 62/93 (66%), Positives = 81/93 (87%)
Query: 294 TSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQ 353
T +DLE IY+ELLH+K L HLS +V+RELAGV++FE+H + G +LF+QG+EG SWYII++
Sbjct: 1 TVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILK 60
Query: 354 GSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
GSV+VVIYGKG V +L+ G+DFGKLALVN+APR
Sbjct: 61 GSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPR 93
>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 94
Score = 58.4 bits (141), Expect = 3e-11
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 125 TETIPMERIYYSLYSGG-----------RTIARRCASGSELVDWLMSLAPSLAVSRQITT 173
T M I + + G+++VDWL + R+
Sbjct: 5 TVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYT-HVEGFKERREAR 63
Query: 174 GMWQALLEEGVIYHVNGEQAFRDKCILYNF 203
++L+ G + H + F ++C Y F
Sbjct: 64 KYASSMLKHGFLRHTVNKITFSEQC-YYVF 92
Score = 50.3 bits (120), Expect = 2e-08
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 36 SPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVS 95
+P + ++R + L D +RDR + G+++VDWL +
Sbjct: 2 APLTVKSDMSAIVRVMQLPDSGLEIRDRMW--LKITIANAVIGADVVDWLYT-HVEGFKE 58
Query: 96 RQITTGMWQALLEEGVIYH 114
R+ ++L+ G + H
Sbjct: 59 RREARKYASSMLKHGFLRH 77
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 59.1 bits (142), Expect = 6e-11
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 289 KPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
+PL+R+SED++ I+ L +K ++ R++ +E KG LF QGD G +W
Sbjct: 10 RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLE-KGITLFRQGDIGTNW 68
Query: 349 YIIIQGSVDVVIYGKGC 365
Y ++ GS+DV +
Sbjct: 69 YAVLAGSLDVKVSETSS 85
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 115
Score = 53.4 bits (128), Expect = 2e-09
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 24/104 (23%)
Query: 122 FSETETIPMERIYYSLYSG-----------GRTIARRCASGSELVDWLMSLAPSLAVSRQ 170
ETI + +Y S+ + I C +G+ ++DWL+S +RQ
Sbjct: 3 IRLPETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSN--QSVRNRQ 60
Query: 171 ITTGMWQALLEEGVIYHVN-----------GEQAFRDKCILYNF 203
+ +LL EG + + Y F
Sbjct: 61 EGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYF 104
Score = 48.8 bits (116), Expect = 1e-07
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 52 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGV 111
+ D +++ + I C +G+ ++DWL+S +RQ + +LL EG
Sbjct: 17 SMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSN--QSVRNRQEGLMIASSLLNEGY 74
Query: 112 IYH 114
+
Sbjct: 75 LQP 77
>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 120
Score = 52.3 bits (125), Expect = 7e-09
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 127 TIPMERIYYSLYSG------------GRTIARRCASGSELVDWLMSLAPSLAVSRQITTG 174
+ + RI ++ G T ++ GS LVDWL+S + A SR
Sbjct: 5 SSGLHRIVDKMHDTSTGIRPSPNMEQGSTY-KKTFLGSSLVDWLISS--NFAASRLEAVT 61
Query: 175 MWQALLEEGVIYHVN--GEQAFRDKCILYNFWQDKE 208
+ L+EE + V A R + F D
Sbjct: 62 LASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDST 97
Score = 48.8 bits (116), Expect = 1e-07
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 35 SSPSVPMARAGWVLRTLLLNDESG-TLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLA 93
SS S + R + + + +G G T ++ GS LVDWL+S + A
Sbjct: 2 SSGSSGLHR----IVDKMHDTSTGIRPSPNME-QGSTY-KKTFLGSSLVDWLISS--NFA 53
Query: 94 VSRQITTGMWQALLEEGVIYH 114
SR + L+EE +
Sbjct: 54 ASRLEAVTLASMLMEENFLRP 74
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 50.9 bits (121), Expect = 3e-08
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 289 KPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
K + + + + + + + HL ++ R ++ MF GE + QGDEG ++
Sbjct: 6 KVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDA-MFPVSFIAGETVIQQGDEGDNF 64
Query: 349 YIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
Y+I QG +DV + + + G FG+LAL+ PR
Sbjct: 65 YVIDQGEMDVYVNNEWATSV-GEGGSFGELALIYGTPR 101
Score = 30.8 bits (69), Expect = 0.21
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
V QGDEG ++Y+I QG +DV + + + G FG+LAL+ P
Sbjct: 53 TVIQQGDEGDNFYVIDQGEMDVYVNNEWATSV-GEGGSFGELALIYGTP 100
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 45.1 bits (106), Expect = 3e-06
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 293 RTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIII 352
+T + ++ E + +L ++ MFE ++GE + QGD+G ++Y+I
Sbjct: 6 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDA-MFEKLVKEGEHVIDQGDDGDNFYVID 64
Query: 353 QGSVDVVIYGKGCVTSLYAGED---FGKLALVNNAPR 386
+G+ D+ + G + ++ FG+LAL+ N PR
Sbjct: 65 RGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPR 101
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 39.8 bits (92), Expect = 2e-04
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 303 EELL-HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361
E + L L L S R ++ V + GE + QGD S++I+ G V + +
Sbjct: 1 ESFIESLPFLKSLEVSERLKVVDV-IGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMK 59
Query: 362 GKG----------CVTSLYAGEDFGKLALVNNAPR 386
KG + G+ FG+LALV N PR
Sbjct: 60 RKGKSDIEENGAVEIARCLRGQYFGELALVTNKPR 94
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 37.0 bits (85), Expect = 0.002
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 297 DLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSV 356
D + ++ + + L +V E+ + G ++ G+ G + +++GSV
Sbjct: 5 DFVRNWQLVAAVPLFQKLGPAVLVEIVRA-LRARTVPAGAVICRIGEPGDRMFFVVEGSV 63
Query: 357 DVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
V L G FG++AL++ PR
Sbjct: 64 SVATP---NPVELGPGAFFGEMALISGEPR 90
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 37.3 bits (85), Expect = 0.002
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEA-HPRKGEILFHQGDEGKSWYIIIQGSV 356
+E +++ LL L L + + V + GE + G+ +++G +
Sbjct: 1 METMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 60
Query: 357 DVVIYGKG----CVTSLYAGEDFGKLA 379
+V K + + A +
Sbjct: 61 SIVTNAKENIYTVIEQIEAPYLIEPQS 87
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 34.8 bits (79), Expect = 0.009
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTS----LYAGEDFGKLALVNN 383
L HQG++ ++ Y I++GSV V+I + L G+ G+L L
Sbjct: 19 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE 73
Score = 30.6 bits (68), Expect = 0.26
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTS----LYAGEDFGKLALVNNAPSYQLHMY 447
+ HQG++ ++ Y I++GSV V+I + L G+ G+L L +
Sbjct: 23 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 82
Query: 448 LEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNE 492
+ + R+ P+ +++A + L+ +E
Sbjct: 83 AKTACEVAEISYKKF---RQLIQVNPDILMRLSAQMARRLQVTSE 124
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 34.8 bits (79), Expect = 0.010
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 303 EELL-HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361
EE L + L L R +A + G+ + QG+ G ++II++GS V+
Sbjct: 1 EEFLSKVSILESLDKWERLTVADA-LEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQR 59
Query: 362 GKGCVTS-----LYAGEDFGKLALVNNAPR 386
L + FG++AL+ N PR
Sbjct: 60 RSENEEFVEVGRLGPSDYFGEIALLMNRPR 89
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 33.3 bits (76), Expect = 0.020
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 248 KQLKKLQNR---YLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEE 304
+L +L ++ Y + + + E + K + EE+R+I + T E++++ E
Sbjct: 37 PRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQE-KEN 95
Query: 305 LL 306
LL
Sbjct: 96 LL 97
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 34.6 bits (79), Expect = 0.027
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 218 DIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEE 277
+ + E L+ +A A+ ++ K + L N + ++ + E +EE
Sbjct: 167 EPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLI--LNN---SHRVTIEMQPDPEKATQEE 221
Query: 278 KEEEEEERQIGKPLDRTSEDLEQIYEELLHLK 309
EE+ ++ + T EDL ++ LK
Sbjct: 222 VEEKNILEKVKAAM--TEEDLAELARATEELK 251
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein
PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Length = 194
Score = 33.5 bits (76), Expect = 0.054
Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 14/170 (8%)
Query: 142 RTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFR---DKC 198
+ +R SEL L + AV + L+E V G K
Sbjct: 22 FLLTKRPYFVSELSREL-GVGQK-AVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG 79
Query: 199 ILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYL 258
+ S+ E+A + + P + L + L +L R
Sbjct: 80 LRLEILLTPTLFGSEMYEAKGVRKSPEYEQAKELIKSQEPINVKMRELAEFLHELNER-- 137
Query: 259 PREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHL 308
+ IE+K E E+ E I + R +E+ QI EE+
Sbjct: 138 -------IREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIFRD 180
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 32.5 bits (73), Expect = 0.068
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVI----YGKGCVTSLYAGEDFGKLALVNNAPRLI 388
+ + GD ++ + II+GSV ++I + + L +G+ FG+L L
Sbjct: 18 TAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQ 77
Query: 389 ITSMVFHQGDEGKSWYI 405
S E + I
Sbjct: 78 ERSAWVRAKVECEVAEI 94
Score = 27.5 bits (60), Expect = 3.4
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVI----YGKGCVTSLYAGEDFGKLALVNNAPSYQLHM 446
S + + GD ++ + II+GSV ++I + + L +G+ FG+L L S Q
Sbjct: 21 STIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERS 80
Query: 447 Y 447
Sbjct: 81 A 81
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 32.1 bits (72), Expect = 0.096
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 313 HLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGC 365
L+ R L + +K +F +GD + + + +G + ++ G
Sbjct: 11 LLNEEERELLDKE-IQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYG 62
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 32.0 bits (72), Expect = 0.19
Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 190 GEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQ 249
G QA + + Q + +E E + A + +A +L + RK
Sbjct: 171 GIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKN 230
Query: 250 LKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLH 307
+ ++ + + +++ +K E ++ + +E++ RT Q E+LL
Sbjct: 231 EQMMEQKERSYQ---EHLKQLTEKMENDRVQLLKEQE------RTLALKLQEQEQLLK 279
Score = 32.0 bits (72), Expect = 0.23
Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 180 LEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPD 239
EE + ++ +++ D IL E + AE+ + + L + R+
Sbjct: 174 AEEILQTYLKSKESMTDA-ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 232
Query: 240 AILRYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLE 299
+ + Q Q + L +E E + +E+E+ + + ++
Sbjct: 233 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK-----EGFQKESR 287
Query: 300 QIYEELLHLK 309
+ E+ L+
Sbjct: 288 IMKNEIQDLQ 297
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 30.6 bits (69), Expect = 0.29
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 213 QATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIED 272
+ +AE EH E + + + +++L + HL +E
Sbjct: 63 AELLKHLAEKREHEREVIQKAIEE--NNNFIKMAKEKLAQKMESNK-ENREAHLAAMLER 119
Query: 273 KEEEEKEEEEEERQI 287
+E++K EE +
Sbjct: 120 LQEKDKHAEEVRKNK 134
Score = 28.7 bits (64), Expect = 1.3
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 229 ALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQ 286
A R D L I +K + R +L E + E E ++ EE
Sbjct: 31 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENN 88
Score = 27.2 bits (60), Expect = 4.3
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 213 QATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNR-YLPREYMLHLEREIE 271
+ AE +EA L R +++K +++ N + +E + +
Sbjct: 47 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 106
Query: 272 DKEE------EEKEEEEEER 285
+ E E+ +E+++
Sbjct: 107 ENREAHLAAMLERLQEKDKH 126
>d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei
[TaxId: 4839]}
Length = 265
Score = 30.9 bits (69), Expect = 0.41
Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 7/144 (4%)
Query: 470 FRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRN 529
FRG + + A+L + + + + L + + +++ ++ Y+
Sbjct: 75 FRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKV 134
Query: 530 INALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSP 589
++ + L + L S + YT+ + + +
Sbjct: 135 AVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQGQPRVGDPAFANYVVSTGIPYRRT 194
Query: 590 V-----IPFMPLLLKDLAFTHDGN 608
V +P +P F H G
Sbjct: 195 VNERDIVPHLPPAA--FGFLHAGE 216
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 139
Score = 28.9 bits (63), Expect = 1.0
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 308 LKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGC 365
+ P + R + + KG + G+E S +++G + + I +
Sbjct: 6 IIPDNFFPIEKLRNYTQMGLIRDFA-KGSAVIMPGEEITSMIFLVEGKIKLDIIFEDG 62
>d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus
[TaxId: 4844]}
Length = 265
Score = 29.4 bits (65), Expect = 1.2
Identities = 13/95 (13%), Positives = 31/95 (32%)
Query: 470 FRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRN 529
FRG N F+ ++ + ++ + L + + + Y+
Sbjct: 76 FRGTNSFRSAITDIVFNFSDYKPVKGAKVHAGFLSSYEQVVNDYFPVVQEQLTAHPTYKV 135
Query: 530 INALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYT 564
I ++ + +A L +L K+ +T
Sbjct: 136 IVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFT 170
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 28.4 bits (62), Expect = 1.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGC 365
RKGEI+ HQ D + I+++G++ +
Sbjct: 16 RKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 48
>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 99
Score = 27.7 bits (62), Expect = 1.4
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 218 DIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLERE-------I 270
D + ++EA+ L D + I R ++ + LP+E E + +
Sbjct: 24 DTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYL 83
Query: 271 EDKEEEEKEEEEEERQ 286
++ E KE EE ++
Sbjct: 84 KEVIRERKEREEWAKK 99
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 28.0 bits (61), Expect = 1.5
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 333 RKGEILFHQGDEGKS--WYIIIQGSVDVVIYGKGC 365
+ G+++ + G G Y +++G V + +
Sbjct: 6 KAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEG 40
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 27.4 bits (61), Expect = 2.6
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 219 IAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPR-------EYMLHLEREIE 271
IAE ++ AL L A I+R +L + LPR E + +L I
Sbjct: 47 IAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYIL 106
Query: 272 DKEEEEKEEEE 282
+ E KE++E
Sbjct: 107 EAEAAAKEKDE 117
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 160
Score = 27.8 bits (62), Expect = 2.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 217 QDIAEAEEHLEEALLALARRAPDAILRYILRKQL 250
+DI AE+ + +AL + +A + L L L
Sbjct: 20 RDIYYAEQQITKALPKMIEQATNRDLSQGLTSHL 53
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK
{Thermotoga maritima [TaxId: 2336]}
Length = 271
Score = 28.3 bits (62), Expect = 2.7
Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 16/192 (8%)
Query: 226 LEEALLALARRAPDAIL--RYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEE 283
+ + L ++L I+ + L +E + + + EE+ E E
Sbjct: 7 IRDCSGKLEGVTETSVLEVLLIVSRVLGI------RKEDLFLKDLGVSPTEEKRILELVE 60
Query: 284 ERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGD 343
+R G PL + E + L + R E +V + + D
Sbjct: 61 KRASGYPLHYILGEKEFMGLSFL----VEEGVFVPRPETEELVELALELIRKYGIKTVAD 116
Query: 344 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSW 403
G I + + NA R ++ F + E
Sbjct: 117 IGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR----KNAERHGVSDRFFVRKGEFLEP 172
Query: 404 YIIIQGSVDVVI 415
+ S+++++
Sbjct: 173 FKEKFASIEMIL 184
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 28.6 bits (64), Expect = 2.8
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 254 QNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSE-DLEQIYEELLHLKPL 311
+ +++PRE+ E + K+E + E+ L R ++ ++ H+K L
Sbjct: 248 EKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRV-QLVRLAKTAYVDVFINWFHIKAL 305
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia
coli [TaxId: 562]}
Length = 159
Score = 27.8 bits (62), Expect = 3.2
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 217 QDIAEAEEHLEEALLALARRAPDAILRYILRKQL 250
D AE+ L AL LAR + L L
Sbjct: 13 SDTYSAEKQLTRALAKLARATSNEKLSQAFHAHL 46
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 138
Score = 27.3 bits (60), Expect = 3.2
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 263 MLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRREL 322
+ + +++ EE +K +++ E + T D+ L + PL + +
Sbjct: 3 IESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPG-- 60
Query: 323 AGVVMFEAHPRKGEILFHQGDE-GKSWYIIIQ 353
+ P E G+E + W +
Sbjct: 61 ----LGIMLPTPSEDQLKIGEEKIRRWLAALN 88
>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 308
Score = 27.9 bits (62), Expect = 3.8
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 7/112 (6%)
Query: 215 TAQDIAE-AEEHL------EEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLE 267
+D+ AE E+A+ L R ++ + L++ + R + E
Sbjct: 68 KNRDVERIAELSAKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIGVRGELHGTE 127
Query: 268 REIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVR 319
+ + E EE I + E+L + +EL + + SV+
Sbjct: 128 VDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRSEVRKIVESVK 179
>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima
[TaxId: 2336]}
Length = 172
Score = 27.4 bits (61), Expect = 3.8
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 5/31 (16%)
Query: 299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFE 329
+ + L K H SN L ++
Sbjct: 90 GLMIKTLKSGKNGEHASN-----LGAIIAHR 115
>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
30308]}
Length = 174
Score = 27.4 bits (61), Expect = 4.6
Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 450 QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNK 509
Q +Y+ T+ + + + + L +++ W + +++ K
Sbjct: 22 QTTLYYGLTSNGLP-----------KAKIVAVEL-------SDLSVWKLCAKFRLSAHMK 63
Query: 510 RVQILRKMIKLA--AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL 566
+ C++YR + + S+ A R+ + W +LPS ++ L
Sbjct: 64 ------AKAAIGWGKNCQQYRAMLEASTGNLQ-SHPAA-RVDIKWGRLPSSLQRAKNAL 114
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 26.3 bits (58), Expect = 4.9
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 209 GSSSQATAQDIAEAEEHL---EEALLALARRAPDAILRYILRKQLKKLQN--RYLPREYM 263
GS + + E +E+L + LL L + D L + L L+ + M
Sbjct: 1 GSHMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSM 60
Query: 264 LHLEREIED-----KEEEEKEEEEEERQIGKPLDRTSEDLEQI 301
L +E+ + E K + +I +D + +++I
Sbjct: 61 AKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDKI 103
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 26.7 bits (59), Expect = 6.1
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 219 IAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQN--RYLPREYMLHLEREIEDKEEE 276
+E LE + L + K L R+ RE + +
Sbjct: 21 NSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRE----TIASVRSLLLQ 76
Query: 277 EKEEEEEERQIGKPLDRTSEDLEQIYEEL 305
+K + E + T+E+ + + L
Sbjct: 77 KKLHKFELACLANLCPETAEESKALIPSL 105
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 25.1 bits (55), Expect = 7.0
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 219 IAEAEEHLEEALLALARRAPDAILRYILR-KQLKKLQNRYLPREYMLHLEREIEDKEEEE 277
+A E + E ++ R+ Y++R K + + P +++++ E I D
Sbjct: 1 MASEELYEVERIVD-KRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRH 59
Query: 278 KEEEEE 283
E+++E
Sbjct: 60 TEKQKE 65
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 27.0 bits (60), Expect = 7.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 267 EREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEEL 305
R E+ KE EEEER+ K L D ++YE L
Sbjct: 118 GRAKLRIEKAMKEYEEEERK--KRLGPGGLDPVEVYESL 154
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 25.4 bits (56), Expect = 8.8
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 265 HLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLE 299
L +++ +E E++ + L SED +
Sbjct: 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTD 39
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 26.1 bits (56), Expect = 9.6
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 333 RKGEILFHQGDEGKSWYIIIQGSVD 357
KG ++ + ++++ G +
Sbjct: 28 AKGSLVCTGEGDENGVFVVVDGRLR 52
>d1r0ua_ b.60.1.5 (A:) Hypothetical protein YwiB {Bacillus subtilis
[TaxId: 1423]}
Length = 146
Score = 26.3 bits (58), Expect = 9.7
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 390 TSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLE 449
+ F G + Y + G +++ K + L E+ G++++ +Y +H+ E
Sbjct: 79 MNQRFVTGASTIAKYKMSFGELELKTSTKSIQSDL--DEEKGRISI-----AYDMHVGDE 131
Query: 450 QMAVY 454
Q ++
Sbjct: 132 QEHLH 136
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 26.5 bits (58), Expect = 9.8
Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 5/119 (4%)
Query: 176 WQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALAR 235
A L A +D Q + Q AQ + +
Sbjct: 163 LDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQ 222
Query: 236 RAPDAILRY-ILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDR 293
RY + ++ + L + + I + ++ E LDR
Sbjct: 223 DDEAWQTRYQAYAAERDRIAAQGLAPQ---DRDARIA-QLRQQTFTAPGEAIRAASLDR 277
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing
protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Length = 217
Score = 26.4 bits (58), Expect = 9.9
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 344 EGKSWYIIIQGSVDVVIYGKGCVTSLYAG--EDFGKLALVNNAPRLIITSMVFHQGDEGK 401
+ + ++ + G+ D+ I G L G GK + ++ I S+ H
Sbjct: 92 KAQKRFLKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKV 151
Query: 402 SW 403
W
Sbjct: 152 GW 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,681,612
Number of extensions: 131772
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 73
Length of query: 714
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 622
Effective length of database: 1,144,436
Effective search space: 711839192
Effective search space used: 711839192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)