BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11553
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 216 bits (550), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 122/140 (87%)
Query: 5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+C
Sbjct: 478 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 537
Query: 65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR +
Sbjct: 538 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 597
Query: 125 KLQSPVIPFMPLLLKGKTWS 144
KL+ P+IPFMPLL+K T++
Sbjct: 598 KLEPPLIPFMPLLIKDMTFT 617
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 215 bits (548), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 122/140 (87%)
Query: 5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+C
Sbjct: 783 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 842
Query: 65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR +
Sbjct: 843 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 902
Query: 125 KLQSPVIPFMPLLLKGKTWS 144
KL+ P+IPFMPLL+K T++
Sbjct: 903 KLEPPLIPFMPLLIKDMTFT 922
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 215 bits (547), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 122/140 (87%)
Query: 5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+C
Sbjct: 783 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 842
Query: 65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR +
Sbjct: 843 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 902
Query: 125 KLQSPVIPFMPLLLKGKTWS 144
KL+ P+IPFMPLL+K T++
Sbjct: 903 KLEPPLIPFMPLLIKDMTFT 922
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 19 ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLM 78
+ N+ F RRFN++ +WV+ EIL +L R +IL +K+A E N+++L +V+
Sbjct: 69 LAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVS 128
Query: 79 GLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFMPLL 137
L + + RL+ TW L K K T+ +L+ L+ N++ R+ + L+ P IP++ +
Sbjct: 129 ALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIY 188
Query: 138 L 138
L
Sbjct: 189 L 189
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 55/111 (49%)
Query: 28 RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSR 87
+ FN + ++ +EI+ ++ R + K + +A C+ N NA+ + ++ A+ R
Sbjct: 51 KHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFR 110
Query: 88 LSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL 138
L TW K+ ++K +L+ L+ + R+++ P +P++ + L
Sbjct: 111 LKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYL 161
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 137 LL 138
L
Sbjct: 736 YL 737
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 818 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 877
Query: 80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 878 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 932
Query: 137 LL 138
L
Sbjct: 933 YL 934
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 137 LL 138
L
Sbjct: 736 YL 737
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 251 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 310
Query: 80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 311 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 365
Query: 137 LL 138
L
Sbjct: 366 YL 367
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 259 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 318
Query: 80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 319 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 373
Query: 137 LL 138
L
Sbjct: 374 YL 375
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 137 LL 138
L
Sbjct: 368 YL 369
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
+ NL +R + W I+ +L +RV ++ ++I++ +E N N + V+
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
+++ V RL T++++PS+ KK E L S++H Y++ ++KL+S P +PF +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 137 LL 138
L
Sbjct: 368 YL 369
>pdb|3T6G|A Chain A, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
pdb|3T6G|C Chain C, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
Length = 331
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 26 FLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVA 84
L RF+ + + +IL T S +R +L K I+LAA + FA +MG ++A
Sbjct: 99 LLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMA 158
Query: 85 -VSRLSLTW 92
+SRL TW
Sbjct: 159 QISRLEQTW 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,771,986
Number of Sequences: 62578
Number of extensions: 121382
Number of successful extensions: 359
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 13
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)