Query psy11553
Match_columns 146
No_of_seqs 134 out of 1034
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:28:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ije_S Guanine nucleotide-rele 100.0 3.2E-48 1.1E-52 294.2 12.2 145 1-145 24-168 (240)
2 3qxl_A RAS-specific guanine nu 100.0 1.3E-47 4.5E-52 295.3 11.1 145 1-145 51-196 (271)
3 4f7z_A RAP guanine nucleotide 100.0 2.9E-44 1E-48 315.4 11.0 145 1-145 779-923 (999)
4 3cf6_E RAP guanine nucleotide 100.0 4.9E-43 1.7E-47 298.6 12.5 145 1-145 474-618 (694)
5 2ii0_A SOS-1, SON of sevenless 100.0 5.8E-42 2E-46 282.4 11.3 143 1-145 240-382 (490)
6 3ksy_A SOS-1, SON of sevenless 100.0 1.1E-39 3.9E-44 287.8 10.6 143 1-145 799-941 (1049)
7 3t6g_A SH2 domain-containing p 99.8 2.8E-18 9.7E-23 132.9 9.3 110 24-139 97-214 (331)
8 3t6a_A Breast cancer anti-estr 99.7 1.4E-18 4.9E-23 134.6 7.2 109 24-138 96-214 (333)
9 2rpa_A Katanin P60 ATPase-cont 58.0 12 0.00042 22.6 3.5 54 54-108 12-74 (78)
10 2apo_B Ribosome biogenesis pro 47.2 8.9 0.0003 22.1 1.5 16 110-125 36-51 (60)
11 2aus_D NOP10, ribosome biogene 45.0 10 0.00034 21.9 1.5 16 110-125 35-50 (60)
12 1v54_E Cytochrome C oxidase po 39.1 23 0.00079 22.8 2.7 45 62-107 53-97 (109)
13 1pq1_B BCL2-like protein 11; B 36.3 11 0.00036 18.8 0.6 17 58-74 6-23 (33)
14 3cqc_A Nuclear pore complex pr 33.7 95 0.0032 23.0 5.7 49 46-94 26-74 (270)
15 2wh6_B BCL-2-like protein 11; 33.5 4.5 0.00015 19.0 -1.0 12 58-69 6-17 (26)
16 3kj0_B BCL-2-like protein 11; 30.9 15 0.00051 17.3 0.6 15 58-72 8-23 (27)
17 2cwy_A Hypothetical protein TT 30.2 56 0.0019 20.2 3.4 51 20-70 2-57 (94)
18 1d02_A Type II restriction enz 30.2 15 0.00051 26.1 0.7 38 104-142 120-157 (202)
19 1gt0_D Transcription factor SO 30.0 36 0.0012 19.9 2.4 29 80-108 28-57 (80)
20 1hry_A Human SRY; DNA, DNA-bin 29.6 28 0.00097 20.1 1.8 29 80-108 30-59 (76)
21 1j46_A SRY, sex-determining re 29.2 38 0.0013 20.2 2.4 30 79-108 29-59 (85)
22 4a3n_A Transcription factor SO 28.7 35 0.0012 19.3 2.1 29 80-108 28-57 (71)
23 3u2b_C Transcription factor SO 28.0 36 0.0012 19.8 2.1 29 80-108 28-57 (79)
24 2ket_A Cathelicidin-6; antimic 27.6 16 0.00054 17.0 0.3 19 116-134 3-24 (27)
25 1i11_A Transcription factor SO 27.5 42 0.0014 19.7 2.4 28 80-107 30-58 (81)
26 2lef_A LEF-1 HMG, protein (lym 26.6 42 0.0014 19.9 2.3 29 80-108 28-57 (86)
27 1wz6_A HMG-box transcription f 26.5 38 0.0013 19.9 2.1 29 80-108 33-62 (82)
28 2e6o_A HMG box-containing prot 24.8 43 0.0015 20.0 2.1 29 80-108 43-72 (87)
29 2crj_A SWI/SNF-related matrix- 24.7 52 0.0018 19.9 2.5 29 80-108 33-62 (92)
30 2y69_E Cytochrome C oxidase su 24.5 54 0.0019 22.3 2.7 45 62-107 96-140 (152)
31 1k99_A Upstream binding factor 24.4 48 0.0017 20.4 2.3 41 80-125 36-77 (99)
32 3ffl_A Anaphase-promoting comp 24.2 64 0.0022 22.4 3.1 24 59-82 127-150 (167)
33 1hme_A High mobility group pro 23.9 43 0.0015 19.3 1.9 29 80-108 32-61 (77)
34 2ijq_A Hypothetical protein; s 23.8 1.8E+02 0.0061 19.9 5.5 57 21-77 34-98 (161)
35 3mab_A Uncharacterized protein 23.7 1.3E+02 0.0044 18.5 4.2 49 49-105 32-80 (93)
36 4atg_A TAF6; transcription, TF 23.2 71 0.0024 22.7 3.2 47 94-140 4-51 (196)
37 3f27_D Transcription factor SO 22.8 48 0.0017 19.4 2.0 29 80-108 32-61 (83)
38 1avo_B 11S regulator; proteaso 21.3 65 0.0022 21.6 2.6 25 21-45 17-41 (140)
No 1
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=3.2e-48 Score=294.20 Aligned_cols=145 Identities=18% Similarity=0.357 Sum_probs=141.9
Q ss_pred CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL 80 (146)
Q Consensus 1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL 80 (146)
|+|.||++++|++.+...++|||.+++++||.++.||+++||.+++.++|++++++||+||.+|+++|||||++||++||
T Consensus 24 I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~~~~l~Nfns~~aI~~gL 103 (240)
T 2ije_S 24 IPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSI 103 (240)
T ss_dssp CCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHh
Confidence 78999999999998877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553 81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR 145 (146)
Q Consensus 81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~ 145 (146)
++++|+||++||+.++++.++.|++|+.++++++||++||++++++++|||||+|+||+||+|++
T Consensus 104 ~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~ 168 (240)
T 2ije_S 104 NRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIE 168 (240)
T ss_dssp TSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 2
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=295.26 Aligned_cols=145 Identities=28% Similarity=0.523 Sum_probs=141.0
Q ss_pred CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL 80 (146)
Q Consensus 1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL 80 (146)
|+|.||+++.|++++....+|||.+++++||.++.||+.+||.+++.++|++++++||+||.+|+++|||||++||++||
T Consensus 51 I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~l~Nfnsl~AIisgL 130 (271)
T 3qxl_A 51 IQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSAL 130 (271)
T ss_dssp CCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHc
Confidence 78999999999988777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCC-CCcccccchhhhhhhhhc
Q psy11553 81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPLLLKGKTWSR 145 (146)
Q Consensus 81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~-~p~IP~lg~~l~dl~~i~ 145 (146)
++++|+||++||+.|+++.++.|++|+.++++++||++||+.+++.. +|||||+|+||+||+|++
T Consensus 131 ~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IPflg~~L~DL~fi~ 196 (271)
T 3qxl_A 131 QSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYID 196 (271)
T ss_dssp TSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 899999999999999986
No 3
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=2.9e-44 Score=315.42 Aligned_cols=145 Identities=64% Similarity=1.119 Sum_probs=142.8
Q ss_pred CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL 80 (146)
Q Consensus 1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL 80 (146)
|+|.||++++|++++....+|||.+++++||.+++||+.+||.++++++|+++|++||+||.+|+++|||||++||++||
T Consensus 779 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l 858 (999)
T 4f7z_A 779 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGL 858 (999)
T ss_dssp CCHHHHHHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHT
T ss_pred CCHHHHHHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 78999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553 81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR 145 (146)
Q Consensus 81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~ 145 (146)
++++|+||++||+.||++.++.|++|+.++++++||++||.+++++++|||||+|+||+||+|+|
T Consensus 859 ~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~ 923 (999)
T 4f7z_A 859 SNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTH 923 (999)
T ss_dssp TSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeeceehHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 4
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=4.9e-43 Score=298.64 Aligned_cols=145 Identities=64% Similarity=1.119 Sum_probs=142.3
Q ss_pred CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL 80 (146)
Q Consensus 1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL 80 (146)
|+|.||++++|++.+....+|||.+++++||.++.||+++||.++++++|++++++||+||.+|+++|||||++||++||
T Consensus 474 I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL 553 (694)
T 3cf6_E 474 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGL 553 (694)
T ss_dssp SCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 78999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553 81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR 145 (146)
Q Consensus 81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~ 145 (146)
++++|+||++||+.|+++.++.|++|+.++++++||++||.++++.++|||||+|+||+||+|++
T Consensus 554 ~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg~~L~DL~fi~ 618 (694)
T 3cf6_E 554 SNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTH 618 (694)
T ss_dssp TSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 5
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=5.8e-42 Score=282.36 Aligned_cols=143 Identities=22% Similarity=0.394 Sum_probs=137.6
Q ss_pred CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL 80 (146)
Q Consensus 1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL 80 (146)
|+|.||+++.|++.+....+||+.+++++||.++.||+.+||.+++.++|+++|++||+||.+|+++|||||++||++||
T Consensus 240 I~~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL 319 (490)
T 2ii0_A 240 VQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAM 319 (490)
T ss_dssp CCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 78999999999998877789999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553 81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR 145 (146)
Q Consensus 81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~ 145 (146)
++++|+||++||+.|+++.++.|++|..+. ++||++||..+++.++|||||+|+||+||+|++
T Consensus 320 ~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~--~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~ 382 (490)
T 2ii0_A 320 NSSPVYRLDHTFEQIPSRQKKILEEAHELS--EDHYKKYLAKLRSINPPCVPFFGIYLTNILKTE 382 (490)
T ss_dssp TSHHHHTCHHHHHHSCHHHHHHHHHHHHHH--HHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHCCHHHHHHHHHHHHhc--hHHHHHHHHHHhccCCCcccCcHHHHHHHHHHH
Confidence 999999999999999999999999998873 589999999999999999999999999999986
No 6
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=1.1e-39 Score=287.80 Aligned_cols=143 Identities=22% Similarity=0.399 Sum_probs=138.5
Q ss_pred CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL 80 (146)
Q Consensus 1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL 80 (146)
|+|.||+++.|++.+....+||+.+++.+||.+++||+.+||.++++++|+++|++||+||.+|+++|||||++||++||
T Consensus 799 I~p~E~l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL 878 (1049)
T 3ksy_A 799 VQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAM 878 (1049)
T ss_dssp CCGGGGSSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHc
Confidence 78999999999998877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553 81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR 145 (146)
Q Consensus 81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~ 145 (146)
++++|+||++||+.|+++.++.|++|..+ +++||++||..+++.++|||||+|+||+||+|++
T Consensus 879 ~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~ 941 (1049)
T 3ksy_A 879 NSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTE 941 (1049)
T ss_dssp HSHHHHTCTTTTTSSCHHHHHHHHHHHTT--THHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHHCCHHHHHHHHHHHhh--chHHHHHHHHHHhhCCCCccceeHHHHHHHHHHH
Confidence 99999999999999999999999999998 5689999999999999999999999999999986
No 7
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=132.86 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHhcchhhhhchHHhhccCCcchHH
Q psy11553 24 DVFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKK 101 (146)
Q Consensus 24 ~~~~~~~n~ls~wv~~~IL~~~-~~~~Ra~~i~~~I~va~~~~-~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~~~ 101 (146)
..+++++|.+..||+.+||.|. +.++|+.++.+||+||.+|. ++||+++++||+.||+++.|.||++||..+++++.+
T Consensus 97 ldlleR~~~l~~~va~~IL~c~g~~~~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te 176 (331)
T 3t6g_A 97 LDLLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTE 176 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHH
T ss_pred HHHHHHhcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhH
Confidence 4689999999999999999997 89999999999999999999 999999999999999999999999999999999998
Q ss_pred HHHHHHcccCCCchHHHHHHHHhcCC------CCcccccchhhh
Q psy11553 102 TYTELEALIDPSKNHRAYRQAVSKLQ------SPVIPFMPLLLK 139 (146)
Q Consensus 102 ~~~~l~~l~~~~~n~~~yR~~l~~~~------~p~IP~lg~~l~ 139 (146)
.+-.+++.+.| ..+.+.++. .-|||++..+++
T Consensus 177 ~Ai~yEk~LkP------~~k~lneg~~~~~~~~~~~Phl~Pl~~ 214 (331)
T 3t6g_A 177 GAILYEKKLKP------FLKSLNEGKEGPPLSNTTFPHVLPLIT 214 (331)
T ss_dssp HHHHHHHTHHH------HHHHHHTTCCCSCGGGCSBCCCHHHHH
T ss_pred HHHHHHHHhhH------HHHHHhCCCCCCCCCCCccchHHHHHH
Confidence 87666665544 334444443 248898876654
No 8
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=134.58 Aligned_cols=109 Identities=22% Similarity=0.345 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHhcchhhhhchHHhhccCCcchHH
Q psy11553 24 DVFLRRFNEIQYWVITEILLVTS-LNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKK 101 (146)
Q Consensus 24 ~~~~~~~n~ls~wv~~~IL~~~~-~~~Ra~~i~~~I~va~~~~-~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~~~ 101 (146)
..+++++|.++.||+.+||.|.. .++|+.++.+||++|.+|. ++||++|++||+.||+++.|+||++||..+++++++
T Consensus 96 ldlleR~~~l~~wva~~IL~C~~~~~eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te 175 (333)
T 3t6a_A 96 LDIIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQ 175 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHH
T ss_pred hHHHHHhcccHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhH
Confidence 36899999999999999999865 7899999999999999999 899999999999999999999999999999999998
Q ss_pred HHHHHHcccCCCchHHHHHHHHhcCC--------CCcccccchhh
Q psy11553 102 TYTELEALIDPSKNHRAYRQAVSKLQ--------SPVIPFMPLLL 138 (146)
Q Consensus 102 ~~~~l~~l~~~~~n~~~yR~~l~~~~--------~p~IP~lg~~l 138 (146)
.+-.+++.++| ..+.+.+.. .-|+|++-.++
T Consensus 176 ~ai~yEk~LkP------~~k~lneG~~~~~~~~~~~t~Phv~Pl~ 214 (333)
T 3t6a_A 176 TAILYEKQLKP------FSKLLHEGRESTCVPPNNVSVPLLMPLV 214 (333)
T ss_dssp HHHHHHHTHHH------HHHHHHTTCGGGSCCTTCCSBCCCHHHH
T ss_pred HHHHHHHHhhH------HHHHhhCCCCCCCCCCCCccchhHHHHH
Confidence 76666665544 333333321 24788886554
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=58.00 E-value=12 Score=22.65 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhcchhhhhc---------hHHhhccCCcchHHHHHHHHc
Q psy11553 54 LRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSR---------LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 54 i~~~I~va~~~~~l~Nf~s~~aI~~aL~~~~I~R---------Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
|..-++.|..+.-+|||.+....+.|.... |.| .+.-|..+.++..+.++....
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q-I~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~ 74 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ-MNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999988876632 222 123455555554444444443
No 10
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=47.18 E-value=8.9 Score=22.14 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=14.4
Q ss_pred cCCCchHHHHHHHHhc
Q psy11553 110 IDPSKNHRAYRQAVSK 125 (146)
Q Consensus 110 ~~~~~n~~~yR~~l~~ 125 (146)
+||++.|..||..+++
T Consensus 36 fSp~Dky~~yR~~~kk 51 (60)
T 2apo_B 36 FSLEDRWGKYRRMLKR 51 (60)
T ss_dssp CCTTCTTHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHH
Confidence 6999999999999876
No 11
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=44.98 E-value=10 Score=21.92 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=14.5
Q ss_pred cCCCchHHHHHHHHhc
Q psy11553 110 IDPSKNHRAYRQAVSK 125 (146)
Q Consensus 110 ~~~~~n~~~yR~~l~~ 125 (146)
+||++.|..||..+++
T Consensus 35 fSP~Dky~~yR~~lKk 50 (60)
T 2aus_D 35 FSPEDPYGEYRRRLKR 50 (60)
T ss_dssp CCSCCTTHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHH
Confidence 6999999999999986
No 12
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=39.11 E-value=23 Score=22.85 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHhhhcCChHHHHHHHHhcchhhhhchHHhhccCCcchHHHHHHHH
Q psy11553 62 AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELE 107 (146)
Q Consensus 62 ~~~~~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~~~~~~~l~ 107 (146)
..|+.+|||.+++-++-|+..-+-.+ ++.|..+-++.+-.+++|.
T Consensus 53 rAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqElkPtl~ELG 97 (109)
T 1v54_E 53 RACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELG 97 (109)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhhHHHHhC
Confidence 56889999999999999988665544 4456555555555555553
No 13
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=36.31 E-value=11 Score=18.76 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=11.5
Q ss_pred HHHHHHhhhcCC-hHHHH
Q psy11553 58 IKLAAYCKEYRN-INALF 74 (146)
Q Consensus 58 I~va~~~~~l~N-f~s~~ 74 (146)
|.||++++.+|+ ||..+
T Consensus 6 iwIAQELRRIGDeFNa~y 23 (33)
T 1pq1_B 6 IRIAQELRRIGDEFNETY 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhccc
Confidence 567888888776 55533
No 14
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=33.66 E-value=95 Score=23.03 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhcchhhhhchHHhhcc
Q psy11553 46 SLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDK 94 (146)
Q Consensus 46 ~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~ 94 (146)
.++.|..++..-..+..+....|..+++.....-+....|.++...|+.
T Consensus 26 ~~~q~~eal~~~n~l~R~FL~~gkl~AAr~l~~rlp~~~i~~~~~~~~~ 74 (270)
T 3cqc_A 26 DPAQRAEALKQGNAIMRKFLASKKHEAAKEVFVKIPQDSIAEIYNQCEE 74 (270)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCTTHHHHHC-----
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHCChHHHHHHHhcccc
Confidence 3479999999999999999999999999999999999999888777773
No 15
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=33.51 E-value=4.5 Score=19.01 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=7.3
Q ss_pred HHHHHHhhhcCC
Q psy11553 58 IKLAAYCKEYRN 69 (146)
Q Consensus 58 I~va~~~~~l~N 69 (146)
+.||++++.+|+
T Consensus 6 ~~iAqELRRIGD 17 (26)
T 2wh6_B 6 IWIAQELRRIGD 17 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 446677766654
No 16
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=30.90 E-value=15 Score=17.29 Aligned_cols=15 Identities=27% Similarity=0.209 Sum_probs=8.6
Q ss_pred HHHHHHhhhcCC-hHH
Q psy11553 58 IKLAAYCKEYRN-INA 72 (146)
Q Consensus 58 I~va~~~~~l~N-f~s 72 (146)
|.+|++++.+|+ ||.
T Consensus 8 ~wiAqELRRIGDeFN~ 23 (27)
T 3kj0_B 8 IWYAQELRRIGDEFNA 23 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 346677766655 443
No 17
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.24 E-value=56 Score=20.17 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHhh--hcCCh
Q psy11553 20 TANLDVFLRRFNEIQYWVITEILLVT---SLNKRVQILRKMIKLAAYCK--EYRNI 70 (146)
Q Consensus 20 ~pni~~~~~~~n~ls~wv~~~IL~~~---~~~~Ra~~i~~~I~va~~~~--~l~Nf 70 (146)
.|++...+..||.=-.|-++++|..- .+..+...+.-+|++|-.+. ..||.
T Consensus 2 ~~~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~ 57 (94)
T 2cwy_A 2 VPDWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP 57 (94)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH
Confidence 36788889999998888888988642 45677889999999998886 46675
No 18
>1d02_A Type II restriction enzyme MUNI; alpha/beta protein, protein-DNA complex, distorted double HE hydrolase-DNA complex; HET: DNA; 1.70A {Mycoplasma} SCOP: c.52.1.8
Probab=30.19 E-value=15 Score=26.07 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhh
Q psy11553 104 TELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKT 142 (146)
Q Consensus 104 ~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~ 142 (146)
+++++++.| +=++.||..-.-..++.+||--++..|||
T Consensus 120 ER~CK~fTp-gl~k~~r~~~~i~~~~~lPFw~V~~gdIt 157 (202)
T 1d02_A 120 ERSCKLFTP-GLLKAYRTIGGINDEEILPFWVVFEGDIT 157 (202)
T ss_dssp GGGGGGGSH-HHHHHHHHHHCCCCTTSCSEEEEEESGGG
T ss_pred hhhHhhcCH-HHHHHHHHHcCCCCCCcCceeEEEecccc
Confidence 456777776 55788887765445689999999998887
No 19
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=29.99 E-value=36 Score=19.87 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=21.2
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.++..
T Consensus 28 ~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 57 (80)
T 1gt0_D 28 MHNSEISKRLGAEWKLLSETEKRPFIDEAK 57 (80)
T ss_dssp SCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455544 667899999999988877654
No 20
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=29.60 E-value=28 Score=20.11 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.2
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.++-.
T Consensus 30 ~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 59 (76)
T 1hry_A 30 MRNSEISKQLGYQWKMLTEAEKWPFFQEAQ 59 (76)
T ss_dssp CSSSHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHhCCHHHHHHHHHHHH
Confidence 44455554 667899999999988876654
No 21
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=29.18 E-value=38 Score=20.16 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=21.8
Q ss_pred hcchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 79 GLSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 79 aL~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+++...|.+ |-..|..++.+.++.|.++..
T Consensus 29 ~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 59 (85)
T 1j46_A 29 RMRNSEISKQLGYQWKMLTEAEKWPFFQEAQ 59 (85)
T ss_dssp TSCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 345555554 667899999999988877654
No 22
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=28.66 E-value=35 Score=19.28 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=20.4
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.+.-.
T Consensus 28 ~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 57 (71)
T 4a3n_A 28 LHNAELSKMLGKSWKALTLAEKRPFVEEAE 57 (71)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33445544 667899999999888876543
No 23
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=27.98 E-value=36 Score=19.78 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=21.2
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.+.-.
T Consensus 28 ~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 57 (79)
T 3u2b_C 28 MHNAEISKRLGKRWKLLKDSDKIPFIQEAE 57 (79)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455554 667899999999988876653
No 24
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=27.61 E-value=16 Score=16.96 Aligned_cols=19 Identities=42% Similarity=0.847 Sum_probs=9.8
Q ss_pred HHHHHHHHhcC---CCCccccc
Q psy11553 116 HRAYRQAVSKL---QSPVIPFM 134 (146)
Q Consensus 116 ~~~yR~~l~~~---~~p~IP~l 134 (146)
|+.+|...++. -.|.||.+
T Consensus 3 fkrfrkkfkklfkklspvipll 24 (27)
T 2ket_A 3 FKRFRKKFKKLFKKLSPVIPLL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHHHHHHHHHHhcCcccchh
Confidence 44455444332 25777765
No 25
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.46 E-value=42 Score=19.67 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=19.6
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHH
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELE 107 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~ 107 (146)
+....|.+ |-..|..++.+.++.|.+..
T Consensus 30 ~~~~eisk~lg~~Wk~ls~eeK~~y~~~A 58 (81)
T 1i11_A 30 MHNSNISKILGSRWKAMTNLEKQPYYEEQ 58 (81)
T ss_dssp CCHHHHHHHHHHHHTTSCSGGGHHHHHHH
T ss_pred CCHHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 44455554 66789999998888776543
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.63 E-value=42 Score=19.95 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=20.9
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
++...|.+ |-..|..++.+.++.|.++..
T Consensus 28 ~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 57 (86)
T 2lef_A 28 KESAAINQILGRRWHALSREEQAKYYELAR 57 (86)
T ss_dssp CCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44445544 667899999999988876654
No 27
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=26.51 E-value=38 Score=19.92 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=20.5
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.++-.
T Consensus 33 ~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 62 (82)
T 1wz6_A 33 LDNRGATKILADWWAVLDPKEKQKYTDMAK 62 (82)
T ss_dssp SCTTHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 34445543 677899999999888876543
No 28
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=24.78 E-value=43 Score=20.00 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=20.6
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.++-.
T Consensus 43 ~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 72 (87)
T 2e6o_A 43 KDNRAISVILGDRWKKMKNEERRMYTLEAK 72 (87)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 34445543 667899999999988876644
No 29
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=24.72 E-value=52 Score=19.86 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=21.4
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.+.-.
T Consensus 33 ~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 62 (92)
T 2crj_A 33 LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 62 (92)
T ss_dssp CCHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455554 677899999999988876654
No 30
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.51 E-value=54 Score=22.31 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHhhhcCChHHHHHHHHhcchhhhhchHHhhccCCcchHHHHHHHH
Q psy11553 62 AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELE 107 (146)
Q Consensus 62 ~~~~~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~~~~~~~l~ 107 (146)
..|+.+|||-+..=|+-|+...+-.+ ++.|..+-++.+-.+++|.
T Consensus 96 rAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~lqElkPtl~ELG 140 (152)
T 2y69_E 96 RACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELG 140 (152)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHhhHHHHhC
Confidence 45789999999999998887665444 4445555555555555553
No 31
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=24.42 E-value=48 Score=20.45 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=27.1
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSK 125 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~ 125 (146)
+....|.+ |-..|..++.+.++.|.+.-.- .-..|...+..
T Consensus 36 ~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~-----~k~~Y~~e~~~ 77 (99)
T 1k99_A 36 MSNLDLTKILSKKYKELPEKKKMKYIQDFQR-----EKQEFERNLAR 77 (99)
T ss_dssp SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHH-----HHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 44455544 6778999999999988876652 23445555543
No 32
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=24.23 E-value=64 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred HHHHHhhhcCChHHHHHHHHhcch
Q psy11553 59 KLAAYCKEYRNINALFAVLMGLSN 82 (146)
Q Consensus 59 ~va~~~~~l~Nf~s~~aI~~aL~~ 82 (146)
++|.++.++++++.+.+++.|+..
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHCCHHHHHHHHhcCCc
Confidence 488889999999999999988764
No 33
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=23.85 E-value=43 Score=19.32 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=20.8
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|...-.
T Consensus 32 ~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 61 (77)
T 1hme_A 32 LSIGDVAKKLGEMWNNTAADDKQPYEKKAA 61 (77)
T ss_dssp CCHHHHHHHHHHHHHHSCGGGSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455544 667899999998888876654
No 34
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.81 E-value=1.8e+02 Score=19.88 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCC-----CChhHHHHHHHHHHH-HHHHhh--hcCChHHHHHHH
Q psy11553 21 ANLDVFLRRFNEIQYWVITEILLV-----TSLNKRVQILRKMIK-LAAYCK--EYRNINALFAVL 77 (146)
Q Consensus 21 pni~~~~~~~n~ls~wv~~~IL~~-----~~~~~Ra~~i~~~I~-va~~~~--~l~Nf~s~~aI~ 77 (146)
+.+...+..||.=-.|-++++|.. +...+....+.-+|| +|-.+. +.||..++...+
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll 98 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLF 98 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 578899999999888888898853 122224788999999 877775 679988877665
No 35
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=23.67 E-value=1.3e+02 Score=18.55 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHHHhcchhhhhchHHhhccCCcchHHHHHH
Q psy11553 49 KRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTE 105 (146)
Q Consensus 49 ~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~~~~~~~ 105 (146)
......+-|.++-.. -.--+++.++++.+|++.. -|..+|++.++.+.+
T Consensus 32 r~~Ga~~ay~rLk~~-~~~~~~~~L~aL~gAi~G~-------~w~~l~~~~K~~L~~ 80 (93)
T 3mab_A 32 KDVGSKEAFLRIWEN-DSSVCMSELYALEGAVQGI-------RWHGLDEAKKIELKK 80 (93)
T ss_dssp HHHCHHHHHHHHHHH-CTTCCHHHHHHHHHHHHTS-------CGGGSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHcCC-------cHHHCCHHHHHHHHH
Confidence 455666777777543 3445589999999999873 588888877765444
No 36
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.20 E-value=71 Score=22.68 Aligned_cols=47 Identities=11% Similarity=0.214 Sum_probs=28.6
Q ss_pred cCCcchHHHHHHHHcccCCCchHHHHHHHHhcCC-CCcccccchhhhh
Q psy11553 94 KLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPLLLKG 140 (146)
Q Consensus 94 ~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~-~p~IP~lg~~l~d 140 (146)
.++++.+..|++..+.+.....-.++...-.+.+ .+.+||+-.|+.|
T Consensus 4 ~LS~Elq~yf~~It~a~~~~~r~~aL~sL~~D~gL~~LlPyf~~fI~~ 51 (196)
T 4atg_A 4 MLPKELQLYFDKILSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISE 51 (196)
T ss_dssp GSCHHHHHHHHHHHHHHTSTTHHHHHHHHHHCSSCTTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCChhhhHHHHHHHHHH
Confidence 3677788889998887765221111211112222 6899999877766
No 37
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=22.83 E-value=48 Score=19.41 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=20.7
Q ss_pred cchhhhhc-hHHhhccCCcchHHHHHHHHc
Q psy11553 80 LSNVAVSR-LSLTWDKLPSKSKKTYTELEA 108 (146)
Q Consensus 80 L~~~~I~R-Lk~tw~~l~~~~~~~~~~l~~ 108 (146)
+....|.+ |-..|..++.+.++.|.++-.
T Consensus 32 ~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 61 (83)
T 3f27_D 32 LHNAELSKMLGKSWKALTLAEKRPFVEEAE 61 (83)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33445543 667899999999988877654
No 38
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=21.27 E-value=65 Score=21.62 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCC
Q psy11553 21 ANLDVFLRRFNEIQYWVITEILLVT 45 (146)
Q Consensus 21 pni~~~~~~~n~ls~wv~~~IL~~~ 45 (146)
|.+..+++.+|.+..||...|=.-+
T Consensus 17 ~ei~~l~e~~~~vk~WI~l~IPkiE 41 (140)
T 1avo_B 17 PEIKDVIEQLNLVTTWLQLQIPRIE 41 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 7799999999999999998874433
Done!