RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11553
(146 letters)
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 161 bits (410), Expect = 4e-51
Identities = 26/137 (18%), Positives = 60/137 (43%)
Query: 3 SYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAA 62
E + + T + + FN + ++ +EI+ ++ R + K + +A
Sbjct: 26 YEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVAD 85
Query: 63 YCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQA 122
C+ N NA+ + ++ A+ RL TW K+ ++K +L+ L+ + R++
Sbjct: 86 ICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRES 145
Query: 123 VSKLQSPVIPFMPLLLK 139
+ P +P++ + L
Sbjct: 146 LRNCDPPCVPYLGMYLT 162
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 172 bits (436), Expect = 8e-51
Identities = 92/139 (66%), Positives = 120/139 (86%)
Query: 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 60
+ EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+
Sbjct: 779 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKI 838
Query: 61 AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 120
AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR
Sbjct: 839 AAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR 898
Query: 121 QAVSKLQSPVIPFMPLLLK 139
+KL+ P+IPFMPLL+K
Sbjct: 899 LTAAKLEPPLIPFMPLLIK 917
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 169 bits (429), Expect = 2e-50
Identities = 92/139 (66%), Positives = 120/139 (86%)
Query: 1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 60
+ EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+
Sbjct: 474 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKI 533
Query: 61 AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 120
AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR
Sbjct: 534 AAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR 593
Query: 121 QAVSKLQSPVIPFMPLLLK 139
+KL+ P+IPFMPLL+K
Sbjct: 594 LTAAKLEPPLIPFMPLLIK 612
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 159 bits (405), Expect = 6e-50
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 3 SYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAA 62
EL + + N+ F RRFN++ +WV+ EIL +L R +IL +K+A
Sbjct: 53 PEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAK 112
Query: 63 YCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQA 122
E N+++L +V+ L + + RL+ TW L K K T+ +L+ L+ N++ R+
Sbjct: 113 KLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREY 172
Query: 123 VSKLQS-PVIPFMPLLLK 139
+ L+ P IP++ + L
Sbjct: 173 IRSLKMVPSIPYLGIYLL 190
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 151 bits (382), Expect = 2e-43
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 2 SSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLA 61
ELV + + + NL +R + W I+ +L +RV ++ ++I++
Sbjct: 800 QPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEIL 859
Query: 62 AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQ 121
+E N N + V+ +++ V RL T++++PS+ KK E L +++ Y
Sbjct: 860 QVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLA 917
Query: 122 AVSKLQSPVIPFMPLLLK 139
+ + P +PF + L
Sbjct: 918 KLRSINPPCVPFFGIYLT 935
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 147 bits (371), Expect = 5e-43
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 2 SSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLA 61
ELV + + + NL +R + W I+ +L +RV ++ ++I++
Sbjct: 241 QPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEIL 300
Query: 62 AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQ 121
+E N N + V+ +++ V RL T++++PS+ KK E L +++ Y
Sbjct: 301 QVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLA 358
Query: 122 AVSKLQSPVIPFMPLLLK 139
+ + P +PF + L
Sbjct: 359 KLRSINPPCVPFFGIYLT 376
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 118 bits (296), Expect = 4e-33
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 26 FLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKE-YRNINALFAVLMGLSNV 83
+ R N + + +IL T +L R L K+I++A K+ ++ + A++ L
Sbjct: 98 IIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMP 157
Query: 84 AVSRLSLTWDKLPSKSKKTYTELEALIDPSKN--HRAYRQAVSKLQSPVIPFMPLLL 138
++RL TW L + +T E + P H + +P + L+
Sbjct: 158 QITRLEKTWTALRHQYTQTAILYEKQLKPFSKLLHEGRESTCVPPNNVSVPLLMPLV 214
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 114 bits (286), Expect = 8e-32
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
Query: 2 SSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKL 60
EL+ GR L RF+ + + +IL T S +R +L K I+L
Sbjct: 82 WGMELLTLPHGRQLRLD-------LLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQL 134
Query: 61 AAYCKE-YRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAY 119
AA + N+ + AV+ L +SRL TW L + + E + P
Sbjct: 135 AAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKSLNE 194
Query: 120 RQAVSKLQSPVIPFMPLLLK 139
+ L + P + L+
Sbjct: 195 GKEGPPLSNTTFPHVLPLIT 214
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.027
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 120 RQAVSKLQSPVIPFMP-----LLLKG 140
+QA+ KLQ+ + + L +K
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.029
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 47/143 (32%)
Query: 13 RHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLN-KRVQ-ILRKMIKLAAYCKEYRNI 70
+++++ I L VF F V + + K VQ + + ++ +E +I
Sbjct: 15 QYQYKDI---LSVFEDAF-------------VDNFDCKDVQDMPKSILS----KEEIDHI 54
Query: 71 NALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL--EAL---------------IDPS 113
+ + AVS + L SK ++ + E L PS
Sbjct: 55 -------IMSKD-AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 114 KNHRAYRQAVSKLQSPVIPFMPL 136
R Y + +L + F
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKY 129
Score = 29.4 bits (65), Expect = 0.44
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 38/130 (29%)
Query: 19 ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQI--LRKMIKLAAYC---KEYRNINAL 73
I ++ L + W K V L +I+ + EYR +
Sbjct: 333 IAESIRDGLATW---DNW------------KHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 74 FAVLMGLSNVAVSRLSLTW------------DKLPSKS------KKTYTELEALIDPSKN 115
+V +++ LSL W +KL S K++ + ++ K
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 116 HRAYRQAVSK 125
A+ +
Sbjct: 438 KLENEYALHR 447
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 29.4 bits (67), Expect = 0.36
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 33 IQYWV-------ITEILLVTSLNKR 50
IQY V ITEI+LVT +K
Sbjct: 42 IQYVVNECIAAGITEIVLVTHSSKN 66
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 29.4 bits (67), Expect = 0.43
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 33 IQYWV-------ITEILLVTSLNKR 50
IQY V I +++ VT K
Sbjct: 48 IQYAVDEAVEAGIEQMIFVTGRGKS 72
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 29.1 bits (66), Expect = 0.49
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 7/25 (28%)
Query: 33 IQYWV-------ITEILLVTSLNKR 50
I+ T + ++T+ NK
Sbjct: 46 IELIAAEAAELGATRLAIITAPNKA 70
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 29.0 bits (66), Expect = 0.50
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 33 IQYWV-------ITEILLVTSLNKR 50
IQY V + +VT NKR
Sbjct: 36 IQYAVEEAMEAGCEVMAIVTGRNKR 60
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma;
beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Length = 167
Score = 26.6 bits (58), Expect = 3.1
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 42 LLVTSLNKRVQILRKMIKLAAYCKEYRNIN 71
+L+++ N+ + KL+ +C+E R++N
Sbjct: 128 ILISNPNEDAWKDPALEKLSLFCEESRSVN 157
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family
M20/M25/M structural genomics, joint center for
structural genomics; 2.04A {Bacillus cereus atcc 10987}
Length = 373
Score = 26.5 bits (59), Expect = 4.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 40 EILLVTSLNKRVQILRKMIKLAA 62
E + V L K +++ +I+ A
Sbjct: 350 EKIPVEELAKTAELVVAIIEEVA 372
>2a2f_X Exocyst complex component SEC15; all helical structure, protein
transport; 2.50A {Drosophila melanogaster}
Length = 325
Score = 25.8 bits (56), Expect = 6.6
Identities = 8/69 (11%), Positives = 21/69 (30%)
Query: 15 RFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALF 74
+ QI + + + +V S+++ + + + A + I +
Sbjct: 138 QLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSVSQTPSAMFHVARQDAEKQVGLRICSKI 197
Query: 75 AVLMGLSNV 83
LS
Sbjct: 198 DEFFELSAY 206
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote
apolipoprotein B, APOB; HET: PLD UPL; 1.90A
{Ichthyomyzon unicuspis} SCOP: f.7.1.1
Length = 319
Score = 25.6 bits (55), Expect = 7.6
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 58 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDP 112
I C++YR + + A R+ + W +LPS ++ L P
Sbjct: 118 IGWGKNCQQYRAMLEASTGNLQSHPAA--RVDIKWGRLPSSLQRAKNALLENGAP 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.134 0.393
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,185,416
Number of extensions: 116720
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 23
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)