RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11553
         (146 letters)



>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score =  120 bits (301), Expect = 2e-33
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 1   MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 60
           +   ELV     +   +  + NL   +R    +  W    I+   +L +RV ++ ++I++
Sbjct: 234 VQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEI 293

Query: 61  AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 120
               +E  N N +  V+  +++  V RL  T++++PS+ KK   E   L     +++ Y 
Sbjct: 294 LQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYL 351

Query: 121 QAVSKLQSPVIPFMPLLLK 139
             +  +  P +PF  + L 
Sbjct: 352 AKLRSINPPCVPFFGIYLT 370


>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
          {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 45 TSLNKRVQILRKMIK-LAAYCKEYRNINAL---FAVLMGLSNVAVSRLSLTWDKL 95
           +  ++ + ++K+ + L    KE    N +    A   G+    V RL+L   ++
Sbjct: 20 ATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRI 74


>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3,
           Nqo3 {Thermus thermophilus [TaxId: 274]}
          Length = 439

 Score = 26.2 bits (56), Expect = 2.2
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 44  VTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL----SNVAVSRLSLTWDKLPSKS 99
           + +L  RV  L          +    + AL A  +G+         ++ +L   K+P   
Sbjct: 368 LVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKARKVPEAM 427

Query: 100 KKTYTELEAL 109
            +    L+ L
Sbjct: 428 GRLSFRLKEL 437


>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
           shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
           30308]}
          Length = 174

 Score = 25.1 bits (55), Expect = 2.8
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 58  IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL 106
           I     C++YR +       +  S+ A  R+ + W +LPS  ++    L
Sbjct: 68  IGWGKNCQQYRAMLEASTGNLQ-SHPAA-RVDIKWGRLPSSLQRAKNAL 114


>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
           1 (Tip47), C-terminal domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 226

 Score = 24.1 bits (52), Expect = 8.7
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 116 HRAYRQAVSKLQS 128
           + AY  ++ KLQ+
Sbjct: 47  NHAYEHSLGKLQN 59


>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog
          B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 22.7 bits (49), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 16 FQQITANLDVFLRRFNE 32
           QQI+ + + F++  NE
Sbjct: 40 LQQISQHQEHFIQMLNE 56


>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga
           maritima [TaxId: 2336]}
          Length = 308

 Score = 23.9 bits (51), Expect = 9.5
 Identities = 13/86 (15%), Positives = 32/86 (37%)

Query: 50  RVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEAL 109
             ++     K+A + KE  ++       +   +++  +  L  +K+    +K+  +    
Sbjct: 128 LGKVTEITKKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPF 187

Query: 110 IDPSKNHRAYRQAVSKLQSPVIPFMP 135
           ID   N    R  V+     +I  + 
Sbjct: 188 IDALLNDNKARFVVNIPNKGIIHGID 213


>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 121

 Score = 23.4 bits (50), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSK 114
           L+NV + R    WD+    +      L+++I P+K
Sbjct: 50  LTNVLLQR----WDQSRFGTDSEEQRLDSIIHPTK 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 527,811
Number of extensions: 21951
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)