BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11555
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 238 SPQPLPNDIKKFLDES-VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG 296
+ +PLP + + F+ S NGV+ FS+GS + + ++ A QIPQ+V+W+++G
Sbjct: 3 AAKPLPKEXEDFVQSSGENGVVVFSLGSXVSNXT--EERANVIASALAQIPQKVLWRFDG 60
Query: 297 ENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKA 356
L W PQ D+L HP + FI+HGG G EA+Y G+P +GIP+F DQ
Sbjct: 61 NKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPD 120
Query: 357 NIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 406
NI + G V + ++ + +L AL+ V+ +PSYK+ K++R+ D
Sbjct: 121 NIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRIQHD 170
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 16/189 (8%)
Query: 228 VIEVAGLHVKSPQPLPND---IKKFLDESVNG-VIYFSMGSIIQGKSFPSDKRKAFLRAF 283
++ V ++ +PQ +D ++LD+ N V+Y S GS++ + P + A +
Sbjct: 242 LLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVV---TPPPHELTALAESL 298
Query: 284 EQIPQRVIWKWEGENMS----GKIDKILLK----SWAPQRDILDHPNVKVFISHGGFLGT 335
E+ IW + G+ G +++ K +WAPQ +IL H +V VF++H G+
Sbjct: 299 EECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSV 358
Query: 336 TEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTLPYDQITEETVLVALRTVLGNPSYK 394
E + GVP+I P FGDQ N + E GV + +T+E++ AL + +
Sbjct: 359 LECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGG 418
Query: 395 KRAEKVARL 403
+K+ +L
Sbjct: 419 IMRQKIVKL 427
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 304 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVE 362
D+ L+ SW PQ +L+HP++ F++H G+ TTE++ +GVP++ P F DQ + R +
Sbjct: 353 DRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
Query: 363 KAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 403
+ G+ + + EE + + G+ KK +K L
Sbjct: 413 EWEIGMEIDTNVKREELAKLINEVIAGDKG-KKMKQKAMEL 452
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 306 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAG 365
+ + W PQ DIL FI+H G T EAL + VP++ +P +Q N + + G
Sbjct: 307 VEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELG 364
Query: 366 FGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKV 400
G +P DQ+T E + A+ V +P +R V
Sbjct: 365 LGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAV 399
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 257 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM----SGKIDKI----LL 308
V+Y S G++ + P + A A E IW + G ++K ++
Sbjct: 273 VVYISFGTVT---TPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMV 329
Query: 309 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFG 367
WAPQ ++L H V F++H G+ E++ GVP+I P FGDQ+ N R+VE G
Sbjct: 330 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Query: 368 VTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQ--DRPMPP 411
V + T+ ++ +L KK E + L + DR + P
Sbjct: 390 VRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGP 435
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 246 IKKFLDESVN-GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM---SG 301
I K+LDE + V++ GS+ G SF + + + R +W E G
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 302 KID------KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQK 355
++ K ++ WAPQ ++L H + F+SH G+ E+++ GVPI+ P++ +Q+
Sbjct: 324 FLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 356 AN-IRVVEKAGFGVTLPYDQITEETVLVA 383
N R+V++ G G+ L D V+ A
Sbjct: 384 LNAFRLVKEWGVGLGLRVDYRKGSDVVAA 412
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 246 IKKFLDESVN-GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM---SG 301
I K+LDE + V++ GS+ G SF + + + R +W E G
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 302 KID------KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQK 355
++ K ++ WAPQ ++L H + F+SH G+ E+++ GVPI+ P++ +Q+
Sbjct: 324 FLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 356 AN-IRVVEKAGFGVTLPYDQITEETVLVA 383
N R+V++ G G+ L D V+ A
Sbjct: 384 LNAFRLVKEWGVGLGLRVDYRKGSDVVAA 412
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 311 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 370
WAPQ +L HP+ F++H G+ T E++ SG+P+I P++ +QK N ++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL--------- 396
Query: 371 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQ 405
E + ALR G+ +R E+VAR+ +
Sbjct: 397 ------SEDIRAALRPRAGDDGLVRR-EEVARVVK 424
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 321 PNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV 380
P V + HGG T L GVP + +P+ + + R++ AG GV +P++Q E+V
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 357
Query: 381 LVALRTVLGNPSYKKRAEKVARLFQDRPMP 410
L A + + SY A ++A P P
Sbjct: 358 LAACARIRDDSSYVGNARRLAAEXATLPTP 387
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 321 PNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV 380
P V + HGG T L GVP + +P+ + + R++ AG GV +P++Q E+V
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 358
Query: 381 LVALRTVLGNPSYKKRAEKVARLFQDRPMP 410
L A + + SY A ++A P P
Sbjct: 359 LAACARIRDDSSYVGNARRLAAEXATLPTP 388
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 245 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLR----AFEQIPQRVIWKWEGENMS 300
D ++FL E + + G +F + R F R AF+ P V+ +
Sbjct: 232 DDRRFLGEWTRPADDLPVVLVSLGTTF--NDRPGFFRDCARAFDGQPWHVV-----XTLG 284
Query: 301 GKIDKILLKS---------WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMF 351
G++D L W P +L+ V V +HGG EALY G P++ +P
Sbjct: 285 GQVDPAALGDLPPNVEAHRWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVPQS 342
Query: 352 GDQKANIRVVEKAGFGVTLPYDQITEETVL 381
D + R V++ G G LP ++ +T+L
Sbjct: 343 FDVQPXARRVDQLGLGAVLPGEKADGDTLL 372
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 245 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLR----AFEQIPQRVIWKWEGENMS 300
D ++FL E + + G +F + R F R AF+ P V+ +
Sbjct: 232 DDRRFLGEWTRPADDLPVVLVSLGTTF--NDRPGFFRDCARAFDGQPWHVV-----XTLG 284
Query: 301 GKIDKILLKS---------WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMF 351
G++D L W P +L+ V V +HGG EALY G P++ +P
Sbjct: 285 GQVDPAALGDLPPNVEAHRWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVPQS 342
Query: 352 GDQKANIRVVEKAGFGVTLPYDQITEETVL 381
D + R V++ G G LP ++ +T+L
Sbjct: 343 FDVQPXARRVDQLGLGAVLPGEKADGDTLL 372
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 304 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK 363
D + + W PQ IL ++ F++H G G+ E L + P+I +P DQ N +++
Sbjct: 283 DNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQG 340
Query: 364 AGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKV 400
G L ++ T + + ++ +P +R ++
Sbjct: 341 LGVARKLATEEATADLLRETALALVDDPEVARRLRRI 377
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 235 HVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKW 294
HV + + P + + ++ V+ S GS + +S+ D+ FLR + + +W
Sbjct: 191 HVATSRQCPLEPWMYTRDTRQRVLVTS-GSRVAKESY--DRNFDFLRGL----AKDLVRW 243
Query: 295 EGENMSGKIDKIL--LKSWAPQRDI----LD--HPNVKVFISHGGFLGTTEALYSGVPII 346
+ E + D + L++ PQ + LD P + + H G + T L +GVP +
Sbjct: 244 DVELIVAAPDTVAEALRAEVPQARVGWTPLDVVAPTCDLLVHHAGGVSTLTGLSAGVPQL 303
Query: 347 GIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 406
IP +A R V G + L + + E + + + + +Y +RA+ ++R
Sbjct: 304 LIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISG 363
Query: 407 RPMP 410
P+P
Sbjct: 364 MPLP 367
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 6/172 (3%)
Query: 243 PNDIKKFL-DESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSG 301
P+ + ++L DE + ++G + S + L A + +I ++ + + G
Sbjct: 254 PSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEG 313
Query: 302 KI---DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANI 358
D + + P +L P + HGG A GVP + +P D
Sbjct: 314 VANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRA 371
Query: 359 RVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMP 410
+ ++ G G+ LP ++T + + +++ VL +P+++ A ++ P P
Sbjct: 372 QRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSP 423
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 306 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAG 365
+ L+SW PQ +L P+V + + HGG T AL +GVP + P GD AN + V +AG
Sbjct: 294 VRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAG 351
Query: 366 FGVTLPYDQITEETVLVALRTVLGNPSYK 394
G L D I+ ++V A + +L SY+
Sbjct: 352 AGDHLLPDNISPDSVSGAAKRLLAEESYR 380
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 10/182 (5%)
Query: 222 RPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLR 281
RP ++ + +PL +++ FL + + +Y GS P++ + +
Sbjct: 189 RPTDLGTVQTGAWILPDQRPLSAELEGFL-RAGSPPVYVGFGS----GPAPAEAARVAIE 243
Query: 282 AFEQIPQRVIWK--WEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEAL 339
A +RV+ W G + D L+ + + V + HGG TT
Sbjct: 244 AVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLFGR--VAAVVHHGGAGTTTAVT 301
Query: 340 YSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEK 399
+G P + +P DQ V G GV T E++ AL T L P + RA
Sbjct: 302 RAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATAL-TPGIRARAAA 360
Query: 400 VA 401
VA
Sbjct: 361 VA 362
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 277 KAFLRAFEQIPQRVIWKWEGENMSGKIDKILL---------KSWAPQRDILDHPNVKVFI 327
+A +AF P V+ + G +D +L W P +L H + +
Sbjct: 250 RACAQAFADTPWHVV-----XAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACL 302
Query: 328 SHGGFLGTTEALYSGVPIIGIPMFGDQKA--NIRVVEKAGFGVTLPYDQITEETVLVALR 385
+HG EA +GVP++ +P F + A RV+E G G L DQ+ ++ A+
Sbjct: 303 THGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIE-LGLGSVLRPDQLEPASIREAVE 361
Query: 386 TVLGN 390
+ +
Sbjct: 362 RLAAD 366
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 217 TFIGSRPYPNNVI---------EVAGLHVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQ 267
TF G R P + I +V + K PQ LP DE VNGV Y+ GS IQ
Sbjct: 162 TFSGHRGDPQDAIAALESLTTEQVTEFNNKYPQALPKTPGGEGDEIVNGVHYYCFGSYIQ 221
Query: 268 G 268
G
Sbjct: 222 G 222
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 65/168 (38%), Gaps = 18/168 (10%)
Query: 240 QPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM 299
+PL ++ FLD V Y GS+ P+D + + A +RVI
Sbjct: 224 RPLSPELAAFLDAGPPPV-YLGFGSL----GAPADAVRVAIDAIRAHGRRVILS------ 272
Query: 300 SGKIDKILLKSWAPQRDI--LDHP----NVKVFISHGGFLGTTEALYSGVPIIGIPMFGD 353
G D +L A I ++H V I HGG T A +G P I +P D
Sbjct: 273 RGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMAD 332
Query: 354 QKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 401
Q V + G GV T +++ AL T L P RA VA
Sbjct: 333 QPYYAGRVAELGVGVAHDGPIPTFDSLSAALATAL-TPETHARATAVA 379
>pdb|3N99|A Chain A, Crystal Structure Of Tm1086
pdb|3N99|B Chain B, Crystal Structure Of Tm1086
pdb|3N99|C Chain C, Crystal Structure Of Tm1086
pdb|3N99|D Chain D, Crystal Structure Of Tm1086
pdb|3N99|E Chain E, Crystal Structure Of Tm1086
pdb|3N99|G Chain G, Crystal Structure Of Tm1086
pdb|3N99|H Chain H, Crystal Structure Of Tm1086
pdb|3N99|I Chain I, Crystal Structure Of Tm1086
pdb|3N99|J Chain J, Crystal Structure Of Tm1086
pdb|3N99|K Chain K, Crystal Structure Of Tm1086
pdb|3N99|L Chain L, Crystal Structure Of Tm1086
pdb|3N99|M Chain M, Crystal Structure Of Tm1086
pdb|3N99|N Chain N, Crystal Structure Of Tm1086
pdb|3N99|O Chain O, Crystal Structure Of Tm1086
pdb|3N99|P Chain P, Crystal Structure Of Tm1086
pdb|3N99|S Chain S, Crystal Structure Of Tm1086
pdb|3N99|T Chain T, Crystal Structure Of Tm1086
pdb|3N99|U Chain U, Crystal Structure Of Tm1086
pdb|3N99|V Chain V, Crystal Structure Of Tm1086
pdb|3N99|X Chain X, Crystal Structure Of Tm1086
pdb|3N99|AA Chain a, Crystal Structure Of Tm1086
pdb|3N99|BB Chain b, Crystal Structure Of Tm1086
pdb|3N99|CC Chain c, Crystal Structure Of Tm1086
pdb|3N99|DD Chain d, Crystal Structure Of Tm1086
pdb|3N99|EE Chain e, Crystal Structure Of Tm1086
pdb|3N99|GG Chain g, Crystal Structure Of Tm1086
pdb|3N99|HH Chain h, Crystal Structure Of Tm1086
pdb|3N99|II Chain i, Crystal Structure Of Tm1086
pdb|3N99|JJ Chain j, Crystal Structure Of Tm1086
pdb|3N99|KK Chain k, Crystal Structure Of Tm1086
Length = 290
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 297 ENMSGKI---DKILLKSWAPQRDILDHPNVKVF 326
E + GK+ DKIL+K+W +LDHP+VKV
Sbjct: 126 EEVLGKLMVGDKILIKAWGQGLKLLDHPDVKVM 158
>pdb|3DCL|A Chain A, Crystal Structure Of Tm1086
pdb|3DCL|B Chain B, Crystal Structure Of Tm1086
pdb|3DCL|C Chain C, Crystal Structure Of Tm1086
pdb|3DCL|D Chain D, Crystal Structure Of Tm1086
pdb|3DCL|E Chain E, Crystal Structure Of Tm1086
Length = 284
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 297 ENMSGKI---DKILLKSWAPQRDILDHPNVKV 325
E + GK+ DKIL+K+W +LDHP+VKV
Sbjct: 120 EEVLGKLXVGDKILIKAWGQGLKLLDHPDVKV 151
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 322 NVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVL 381
V I HG A +GVP + IP DQ V G GV T E++
Sbjct: 302 RVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLS 361
Query: 382 VALRTVLGNPSYKKRAEKVARL 403
AL TVL P + RAE VA +
Sbjct: 362 AALTTVLA-PETRARAEAVAGM 382
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 311 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 370
W P +L+ I HGG AL +GVP IP Q N V+ G G
Sbjct: 295 WIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA 352
Query: 371 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWI 419
+ E R +L + ++ A +V + + P PP +TA +
Sbjct: 353 EAGSLGAEQC----RRLLDDAGLREAALRVRQEMSEMP-PPAETAAXLV 396
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 311 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 370
W P +L+ I HGG AL +GVP IP Q N V+ G G
Sbjct: 295 WIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA 352
Query: 371 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWI 419
+ E R +L + ++ A +V + + P PP +TA +
Sbjct: 353 EAGSLGAEQC----RRLLDDAGLREAALRVRQEMSEMP-PPAETAAKLV 396
>pdb|1V29|B Chain B, Crystal Structure Of Nitrile Hydratase From A Thermophile
Bacillus Smithii
Length = 229
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 281 RAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKV 325
+AF + P I +WE + ++K LL+ +P R++ P +V
Sbjct: 100 QAFMEKPDTKIQRWENPKLVKVVEKALLEGLSPVREVSSFPRFEV 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,966,249
Number of Sequences: 62578
Number of extensions: 628814
Number of successful extensions: 1396
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 33
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)