RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11555
(484 letters)
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 234 bits (600), Expect = 2e-71
Identities = 126/393 (32%), Positives = 204/393 (51%), Gaps = 20/393 (5%)
Query: 76 EDTCEAVMSTKAALDLLHSSKKYDLIITEVFNTDCFLGFVYKFKVPYIAVSAAHIIPTAA 135
+C+ ++ K + L S +D+++ + C +P + S + AA
Sbjct: 99 RVSCKELVGNKFLMTKLQESS-FDVVLADPVWP-CGALLAELLHIPTVY-SLRFVPGYAA 155
Query: 136 ERF--GIPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLSINLMRKYYYDPKHHKVATKY- 192
E+ G+P PSY+P M F +R+ N + I L +++ K
Sbjct: 156 EKADGGLPAPPSYVPVRLSDLSDGMTFGERVKNML----IMLYFDFWFQRFPKKWDQFAS 211
Query: 193 ----FGEDLPPLDQLARNTSLVLVNSHFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKK 248
LP L A S L+ +++ RP N+ + GL+ K +PLP +++
Sbjct: 212 ELLGRPVTLPELMSKA---SAWLLRNYWDLEFPRPLLPNMEFIGGLNCKPAKPLPQEMEA 268
Query: 249 FLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKIL 307
F+ S +GV+ FS+GS++ + P +K A QIPQ+V+W+++G S
Sbjct: 269 FVQSSGEHGVVVFSLGSMV--SNIPEEKANEIASALAQIPQKVLWRFDGTKPSTLGRNTR 326
Query: 308 LKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFG 367
L W PQ D+L HP + F++H G G EA+ GVP++G+P+FGDQ N + +E G
Sbjct: 327 LVKWLPQNDLLGHPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAA 386
Query: 368 VTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGG 427
VTL +T E +L AL+TV+ +PSYK+ +++ + D+P+ PLD A++WIE V+RH G
Sbjct: 387 VTLNVLTMTSEDLLNALKTVINDPSYKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKG 446
Query: 428 GAHLRPASLELYWWQYILLDVIIALILLIAAMV 460
HLRPA+ +L W+QY LDVI L+ +A +
Sbjct: 447 AKHLRPAAHDLTWYQYHSLDVIGFLLACVATVA 479
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 224 bits (573), Expect = 2e-67
Identities = 118/372 (31%), Positives = 197/372 (52%), Gaps = 14/372 (3%)
Query: 97 KYDLIITEVFNTDCFLGFVYKF-KVPYIAVSAAHIIPTAAERF----GIPDNPSYIPNAF 151
K+DL++TE F D L F + F P I +S+ + + AE F + +P Y PN +
Sbjct: 136 KFDLLVTEAF-LDYPLVFSHLFGDAPVIQISSGYGL---AENFETMGAVSRHPVYYPNLW 191
Query: 152 LSYDSDMNFVQRMFNSITTLSINLMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVL 211
S ++N + + T L + D + +K+ + FG D P + +L L+
Sbjct: 192 RSKFGNLNVWETINEIYTELRLYNEFSLLAD-EQNKLLKQQFGPDTPTIRELRNRVQLLF 250
Query: 212 VNSHFTFIGSRPYPNNVIEVAGLH--VKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGK 269
VN H F +RP P +V + GLH K PQPL + +++FL+ S NGV+Y S GS I
Sbjct: 251 VNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTN 310
Query: 270 SFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI-DKILLKSWAPQRDILDHPNVKVFIS 328
++ + LR F+++P V+WK++GE + + +L + W PQR +L H NVK F++
Sbjct: 311 DMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVT 370
Query: 329 HGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVL 388
GG T EA+ + VP++G+PM GDQ N + G G L ++ +++A+ V+
Sbjct: 371 QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVI 430
Query: 389 GNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGA-HLRPASLELYWWQYILLD 447
NP Y+K +++ L + +PM PL AI++ EHVIR+ G L+ + + + Y +
Sbjct: 431 ENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYSDYFMSY 490
Query: 448 VIIALILLIAAM 459
+++ L+
Sbjct: 491 ILVPLVTFTVMN 502
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 109 bits (274), Expect = 4e-26
Identities = 69/320 (21%), Positives = 105/320 (32%), Gaps = 51/320 (15%)
Query: 97 KYDLIITEVFNTDCFLGFVYKFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSYDS 156
DL++ + A + A AAE GIP + L D+
Sbjct: 104 GPDLVVADPL-----------------AFAGAV----AAEALGIP----AVR-LLLGPDT 137
Query: 157 ----DMNFVQRMFNSITTLSINLMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVLV 212
+ R + L + + + L LD
Sbjct: 138 PTSAFPPPLGRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS 197
Query: 213 NSHFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNG--VIYFSMGSIIQGKS 270
+ P + V V P P ++ FL G +Y GS+
Sbjct: 198 PAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAA---GRPPVYVGFGSM----- 249
Query: 271 FPSDKRKAFLRAFEQI----PQRVIWK--WEGENMSGKIDKILLKSWAPQRDILDHPNVK 324
+A R + QR I W G D + + + P +L P
Sbjct: 250 -VVRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLL--PRCA 306
Query: 325 VFISHGGFLGTT-EALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVA 383
+ HGG GTT AL +GVP + +P FGDQ V + G G L ++T E + A
Sbjct: 307 AVVHHGGA-GTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAA 365
Query: 384 LRTVLGNPSYKKRAEKVARL 403
LR +L PS ++ A + R+
Sbjct: 366 LRRLLDPPSRRRAAALLRRI 385
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 99.4 bits (248), Expect = 1e-22
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 256 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI--DKILLKSWAP 313
++Y S+G++ L A + RVI G + D +++ + P
Sbjct: 238 PIVYVSLGTVGNAVEL----LAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVP 293
Query: 314 QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 373
Q ++L P I HGG T+EALY+GVP++ IP DQ N VE+ G G+ LP++
Sbjct: 294 QLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFE 351
Query: 374 QITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGG 428
++TEE + A+ VL + SY++ AE++A F + A +E R
Sbjct: 352 ELTEERLRAAVNEVLADDSYRRAAERLAEEF--KEEDGPAKAADLLEEFAREKKK 404
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 86.3 bits (214), Expect = 3e-18
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 191 KYFGEDLPPLDQLARN---TSLVL-----------VNSHFTFIGSRPYPNNVIEVAGLHV 236
+ G PP++ LA +LV + FTF+G +
Sbjct: 163 EEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGP-CIGDRK------ED 215
Query: 237 KSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG 296
S + P D + V+ S+G++ + PS R + AF + V+
Sbjct: 216 GSWER-PGDGRP--------VVLISLGTVFN--NQPSFYR-TCVEAFRDLDWHVVL---- 259
Query: 297 ENMSGK-ID---------KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPII 346
G+ +D + ++ W PQ +IL + FI+HGG T EAL++GVP++
Sbjct: 260 --SVGRGVDPADLGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMV 315
Query: 347 GIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLF 404
+P DQ R + + G G LP +++T E + A+ VL +P Y +R K+
Sbjct: 316 AVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEI 373
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 64.4 bits (157), Expect = 5e-11
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 246 IKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGK-- 302
I ++LD+ + V++ GS+ S P+ + K +A E + R +W N +
Sbjct: 270 IMRWLDDQPESSVVFLCFGSL---GSLPAPQIKEIAQALELVGCRFLWSIR-TNPAEYAS 325
Query: 303 -------------IDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIP 349
+ + L+ WAPQ +IL H + F+SH G+ E+L+ GVPI P
Sbjct: 326 PYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385
Query: 350 MFGDQKAN-IRVVEKAGFGVTLPYDQITEETVLV-------ALRTVL--GNPSYKKRAEK 399
M+ +Q+ N +V++ G V L D ++ +V A+R+++ + KK E
Sbjct: 386 MYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEI 445
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 63.9 bits (155), Expect = 7e-11
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 41/233 (17%)
Query: 210 VLVNSHFT--------FIGSRPYPNNVIEVAGLHVKSPQPLP-------NDIKKFLDESV 254
+LVNS F F+ + YP+ V V + QP P +++ K+LD+
Sbjct: 215 ILVNSSFDIEPYSVNHFLDEQNYPS-VYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQP 273
Query: 255 NG-VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMS-------GKIDKI 306
V++ GS+ K E R +W E ++ G +D++
Sbjct: 274 EASVVFLCFGSM---GRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRV 330
Query: 307 ----LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN-IRVV 361
++ W+PQ +IL H V F+SH G+ E+L+ GVPI+ PM+ +Q+ N +V
Sbjct: 331 SGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMV 390
Query: 362 EKAGFGVTLPYDQ-------ITEETVLVALRTVLG--NPSYKKRAEKVARLFQ 405
++ V L D + + A+R V+ N +KR ++++ Q
Sbjct: 391 KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQ 443
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 63.1 bits (153), Expect = 1e-10
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 252 ESVNGVIYFSMGS--------IIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI 303
+ N VI+ S+GS +++ S + FL P V E++ +
Sbjct: 261 QKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIR--PGSVRGSEWIESLPKEF 318
Query: 304 DKILLK-----SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANI 358
KI+ WAPQ+++L HP V F SH G+ T E++ GVP+I P DQK N
Sbjct: 319 SKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNA 378
Query: 359 RVVE 362
R +E
Sbjct: 379 RYLE 382
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 60.1 bits (146), Expect = 1e-09
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 310 SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN 357
+WAPQ++IL H V F++H G+ E+L+ GVP+ P++ +Q N
Sbjct: 345 TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 59.7 bits (144), Expect = 1e-09
Identities = 79/326 (24%), Positives = 134/326 (41%), Gaps = 65/326 (19%)
Query: 131 IPTAAERFGIPD-----NPSYIPNAFLSYDSDMNFVQRMFNSITTLSINLMRKYYYDPKH 185
P A RF +P P+++ + + +Y + N V N + +L I + +
Sbjct: 119 APKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEFPN-LPSLEIRDLPSFLSPSNT 177
Query: 186 HKVATKYFGEDLPPLDQLARNTSLVLVNSHFTFIGSRP-----YPNNVIEVAGLHVKSPQ 240
+K A + E + L + + +LVN TF P PN IE+ + P
Sbjct: 178 NKAAQAVYQELMEFLKE--ESNPKILVN---TFDSLEPEFLTAIPN--IEMVAVGPLLPA 230
Query: 241 PLPNDIKKFLDESV----------------NGVIYFSMGSIIQGKSFPSDKRKAFLRAFE 284
+ + D SV + VIY S G++++ + + RA
Sbjct: 231 EIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVE---LSKKQIEELARALI 287
Query: 285 QIPQRVIW----------KWEGENMSGKIDKI-----------LLKSWAPQRDILDHPNV 323
+ + +W K EGE + +I+KI ++ SW Q ++L H V
Sbjct: 288 EGKRPFLWVITDKLNREAKIEGEEET-EIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAV 346
Query: 324 KVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE---KAGFGVTLPYDQITEE-T 379
F++H G+ + E+L GVP++ PM+ DQ AN +++E K G V + + E
Sbjct: 347 GCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGE 406
Query: 380 VLVALRTVLGNPSYKKR--AEKVARL 403
+ L V+ S + R AEK RL
Sbjct: 407 IRRCLEAVMEEKSVELRESAEKWKRL 432
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 59.1 bits (143), Expect = 2e-09
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 248 KFLD-ESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW------------KW 294
K+LD + + VIY S GS SF +++ E Q IW +W
Sbjct: 277 KWLDSKKPDSVIYLSFGS---VASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEW 333
Query: 295 --EG--ENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPM 350
EG E GK ++++ WAPQ ILDH F++H G+ E + +G+P++ P+
Sbjct: 334 LPEGFEERTKGK--GLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPV 391
Query: 351 FGDQKANIRVVEK---------AGFGVTLPYDQITEETVLVALRTVLGNPSY---KKRAE 398
+Q N ++V + A V + D I+ E V A+R V+ + RA+
Sbjct: 392 GAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAK 451
Query: 399 KVARL 403
K+A +
Sbjct: 452 KLAEM 456
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 58.3 bits (141), Expect = 4e-09
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 306 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKA 364
+L+K WAPQ IL HP + F++H G+ T E + SGVP+I P+F +Q N + +VE
Sbjct: 346 LLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVL 405
Query: 365 GFGVTL 370
GV +
Sbjct: 406 RIGVRV 411
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 57.5 bits (139), Expect = 7e-09
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 304 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN 357
DK + W PQ +L HP+V F++H G+ T EAL SGVP++ P +GDQ +
Sbjct: 337 DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTD 390
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 57.3 bits (139), Expect = 8e-09
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 245 DIKKFLDES-VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI 303
D ++LD V+Y S+GS + S D+ A LR R +W GE K
Sbjct: 263 DYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGV---RFLWVARGEASRLKE 319
Query: 304 ---DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR- 359
D L+ W Q +L H +V F +H G+ T EA+++GVP++ P+F DQ N +
Sbjct: 320 ICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKL 379
Query: 360 VVE--KAGFGVTLPYDQITEETVLV 382
+VE K G+ V ++ EET++
Sbjct: 380 IVEDWKIGWRVK---REVGEETLVG 401
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 56.1 bits (135), Expect = 2e-08
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 307 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV-EKAG 365
++ SWAPQ +IL H V F++H G+ T E++ GVP+I P+F +Q N ++ ++ G
Sbjct: 341 VVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELG 400
Query: 366 FGVTL--PYDQITEETVLVALRTVLGNPSYKKRAEKVARL 403
V P + I+ + +R V+ ++ KV +L
Sbjct: 401 IAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKL 440
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 55.6 bits (134), Expect = 3e-08
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 310 SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN-IRVVEKAGFGV 368
WAPQ +L P + F++H G+ E+L+ GVP+ P++ +QK N +VE+ G V
Sbjct: 348 GWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAV 407
Query: 369 ----TLPYDQITEETVLV 382
D + E V
Sbjct: 408 EIRKYWRGDLLAGEMETV 425
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 55.0 bits (132), Expect = 4e-08
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 248 KFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----KWEGENMSG- 301
++LD+ + V+Y S GS+++ ++ + +A + +W K + +N+
Sbjct: 261 EWLDKQARSSVVYISFGSMLESLE---NQVETIAKALKNRGVPFLWVIRPKEKAQNVQVL 317
Query: 302 ----KIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN 357
K + ++ W+PQ IL H + F++H G+ T E + +GVP++ P + DQ +
Sbjct: 318 QEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPID 377
Query: 358 IR-VVEKAGFGVTLPYDQITEE 378
R +V+ G GV + D + E
Sbjct: 378 ARLLVDVFGIGVRMRNDAVDGE 399
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 53.5 bits (128), Expect = 1e-07
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 224 YPNNVIEVAGLHVKSPQPLPNDIKKFLDES-VNGVIYFSMGSIIQGKSFPSDKRKAFLRA 282
YP I +HV+ N I ++LD+ V+Y +GS G + ++
Sbjct: 239 YPIGPIVRTNVHVEKR----NSIFEWLDKQGERSVVYVCLGS---GGTLTFEQTVELAWG 291
Query: 283 FEQIPQRVIW------KWEGENMS-----------GKIDK-----ILLKSWAPQRDILDH 320
E QR +W + G + S G +D+ +++ WAPQ +IL H
Sbjct: 292 LELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSH 351
Query: 321 PNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV 380
++ F+SH G+ E+L GVPI+ P++ +Q N ++ + GV + ++ E V
Sbjct: 352 RSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE-IGVAVRTSELPSEKV 410
Query: 381 L 381
+
Sbjct: 411 I 411
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 52.6 bits (126), Expect = 3e-07
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 245 DIKKFLD-ESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI 303
IK++LD + VN V+Y ++G+ S ++ E+ W E + +
Sbjct: 267 RIKEWLDKQRVNSVVYVALGT---EASLRREEVTELALGLEKSETPFFWVLRNEPGTTQN 323
Query: 304 DKILLKS---------------WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGI 348
+L W PQ IL H +V F++H G+ E L G +I
Sbjct: 324 ALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILF 383
Query: 349 PMFGDQKANIRVVEKAGFGVTLPYDQ----ITEETVLVALRTVL---GNPSYKKRAEKVA 401
P+ +Q N R++ G+ +P D+ T ++V ++R + + +A+++
Sbjct: 384 PVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMR 443
Query: 402 RLFQDR 407
LF D
Sbjct: 444 NLFGDM 449
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 51.6 bits (123), Expect = 5e-07
Identities = 21/66 (31%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 306 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN-IRVVEKA 364
+++KSWAPQ +L+H V F++H G+ EA+ +GVP++ P++ +Q+ N + +V++
Sbjct: 336 MVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEI 395
Query: 365 GFGVTL 370
+++
Sbjct: 396 KIAISM 401
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 51.8 bits (124), Expect = 5e-07
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 220 GSRPYPNNVIEVAGLH------VKSPQPLPNDIK--KFLDE-SVNGVIYFSMGSIIQGKS 270
G P ++++ LH + P D+ +L E N VIY S GS +
Sbjct: 232 GQNP---QILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVS--P 286
Query: 271 FPSDKRKAFLRAFEQIPQRVIW----KWEGENMSGKIDKIL----LKSWAPQRDILDHPN 322
+ A E + IW W G ++++ + SWAPQ ++L H
Sbjct: 287 IGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQA 346
Query: 323 VKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAGFGVTLPYDQITEETVL 381
V +++H G+ T EA+ ++ P+ GDQ N +V+ GV + ++ V
Sbjct: 347 VGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRI--SGFGQKEVE 404
Query: 382 VALRTVLGNPSYKKRAEKVARLFQDRPM 409
LR V+ + +R K+ ++R M
Sbjct: 405 EGLRKVMEDSGMGERLMKL----RERAM 428
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 49.6 bits (118), Expect = 2e-06
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 304 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN---IRV 360
DK L+ W+PQ +L + + F++H G+ T E L GVP++ +P + DQ N I+
Sbjct: 317 DKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376
Query: 361 VEKAGFGV 368
V K G V
Sbjct: 377 VWKVGVRV 384
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 49.9 bits (119), Expect = 2e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 306 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV 361
++++ WAPQ IL H V F++H G+ E L +GVP++ PM DQ N ++
Sbjct: 345 LVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 46.2 bits (109), Expect = 3e-05
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 311 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV 361
W Q IL HP+V F+SH GF E+L S I+ +P GDQ N R++
Sbjct: 324 WVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLL 374
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 43.9 bits (104), Expect = 1e-04
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 327 ISHGGFLGTTEALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLPYDQITEETVLV 382
IS G L E L GVP I +P G Q+ N + +EKAG + + ++T E +
Sbjct: 257 ISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316
Query: 383 ALRTVLGNPS-YKKRAEKVARLFQ 405
+ +L NP K AE +L +
Sbjct: 317 LILRLLSNPEKLKAMAENAKKLGK 340
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 41.5 bits (97), Expect = 7e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 306 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV 361
I+ + W Q IL HP+V F++H GF E+L S I+ IP DQ R++
Sbjct: 314 IVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLL 369
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 39.9 bits (94), Expect = 0.002
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 327 ISHGGFLGTTEALYSGVPIIGIPM---FGDQKANIRVVEKAGFGVTLPYDQITEETVLVA 383
IS G E +GVP I IP DQ N + +E G G+ + ++ E +L A
Sbjct: 255 ISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEA 314
Query: 384 LRTVLGNP----SYKKRAEKVAR 402
L +L +P + + A K+A+
Sbjct: 315 LLKLLLDPANLEAMAEAARKLAK 337
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 38.8 bits (91), Expect = 0.004
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 326 FISHGGFLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPYDQITEETV 380
I + GF +EALY G P++ +P+ G +Q +N +E+ G+G+ + + + +
Sbjct: 253 VICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 39.0 bits (92), Expect = 0.004
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 337 EALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 392
E G+P I IP Q AN R + KAG V +P +++T E + AL +L +P
Sbjct: 267 ELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPE 326
Query: 393 Y----KKRAEKVAR 402
+ A +AR
Sbjct: 327 RLKAMAEAARSLAR 340
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 38.3 bits (89), Expect = 0.006
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 322 NVKVFISHGGFLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPY 372
N ++ I+HGGF +EAL G P+I IP G +Q N +E G G+ L Y
Sbjct: 247 NAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 36.9 bits (85), Expect = 0.023
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 311 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV-EKAGFGVT 369
W Q ILDHP++ F++H G E+L S ++ IP DQ R++ E+ V
Sbjct: 318 WVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVE 377
Query: 370 LPYDQ---ITEETVLVALRTVLGNPS 392
+ ++ ++E++ A+++V+ S
Sbjct: 378 VSREKTGWFSKESLSNAIKSVMDKDS 403
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 35.5 bits (83), Expect = 0.048
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 342 GVPIIGIPMF-----GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS-YKK 395
G+P I +P Q AN R + AG + +P +T E + L +L +P +
Sbjct: 272 GLPAILVP-LPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEA 330
Query: 396 RAEKVARL 403
AE L
Sbjct: 331 MAEAARAL 338
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 34.6 bits (80), Expect = 0.053
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 327 ISHGGFLGTTEALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLPYDQITEETVLV 382
IS G E L G P I +P Q N + KAG + L ++T E ++
Sbjct: 77 ISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKLVE 136
Query: 383 ALRTVLGNPSY 393
AL +L P
Sbjct: 137 ALLKLLLKPLR 147
>gnl|CDD|203546 pfam06917, Pectate_lyase_2, Periplasmic pectate lyase. This family
consists of several Enterobacterial periplasmic pectate
lyase proteins (EC:4.2.2.2). A major virulence
determinant of the plant-pathogenic enterobacterium
Erwinia chrysanthemi is the production of pectate lyase
enzymes that degrade plant cell walls.
Length = 533
Score = 31.7 bits (72), Expect = 0.95
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 380 VLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEH 421
VLV L + G+ Y++RAE + R F D + +YW H
Sbjct: 63 VLVGLSVLTGDAKYQQRAECIVRYFFDNYQDE-NGLLYWGGH 103
>gnl|CDD|226046 COG3515, COG3515, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 346
Score = 30.9 bits (70), Expect = 1.5
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 370 LPYDQITEETVLVALRTVLGNPSYKKRAE-KVARLFQDRPMPPLDTAIYWIEHVIRHGGG 428
L Q+ + + R E + AR + + L + E V+ G
Sbjct: 161 LLLRQLELKLSAELAALLAALQQTAARLETQAARDIKAAALTALRAGLLAAEQVLSRLPG 220
Query: 429 AHLRPASLELYWWQYILLDVIIALILLIAA 458
+ +L + A L+ A
Sbjct: 221 DAAPR--DRFLRQRLLLAQLPAAAGLIALA 248
>gnl|CDD|241408 cd13254, PH2_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH
domain Pleckstrin homology (PH) domain, repeat 2. ARAP
proteins (also called centaurin delta) are
phosphatidylinositol 3,4,5-trisphosphate-dependent
GTPase-activating proteins that modulate actin
cytoskeleton remodeling by regulating ARF and RHO family
members. They bind phosphatidylinositol
3,4,5-trisphosphate (PtdIns(3,4,5)P3) and
phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2)
binding. There are 3 mammalian ARAP proteins: ARAP1,
ARAP2, and ARAP3. All ARAP proteins contain a N-terminal
SAM (sterile alpha motif) domain, 5 PH domains, an
ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a
Ras-associating domain. This hierarchy contains the
second PH domain in ARAP. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 90
Score = 28.8 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 318 LDHPNVKVFISHGG---FLGTTEALYS-GVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 372
L KV+ + G +L E + G+ I I M AN++ V+K F +T PY
Sbjct: 14 LRGHKSKVYTALSGDKVWLYKNEQEFRLGIGITVIDMNV---ANVKDVDKRSFDLTTPY 69
>gnl|CDD|226742 COG4292, COG4292, Predicted membrane protein [Function unknown].
Length = 387
Score = 30.1 bits (68), Expect = 2.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 416 IYWI--EHVIRHGGGAHLRPASLELYWWQYILLDVIIALILLIAAMVWSI 463
+Y+ + H +H RP +L Y L ++I +I+L A + +S+
Sbjct: 248 LYFHIGQERASHKLESHGRPQTLAQLLLTYGHLPIVIGIIVLAAGLDFSL 297
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 29.8 bits (67), Expect = 3.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 432 RPASLELYW--WQY-ILLDVIIALILLIAAMVWSIQWLVR 468
RP L L W QY + L V ++I+ + A V + WLVR
Sbjct: 24 RPGELSLIWQGQQYEMSLMVAASIIVALVAAVLLLWWLVR 63
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 30.0 bits (67), Expect = 3.6
Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 57 FIHQMESPVSNNPLLPISGEDTCEAVMSTKAALDLLHSSKKYDLIITEVFNTDCFLGFVY 116
+ + +++NPL IS + +A++ A ++ ++ L E ++ F+ +Y
Sbjct: 446 LLEVLYELLNDNPLDKISSDARRQALLCILTAFEIASAT----LYGKENYDLGGFVDLLY 501
Query: 117 KFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSYDSDM 158
V + + + +R PD PS + D++
Sbjct: 502 SM-VHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEE 542
>gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional.
Length = 373
Score = 29.6 bits (67), Expect = 4.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 279 FLRAFEQIPQR-VIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGG 331
F+R PQ +I ++GE +S ID + + W+P + +L P V F+ H G
Sbjct: 31 FVRTRTYYPQLGLIQLYDGEQLS-LIDPLGITDWSPFKALLRDPQVTKFL-HAG 82
>gnl|CDD|225103 COG2192, COG2192, Predicted carbamoyl transferase, NodU family
[Posttranslational modification, protein turnover,
chaperones].
Length = 555
Score = 29.2 bits (66), Expect = 5.0
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 378 ETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGA 429
L + G KK +++ L + ++EH + H A
Sbjct: 78 AGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLPVKVLFVEHHLAHAASA 129
>gnl|CDD|211332 cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA
family. This group is comprised of bacterial proteins
assigned to the RluA family of pseudouridine synthases.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactors are required. The
RluA family is comprised of proteins related to
Escherichia coli RluA.
Length = 246
Score = 28.4 bits (64), Expect = 7.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 354 QKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 392
Q ++ V +K F P + ET+LV LR GNP
Sbjct: 44 QDEHLLVADKPHFLPVTPRGRYVTETLLVRLRRQTGNPD 82
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 28.4 bits (64), Expect = 8.9
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 336 TEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKK 395
EAL G P++ K + + + G G + D + + ALR L P K
Sbjct: 299 AEALACGTPVV-----TTDKVPWQELIEYGCGWVVDDDV---DALAAALRRALELPQRLK 350
Query: 396 RAEKVAR 402
+ R
Sbjct: 351 AMGENGR 357
>gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional.
Length = 540
Score = 28.5 bits (64), Expect = 9.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 78 TCEAVMSTKAALDLLHSSKKYDLIITEV 105
+ + AL++L S + DL+ T++
Sbjct: 441 RTLVASNGREALEILDSHPEVDLLFTDL 468
>gnl|CDD|220811 pfam10565, NMDAR2_C, N-methyl D-aspartate receptor 2B3 C-terminus.
This domain is found at the C-terminus of many
NMDA-receptor proteins, many of which also carry the
Ligated ion-channel family pfam00060 further upstream as
well as the ANF_receptor family pfam01094. This region
is predicted to be a large extra-cellular domain of the
NMDA receptor proteins, being highly hydrophilic, and is
thought to be integrally involved in the function of the
receptor. The region also carries a number of potential
N-glycosylation sites.
Length = 660
Score = 28.6 bits (64), Expect = 9.4
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 65 VSNNPLLPISGEDTCEAVMSTKAALDLLHSSKKYDL 100
VS NP +P G+D LLH K YD+
Sbjct: 557 VSQNPFIPTFGDDQR-----------LLHGRKSYDI 581
>gnl|CDD|225154 COG2245, COG2245, Predicted membrane protein [Function unknown].
Length = 182
Score = 27.7 bits (62), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 438 LYWWQYILLDVIIALILLIAAMVWSI 463
LY+ ILL V + LI+++ A + I
Sbjct: 142 LYFIGAILLIVAVGLIIILIAAILEI 167
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,825,758
Number of extensions: 2608849
Number of successful extensions: 2960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2947
Number of HSP's successfully gapped: 67
Length of query: 484
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 383
Effective length of database: 6,457,848
Effective search space: 2473355784
Effective search space used: 2473355784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)