RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11555
(484 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 247 bits (634), Expect = 5e-81
Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 237 KSPQPLPNDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWE 295
+ +PLP +++ F+ S NGV+ FS+GS++ + ++ A QIPQ+V+W+++
Sbjct: 2 NAAKPLPKEMEDFVQSSGENGVVVFSLGSMV--SNMTEERANVIASALAQIPQKVLWRFD 59
Query: 296 GENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQK 355
G L W PQ D+L HP + FI+HGG G EA+Y G+P++GIP+F DQ
Sbjct: 60 GNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQP 119
Query: 356 ANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 406
NI ++ G V + ++ ++ +L AL+ V+ +PSYK+ K++R+ D
Sbjct: 120 DNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRIQHD 170
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 197 bits (503), Expect = 3e-58
Identities = 54/364 (14%), Positives = 106/364 (29%), Gaps = 47/364 (12%)
Query: 80 EAVMSTKAALDLLHSSKKYDLIITEVFNTDCFLGFV--YKFKVPYIAVSAAHIIPTAAER 137
+A+ + D DL++ ++ + V ++ VP +++S
Sbjct: 88 DAIQALPQLADAYADDI-PDLVLHDIT---SYPARVLARRWGVPAVSLS----------- 132
Query: 138 FGIPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLSINLMRKYYYDPKHHKVATKYFGEDL 197
+ Y + +R +++
Sbjct: 133 PNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFE-AWLKENGITE-------------H 178
Query: 198 PPLDQLARNTSLVLVNSHFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGV 257
P SLVL+ R + V + V
Sbjct: 179 PDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEEGGWQ----RPAGAEKV 234
Query: 258 IYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW-----KWEGENMSGKIDKILLKSWA 312
+ S+GS + +RAF +P + K + D + + W
Sbjct: 235 VLVSLGSAFTK---QPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWV 291
Query: 313 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 372
PQ IL +F++H G G+ E L + P+I +P DQ N +++ G L
Sbjct: 292 PQLAILRQA--DLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLAT 349
Query: 373 DQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGG--GAH 430
++ T + + ++ +P +R ++ + E RH
Sbjct: 350 EEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHERQEPVG 409
Query: 431 LRPA 434
RP
Sbjct: 410 DRPN 413
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 182 bits (463), Expect = 1e-52
Identities = 57/337 (16%), Positives = 117/337 (34%), Gaps = 27/337 (8%)
Query: 97 KYDLIITEVFNTDCFLGFV--YKFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSY 154
+ DLI+ ++ + V K+ +P++ +S PT G ++ + +
Sbjct: 109 RPDLIVYDIA---SWPAPVLGRKWDIPFVQLS-----PTFVAYEGFEEDVPAVQDPTADR 160
Query: 155 DSDMNFVQRMFNSITTLSINLMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVLVNS 214
+ ++ ++ + ++ + +A N +V +
Sbjct: 161 GEEAAAPAGTGDAEEGAEAEDGLVRFFT-RLSAFLEEHGVDTPATEFLIAPNRCIVALPR 219
Query: 215 HFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSD 274
F +N V + + V+ ++GS D
Sbjct: 220 TFQI-KGDTVGDNYTFVGPTYGDRSHQGTWE----GPGDGRPVLLIALGSAFTD---HLD 271
Query: 275 KRKAFLRAFEQIPQRVIWKWEGENMSGKIDKI----LLKSWAPQRDILDHPNVKVFISHG 330
+ L A + + V+ + ++ + W PQ DIL FI+H
Sbjct: 272 FYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDIL--TKASAFITHA 329
Query: 331 GFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 390
G T EAL + VP++ +P +Q N + + G G +P DQ+T E + A+ V +
Sbjct: 330 GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASD 389
Query: 391 PSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGG 427
P +R V + ++ A +E ++ G
Sbjct: 390 PGVAERLAAVRQEIRE--AGGARAAADILEGILAEAG 424
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 157 bits (398), Expect = 2e-43
Identities = 60/382 (15%), Positives = 121/382 (31%), Gaps = 46/382 (12%)
Query: 53 SDFFFIHQMESPVSNNPLLPISGEDTCEAVMSTKAALDLLHSSKKYDLIITEVFNTDCFL 112
S+F H E + + E V +AA + L + DL++ +VF
Sbjct: 59 SEFDTFHVPEVVKQEDAETQLHLVYVRENVAILRAAEEALGDNP-PDLVVYDVFPFIAGR 117
Query: 113 GFVYKFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLS 172
++ P + ++ A + + +D+ V +
Sbjct: 118 LLAARWDRPAVRLT-----GGFAANEHYSLFKELWKSNGQRHPADVEAVHSVLVD----- 167
Query: 173 INLMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVLVNSHFTF-IGSRPYPNNVIEV 231
L+ KY G D P + L +V +F + +
Sbjct: 168 --LLGKY--------------GVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFA-- 209
Query: 232 AGLHVKSPQPLPNDIKKFLDESVN-GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRV 290
V + + + V+ S+G+ + +A +AF P V
Sbjct: 210 ---FVGPTLTGRDGQPGWQPPRPDAPVLLVSLGNQFNE---HPEFFRACAQAFADTPWHV 263
Query: 291 IWKWEGENMSGKIDKI----LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPII 346
+ G + + W P +L H + ++HG EA +GVP++
Sbjct: 264 VMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLV 321
Query: 347 GIPMFG-DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQ 405
+P F + + V + G G L DQ+ ++ A+ + + + ++R ++ R
Sbjct: 322 LVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDIL 381
Query: 406 DRPMPPLDTAIYWIEHVIRHGG 427
A +E +
Sbjct: 382 S--SGGPARAADEVEAYLGRVA 401
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 147 bits (373), Expect = 1e-39
Identities = 55/303 (18%), Positives = 104/303 (34%), Gaps = 28/303 (9%)
Query: 132 PTAAERFGIPD---NPSYIPNAFLSYDSDMNFVQRMFNSITTLSINLMRKYYYDPKHHKV 188
A R+ P + ++ N S+ DM + I+ + + +
Sbjct: 133 QLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLAGT--------IDPLDLPVFRDTLRDL 184
Query: 189 ATKYFGEDLPPLDQLARNTSLVLVNSHFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKK 248
++ G +D L LV F + ++ G + L
Sbjct: 185 LAEH-GLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDRRFLGE---- 239
Query: 249 FLDESVNG-VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKI- 306
+ + + V+ S+G+ + RAF+ P V+ G+ + +
Sbjct: 240 WTRPADDLPVVLVSLGTTFND---RPGFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLP 296
Query: 307 ---LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK 363
W P +L V ++HGG EALY G P++ +P D + R V++
Sbjct: 297 PNVEAHRWVPHVKVL--EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQ 354
Query: 364 AGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVI 423
G G LP ++ +T+L A+ V +P+ R E + + A +E +
Sbjct: 355 LGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRR--AGGAARAADAVEAYL 412
Query: 424 RHG 426
Sbjct: 413 ARA 415
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 129 bits (327), Expect = 3e-33
Identities = 47/304 (15%), Positives = 98/304 (32%), Gaps = 37/304 (12%)
Query: 132 PTAAERFGIPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLSINLMRKYYYDPKHHKVATK 191
P AA G P D R + L + ++ DP +
Sbjct: 158 PIAAAVTGTP-----HARLLWGPDI----TTRARQNFLGLLPDQPEEHREDPLAEWLTWT 208
Query: 192 YFGEDLPPLDQ--LARNTSLVLV------NSHFTFIGSRPYPNNVIEVAGLHVKSPQPLP 243
P D+ + ++ ++ +G R N P +P
Sbjct: 209 LEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYN----------GPSVVP 258
Query: 244 NDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI 303
+ + + ++G + S + L A + +I ++ + + G
Sbjct: 259 EWLHDEPER---RRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVA 315
Query: 304 ---DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRV 360
D + + P +L P + HGG A GVP + +P D +
Sbjct: 316 NIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQR 373
Query: 361 VEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIE 420
++ G G+ LP ++T + + +++ VL +P+++ A ++ P + E
Sbjct: 374 TQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLA--EPSPAEVVGICE 431
Query: 421 HVIR 424
+
Sbjct: 432 ELAA 435
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 128 bits (324), Expect = 5e-33
Identities = 63/372 (16%), Positives = 116/372 (31%), Gaps = 51/372 (13%)
Query: 61 MESPVSNNPLLPISGEDTCEAVMSTKAALDLLHSSKKYDLIITEVFNTDCFLGFVYKFKV 120
+ + LP + V++ + + + D ++T
Sbjct: 57 VRAGAREPGELPPGAAEVVTEVVAEWFD-KVPAAIEGCDAVVTTGLLPAAVAV------- 108
Query: 121 PYIAVSAAHIIPTAAERFGIP-----DNPSYIPNAFLSYDSDMNFVQRMFNSITTLSINL 175
+ AE+ GIP +P ++P+ ++ + + + + ++N
Sbjct: 109 -----------RSMAEKLGIPYRYTVLSPDHLPSEQ--SQAERDMYNQGADRLFGDAVNS 155
Query: 176 MRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVLVNSHFTFIGSRPYPNNVIEVAGLH 235
R + L L RP ++
Sbjct: 156 HRA------------SIGLPPVEHLYDYGYTDQPWLAADPVLSPL-RPTDLGTVQTGAWI 202
Query: 236 VKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVI--WK 293
+ +PL +++ FL + +Y GS P++ + + A +RV+
Sbjct: 203 LPDQRPLSAELEGFLRAG-SPPVYVGFGSG----PAPAEAARVAIEAVRAQGRRVVLSSG 257
Query: 294 WEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGD 353
W G + D L+ + + V + HGG TT +G P + +P D
Sbjct: 258 WAGLGRIDEGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKAD 315
Query: 354 QKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLD 413
Q V G GV T E++ AL T L P + RA VA R
Sbjct: 316 QPYYAGRVADLGVGVAHDGPTPTVESLSAALATAL-TPGIRARAAAVAGTI--RTDGTTV 372
Query: 414 TAIYWIEHVIRH 425
A +E + R
Sbjct: 373 AAKLLLEAISRQ 384
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 127 bits (320), Expect = 2e-32
Identities = 56/244 (22%), Positives = 93/244 (38%), Gaps = 21/244 (8%)
Query: 193 FGEDLPPLDQLARNTSLVLVN--SHFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFL 250
G DLPP ++ + + R E+ + LP +L
Sbjct: 182 LGLDLPP-GRIDGFGNPFIDIFPPSLQEPEFRA-RPRRHELRPVPFAEQGDLPA----WL 235
Query: 251 DESVNG--VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVI----WKWEGENMSGKID 304
++Y ++G+ G + +A + + V+ + +
Sbjct: 236 SSRDTARPLVYLTLGTSSGG---TVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPA 292
Query: 305 KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA 364
+ L+SW PQ +L P+V + + HGG T AL +GVP + P GD AN + V +A
Sbjct: 293 NVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA 350
Query: 365 GFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIR 424
G G L D I+ ++V A + +L SY+ A VA MP D + +
Sbjct: 351 GAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEI--AAMPGPDEVVRLLPGFAS 408
Query: 425 HGGG 428
G
Sbjct: 409 RSAG 412
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 123 bits (310), Expect = 4e-31
Identities = 57/333 (17%), Positives = 95/333 (28%), Gaps = 32/333 (9%)
Query: 99 DLIITEVFNTDCFLGFVY--KFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSYDS 156
++T K +PY P+ P P P+ + D
Sbjct: 95 AAVVTTGLLAAAIGVRSVAEKLGIPYFYA---FHCPSYVPSPYYPPPPLGEPSTQDTIDI 151
Query: 157 DMNF--VQRMFNSITTLSINLMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVLVNS 214
+ + +N R + + +
Sbjct: 152 PAQWERNNQSAYQRYGGLLNSHRD------------AIGLPPVEDIFTFGYTDHPWVAAD 199
Query: 215 HFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSD 274
+P + ++ + +PL ++ FLD +Y GS+ P+D
Sbjct: 200 PVLAPL-QPTDLDAVQTGAWILPDERPLSPELAAFLDAG-PPPVYLGFGSL----GAPAD 253
Query: 275 KRKAFLRAFEQIPQRVIW--KWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGF 332
+ + A +RVI W + + + V I HGG
Sbjct: 254 AVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAAVIHHGGA 311
Query: 333 LGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 392
T A +G P I +P DQ V + G GV T +++ AL T L P
Sbjct: 312 GTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATAL-TPE 370
Query: 393 YKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRH 425
RA VA + A ++ V R
Sbjct: 371 THARATAVAGTIRTD--GAAVAARLLLDAVSRE 401
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 119 bits (300), Expect = 7e-30
Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 9/178 (5%)
Query: 257 VIYFSMGSIIQGKSFPSDKR--KAFLRAFEQIPQRVIWK--WEGENMSGKIDKILLKSWA 312
+ + GS + +S+ + + + + +I W
Sbjct: 212 RVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARVGWT 271
Query: 313 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 372
P + P + + H G + T L +GVP + IP +A R V G + L
Sbjct: 272 PLDVVA--PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLP 329
Query: 373 DQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAH 430
+ + E + + + + +Y +RA+ ++R MP T + +E + H H
Sbjct: 330 GEDSTEAIADSCQELQAKDTYARRAQDLSREI--SGMPLPATVVTALEQLAHH-HHHH 384
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 118 bits (296), Expect = 3e-29
Identities = 63/335 (18%), Positives = 105/335 (31%), Gaps = 53/335 (15%)
Query: 123 IAVSAAHIIPTAAERFGIP----------DNPSYIPNAFLSYDSD--------MNFVQRM 164
++AA + + AE+ G+P ++P A+ +
Sbjct: 102 GDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAAR 161
Query: 165 FNSITTLSINLMRKYYYDPKHHKVATKYFGEDLPPL-DQLARNTSLVLVNSHFTFIGSRP 223
F ++N R LPP+ D + + +
Sbjct: 162 FADRYGPTLNRRRA---------------EIGLPPVEDVFGYGHGERPLLAADPVLAPLQ 206
Query: 224 YPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAF 283
+ ++ + +PLP +++ FL + ++ GS +D K + A
Sbjct: 207 PDVDAVQTGAWLLSDERPLPPELEAFLAAG-SPPVHIGFGSSSGRG--IADAAKVAVEAI 263
Query: 284 EQIPQRVI--WKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYS 341
+RVI W + D + + V I HG A +
Sbjct: 264 RAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRA 321
Query: 342 GVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 401
GVP + IP DQ V G GV T E++ AL TVL P + RAE VA
Sbjct: 322 GVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVL-APETRARAEAVA 380
Query: 402 RLFQD-----------RPMPPLDTAIYWIEHVIRH 425
+ + A+ +EH H
Sbjct: 381 GMVLTDGAAAAADLVLAAVGREKPAVPALEHHHHH 415
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 113 bits (285), Expect = 8e-28
Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 9/174 (5%)
Query: 257 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW---KWEGENMSGKIDKILLKSWAP 313
+ MG ++ + P+ +A A E + ++ D + P
Sbjct: 220 RVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVP 279
Query: 314 QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 373
L ++ I GG A G+P + +P + DQ R + AG G+ LP +
Sbjct: 280 LNLFL--RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDE 337
Query: 374 QIT--EETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRH 425
Q E ++ TVLG+ + A K++ MP + +E+
Sbjct: 338 QAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEI--TAMPHPAALVRTLENTAAI 389
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 113 bits (284), Expect = 1e-27
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 257 VIYFSMGSIIQ---GKSFPSDKR--KAFLRAFEQIPQRVIW---KWEGENMSGKIDKILL 308
+ + G+ + + P +A + ++ V+ + + + +L
Sbjct: 229 RLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLA 288
Query: 309 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGV 368
P I+ P V + HGG T L GVP + +P+ + + R++ AG GV
Sbjct: 289 AGQFPLSAIM--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGV 346
Query: 369 TLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEH 421
+P++Q E+VL A + + SY A ++A +P + IE
Sbjct: 347 EVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEM--ATLPTPADIVRLIEQ 397
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 102 bits (255), Expect = 8e-24
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 8/157 (5%)
Query: 257 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWK--WEGENMSGKI-DKILLKSWAP 313
+ +MG+I + ++F + + A ++ + + G + + W P
Sbjct: 234 EVAITMGTI-ELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTP 292
Query: 314 QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 373
+L + HGG A+ +G+P + P DQ + + G+ L
Sbjct: 293 LHTLL--RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVST 350
Query: 374 QITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMP 410
+++ LR ++G+ S + A +V P P
Sbjct: 351 --SDKVDADLLRRLIGDESLRTAAREVREEMVALPTP 385
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 78.8 bits (195), Expect = 6e-16
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 257 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----KWEGENMSGKIDKI----LL 308
V+Y S GS++ + P + A + E+ IW + + G +++ +
Sbjct: 275 VVYISFGSVV---TPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKI 331
Query: 309 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAGFG 367
+WAPQ +IL H +V VF++H G+ E + GVP+I P FGDQ N G
Sbjct: 332 VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Query: 368 VTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 403
V + +T+E++ AL + + +K+ +L
Sbjct: 392 VGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKL 427
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 78.4 bits (194), Expect = 7e-16
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 257 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----KWEGENMSGKIDKI----LL 308
V+Y S G++ + P + A A E IW K G ++K ++
Sbjct: 273 VVYISFGTVT---TPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMV 329
Query: 309 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAGFG 367
WAPQ ++L H V F++H G+ E++ GVP+I P FGDQ+ N R V + G
Sbjct: 330 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Query: 368 VTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 403
V + T+ ++ +L KK E + L
Sbjct: 390 VRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRAL 425
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 76.9 bits (190), Expect = 3e-15
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 257 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW------KW--EG--ENMSGKIDKI 306
V++ GS+ G SF + + + R +W K EG E M + K
Sbjct: 278 VVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELE-GKG 334
Query: 307 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAG 365
++ WAPQ ++L H + F+SH G+ E+++ GVPI+ P++ +Q+ N +V++ G
Sbjct: 335 MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWG 394
Query: 366 FGVTLPYDQITEETV 380
G+ L D V
Sbjct: 395 VGLGLRVDYRKGSDV 409
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 76.2 bits (188), Expect = 6e-15
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 307 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAG 365
L+ SW PQ +L+HP++ F++H G+ TTE++ +GVP++ P F DQ + R + +
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 366 FGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 403
G+ + + + E + + V+ KK +K L
Sbjct: 416 IGMEIDTN-VKREELAKLINEVIAGDKGKKMKQKAMEL 452
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 73.4 bits (181), Expect = 4e-14
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 307 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAG 365
++ WAPQ +L HP+ F++H G+ T E++ SG+P+I P++ +QK N + E
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR 401
Query: 366 FGVTLPYDQ---ITEETVLVALRTVLGNPSYKKRAEKVARL 403
+ + E V ++ ++ K K+ L
Sbjct: 402 AALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 55/355 (15%), Positives = 105/355 (29%), Gaps = 88/355 (24%)
Query: 18 QSSKIP-NYNDISVEGSMKLQT----NDLL-LSDISYYNPLSDFFFIHQMESPVSNNPLL 71
SS I + I E L++ N LL L ++ + F
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-------------- 264
Query: 72 PISGEDTCEAVMST--KAALDLLHSSKKYDLIITEV---FNTDCFLGFVYKF---KVPYI 123
+C+ +++T K D L ++ + + D + K+ + +
Sbjct: 265 ------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 124 AVSAAHIIPTAAERFG--IPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLSINLMRKYYY 181
P I D + N + + D + +S+ L RK +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCD-KLTTIIESSLNVLEPAEYRKMFD 376
Query: 182 D----PKHHKVATKYFG--------EDLPPLDQLARNTSLVLVNSHFTFIGSRPYPNNVI 229
P + T D+ + SLV + + I
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----------KQPKESTI 426
Query: 230 EVAGLHVKSPQPLPNDI---KKFLD---------------ESVNGVIYFSMG----SIIQ 267
+ ++++ L N+ + +D ++ Y +G +I
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 268 GKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKIL--LKSWAPQRDILDH 320
+ + R FL F + Q++ N SG I L LK + P I D+
Sbjct: 487 PERM-TLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDN 537
Score = 49.5 bits (117), Expect = 2e-06
Identities = 65/469 (13%), Positives = 138/469 (29%), Gaps = 130/469 (27%)
Query: 57 FIHQMESPVSNNPLLPISGEDTCEAVMSTKAALDLLHSSKKYD---LIITEVFNTDCFLG 113
++Q++ ++ + + S +A L L SK Y+ L++ V N +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 114 FVYKFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLSI 173
F K+ ++ T + +F+ + T +S+
Sbjct: 262 FNLSCKI---------LLTT-------------------RFKQVTDFLS--AATTTHISL 291
Query: 174 NLMRKYYYDPKHHKVATKYFG---EDLPPLDQLARNTSLVLVNSHFTFIGS--RPYPN-- 226
+ + + KY +DLP T+ ++ I R
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLS----IIAESIRDGLATW 344
Query: 227 -NVIEVAGLHVKSPQPLPNDIKKFLD--ESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAF 283
N HV + L I+ L+ E F S+ FP
Sbjct: 345 DNW-----KHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSV-----FPPS--------- 384
Query: 284 EQIPQRVI---WKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY 340
IP ++ W ++ +++ + P +L
Sbjct: 385 AHIPTILLSLIW----FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK---- 436
Query: 341 SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSY----KKR 396
+ + + + +V+ T D + + + +G + +
Sbjct: 437 -------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEH 486
Query: 397 AEKVA---RLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPAS-------LELYWWQYI-- 444
E++ +F D ++E IRH A S L+ Y YI
Sbjct: 487 PERMTLFRMVFLD-----FR----FLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICD 536
Query: 445 -------LLDVIIALILLIAAMVWSIQW--LVRYALITYYNTV-DDKKR 483
L++ I+ + I + ++ L+R AL+ + ++ +
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 42.9 bits (100), Expect = 2e-04
Identities = 69/486 (14%), Positives = 115/486 (23%), Gaps = 177/486 (36%)
Query: 93 HSSKKYDLIITEVFNTDCFLGFVYKFKVPYIAVSAAHIIPTAA--ERFGIPDNPS---YI 147
+ K I VF FV F + I+ D S +
Sbjct: 16 YQYKD----ILSVFEDA----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 148 PNAFLSYDSDMNFVQRMFNSITTLSIN---LMRKYYYDPKHHKVATKYFGEDLPPLDQLA 204
LS VQ+ + L IN LM + + + T+ + E L
Sbjct: 68 FWTLLSKQE--EMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--- 120
Query: 205 RNTSLVLVNSHFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDE--SVNGVIYFSM 262
N+ A +V QP +++ L E V+ +
Sbjct: 121 ---------------------NDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGV 158
Query: 263 GSIIQGKSF-----PSDKRKAFLRAFEQIPQRVIWKWEG------------ENMSGKID- 304
GK++ + ++ W + + +ID
Sbjct: 159 LGS--GKTWVALDVCLSYK--VQCKM---DFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 305 -----------------------KILLKSWAPQRD--ILDH---PNV-KVFISHGGFLGT 335
+ LLKS + +L + F L T
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 336 TEALYSGVPIIGIPMFGDQKANIRVVE-KAGFGVTLPYDQITEETVLVALRTVLGNPSYK 394
T + V + +I + T + V L L
Sbjct: 272 TR--FKQVTDF---LSAATTTHISLDHHSMTL---------TPDEVKSLLLKYLDCRPQD 317
Query: 395 KRAEK----------VARLFQDRPMPPLDTAIYW-------IEHVIRHGGGAHLRPAS-- 435
E +A +D T W + +I L PA
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGL----ATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYR 372
Query: 436 -------------------LELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALI---- 472
L L W+ I DV++ + L +Y+L+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-----------NKLHKYSLVEKQP 421
Query: 473 ---TYY 475
T
Sbjct: 422 KESTIS 427
Score = 40.2 bits (93), Expect = 0.002
Identities = 47/290 (16%), Positives = 85/290 (29%), Gaps = 91/290 (31%)
Query: 13 LSHFPQSSKIPN------YNDISVEGSM----KLQTNDLLLSDISYYNPLSDFFFIH--Q 60
LS FP S+ IP + D+ M KL L+ P I
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIY 432
Query: 61 MESPVSNNPLLPISGEDTCEAVMSTKAALDLLHSSKKYDLIITEVFNTDCFLGFVYKFKV 120
+E + + E ++ +D + K +D ++ + Y +
Sbjct: 433 LEL------KVKLENEYALH-----RSIVDHYNIPKTFD---SDDLIPPYLDQYFYSH-I 477
Query: 121 PYIAVSAAHIIPT-AAERFGIPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLSINLMRKY 179
+ H+ ER + FL D F++ +K
Sbjct: 478 GH------HLKNIEHPERM------TLFRMVFL----DFRFLE--------------QKI 507
Query: 180 YYDPKHHKVATKYFGEDLPPLDQLARNTSLVLVNSHFTFIGSRPYPNNVIEVAGLHVKSP 239
+H A G L L QL + Y + + +
Sbjct: 508 ----RHDSTAWNASGSILNTLQQL------------------KFYKPYICD----NDPKY 541
Query: 240 QPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQR 289
+ L N I FL + +I +++ + ++ F A +Q+ QR
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAHKQV-QR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 55/368 (14%), Positives = 110/368 (29%), Gaps = 105/368 (28%)
Query: 116 YKFKVP---YIAVSA-----AHIIPTAAERFGIPDNPSYIPNAFLSYDSDMNFVQRM--- 164
+ VP + S I+P E F D P+ + + +V +
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVEP 74
Query: 165 -----FNSITTLSIN-LMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVLVNSHFT- 217
F+ + L + Y H +A K L + + L+ ++ T
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK-----LLQENDTTLVKTKELIKNYITA 129
Query: 218 -FIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQG-------- 268
+ RP+ KS L + + + + G QG
Sbjct: 130 RIMAKRPFDK----------KSNSALFRAVG---EGNAQ--LVAIFGG--QGNTDDYFEE 172
Query: 269 -----KSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGK-IDKILLKSWAPQRDILDHPN 322
+++ + E + + + + E + + ++ + W L++P+
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN---ILEW------LENPS 223
Query: 323 VKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GF----------GVTLP 371
+L + S P+IG+ Q A+ V K GF G T
Sbjct: 224 NT---PDKDYLLS--IPIS-CPLIGVI----QLAHYVVTAKLLGFTPGELRSYLKGAT-- 271
Query: 372 YDQITEETVLVALRTVLGN--PSYKKRAEKVAR-LF-------QDRPMPPLDTAIYWIEH 421
+ ++ A+ + S+ K LF + P L +I +E
Sbjct: 272 ---GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI--LED 326
Query: 422 VIRHGGGA 429
+ + G
Sbjct: 327 SLENNEGV 334
Score = 42.0 bits (98), Expect = 5e-04
Identities = 63/404 (15%), Positives = 120/404 (29%), Gaps = 147/404 (36%)
Query: 6 HGHVVDILSHFPQSSKIPNYNDI-SVEGSMKLQTNDLLLSDISYYNPLSDFFFIHQME-S 63
++IL S P+ + + S+ S L + + +++Y + +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPL----IGVIQLAHY-----VVTAKLLGFT 259
Query: 64 PVSNNPLLPISGEDTC-EAVMSTKAAL--------DLLHSSKKYDLIITEVFNTDCFLGF 114
P L G + +++ A S +K IT +F F+G
Sbjct: 260 PGELRSYL--KGATGHSQGLVT--AVAIAETDSWESFFVSVRKA---ITVLF----FIGV 308
Query: 115 VYKFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSYDSDMNFVQRMFNSITTLSIN 174
P ++ + + + G+P S M SI+ L+
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVP-----------SP---------ML-SISNLTQE 347
Query: 175 LMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLVLVNSHFTFIGSRPYPNNVIEVAGL 234
++ Y LP Q+ + LVN N++ V+G
Sbjct: 348 QVQDY----------VNKTNSHLPAGKQV----EISLVNG----------AKNLV-VSG- 381
Query: 235 HVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKA-----FLR-------- 281
+S L ++K S + Q + P +RK FL
Sbjct: 382 PPQSLYGLNLTLRKAKAPS----------GLDQSRI-PFSERKLKFSNRFLPVASPFHSH 430
Query: 282 ----AFEQIPQR-----VIWK-----------WEGENM---SGKIDKILLKSWAPQRDIL 318
A + I + V + ++G ++ SG I + ++ I+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV------DCII 484
Query: 319 DHP-----NVKVFISH------GGFLGTTEALY-----SGVPII 346
P + +H GG G + +GV +I
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 37.7 bits (87), Expect = 0.008
Identities = 69/466 (14%), Positives = 123/466 (26%), Gaps = 162/466 (34%)
Query: 111 FLGFVYKFKVPYIAVSAAHIIPTAAERFGIPDNPSYIPNAFLSYDSDMN-FVQRMFNSIT 169
FLG+V P ++ F N +L +D++ ++
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFE---------NCYLE-GNDIHALAAKLLQEND 113
Query: 170 TLSI---NLMRKYYY--------DPKHH----------KVATKY--F---GEDLPPLDQL 203
T + L++ Y K A F G ++L
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 204 ARNTSLVLVNSHFTFIGSRPYPNNVIEVAGLHVKSPQPLPN----------DIKKFLD-- 251
L ++ +G +I+ + + +I ++L+
Sbjct: 174 RD-----LYQTYHVLVGD------LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 252 ESVNGVIYF-----SMGSI--IQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKID 304
+ Y S I IQ + + P + +G +G
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHY-----VVTAKLLGFTPGELRSYLKG--ATGHSQ 275
Query: 305 KILL-------KSWAPQRDILDHPNVKV--FI---SHGGF---------LGTTEALYSGV 343
++ SW + + V FI + + L + GV
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 344 PIIGIPMFG----DQKANIRVVEKAGFGVTLPYDQITEETVLVALR-----TVL-GNPS- 392
P PM Q+ V K LP + V ++L V+ G P
Sbjct: 335 P---SPMLSISNLTQEQVQDYVNK--TNSHLP----AGKQVEISLVNGAKNLVVSGPPQS 385
Query: 393 -Y-------KKRAEKVARLFQDR-PM----PPLD------TAIYWIEHVIRHGGGAHLRP 433
Y K +A + L Q R P + + H L P
Sbjct: 386 LYGLNLTLRKAKAP--SGLDQSRIPFSERKLKFSNRFLPVASPF---H------SHLLVP 434
Query: 434 ASLELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALITYYNTVD 479
AS I D++ ++ + + I Y+T D
Sbjct: 435 AS------DLINKDLVKN----------NVSFNAKDIQIPVYDTFD 464
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 37.5 bits (86), Expect = 0.010
Identities = 29/253 (11%), Positives = 72/253 (28%), Gaps = 33/253 (13%)
Query: 122 YIAVSAAHIIPTAAER--FGIPDNPSYIPNAF--LSYDSDMNFVQRMFNSITTLSINLMR 177
+ A++ P ++ N +I + L+ F+ + +
Sbjct: 385 FFIGDHANMFPHLKKKAVIDFKSN-GHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDG 443
Query: 178 KYYYDPKHHKVATKYFGEDL---PPLDQLARNTSLVLVNSHFTFIGSRPYPNNVIEVAGL 234
D + + + ++ + R + +N G N G
Sbjct: 444 GDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGE 503
Query: 235 HVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKW 294
V + + + ++Y + + K P + + +++P V+W
Sbjct: 504 EVPRTIIVT--TRSQYGLPEDAIVYCNFNQLY--KIDP-STLQMWANILKRVPNSVLWLL 558
Query: 295 EGENMSGKIDKILLKSW--APQRDIL-----------DHPNVKVFIS---HGGFLGTT-- 336
+ + ++ R I V + G TT
Sbjct: 559 RFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNG--HTTGM 616
Query: 337 EALYSGVPIIGIP 349
+ L++G P++ +P
Sbjct: 617 DVLWAGTPMVTMP 629
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 36.7 bits (83), Expect = 0.012
Identities = 31/246 (12%), Positives = 66/246 (26%), Gaps = 28/246 (11%)
Query: 151 FLSYDSDMNFVQRMFNSITTLSINLMRKYYYDPKHHKVATKYFGEDLPPLDQLARNTSLV 210
F + + + + + LS + + K K +D
Sbjct: 33 FACLPLEGSLIDEIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLET 92
Query: 211 LVNSHFTFIGSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGVIYFSMGSIIQGKS 270
V +P+ +++ + K+ K E G Y + ++
Sbjct: 93 GVKILSFDDEIKPHHCDILLNVNAYAKASDYEGLVPFKC--EVRCGFSYALIREEFYQEA 150
Query: 271 F--------------PSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRD 316
+D + L+ ++P+ I + + + K L K +
Sbjct: 151 KENRKKKYDFFICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKK-LQKFAKLHNN 209
Query: 317 ILDHPNVK----------VFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGF 366
I + + I EAL I +Q++ + K G+
Sbjct: 210 IRLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKKGY 268
Query: 367 GVTLPY 372
V Y
Sbjct: 269 EVEYKY 274
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 34.8 bits (79), Expect = 0.044
Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 13/155 (8%)
Query: 265 IIQ-GKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 323
IIQ G+++ S+ Q + I + +L+ +
Sbjct: 66 IIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKM 125
Query: 324 K--------VFISHGGFLGTTEALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLP 371
+ + ISH G ++L P+I M Q+ + G+ +
Sbjct: 126 QSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCA 185
Query: 372 YDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 406
+ L A +T P RL +
Sbjct: 186 PTETGLIAGLRASQTEKLKPFPVSHNPSFERLLVE 220
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation;
1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Length = 543
Score = 30.1 bits (67), Expect = 2.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 380 VLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEH 421
V+ L + G+P Y+KRAE + R P +YW H
Sbjct: 66 VMSGLSQLSGDPRYQKRAEDIVRYHFQNYQDP-SGLLYWGGH 106
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.2
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 35/63 (55%)
Query: 18 QSSKIPNYNDISVEGSMKLQTNDLLLSDISYYNPLSDFFFIHQMESPVSNNPLLPISGED 77
Q+ K ++ S+KL Y +S P L I
Sbjct: 20 QALK-------KLQASLKL------------YAD----------DSA----PALAIKA-- 44
Query: 78 TCE 80
T E
Sbjct: 45 TME 47
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 29.0 bits (65), Expect = 4.4
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 394 KKRAEKVARLFQDRPMPPLDTA-IYWIEHVIRHGGGA----HLRPASLELYWWQYILLDV 448
+K + R +Q + P +YW + H A L L W + V
Sbjct: 458 RKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMASANMHKELCALMFSLDWIKAKTELV 517
Query: 449 IIALILLIAAMVWSIQ 464
A ++ I
Sbjct: 518 GPAHLIHEFVAYRHIL 533
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A
{Mycobacterium tuberculosis}
Length = 309
Score = 28.4 bits (64), Expect = 5.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 220 GSRPYPNNVIEVAGLHVKSPQPLPNDIKKFLDESVNGVI 258
GS PY + + V G H+ P P+ ++ + + + VI
Sbjct: 231 GSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVI 269
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 28.2 bits (62), Expect = 6.9
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 16/136 (11%)
Query: 283 FEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRD----ILDHPNVKVFISHG-GF-LGTT 336
I R + +N+ ++KI++ + + + +V V S G GF L +
Sbjct: 232 LHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSA 291
Query: 337 EALYSGVPII-----GIPMFGDQKANIRV-----VEKAGFGVTLPYDQITEETVLVALRT 386
E G P+I G + ++ + + I + LV T
Sbjct: 292 EGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFT 351
Query: 387 VLGNPSYKKRAEKVAR 402
+ +K K +
Sbjct: 352 FFKDEKNRKEYGKRVQ 367
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding
protein; 1.00A {Staphylococcus aureus subsp}
Length = 130
Score = 27.1 bits (60), Expect = 7.9
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 440 WWQYILLDVIIALILLIAAMVWSIQWLV 467
+ I L VI+ + +LI ++W + L+
Sbjct: 102 SKEPIQLLVIMGITVLITLLLWIMLVLI 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,836,797
Number of extensions: 491390
Number of successful extensions: 1270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1232
Number of HSP's successfully gapped: 45
Length of query: 484
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 387
Effective length of database: 3,993,456
Effective search space: 1545467472
Effective search space used: 1545467472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)