Query psy11557
Match_columns 61
No_of_seqs 103 out of 384
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:32:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05848 Ig1_Contactin-5 First 99.4 2.7E-12 5.8E-17 73.9 5.9 44 10-55 1-47 (94)
2 cd05850 Ig1_Contactin-2 First 99.3 9.5E-12 2.1E-16 71.5 6.3 46 10-57 1-49 (94)
3 cd07693 Ig1_Robo First immunog 99.3 2.1E-11 4.7E-16 68.3 5.8 44 10-55 1-44 (100)
4 cd05849 Ig1_Contactin-1 First 99.2 3.1E-11 6.6E-16 69.6 5.9 43 10-54 1-46 (93)
5 cd05749 Ig2_Tyro3_like Second 99.2 3E-11 6.6E-16 68.5 4.9 41 13-55 1-42 (81)
6 cd05851 Ig3_Contactin-1 Third 99.2 4.8E-11 1.1E-15 67.8 5.7 42 10-53 1-42 (88)
7 cd05762 Ig8_MLCK Eighth immuno 99.1 1.6E-10 3.5E-15 67.0 5.7 44 11-56 1-44 (98)
8 cd04967 Ig1_Contactin First Ig 99.1 4E-10 8.6E-15 63.8 6.6 44 10-55 1-47 (91)
9 cd05737 Ig_Myomesin_like_C C-t 99.1 2.6E-10 5.7E-15 64.8 5.6 43 12-55 2-44 (92)
10 cd05722 Ig1_Neogenin First imm 99.1 2.9E-10 6.2E-15 64.7 5.7 43 12-56 1-43 (95)
11 cd04972 Ig_TrkABC_d4 Fourth do 99.1 2.5E-10 5.5E-15 64.5 5.1 39 15-54 4-42 (90)
12 PF07679 I-set: Immunoglobulin 99.1 4.5E-10 9.7E-15 62.4 5.4 43 11-55 1-43 (90)
13 cd05747 Ig5_Titin_like M5, fif 99.1 5.1E-10 1.1E-14 63.5 5.5 45 9-55 2-46 (92)
14 cd04968 Ig3_Contactin_like Thi 99.0 7.1E-10 1.5E-14 62.2 5.2 41 10-51 1-41 (88)
15 cd05868 Ig4_NrCAM Fourth immun 99.0 5.9E-10 1.3E-14 61.7 4.4 30 26-56 1-30 (76)
16 cd05728 Ig4_Contactin-2-like F 99.0 7.3E-10 1.6E-14 62.3 4.6 42 13-56 2-43 (85)
17 cd05739 Ig3_RPTP_IIa_LAR_like 99.0 9.8E-10 2.1E-14 60.2 4.1 28 26-54 1-28 (69)
18 cd05869 Ig5_NCAM-1 Fifth immun 98.9 3E-09 6.5E-14 60.9 5.6 43 10-54 2-44 (97)
19 cd05745 Ig3_Peroxidasin Third 98.9 2.1E-09 4.6E-14 58.8 3.8 29 25-54 1-29 (74)
20 cd05870 Ig5_NCAM-2 Fifth immun 98.9 6.6E-09 1.4E-13 59.6 6.0 42 10-53 2-44 (98)
21 cd05894 Ig_C5_MyBP-C C5 immuno 98.9 4.7E-09 1E-13 59.5 5.1 36 19-55 3-38 (86)
22 cd05730 Ig3_NCAM-1_like Third 98.9 7.1E-09 1.5E-13 58.7 5.1 44 11-55 2-46 (95)
23 cd05867 Ig4_L1-CAM_like Fourth 98.9 5.3E-09 1.1E-13 57.5 4.4 29 26-55 1-29 (76)
24 cd05773 Ig8_hNephrin_like Eigh 98.8 7.3E-09 1.6E-13 61.0 5.0 46 9-55 3-51 (109)
25 cd04978 Ig4_L1-NrCAM_like Four 98.8 9.6E-09 2.1E-13 55.7 4.1 30 26-56 1-30 (76)
26 cd05865 Ig1_NCAM-1 First immun 98.8 1.5E-08 3.2E-13 58.8 5.1 39 15-54 5-44 (96)
27 cd05874 Ig6_NrCAM Sixth immuno 98.8 8.8E-09 1.9E-13 57.3 3.9 25 29-54 1-25 (77)
28 cd05758 Ig5_KIRREL3-like Fifth 98.8 3.6E-08 7.7E-13 56.5 6.5 43 10-55 2-45 (98)
29 cd05857 Ig2_FGFR Second immuno 98.8 1.6E-08 3.6E-13 55.9 4.5 33 22-55 5-37 (85)
30 cd04975 Ig4_SCFR_like Fourth i 98.8 1.6E-08 3.4E-13 59.4 4.6 36 19-55 11-47 (101)
31 cd05733 Ig6_L1-CAM_like Sixth 98.8 1.2E-08 2.6E-13 56.4 3.8 25 29-54 1-25 (77)
32 cd05738 Ig2_RPTP_IIa_LAR_like 98.7 1.5E-08 3.3E-13 55.5 4.0 25 29-54 1-25 (74)
33 cd05723 Ig4_Neogenin Fourth im 98.7 1.6E-08 3.4E-13 55.1 3.9 25 29-54 2-26 (71)
34 cd05875 Ig6_hNeurofascin_like 98.7 1.6E-08 3.5E-13 56.2 4.0 25 29-54 1-25 (77)
35 cd05892 Ig_Myotilin_C C-termin 98.7 1.4E-08 3E-13 56.7 3.5 25 29-54 1-25 (75)
36 cd05891 Ig_M-protein_C C-termi 98.7 3.3E-08 7.2E-13 56.4 5.1 38 17-55 7-44 (92)
37 cd05893 Ig_Palladin_C C-termin 98.7 1.8E-08 3.9E-13 56.1 3.9 25 29-54 1-25 (75)
38 cd05852 Ig5_Contactin-1 Fifth 98.7 1.7E-08 3.6E-13 55.8 3.6 28 26-54 1-28 (73)
39 cd05732 Ig5_NCAM-1_like Fifth 98.7 3.3E-08 7.1E-13 55.8 4.8 41 10-53 2-42 (96)
40 cd05724 Ig2_Robo Second immuno 98.7 4.9E-08 1.1E-12 53.8 5.2 37 18-55 3-40 (86)
41 cd05743 Ig_Perlecan_D2_like Im 98.7 2.6E-08 5.5E-13 55.0 3.8 29 26-55 1-29 (78)
42 cd05760 Ig2_PTK7 Second immuno 98.7 2.5E-08 5.4E-13 55.1 3.7 27 29-56 1-27 (77)
43 cd04974 Ig3_FGFR Third immunog 98.7 2.7E-08 5.9E-13 56.4 3.9 23 26-48 1-23 (90)
44 cd05863 Ig2_VEGFR-3 Second imm 98.7 2.2E-08 4.9E-13 55.1 3.4 25 29-54 1-25 (67)
45 cd05746 Ig4_Peroxidasin Fourth 98.7 2.1E-08 4.6E-13 54.2 3.0 26 29-55 1-26 (69)
46 cd05764 Ig_2 Subgroup of the i 98.7 4.5E-08 9.8E-13 53.1 4.2 30 26-55 1-30 (74)
47 cd05859 Ig4_PDGFR-alpha Fourth 98.7 4.8E-08 1E-12 57.1 4.6 34 21-55 13-46 (101)
48 cd05744 Ig_Myotilin_C_like Imm 98.7 4E-08 8.7E-13 54.2 4.0 25 29-54 1-25 (75)
49 cd05866 Ig1_NCAM-2 First immun 98.6 6.9E-08 1.5E-12 55.8 4.8 38 18-56 7-44 (92)
50 cd04969 Ig5_Contactin_like Fif 98.6 4.8E-08 1E-12 53.1 4.0 29 26-55 1-29 (73)
51 KOG3513|consensus 98.6 4.5E-08 9.9E-13 75.8 4.8 46 9-56 330-375 (1051)
52 cd05856 Ig2_FGFRL1-like Second 98.6 8.2E-08 1.8E-12 52.2 4.3 33 21-54 4-36 (82)
53 cd05763 Ig_1 Subgroup of the i 98.6 5.5E-08 1.2E-12 53.0 3.5 22 29-50 1-22 (75)
54 cd05864 Ig2_VEGFR-2 Second imm 98.6 5.4E-08 1.2E-12 53.7 3.4 26 29-55 1-26 (70)
55 cd05752 Ig1_FcgammaR_like Frst 98.6 2E-07 4.3E-12 52.3 5.7 41 11-53 1-42 (78)
56 cd05740 Ig_CEACAM_D4 Fourth im 98.6 1.7E-07 3.6E-12 53.7 5.2 41 11-53 2-43 (91)
57 cd05876 Ig3_L1-CAM Third immun 98.6 5.9E-08 1.3E-12 52.8 3.1 22 29-50 1-22 (71)
58 cd05748 Ig_Titin_like Immunogl 98.6 8.7E-08 1.9E-12 52.0 3.7 26 29-55 2-27 (74)
59 cd05845 Ig2_L1-CAM_like Second 98.6 9.8E-08 2.1E-12 56.1 4.0 45 10-54 2-47 (95)
60 cd04976 Ig2_VEGFR Second immun 98.5 1.1E-07 2.3E-12 52.0 3.5 26 29-55 1-26 (71)
61 cd05858 Ig3_FGFR-2 Third immun 98.5 1.4E-07 3.1E-12 53.2 4.1 23 26-48 1-23 (90)
62 cd04971 Ig_TrKABC_d5 Fifth dom 98.5 1.2E-07 2.7E-12 53.4 3.5 27 30-57 2-28 (81)
63 cd04977 Ig1_NCAM-1_like First 98.5 3.1E-07 6.8E-12 52.3 5.1 39 15-55 5-43 (92)
64 cd05855 Ig_TrkB_d5 Fifth domai 98.5 1.4E-07 3.1E-12 53.4 3.4 27 30-57 2-28 (79)
65 cd05736 Ig2_Follistatin_like S 98.5 2E-07 4.4E-12 50.8 3.8 26 29-55 1-26 (76)
66 cd04973 Ig1_FGFR First immunog 98.5 3.3E-07 7.1E-12 50.8 4.7 35 20-56 3-37 (79)
67 cd07702 Ig2_VEGFR-1 Second imm 98.5 1.5E-07 3.3E-12 52.4 3.3 26 29-55 1-26 (72)
68 cd05734 Ig7_DSCAM Seventh immu 98.5 1.2E-07 2.6E-12 52.2 2.7 23 29-51 1-23 (79)
69 cd05754 Ig3_Perlecan_like Thir 98.5 6.6E-07 1.4E-11 49.7 5.7 37 13-49 3-40 (85)
70 cd05735 Ig8_DSCAM Eight immuno 98.5 2.7E-07 5.8E-12 52.3 4.1 28 26-54 1-28 (88)
71 cd05731 Ig3_L1-CAM_like Third 98.5 2.3E-07 5E-12 49.5 3.3 22 29-50 1-22 (71)
72 cd05882 Ig1_Necl-1 First (N-te 98.5 4.6E-07 1E-11 52.6 4.8 32 20-51 6-37 (95)
73 KOG4222|consensus 98.4 2E-07 4.4E-12 72.9 3.6 53 4-58 25-78 (1281)
74 cd05726 Ig4_Robo Fhird immunog 98.4 3.1E-07 6.7E-12 51.7 3.5 25 26-50 1-25 (90)
75 cd05725 Ig3_Robo Third immunog 98.4 3.1E-07 6.8E-12 49.3 3.0 22 29-50 1-22 (69)
76 cd07701 Ig1_Necl-3 First (N-te 98.4 8.8E-07 1.9E-11 51.0 4.8 33 19-51 5-37 (95)
77 cd05765 Ig_3 Subgroup of the i 98.4 4.9E-07 1.1E-11 49.3 3.2 23 26-48 1-23 (81)
78 cd05854 Ig6_Contactin-2 Sixth 98.4 1.1E-06 2.3E-11 49.6 4.6 27 28-55 2-30 (85)
79 cd05750 Ig_Pro_neuregulin Immu 98.3 7.2E-07 1.6E-11 48.0 3.6 26 29-55 1-27 (75)
80 KOG3513|consensus 98.3 6.5E-07 1.4E-11 69.5 4.7 51 4-54 234-284 (1051)
81 cd05873 Ig_Sema4D_like Immunog 98.3 1.8E-06 3.9E-11 49.8 5.1 36 19-56 4-39 (87)
82 KOG4194|consensus 98.3 5E-07 1.1E-11 68.0 2.9 44 8-52 610-653 (873)
83 cd05729 Ig2_FGFR_like Second i 98.3 2.3E-06 5E-11 46.4 4.8 32 22-54 5-36 (85)
84 cd04979 Ig_Semaphorin_C Immuno 98.3 2E-06 4.4E-11 48.2 4.5 34 18-53 3-36 (89)
85 cd04970 Ig6_Contactin_like Six 98.2 2E-06 4.3E-11 47.9 4.1 26 28-54 2-29 (85)
86 PF13895 Ig_2: Immunoglobulin 98.2 4.7E-06 1E-10 44.4 5.1 41 10-54 1-41 (80)
87 cd05759 Ig2_KIRREL3-like Secon 98.1 4.5E-06 9.7E-11 46.1 4.1 25 29-54 2-27 (82)
88 cd05717 Ig1_Necl-1-3_like Firs 98.1 1E-05 2.2E-10 45.8 5.2 34 19-52 5-38 (95)
89 KOG4221|consensus 98.1 5.6E-06 1.2E-10 65.4 4.8 42 10-53 237-278 (1381)
90 cd05756 Ig1_IL1R_like First im 98.1 5E-06 1.1E-10 47.9 3.2 30 22-52 10-44 (94)
91 PHA02785 IL-beta-binding prote 98.0 1.7E-05 3.7E-10 54.3 5.8 39 14-54 224-265 (326)
92 smart00408 IGc2 Immunoglobulin 98.0 1.2E-05 2.5E-10 40.3 3.8 28 26-54 2-29 (63)
93 PHA02826 IL-1 receptor-like pr 98.0 2.1E-05 4.6E-10 51.9 5.3 36 19-55 137-177 (227)
94 cd05727 Ig2_Contactin-2-like S 97.9 1.5E-05 3.2E-10 46.9 3.6 39 13-52 5-44 (96)
95 cd05885 Ig2_Necl-4 Second immu 97.9 2.3E-05 4.9E-10 44.7 3.9 26 29-55 2-28 (80)
96 cd05742 Ig1_VEGFR_like First i 97.9 1.5E-05 3.3E-10 44.2 3.1 24 26-49 1-26 (84)
97 cd00098 IgC Immunoglobulin Con 97.8 3.6E-05 7.8E-10 43.0 4.0 30 25-55 12-43 (95)
98 cd05761 Ig2_Necl-1-4_like Seco 97.8 3.7E-05 8E-10 42.9 4.0 26 29-55 2-28 (82)
99 smart00410 IG_like Immunoglobu 97.8 8.2E-05 1.8E-09 38.8 5.2 34 20-53 3-36 (86)
100 smart00409 IG Immunoglobulin. 97.8 8.2E-05 1.8E-09 38.8 5.2 34 20-53 3-36 (86)
101 cd07690 Ig1_CD4 First immunogl 97.8 5.6E-05 1.2E-09 44.0 4.8 30 22-51 3-32 (94)
102 cd05861 Ig1_PDGFR-alphabeta Fr 97.8 3.8E-05 8.2E-10 43.1 3.8 24 26-49 1-24 (84)
103 cd05895 Ig_Pro_neuregulin-1 Im 97.8 3.9E-05 8.5E-10 41.7 3.6 25 29-54 1-26 (76)
104 cd05853 Ig6_Contactin-4 Sixth 97.8 4.2E-05 9.1E-10 43.8 3.9 26 28-54 2-29 (85)
105 cd07705 Ig2_Necl-1 Second immu 97.8 4.6E-05 9.9E-10 43.0 4.0 25 29-54 2-27 (83)
106 cd05898 Ig5_KIRREL3 Fifth immu 97.7 0.00015 3.1E-09 42.6 5.6 42 10-54 2-44 (98)
107 cd05884 Ig2_Necl-3 Second immu 97.7 8.1E-05 1.8E-09 42.1 4.0 26 29-55 2-28 (83)
108 cd05753 Ig2_FcgammaR_like Seco 97.6 0.00018 3.9E-09 40.3 4.9 39 13-54 3-42 (83)
109 cd05769 IgC_TCR_beta T cell re 97.6 0.00016 3.4E-09 43.6 4.3 44 10-54 2-47 (115)
110 cd05771 IgC_Tapasin_R Tapasin- 97.6 0.00036 7.8E-09 42.0 5.9 40 9-49 37-78 (139)
111 PF13927 Ig_3: Immunoglobulin 97.6 9.1E-05 2E-09 38.6 2.8 35 10-46 1-36 (75)
112 KOG4222|consensus 97.5 9.9E-05 2.1E-09 58.3 3.6 45 8-53 313-357 (1281)
113 PF08205 C2-set_2: CD80-like C 97.5 0.00023 4.9E-09 39.6 4.2 27 26-52 14-41 (89)
114 PF00047 ig: Immunoglobulin do 97.5 0.00015 3.2E-09 37.8 3.1 27 26-52 1-28 (64)
115 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.00039 8.5E-09 39.5 5.0 25 26-51 14-40 (93)
116 cd05772 IgC_SIRP Signal-regula 97.5 0.00035 7.7E-09 41.7 4.8 30 24-54 19-50 (111)
117 cd05871 Ig_Semaphorin_classIII 97.5 0.00025 5.5E-09 40.5 4.0 27 21-48 6-32 (91)
118 cd04983 IgV_TCR_alpha_like Imm 97.4 0.0004 8.6E-09 39.7 4.7 33 16-48 3-35 (109)
119 cd05899 IgV_TCR_beta Immunoglo 97.4 0.00039 8.4E-09 40.2 4.6 33 15-49 3-35 (110)
120 cd05766 IgC_MHC_II_beta Class 97.4 0.00068 1.5E-08 39.1 5.4 29 25-54 13-43 (94)
121 cd05757 Ig2_IL1R_like Second i 97.4 0.0002 4.3E-09 41.2 3.1 32 23-55 7-43 (92)
122 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00024 5.2E-09 41.6 3.5 40 13-54 4-45 (102)
123 cd07699 IgC_L Immunoglobulin C 97.4 0.00034 7.4E-09 40.7 4.1 43 11-54 2-46 (100)
124 KOG4221|consensus 97.4 0.00012 2.6E-09 58.2 2.5 47 7-55 325-371 (1381)
125 cd04980 IgV_L_kappa Immunoglob 97.3 0.00073 1.6E-08 38.8 5.0 35 13-48 3-38 (106)
126 cd05883 Ig2_Necl-2 Second immu 97.3 0.00043 9.4E-09 39.7 4.0 26 29-55 2-28 (82)
127 smart00407 IGc1 Immunoglobulin 97.2 0.00073 1.6E-08 37.0 3.8 24 29-53 2-27 (75)
128 cd05755 Ig2_ICAM-1_like Second 97.2 0.0016 3.4E-08 38.6 5.4 31 23-54 13-46 (100)
129 cd04982 IgV_TCR_gamma Immunogl 97.2 0.00091 2E-08 38.8 4.3 31 18-48 5-37 (116)
130 cd05881 Ig1_Necl-2 First (N-te 96.9 0.0035 7.7E-08 36.5 5.3 35 19-53 5-39 (95)
131 cd05872 Ig_Sema4B_like Immunog 96.9 0.0014 3E-08 37.7 3.5 34 20-55 5-38 (85)
132 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0019 4.1E-08 37.5 3.2 31 22-52 10-43 (96)
133 PF07654 C1-set: Immunoglobuli 96.7 0.0044 9.5E-08 34.3 4.2 28 26-54 8-37 (83)
134 cd05847 IgC_CH2_IgE CH2 domain 96.6 0.0038 8.1E-08 36.1 3.8 27 26-53 14-42 (94)
135 cd05862 Ig1_VEGFR First immuno 96.5 0.0054 1.2E-07 34.4 3.7 26 26-51 1-28 (86)
136 cd05751 Ig1_LILRB1_like First 96.5 0.011 2.5E-07 33.2 5.0 39 10-52 2-40 (91)
137 cd05767 IgC_MHC_II_alpha Class 96.4 0.014 3.1E-07 33.7 5.4 28 26-54 15-44 (94)
138 cd07697 IgC_TCR_gamma T cell r 96.4 0.0039 8.4E-08 36.4 2.9 31 23-54 13-45 (96)
139 PHA02826 IL-1 receptor-like pr 96.3 0.0057 1.2E-07 40.4 3.6 32 18-49 29-71 (227)
140 cd00096 Ig Immunoglobulin doma 96.2 0.011 2.3E-07 28.7 3.5 23 29-52 1-23 (74)
141 PHA02785 IL-beta-binding prote 96.2 0.0055 1.2E-07 42.0 3.0 26 24-49 39-69 (326)
142 cd00099 IgV Immunoglobulin var 96.1 0.011 2.5E-07 33.1 3.8 27 23-49 3-30 (105)
143 cd05860 Ig4_SCFR Fourth immuno 96.0 0.019 4.1E-07 34.2 4.6 35 19-54 11-46 (101)
144 cd07706 IgV_TCR_delta Immunogl 95.9 0.023 5E-07 33.0 4.6 34 14-48 3-37 (116)
145 cd07704 Ig2_Nectin-3-4_like Se 95.9 0.024 5.3E-07 33.4 4.6 32 17-48 7-40 (97)
146 KOG4194|consensus 95.7 0.0098 2.1E-07 45.6 2.9 41 10-51 706-747 (873)
147 cd04984 IgV_L_lambda Immunoglo 95.7 0.018 3.9E-07 32.5 3.4 27 23-49 3-31 (98)
148 cd05770 IgC_beta2m Class I maj 95.6 0.017 3.7E-07 33.5 3.2 28 26-54 15-44 (93)
149 PF06832 BiPBP_C: Penicillin-B 95.4 0.14 3.1E-06 28.8 6.4 50 3-54 3-55 (89)
150 cd07703 Ig2_Nectin-2_like Seco 95.3 0.038 8.2E-07 32.2 3.8 21 28-48 17-38 (95)
151 cd05897 Ig2_IL1R2_like Second 95.3 0.025 5.4E-07 33.0 3.0 31 24-55 8-43 (95)
152 PF07686 V-set: Immunoglobulin 95.2 0.038 8.3E-07 30.6 3.7 33 16-48 6-39 (114)
153 cd05719 Ig2_PVR_like Second im 95.1 0.041 9E-07 31.8 3.5 21 28-48 17-38 (95)
154 cd04986 IgC_CH2 CH2 domain (se 95.0 0.063 1.4E-06 31.7 4.2 38 12-50 6-46 (99)
155 cd04985 IgC_CH1 CH1 domain (fi 94.8 0.13 2.9E-06 29.6 5.2 38 12-52 4-43 (95)
156 cd07700 IgV_CD8_beta Immunoglo 94.7 0.073 1.6E-06 30.6 4.0 28 22-49 2-30 (107)
157 cd05715 Ig_P0-like Immunoglobu 94.6 0.082 1.8E-06 30.8 4.1 31 18-48 5-39 (116)
158 cd05741 Ig_CEACAM_D1_like Firs 94.3 0.054 1.2E-06 29.7 2.7 24 26-49 1-24 (92)
159 PHA03052 Hypothetical protein; 94.3 0.16 3.4E-06 28.6 4.5 34 19-53 5-41 (69)
160 cd05714 Ig_CSPGs_LP Immunoglob 94.3 0.079 1.7E-06 30.1 3.4 23 26-48 2-30 (106)
161 cd05880 Ig_EVA1 Immunoglobulin 94.2 0.12 2.5E-06 30.4 4.1 30 18-47 5-38 (115)
162 cd05711 Ig_FcalphaRI Immunoglo 94.1 0.25 5.4E-06 28.0 5.2 36 11-49 2-37 (94)
163 PHA02987 Ig domain OX-2-like p 93.5 0.16 3.5E-06 33.4 4.1 31 20-50 24-55 (189)
164 cd05877 Ig_LP_like Immunoglobu 93.1 0.17 3.7E-06 28.7 3.4 24 26-49 2-31 (106)
165 cd05720 Ig_CD8_alpha Immunoglo 93.1 0.18 3.9E-06 29.0 3.5 27 23-49 3-29 (104)
166 cd04981 IgV_H Immunoglobulin ( 93.0 0.32 7E-06 28.6 4.6 33 15-48 2-36 (117)
167 cd07694 Ig2_CD4 Second immunog 92.9 0.29 6.3E-06 28.6 4.2 31 23-53 11-43 (88)
168 cd05879 Ig_P0 Immunoglobulin ( 92.5 0.42 9.1E-06 28.5 4.7 29 19-47 6-38 (116)
169 cd05712 Ig_Siglec_N Immunoglob 92.3 0.36 7.9E-06 28.2 4.2 33 17-49 5-43 (119)
170 cd05721 IgV_CTLA-4 Immunoglobu 92.1 0.37 8E-06 29.3 4.1 33 15-48 3-38 (115)
171 cd05718 Ig1_PVR_like First imm 91.9 0.2 4.3E-06 27.7 2.6 23 28-50 2-27 (98)
172 cd05716 Ig_pIgR Immunoglobulin 91.8 0.34 7.5E-06 27.0 3.5 28 22-49 3-31 (98)
173 PHA03376 BARF1; Provisional 91.6 0.16 3.5E-06 34.0 2.3 30 23-52 136-165 (221)
174 KOG3515|consensus 91.4 0.21 4.6E-06 38.6 3.0 31 19-49 15-46 (741)
175 cd05900 Ig_Aggrecan Immunoglob 90.9 0.41 8.8E-06 28.4 3.4 23 26-48 2-36 (112)
176 cd05878 Ig_Aggrecan_like Immun 90.0 0.58 1.2E-05 27.3 3.5 24 26-49 2-35 (110)
177 smart00406 IGv Immunoglobulin 90.0 0.58 1.3E-05 24.4 3.2 21 29-49 2-24 (81)
178 cd05774 Ig_CEACAM_D1 First imm 89.6 0.81 1.8E-05 26.8 3.9 23 24-48 11-35 (105)
179 cd05890 Ig2_Nectin-1_like Seco 89.4 1 2.2E-05 26.9 4.2 23 29-51 23-47 (98)
180 cd05846 Ig1_MRC-OX-2_like Firs 88.4 0.96 2.1E-05 25.4 3.5 25 26-50 1-26 (97)
181 cd07692 Ig_CD3_epsilon Immunog 88.2 0.53 1.1E-05 26.1 2.3 25 21-49 3-27 (65)
182 cd05713 Ig_MOG_like Immunoglob 88.1 1.2 2.5E-05 24.8 3.7 25 26-50 1-28 (100)
183 cd07689 Ig2_VCAM-1 Second immu 87.7 1.1 2.5E-05 26.6 3.6 26 24-49 13-41 (99)
184 cd05896 Ig1_IL1RAPL-1_like Fir 86.8 1.7 3.7E-05 25.9 4.0 28 21-48 10-48 (104)
185 cd05902 Ig_Neurocan Immunoglob 84.1 1.7 3.7E-05 25.6 3.2 23 26-48 2-31 (110)
186 cd05775 Ig_SLAM-CD84_like_N N- 82.4 1.2 2.5E-05 25.2 1.9 24 25-48 3-27 (97)
187 KOG3515|consensus 82.0 1.3 2.8E-05 34.4 2.5 32 28-60 611-642 (741)
188 PHA03112 IL-18 binding protein 75.5 5 0.00011 25.3 3.4 27 25-51 37-66 (141)
189 PF11910 NdhO: Cyanobacterial 71.6 6.9 0.00015 21.8 2.9 40 6-49 23-62 (67)
190 cd05901 Ig_Versican Immunoglob 70.7 7.9 0.00017 23.4 3.3 23 26-48 2-35 (117)
191 PF06328 Lep_receptor_Ig: Ig-l 64.1 24 0.00051 20.1 4.3 36 16-53 9-49 (89)
192 cd07691 Ig_CD3_gamma_delta Imm 61.6 14 0.00031 20.6 3.0 21 28-54 8-28 (69)
193 PHA02865 MHC-like TNF binding 61.3 17 0.00037 25.9 4.0 21 28-48 216-238 (338)
194 cd05888 Ig1_Nectin-4_like Frst 60.9 13 0.00027 21.0 2.8 21 28-48 2-25 (100)
195 KOG4597|consensus 60.2 5.3 0.00011 30.1 1.3 25 23-47 208-232 (560)
196 KOG1026|consensus 58.4 8.1 0.00018 30.3 2.1 26 24-49 205-230 (774)
197 cd05886 Ig1_Nectin-1_like Firs 56.1 27 0.00059 20.0 3.7 20 28-48 2-26 (99)
198 PF01681 C6: C6 domain; Inter 49.8 17 0.00037 20.4 2.1 22 29-56 69-90 (92)
199 cd05889 Ig1_DNAM-1_like First 48.8 28 0.0006 20.0 2.9 23 28-50 2-25 (96)
200 PF08204 V-set_CD47: CD47 immu 48.2 18 0.00038 22.4 2.1 26 27-53 28-58 (130)
201 PF02124 Marek_A: Marek's dise 41.8 68 0.0015 21.5 4.2 41 8-51 74-116 (211)
202 PRK14051 negative regulator Gr 41.7 25 0.00054 21.6 2.0 23 23-45 80-102 (123)
203 cd05887 Ig1_Nectin-3_like Firs 39.2 54 0.0012 18.7 3.1 23 28-50 2-25 (96)
204 smart00089 PKD Repeats in poly 36.2 68 0.0015 16.7 4.2 28 25-52 13-41 (79)
205 cd00146 PKD polycystic kidney 33.6 77 0.0017 16.6 3.3 25 26-50 14-39 (81)
206 PF07449 HyaE: Hydrogenase-1 e 33.4 30 0.00066 20.6 1.5 21 39-60 82-102 (107)
207 TIGR02073 PBP_1c penicillin-bi 31.7 2E+02 0.0044 22.3 5.9 43 11-55 644-691 (727)
208 COG0048 RpsL Ribosomal protein 31.5 55 0.0012 20.4 2.4 40 20-60 60-100 (129)
209 PF03921 ICAM_N: Intercellular 29.6 57 0.0012 18.9 2.2 30 15-46 8-38 (91)
210 KOG1480|consensus 29.5 19 0.00041 28.8 0.1 42 12-55 131-173 (909)
211 PF04795 PAPA-1: PAPA-1-like c 28.0 93 0.002 17.7 2.8 18 37-54 63-81 (89)
212 PF12105 SpoU_methylas_C: SpoU 22.6 28 0.00062 18.7 0.0 23 31-56 33-55 (57)
213 PF09866 DUF2093: Uncharacteri 20.9 91 0.002 15.8 1.7 15 28-42 5-19 (42)
No 1
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.35 E-value=2.7e-12 Score=73.88 Aligned_cols=44 Identities=39% Similarity=0.957 Sum_probs=36.0
Q ss_pred cceEEEcCCCcEEec---CCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 10 GPIFIKEPPNRIDFS---NTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~---~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+|.|+++|.+.+ +. +|..++|.|.|.|+|.|+|+|++ ||.+|..
T Consensus 1 ~P~f~~~p~~~~-~~~~~~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~ 47 (94)
T cd05848 1 GPVFVQEPDDAI-FPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEIDT 47 (94)
T ss_pred CCeeEECCCcEE-ccCCCCCCEEEEEEEeeecCCCEEEEEE-CCeECcc
Confidence 589999976644 43 35669999999999999999998 8888754
No 2
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.31 E-value=9.5e-12 Score=71.46 Aligned_cols=46 Identities=30% Similarity=0.672 Sum_probs=36.7
Q ss_pred cceEEEcCCCcEEecCCC---CeEEEEEecccCCCeEEEEeCCCeeecCCC
Q psy11557 10 GPIFIKEPPNRIDFSNTT---GAQVECTARGSPNPEIIWIRSDGTAVGDVP 57 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~---~v~L~C~A~G~P~P~I~W~~~dg~~i~~~~ 57 (61)
+|.|+++|.+ +.+.+|. .++|+|.|.|+|.|+|+|++ ||..+...+
T Consensus 1 ~P~f~~~P~~-~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~ 49 (94)
T cd05850 1 GPVFEEQPSS-LLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIKFAP 49 (94)
T ss_pred CCeeEECCCC-EEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECccCC
Confidence 5899998544 5566653 59999999999999999998 888875433
No 3
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.26 E-value=2.1e-11 Score=68.30 Aligned_cols=44 Identities=27% Similarity=0.681 Sum_probs=37.4
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+|.|++.|. ++.+.+|+.++|.|.|.|+|.|.|+|++ ||..+..
T Consensus 1 ~P~i~~~p~-~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~ 44 (100)
T cd07693 1 PPRIVEHPS-DLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLET 44 (100)
T ss_pred CCeEEecCc-eeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECcc
Confidence 589999965 4567788899999999999999999998 7777654
No 4
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.24 E-value=3.1e-11 Score=69.60 Aligned_cols=43 Identities=26% Similarity=0.652 Sum_probs=34.3
Q ss_pred cceEEEcCCCcEEecCCC---CeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 10 GPIFIKEPPNRIDFSNTT---GAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~---~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+|+|+++|.+. .+.++. .++|.|.|.|+|.|+|+|++ ||..+.
T Consensus 1 ~P~f~~~P~~~-~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~ 46 (93)
T cd05849 1 GPVFEEQPIDT-IYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDID 46 (93)
T ss_pred CCEEEECCCCE-EecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEcc
Confidence 69999997654 454433 59999999999999999998 666663
No 5
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.21 E-value=3e-11 Score=68.51 Aligned_cols=41 Identities=37% Similarity=0.830 Sum_probs=34.0
Q ss_pred EEEcCCCcEEecCCCCeEEEEEecccCCC-eEEEEeCCCeeecC
Q psy11557 13 FIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGD 55 (61)
Q Consensus 13 f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P-~I~W~~~dg~~i~~ 55 (61)
|+++|. ++.+..|+.+.|+|.|.|+|.| +|+|++ ||.+|..
T Consensus 1 f~~~P~-~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~ 42 (81)
T cd05749 1 FTVEPE-DLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGD 42 (81)
T ss_pred CcCCCC-ceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCC
Confidence 566755 5667888899999999999999 799998 8887753
No 6
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.21 E-value=4.8e-11 Score=67.79 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=35.2
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
+|.|+..+.+.. ...|+.++|+|.|.|+|.|.|+|++ +|.++
T Consensus 1 ~p~i~~~~~~~~-~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~ 42 (88)
T cd05851 1 PADINVKFKDTY-ALKGQNVTLECFALGNPVPVIRWRK-ILEPM 42 (88)
T ss_pred CCceEEccccEE-EeCCCcEEEEEEecccCCCEEEEEE-CCcCC
Confidence 588999976654 6688899999999999999999999 55544
No 7
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.13 E-value=1.6e-10 Score=67.05 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=37.1
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 11 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 11 P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
|.|++.| +++.+..|..+.|.|.+.|.|+|+|+|++ ||.+|.+-
T Consensus 1 p~~~~~p-~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~ 44 (98)
T cd05762 1 PQIIQFP-EDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEG 44 (98)
T ss_pred CceEECC-cCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCC
Confidence 6788885 45567789899999999999999999998 88888643
No 8
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.11 E-value=4e-10 Score=63.83 Aligned_cols=44 Identities=36% Similarity=0.841 Sum_probs=35.0
Q ss_pred cceEEEcCCCcEEecCC---CCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 10 GPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g---~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+|+|+.+|.+ +.+..+ ..+.|.|.+.|+|.|+|+|++ ||..+..
T Consensus 1 ~P~f~~~p~~-~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~ 47 (91)
T cd04967 1 GPVFEEQPDD-TIFPEESDEGKVSLNCRARGSPPPTYRWLM-NGTEIDD 47 (91)
T ss_pred CCeeEeCCCC-EEccCCCCCCEEEEEEeeeEcCCCEEEEEE-CCEECCC
Confidence 5899999665 445443 349999999999999999998 7887743
No 9
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.10 E-value=2.6e-10 Score=64.80 Aligned_cols=43 Identities=21% Similarity=0.544 Sum_probs=37.1
Q ss_pred eEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 12 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 12 ~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.++...|..+.+.+|..+.|.|.+.|+|.|+|+|++ ||.++..
T Consensus 2 ~~~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~ 44 (92)
T cd05737 2 RVVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALAL 44 (92)
T ss_pred ceeccCCceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECcc
Confidence 466777888888899999999999999999999998 7777654
No 10
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.10 E-value=2.9e-10 Score=64.75 Aligned_cols=43 Identities=30% Similarity=0.597 Sum_probs=35.4
Q ss_pred eEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 12 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 12 ~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
.|+.+|.+. .+.+|+.+.|+|.|.|+|.|.|+|++ ||..|...
T Consensus 1 ~f~~~P~~~-~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~ 43 (95)
T cd05722 1 WFLSEPSDI-VAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLV 43 (95)
T ss_pred CcEECCCCe-EEcCCCCEEEeeecccCCCCEEEEEE-CCeECccc
Confidence 378887655 45678889999999999999999998 88887643
No 11
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.09 E-value=2.5e-10 Score=64.54 Aligned_cols=39 Identities=36% Similarity=0.571 Sum_probs=32.4
Q ss_pred EcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 15 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 15 ~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
.+|+++..+..|+.+.|.|.|.|+|.|+|+|++ ||..+.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~ 42 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVI 42 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEcc
Confidence 455666667889999999999999999999999 666553
No 12
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.07 E-value=4.5e-10 Score=62.35 Aligned_cols=43 Identities=26% Similarity=0.777 Sum_probs=38.0
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 11 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 11 P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
|.|+..| .++.+..|+.++|.|.++|.|.|+|+|++ ||..+..
T Consensus 1 P~~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~ 43 (90)
T PF07679_consen 1 PVFTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTS 43 (90)
T ss_dssp EEEEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEES
T ss_pred CEEEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceee
Confidence 7899996 66678889999999999999999999999 6888765
No 13
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.06 E-value=5.1e-10 Score=63.48 Aligned_cols=45 Identities=24% Similarity=0.666 Sum_probs=36.9
Q ss_pred CcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 9 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 9 ~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.+|.|+..|.+ +....|..+.|+|.+.|+|.|+|+|++ ||..+..
T Consensus 2 ~~~~~~~~p~~-~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~ 46 (92)
T cd05747 2 LPATILTKPRS-LTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVS 46 (92)
T ss_pred CCCcccccCcc-EEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCC
Confidence 47889988654 556778889999999999999999998 6766543
No 14
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.03 E-value=7.1e-10 Score=62.24 Aligned_cols=41 Identities=29% Similarity=0.555 Sum_probs=32.3
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCe
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 51 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~ 51 (61)
+|.|...|.+ +.+..|+.++|+|.|.|+|.|+|+|+++++.
T Consensus 1 p~~~~~~p~~-~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~ 41 (88)
T cd04968 1 PSIIVVFPKD-TYALKGQNVTLECFALGNPVPQIKWRKVDGS 41 (88)
T ss_pred CCcEEECCCc-eEEeCCCcEEEEEEeeEeCCCEEEEEECCCc
Confidence 3556666544 4566788899999999999999999995553
No 15
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.01 E-value=5.9e-10 Score=61.69 Aligned_cols=30 Identities=27% Similarity=0.699 Sum_probs=26.2
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
|+.++|.|.|.|+|+|+|+|++ ||.+|...
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~ 30 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLT-NGVPIEIA 30 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEE-CCEEcccc
Confidence 4679999999999999999998 88888543
No 16
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.01 E-value=7.3e-10 Score=62.26 Aligned_cols=42 Identities=21% Similarity=0.562 Sum_probs=34.2
Q ss_pred EEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 13 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 13 f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
|+..|.+ ..+..|+.++|.|.|.|.|.|.|+|++ ||.++...
T Consensus 2 ~~~~p~~-~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~ 43 (85)
T cd05728 2 WLKVISD-TEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASE 43 (85)
T ss_pred ccccCCc-cEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCC
Confidence 6677555 456788899999999999999999998 77777543
No 17
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.97 E-value=9.8e-10 Score=60.16 Aligned_cols=28 Identities=25% Similarity=0.694 Sum_probs=24.0
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
|+.++|.|.|.|+|.|+|+|++ +|.++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~ 28 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMK-GGEELT 28 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEE-CCEECC
Confidence 4569999999999999999998 666664
No 18
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.94 E-value=3e-09 Score=60.92 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=33.2
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
.|.|...| +......|..++|.|.|.|.|.|.|+|++ +|..+.
T Consensus 2 ~p~i~~~~-~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~ 44 (97)
T cd05869 2 KPKITYVE-NQTAMELEEQITLTCEASGDPIPSITWRT-STRNIS 44 (97)
T ss_pred CceEEEcc-CceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCcccc
Confidence 57777774 44445556789999999999999999998 665553
No 19
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.90 E-value=2.1e-09 Score=58.77 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=25.4
Q ss_pred CCCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 25 NTTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 25 ~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+|+.++|+|.|.|+|.|.|+|++ ||..+.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~ 29 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLS 29 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEE-CCEECC
Confidence 46779999999999999999998 777664
No 20
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.89 E-value=6.6e-09 Score=59.56 Aligned_cols=42 Identities=36% Similarity=0.646 Sum_probs=32.8
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeC-CCeee
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS-DGTAV 53 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~-dg~~i 53 (61)
+|.|+. +.+ +...+|+.++|.|.|.|+|.|.|+|++. +|..+
T Consensus 2 ~p~i~~-~~~-~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~ 44 (98)
T cd05870 2 QPHIIQ-LKN-ETTVENGAATLSCKAEGEPIPEITWKRASDGHTF 44 (98)
T ss_pred CCEEEe-ecc-EEEcCCCcEEEEEecccCCCCeEEEEECCCCcee
Confidence 577765 454 4567888999999999999999999986 34444
No 21
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.89 E-value=4.7e-09 Score=59.48 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=30.7
Q ss_pred CcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 19 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+.+.+..|+.+.|.|.+.|+|+|.|+|++ ||.++..
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~ 38 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTE 38 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECcc
Confidence 35566788899999999999999999998 7777754
No 22
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.86 E-value=7.1e-09 Score=58.73 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=32.9
Q ss_pred ceEEEcC-CCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 11 PIFIKEP-PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 11 P~f~~~P-p~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
|.|...+ ..++.+..|+.+.|.|.|.|.|.|.|+|++ ||..+..
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~ 46 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIES 46 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcC
Confidence 5454443 223456678889999999999999999998 7777643
No 23
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.86 E-value=5.3e-09 Score=57.45 Aligned_cols=29 Identities=28% Similarity=0.747 Sum_probs=25.4
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
|+.++|.|.|.|+|.|+|+|++ ||.++..
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~ 29 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSI-NGAPIEG 29 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEE-CCEECCC
Confidence 4569999999999999999998 8887754
No 24
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.84 E-value=7.3e-09 Score=61.02 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=34.9
Q ss_pred CcceEEEcCCCcEEec---CCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 9 LGPIFIKEPPNRIDFS---NTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 9 ~~P~f~~~Pp~~~~~~---~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.+|.|...|....+.. .|..++|.|.|.|+|.|.++|++ ||..|..
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~ 51 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAK-NGVPLDL 51 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEE-CCEECCC
Confidence 4788877765433333 34569999999999999999998 8887753
No 25
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.79 E-value=9.6e-09 Score=55.67 Aligned_cols=30 Identities=27% Similarity=0.755 Sum_probs=25.6
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
|+.++|.|.|.|+|.|+|+|++ ||..+...
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~ 30 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRL-NGVPIEEL 30 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEE-CCEECCCC
Confidence 4569999999999999999998 88777544
No 26
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.79 E-value=1.5e-08 Score=58.84 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=30.9
Q ss_pred EcCCCcEEecCCCCeEEEEEecccCC-CeEEEEeCCCeeec
Q psy11557 15 KEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVG 54 (61)
Q Consensus 15 ~~Pp~~~~~~~g~~v~L~C~A~G~P~-P~I~W~~~dg~~i~ 54 (61)
..|.+ .++..|..++|.|.|.|.|. |+|+|++.||..+.
T Consensus 5 ~~p~~-~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~ 44 (96)
T cd05865 5 IVPSQ-GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLT 44 (96)
T ss_pred EeCCc-cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcc
Confidence 34444 45778889999999999995 79999987887654
No 27
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.79 E-value=8.8e-09 Score=57.30 Aligned_cols=25 Identities=36% Similarity=0.912 Sum_probs=21.9
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+.|.|.|.|+|.|+|+|++ ||.++.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~ 25 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECC
Confidence 4799999999999999998 777763
No 28
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.78 E-value=3.6e-08 Score=56.50 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=32.6
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCC-eEEEEeCCCeeecC
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGD 55 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P-~I~W~~~dg~~i~~ 55 (61)
+|.+ ..+++. ....|..++|.|.|.|.|.| .|+|++ +|..|..
T Consensus 2 pp~i-~~~~~~-~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~ 45 (98)
T cd05758 2 PPII-TSEATQ-YAILGDKGRVECFIFSTPPPDRIVWTW-KENELES 45 (98)
T ss_pred CCeE-cCCCcE-EEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccC
Confidence 4555 444444 45678889999999999999 699998 7766643
No 29
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.76 E-value=1.6e-08 Score=55.88 Aligned_cols=33 Identities=21% Similarity=0.678 Sum_probs=28.1
Q ss_pred EecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 22 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 22 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.+..|..++|.|.|.|.|.|.|+|++ ||..+..
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~ 37 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQ 37 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCC
Confidence 35678889999999999999999998 7777643
No 30
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.76 E-value=1.6e-08 Score=59.36 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.3
Q ss_pred CcEEecCCCCeEEEEEecc-cCCCeEEEEeCCCeeecC
Q psy11557 19 NRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G-~P~P~I~W~~~dg~~i~~ 55 (61)
+.+.+..|+.+.|.|.+.| .|+|+|+|+| ||.+|..
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~ 47 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTN 47 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCC
Confidence 3556678889999999999 9999999998 8998864
No 31
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.76 E-value=1.2e-08 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.912 Sum_probs=22.2
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
++|.|.|.|+|.|+|+|++ ||.++.
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~ 25 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECC
Confidence 5799999999999999998 887764
No 32
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.75 E-value=1.5e-08 Score=55.52 Aligned_cols=25 Identities=44% Similarity=0.897 Sum_probs=22.3
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
++|.|.|.|+|.|+|+|++ ||.++.
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~ 25 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVD 25 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECc
Confidence 5899999999999999998 777765
No 33
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.74 E-value=1.6e-08 Score=55.08 Aligned_cols=25 Identities=32% Similarity=0.846 Sum_probs=21.8
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
++|.|.|.|.|.|+|+|++ ||..+.
T Consensus 2 v~l~C~~~G~P~p~v~W~k-~g~~~~ 26 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVK-NGDMVI 26 (71)
T ss_pred EEEEEEEEEeCCCEEEEEE-CCeECC
Confidence 7899999999999999998 665553
No 34
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.74 E-value=1.6e-08 Score=56.23 Aligned_cols=25 Identities=36% Similarity=0.872 Sum_probs=21.8
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+.|+|.|.|+|.|+|+|++ ||.++.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~~ 25 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFFN 25 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEcc
Confidence 4799999999999999998 777653
No 35
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.73 E-value=1.4e-08 Score=56.68 Aligned_cols=25 Identities=32% Similarity=0.769 Sum_probs=22.5
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+.|+|.+.|.|+|+|+|++ ||..|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~ 25 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQ 25 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECc
Confidence 5799999999999999999 777775
No 36
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.73 E-value=3.3e-08 Score=56.42 Aligned_cols=38 Identities=24% Similarity=0.640 Sum_probs=31.3
Q ss_pred CCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 17 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 17 Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.|..+.+.+|+.+.|.|.+.|+|.|.|.|++ +|..+..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k-~~~~~~~ 44 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFK-NDQDIEL 44 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEE-CCEECCC
Confidence 4566677889999999999999999999998 5555543
No 37
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.73 E-value=1.8e-08 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.886 Sum_probs=21.5
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
++|+|.|.|.|.|+|+|++ ||.++.
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~ 25 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLT 25 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECC
Confidence 5899999999999999999 665554
No 38
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.72 E-value=1.7e-08 Score=55.84 Aligned_cols=28 Identities=18% Similarity=0.544 Sum_probs=23.9
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
|..++|+|.+.|.|.|+|+|++ ||..+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~ 28 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSK-GTELLV 28 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEe-CCEecc
Confidence 4569999999999999999998 666654
No 39
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.71 E-value=3.3e-08 Score=55.75 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=31.3
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
.|.|. .+.+ ....+|+.++|.|.|.|+|.|.|+|++ +|..+
T Consensus 2 ~P~i~-~~~~-~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~ 42 (96)
T cd05732 2 QPKIT-YLEN-QTAVELEQITLTCEAEGDPIPEITWRR-ATRNF 42 (96)
T ss_pred Cccce-ecCc-eeEecCCcEEEEEEEeEcCCCcEEEEE-CCccc
Confidence 46665 3344 445678889999999999999999998 55444
No 40
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.70 E-value=4.9e-08 Score=53.84 Aligned_cols=37 Identities=30% Similarity=0.677 Sum_probs=30.4
Q ss_pred CCcEEecCCCCeEEEEEe-cccCCCeEEEEeCCCeeecC
Q psy11557 18 PNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 18 p~~~~~~~g~~v~L~C~A-~G~P~P~I~W~~~dg~~i~~ 55 (61)
|.++.+..|+.+.|.|.+ .|.|.|+|+|++ ||..+..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~ 40 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNL 40 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCC
Confidence 345567788899999999 799999999998 7776643
No 41
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.69 E-value=2.6e-08 Score=55.02 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=23.7
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
|..++|.|.|.|.|.|.|+|++ |+..+..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~ 29 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRL-NWGHVPD 29 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEE-CCeECCC
Confidence 4569999999999999999998 5555543
No 42
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.69 E-value=2.5e-08 Score=55.13 Aligned_cols=27 Identities=37% Similarity=0.854 Sum_probs=23.4
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
++|.|.|.|.|.|+|+|++ ||.++...
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~ 27 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSDG 27 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCCC
Confidence 5899999999999999998 78877543
No 43
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.69 E-value=2.7e-08 Score=56.41 Aligned_cols=23 Identities=17% Similarity=0.641 Sum_probs=21.0
Q ss_pred CCCeEEEEEecccCCCeEEEEeC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRS 48 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~ 48 (61)
|+.++|+|.|.|+|.|+|+|+++
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEe
Confidence 45699999999999999999985
No 44
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.68 E-value=2.2e-08 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=22.8
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+.|.|.+.|+|+|+|+|++ ||.+|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~ 25 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLIS 25 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECc
Confidence 4799999999999999998 888885
No 45
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.67 E-value=2.1e-08 Score=54.19 Aligned_cols=26 Identities=42% Similarity=1.012 Sum_probs=22.7
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.|.|+|.|.|+|++ ||..+..
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~~~ 26 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQVTE 26 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEECCC
Confidence 5799999999999999998 7877654
No 46
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.66 E-value=4.5e-08 Score=53.05 Aligned_cols=30 Identities=40% Similarity=0.894 Sum_probs=26.1
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
|..+.|.|.+.|.|.|.|+|+++||..+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~ 30 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISN 30 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecC
Confidence 456999999999999999999888887754
No 47
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.66 E-value=4.8e-08 Score=57.13 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=28.9
Q ss_pred EEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 21 IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 21 ~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.....+..+.|.|.+.|+|+|+|+|++ ||.+|.+
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~ 46 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIE 46 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcC
Confidence 345567789999999999999999998 8888754
No 48
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.66 E-value=4e-08 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.736 Sum_probs=22.3
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
++|+|.+.|.|.|+|+|++ ||..|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~ 25 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLT 25 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECC
Confidence 5799999999999999999 777775
No 49
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.64 E-value=6.9e-08 Score=55.78 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=31.7
Q ss_pred CCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 18 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 18 p~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
+.++....|+.+.|+|.|.|.|. .|+|+++||.++...
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~ 44 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS 44 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC
Confidence 45566778989999999999998 999999888877543
No 50
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.64 E-value=4.8e-08 Score=53.11 Aligned_cols=29 Identities=21% Similarity=0.607 Sum_probs=24.4
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
|+.++|.|.+.|.|.|+|+|++ ++..+..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~ 29 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSK-GTELLTN 29 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEE-CCEEccc
Confidence 4569999999999999999998 6666543
No 51
>KOG3513|consensus
Probab=98.63 E-value=4.5e-08 Score=75.77 Aligned_cols=46 Identities=24% Similarity=0.709 Sum_probs=39.9
Q ss_pred CcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 9 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 9 ~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
.+|.|++. +++..+..|+.++|.|.|.|.|.|+|+|++ ||.+|...
T Consensus 330 a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~ 375 (1051)
T KOG3513|consen 330 APPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPA 375 (1051)
T ss_pred cCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCcc
Confidence 57999998 556667889899999999999999999998 99988643
No 52
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.61 E-value=8.2e-08 Score=52.18 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=27.0
Q ss_pred EEecCCCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 21 IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 21 ~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+....|+.++|.|.+.|.|.|.|+|++ ||..+.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k-~~~~~~ 36 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLK-DNKPLT 36 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEE-CCcCCc
Confidence 344567889999999999999999998 666553
No 53
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.60 E-value=5.5e-08 Score=53.04 Aligned_cols=22 Identities=45% Similarity=1.102 Sum_probs=19.6
Q ss_pred eEEEEEecccCCCeEEEEeCCC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDG 50 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg 50 (61)
++|.|.|.|.|.|+|+|+++++
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~ 22 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGG 22 (75)
T ss_pred CEeEeecccccCCEEEEEeCCC
Confidence 5799999999999999999544
No 54
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.60 E-value=5.4e-08 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=23.0
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.+.|+|.|+|+|++ ||.+|..
T Consensus 1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~ 26 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYK-NGQLIVL 26 (70)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence 4799999999999999998 8888754
No 55
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.59 E-value=2e-07 Score=52.26 Aligned_cols=41 Identities=17% Similarity=0.426 Sum_probs=33.2
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEecccCC-CeEEEEeCCCeee
Q psy11557 11 PIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAV 53 (61)
Q Consensus 11 P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~-P~I~W~~~dg~~i 53 (61)
|++...|+... +.+|+.++|.|.|.|.|. +.++|++ ||..+
T Consensus 1 ~vv~~~P~~~~-v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l 42 (78)
T cd05752 1 AVVSLDPPWTT-IFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLL 42 (78)
T ss_pred CeEEeCCCCeE-eeCCCCEEEEEeCCCCCCCccEEEEE-CCEEe
Confidence 56777876654 457888999999999996 4799998 88876
No 56
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.58 E-value=1.7e-07 Score=53.72 Aligned_cols=41 Identities=17% Similarity=0.446 Sum_probs=31.0
Q ss_pred ceEEEc-CCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 11 PIFIKE-PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 11 P~f~~~-Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
|.+... .+.+..+.+|+.++|+|.|.|. .|.|+|++ ||..+
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l 43 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLL 43 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEEC
Confidence 556422 2334456788899999999999 99999998 66665
No 57
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.57 E-value=5.9e-08 Score=52.77 Aligned_cols=22 Identities=50% Similarity=0.995 Sum_probs=19.3
Q ss_pred eEEEEEecccCCCeEEEEeCCC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDG 50 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg 50 (61)
++|+|.|.|+|.|.|+|+++++
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~ 22 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDG 22 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCc
Confidence 4799999999999999999544
No 58
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.57 E-value=8.7e-08 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.694 Sum_probs=22.6
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.+.|.|.|+|+|++ ||..+..
T Consensus 2 ~~l~c~~~G~P~p~v~W~k-~g~~l~~ 27 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSK-DGKPLKL 27 (74)
T ss_pred EEEEeeEeeeCCCeEEEEE-CCEEcCC
Confidence 6899999999999999998 7777643
No 59
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.57 E-value=9.8e-08 Score=56.09 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=36.6
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEE-ecccCCCeEEEEeCCCeeec
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~-A~G~P~P~I~W~~~dg~~i~ 54 (61)
.|.|..+..+.+.+.+|.+++|.|. +.|.|.|+|.|++++...+.
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~ 47 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT 47 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc
Confidence 3677777778888899999999997 79999999999975444343
No 60
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.54 E-value=1.1e-07 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.699 Sum_probs=22.9
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.+.|.|+|+++|++ ||.+|.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~ 26 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISE 26 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence 4799999999999999998 8888754
No 61
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.54 E-value=1.4e-07 Score=53.24 Aligned_cols=23 Identities=17% Similarity=0.590 Sum_probs=20.8
Q ss_pred CCCeEEEEEecccCCCeEEEEeC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRS 48 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~ 48 (61)
|+.++|+|.|.|+|.|+|+|++.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 45699999999999999999984
No 62
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.52 E-value=1.2e-07 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.730 Sum_probs=23.1
Q ss_pred EEEEEecccCCCeEEEEeCCCeeecCCC
Q psy11557 30 QVECTARGSPNPEIIWIRSDGTAVGDVP 57 (61)
Q Consensus 30 ~L~C~A~G~P~P~I~W~~~dg~~i~~~~ 57 (61)
-|+|.+.|+|.|+|+|++ ||.+|....
T Consensus 2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~~ 28 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYH-NGAVLNESD 28 (81)
T ss_pred eEEEEeEeeCCCcEEEEE-CCEECcCCC
Confidence 379999999999999998 888886543
No 63
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.51 E-value=3.1e-07 Score=52.34 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=30.9
Q ss_pred EcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 15 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 15 ~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
..|.+ ..+..|+.+.|.|.|.|.| |.|+|++.||..+..
T Consensus 5 v~p~~-~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~ 43 (92)
T cd04977 5 IVPSQ-GEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVT 43 (92)
T ss_pred EecCc-EEECCCCeEEEEEEeEeeC-CeEEEECCCCCEecc
Confidence 44444 5677888999999999998 599999878876654
No 64
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.50 E-value=1.4e-07 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.708 Sum_probs=23.2
Q ss_pred EEEEEecccCCCeEEEEeCCCeeecCCC
Q psy11557 30 QVECTARGSPNPEIIWIRSDGTAVGDVP 57 (61)
Q Consensus 30 ~L~C~A~G~P~P~I~W~~~dg~~i~~~~ 57 (61)
-|.|.+.|+|+|+|+|++ ||.+|.+..
T Consensus 2 ~i~~~v~G~P~Pti~W~k-ng~~l~~~~ 28 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFH-EGAILNESE 28 (79)
T ss_pred eEEEEEeEeCCCceEEEE-CCEECCCCc
Confidence 478999999999999998 888886543
No 65
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.49 E-value=2e-07 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.862 Sum_probs=22.2
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.+.|.|.|.|+|++ +|..+..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~ 26 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLK-NGMDITP 26 (76)
T ss_pred CEeEeEeeecCCCEEEEEE-CCEECCC
Confidence 5799999999999999998 7776643
No 66
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.49 E-value=3.3e-07 Score=50.81 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=28.4
Q ss_pred cEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 20 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 20 ~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
...+..|+.++|.|.+.|. .|.|+|++ ||.+|...
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~ 37 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGEN 37 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCC
Confidence 3456788899999999996 68999998 88877543
No 67
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.49 E-value=1.5e-07 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.736 Sum_probs=22.7
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.+.|.|.|+|+|++ ||.++.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~ 26 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLK-DGLPAAE 26 (72)
T ss_pred CeEEeeEEEcCCCeEEEEE-CCEECCC
Confidence 4799999999999999998 7787754
No 68
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.48 E-value=1.2e-07 Score=52.22 Aligned_cols=23 Identities=39% Similarity=0.962 Sum_probs=20.3
Q ss_pred eEEEEEecccCCCeEEEEeCCCe
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGT 51 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~ 51 (61)
++|+|.|.|+|.|.|+|++.++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~ 23 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGR 23 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCc
Confidence 58999999999999999996553
No 69
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.47 E-value=6.6e-07 Score=49.74 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=30.7
Q ss_pred EEEcCCCcEEecCCCCeEEEEEecc-cCCCeEEEEeCC
Q psy11557 13 FIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSD 49 (61)
Q Consensus 13 f~~~Pp~~~~~~~g~~v~L~C~A~G-~P~P~I~W~~~d 49 (61)
++.++|..+.+..|+.++|.|.+.| .|.|.|.|++.+
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~ 40 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVG 40 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECC
Confidence 4556677777888999999999985 799999999854
No 70
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.47 E-value=2.7e-07 Score=52.34 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=24.3
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
|+.++|.|.|.|.|+|.|+|++ ||..+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~ 28 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEK-EDRIIN 28 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEee-CCEECC
Confidence 4569999999999999999998 777664
No 71
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.45 E-value=2.3e-07 Score=49.48 Aligned_cols=22 Identities=50% Similarity=1.031 Sum_probs=19.5
Q ss_pred eEEEEEecccCCCeEEEEeCCC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDG 50 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg 50 (61)
++|+|.|.|.|.|.|+|+++++
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~ 22 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGG 22 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCe
Confidence 4799999999999999999544
No 72
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.45 E-value=4.6e-07 Score=52.58 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=27.1
Q ss_pred cEEecCCCCeEEEEEecccCCCeEEEEeCCCe
Q psy11557 20 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 51 (61)
Q Consensus 20 ~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~ 51 (61)
++.+..|+.+.|+|.|.|.|.|.|.|++.++.
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~ 37 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQ 37 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCcc
Confidence 45567788999999999999999999986543
No 73
>KOG4222|consensus
Probab=98.42 E-value=2e-07 Score=72.85 Aligned_cols=53 Identities=30% Similarity=0.617 Sum_probs=41.5
Q ss_pred ccCCCCcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCC-eeecCCCC
Q psy11557 4 AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG-TAVGDVPG 58 (61)
Q Consensus 4 ~~~~~~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg-~~i~~~~~ 58 (61)
+.....+|+++.-| .+..++.+..++|+|.|+|+|+|+|+|++ || ......++
T Consensus 25 ~r~qd~~p~iiehp-~d~vvs~~~patlnc~asG~ppPti~w~k-~G~~~~~~e~~ 78 (1281)
T KOG4222|consen 25 LRAQDQPPRIIEHP-HDLVVSKGEPATLNCKASGDPPPTIEWYK-DGENVFKGEPG 78 (1281)
T ss_pred cccccCCCceEecc-hhhhccCCCCceeecCCCCCCCCceeccc-CCcccCCCCCC
Confidence 44556789999995 55567888899999999999999999998 77 44444444
No 74
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.42 E-value=3.1e-07 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.763 Sum_probs=21.8
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDG 50 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg 50 (61)
|+.++|.|.|.|+|.|+|.|+++++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~ 25 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGS 25 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCC
Confidence 4569999999999999999998544
No 75
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.40 E-value=3.1e-07 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.999 Sum_probs=19.5
Q ss_pred eEEEEEecccCCCeEEEEeCCC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDG 50 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg 50 (61)
++|.|.+.|+|.|.|+|+++++
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~ 22 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDG 22 (69)
T ss_pred CEEEEECccCCCCEEEEEECCc
Confidence 5799999999999999999543
No 76
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.38 E-value=8.8e-07 Score=51.05 Aligned_cols=33 Identities=12% Similarity=0.332 Sum_probs=27.7
Q ss_pred CcEEecCCCCeEEEEEecccCCCeEEEEeCCCe
Q psy11557 19 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 51 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~ 51 (61)
+++.+.+|..+.|+|.+.|.|.|.|.|++.++.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~ 37 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQ 37 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCe
Confidence 456678899999999999999999999864443
No 77
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.36 E-value=4.9e-07 Score=49.27 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=21.0
Q ss_pred CCCeEEEEEecccCCCeEEEEeC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRS 48 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~ 48 (61)
|+.++|.|.+.|.|.|+|+|++.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~ 23 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQ 23 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEec
Confidence 45799999999999999999985
No 78
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.35 E-value=1.1e-06 Score=49.65 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=22.9
Q ss_pred CeEEEEEecccCCC--eEEEEeCCCeeecC
Q psy11557 28 GAQVECTARGSPNP--EIIWIRSDGTAVGD 55 (61)
Q Consensus 28 ~v~L~C~A~G~P~P--~I~W~~~dg~~i~~ 55 (61)
.++|.|.|.|+|.| +|+|++ ||.+|..
T Consensus 2 ~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~ 30 (85)
T cd05854 2 NLTLQCHASHDPTMDLTFTWSL-DDFPIDL 30 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEE-CCeEccc
Confidence 48999999999998 589998 8887743
No 79
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.34 E-value=7.2e-07 Score=47.96 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=22.3
Q ss_pred eEEEEEecc-cCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARG-SPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G-~P~P~I~W~~~dg~~i~~ 55 (61)
.+|.|.|.| +|.|+++|++ ||..+..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~ 27 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNR 27 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccc
Confidence 379999999 9999999998 7777653
No 80
>KOG3513|consensus
Probab=98.34 E-value=6.5e-07 Score=69.54 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=43.3
Q ss_pred ccCCCCcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 4 AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 4 ~~~~~~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
..+...+|.|...++.++....|+.+.|+|-|.|+|.|+|.|.|.||.++.
T Consensus 234 ~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~ 284 (1051)
T KOG3513|consen 234 NVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP 284 (1051)
T ss_pred ccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC
Confidence 345567888988888777777898999999999999999999999997654
No 81
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.32 E-value=1.8e-06 Score=49.77 Aligned_cols=36 Identities=17% Similarity=0.448 Sum_probs=29.0
Q ss_pred CcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 19 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
.+..+..|+.+.|.|.+.+ |.|+|+|++ ||.+|...
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~ 39 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPE 39 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCC
Confidence 3445677889999999875 889999998 88887643
No 82
>KOG4194|consensus
Probab=98.29 E-value=5e-07 Score=68.00 Aligned_cols=44 Identities=36% Similarity=0.758 Sum_probs=37.1
Q ss_pred CCcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCee
Q psy11557 8 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 8 ~~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~ 52 (61)
...|.|+++| .++....|.-+.|.|.|+|.|.|+|.|-|++|..
T Consensus 610 ~~~PsFtktP-~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 610 NQAPSFTKTP-EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred eccCccccCc-ccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 3579999995 5556777888999999999999999999976663
No 83
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.28 E-value=2.3e-06 Score=46.41 Aligned_cols=32 Identities=28% Similarity=0.774 Sum_probs=26.5
Q ss_pred EecCCCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 22 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 22 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
....|..++|.|.+.|.|.|.|+|++ +|..+.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~ 36 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLK-DGKPFK 36 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEE-CCEECc
Confidence 34567789999999999999999998 666553
No 84
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.27 E-value=2e-06 Score=48.18 Aligned_cols=34 Identities=12% Similarity=0.448 Sum_probs=27.3
Q ss_pred CCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 18 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 18 p~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
+..+.+..|..++|+|.+.| |.|+|+|++ +|..+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k-~~~~~ 36 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLF-QGGPL 36 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEE-CCccc
Confidence 44555677888999999998 999999998 55444
No 85
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.25 E-value=2e-06 Score=47.86 Aligned_cols=26 Identities=19% Similarity=0.555 Sum_probs=22.4
Q ss_pred CeEEEEEecccCCC--eEEEEeCCCeeec
Q psy11557 28 GAQVECTARGSPNP--EIIWIRSDGTAVG 54 (61)
Q Consensus 28 ~v~L~C~A~G~P~P--~I~W~~~dg~~i~ 54 (61)
.++|.|.|.|+|.| +++|++ ||.+|.
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~-~g~~i~ 29 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSF-NGVPID 29 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEE-CCeEee
Confidence 58999999999999 669998 888764
No 86
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.22 E-value=4.7e-06 Score=44.40 Aligned_cols=41 Identities=20% Similarity=0.719 Sum_probs=31.4
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
.|++...+ .. +..|..++|.|.+.|.|.+.+.|++ ++..+.
T Consensus 1 kP~l~~~~-~~--v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~ 41 (80)
T PF13895_consen 1 KPVLSSSP-QS--VEEGDSVTLTCSVSGNPPPQVQWYK-NGSPIN 41 (80)
T ss_dssp --EEEEES-SE--EETTSEEEEEEEEESSSSSEEEEEE-TTEEEE
T ss_pred CcEEEccc-eE--EeCCCcEEEEEEEEcccceeeeeee-eeeeee
Confidence 36677664 33 4568889999999999999999998 677665
No 87
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.14 E-value=4.5e-06 Score=46.14 Aligned_cols=25 Identities=48% Similarity=1.034 Sum_probs=21.8
Q ss_pred eEEEEEecc-cCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARG-SPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G-~P~P~I~W~~~dg~~i~ 54 (61)
+.|.|.|.| +|.|.|+|++ ||.++.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~ 27 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLD 27 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEcc
Confidence 689999998 7999999998 787764
No 88
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.10 E-value=1e-05 Score=45.76 Aligned_cols=34 Identities=12% Similarity=0.398 Sum_probs=27.9
Q ss_pred CcEEecCCCCeEEEEEecccCCCeEEEEeCCCee
Q psy11557 19 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~ 52 (61)
.++.+.+|+.++|.|.+.|.|.|.+.|++.++..
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~ 38 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQT 38 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcE
Confidence 3456778999999999999999999998755543
No 89
>KOG4221|consensus
Probab=98.08 E-value=5.6e-06 Score=65.40 Aligned_cols=42 Identities=29% Similarity=0.779 Sum_probs=35.4
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
.-+|+.+|...+ ...|.+++|+|.|+|.|+|+|+|++ ||..|
T Consensus 237 ~~~fl~~p~~~~-v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i 278 (1381)
T KOG4221|consen 237 KLVFLDEPSNAV-VVEGDDVVLECVVSGVPKPSVKWLR-NGEKI 278 (1381)
T ss_pred ceeeecCCCccc-cccCCcEEEEEEecCCCCCceEEee-CCeee
Confidence 346999976665 5568889999999999999999999 88876
No 90
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.05 E-value=5e-06 Score=47.93 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=25.1
Q ss_pred EecCCCCeEEEEEecc-----cCCCeEEEEeCCCee
Q psy11557 22 DFSNTTGAQVECTARG-----SPNPEIIWIRSDGTA 52 (61)
Q Consensus 22 ~~~~g~~v~L~C~A~G-----~P~P~I~W~~~dg~~ 52 (61)
...+|+.+.|.|.+.| +|.|.|+|+++ |..
T Consensus 10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~ 44 (94)
T cd05756 10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGK 44 (94)
T ss_pred EEecCCCeEEECCCCCcccccCCCceEEEEEc-CCC
Confidence 3457889999999999 79999999994 444
No 91
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.02 E-value=1.7e-05 Score=54.26 Aligned_cols=39 Identities=18% Similarity=0.438 Sum_probs=31.1
Q ss_pred EEcCCCcEEecCCCCeEEEEEecccCCC---eEEEEeCCCeeec
Q psy11557 14 IKEPPNRIDFSNTTGAQVECTARGSPNP---EIIWIRSDGTAVG 54 (61)
Q Consensus 14 ~~~Pp~~~~~~~g~~v~L~C~A~G~P~P---~I~W~~~dg~~i~ 54 (61)
+..| ..+....|+.++|.|.|.|.|.| .|.|++ ||..|.
T Consensus 224 ~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~ 265 (326)
T PHA02785 224 MQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYE 265 (326)
T ss_pred ecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECC
Confidence 3454 55566778889999999999974 899998 888774
No 92
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.01 E-value=1.2e-05 Score=40.29 Aligned_cols=28 Identities=32% Similarity=0.851 Sum_probs=23.6
Q ss_pred CCCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
|..+.|.|.+.|.|.+.+.|++ +|..+.
T Consensus 2 g~~~~l~C~~~~~~~~~v~W~~-~~~~~~ 29 (63)
T smart00408 2 GQSVTLTCPAEGDPVPNITWLK-DGKPLP 29 (63)
T ss_pred CceEEEEeeCccCCCCeEEEEE-CCEECC
Confidence 5679999999999999999998 565543
No 93
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.96 E-value=2.1e-05 Score=51.92 Aligned_cols=36 Identities=14% Similarity=0.352 Sum_probs=28.4
Q ss_pred CcEEecCCCCeEEEEEec-----ccCCCeEEEEeCCCeeecC
Q psy11557 19 NRIDFSNTTGAQVECTAR-----GSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~-----G~P~P~I~W~~~dg~~i~~ 55 (61)
....+.+|+.+.|+|.|. |.|.|+|+|++ ||.+|..
T Consensus 137 ~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~ 177 (227)
T PHA02826 137 INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLY 177 (227)
T ss_pred ccceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCEECCC
Confidence 344566788899999997 45789999998 8887753
No 94
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.92 E-value=1.5e-05 Score=46.89 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=31.1
Q ss_pred EEEcCCCcEEecCCCCeEEEE-EecccCCCeEEEEeCCCee
Q psy11557 13 FIKEPPNRIDFSNTTGAQVEC-TARGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 13 f~~~Pp~~~~~~~g~~v~L~C-~A~G~P~P~I~W~~~dg~~ 52 (61)
|..++.+.+.+.+|++++|.| .-.|.|.|.|+|++ |+.+
T Consensus 5 f~~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k-~~~~ 44 (96)
T cd05727 5 FPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLL-NEFP 44 (96)
T ss_pred cCcCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEE-CCcc
Confidence 555666667778899999999 55699999999998 5554
No 95
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.89 E-value=2.3e-05 Score=44.75 Aligned_cols=26 Identities=19% Similarity=0.579 Sum_probs=22.6
Q ss_pred eEEEEEec-ccCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTAR-GSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~-G~P~P~I~W~~~dg~~i~~ 55 (61)
+.|+|.+. |+|.++|+|++ ||.+|..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~ 28 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELKG 28 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECCC
Confidence 68999987 78999999998 8888754
No 96
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.88 E-value=1.5e-05 Score=44.15 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.8
Q ss_pred CCCeEEEEEeccc--CCCeEEEEeCC
Q psy11557 26 TTGAQVECTARGS--PNPEIIWIRSD 49 (61)
Q Consensus 26 g~~v~L~C~A~G~--P~P~I~W~~~d 49 (61)
|+.++|.|.|.|. |.|.|+|.+++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~ 26 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPG 26 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCC
Confidence 4569999999999 89999998743
No 97
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.83 E-value=3.6e-05 Score=42.99 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=24.6
Q ss_pred CCCCeEEEEEeccc-CC-CeEEEEeCCCeeecC
Q psy11557 25 NTTGAQVECTARGS-PN-PEIIWIRSDGTAVGD 55 (61)
Q Consensus 25 ~g~~v~L~C~A~G~-P~-P~I~W~~~dg~~i~~ 55 (61)
.|..+.|.|.|.|. |. ..|+|++ ||..+..
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~ 43 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLK-NGKELTS 43 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEE-CCEECCC
Confidence 46679999999998 64 6899998 8887653
No 98
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.83 E-value=3.7e-05 Score=42.94 Aligned_cols=26 Identities=27% Similarity=0.709 Sum_probs=21.8
Q ss_pred eEEEEEeccc-CCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARGS-PNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G~-P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.|.|. |.+.|+|++ ||..+.+
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~ 28 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELKG 28 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEccC
Confidence 6899999875 999999998 7777653
No 99
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.82 E-value=8.2e-05 Score=38.81 Aligned_cols=34 Identities=24% Similarity=0.683 Sum_probs=27.9
Q ss_pred cEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 20 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 20 ~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
.+....|..+.|.|.+.+.+.+.+.|++.++..+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v 36 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL 36 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence 3445678889999999999999999998646655
No 100
>smart00409 IG Immunoglobulin.
Probab=97.82 E-value=8.2e-05 Score=38.81 Aligned_cols=34 Identities=24% Similarity=0.683 Sum_probs=27.9
Q ss_pred cEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 20 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 20 ~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
.+....|..+.|.|.+.+.+.+.+.|++.++..+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v 36 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL 36 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence 3445678889999999999999999998646655
No 101
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.82 E-value=5.6e-05 Score=43.95 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=24.9
Q ss_pred EecCCCCeEEEEEecccCCCeEEEEeCCCe
Q psy11557 22 DFSNTTGAQVECTARGSPNPEIIWIRSDGT 51 (61)
Q Consensus 22 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~ 51 (61)
....|+.|+|.|.++|.|.+.|.|++++..
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k 32 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQI 32 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence 345688899999999999999999975433
No 102
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.80 E-value=3.8e-05 Score=43.07 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.2
Q ss_pred CCCeEEEEEecccCCCeEEEEeCC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
|+.++|.|.|.|+|.|.|+|.+.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~ 24 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPG 24 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECC
Confidence 567999999999999999999744
No 103
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.78 E-value=3.9e-05 Score=41.66 Aligned_cols=25 Identities=20% Similarity=0.667 Sum_probs=20.9
Q ss_pred eEEEEEecc-cCCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARG-SPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G-~P~P~I~W~~~dg~~i~ 54 (61)
+.|.|.|.| .|.|.|+|++ ||..|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~ 26 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIG 26 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCcccc
Confidence 479999985 7899999998 787774
No 104
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.78 E-value=4.2e-05 Score=43.81 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.6
Q ss_pred CeEEEEEecc--cCCCeEEEEeCCCeeec
Q psy11557 28 GAQVECTARG--SPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 28 ~v~L~C~A~G--~P~P~I~W~~~dg~~i~ 54 (61)
+++|.|.|.+ ++.++|+|++ ||.+|.
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~-dg~~i~ 29 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSF-NGHLID 29 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEE-CCEECc
Confidence 5899999988 4599999998 888885
No 105
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.78 E-value=4.6e-05 Score=42.96 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=21.6
Q ss_pred eEEEEEeccc-CCCeEEEEeCCCeeec
Q psy11557 29 AQVECTARGS-PNPEIIWIRSDGTAVG 54 (61)
Q Consensus 29 v~L~C~A~G~-P~P~I~W~~~dg~~i~ 54 (61)
+.|.|.|.|. |.+.|+|++ ||..+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~ 27 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELE 27 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECC
Confidence 6899999986 999999998 777664
No 106
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.72 E-value=0.00015 Score=42.63 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=29.9
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCe-EEEEeCCCeeec
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVG 54 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~-I~W~~~dg~~i~ 54 (61)
+|.+..+ .......|+.+.|.|.|.+.|+|. |.|.. ++..|.
T Consensus 2 pP~i~~~--~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~ 44 (98)
T cd05898 2 PPIISSE--QVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLE 44 (98)
T ss_pred CCEEecC--ceEEEeCCCcEEEEEEEccCCCCcEEEEEE-cccccc
Confidence 5666444 333456788999999999999885 68876 445553
No 107
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.69 E-value=8.1e-05 Score=42.11 Aligned_cols=26 Identities=27% Similarity=0.786 Sum_probs=22.1
Q ss_pred eEEEEEecc-cCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARG-SPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G-~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.|.| +|...|+|++ ||..+.+
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECcC
Confidence 689999998 8899999998 7877643
No 108
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.64 E-value=0.00018 Score=40.33 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=28.4
Q ss_pred EEEcCCCcEEecCCCCeEEEEEec-ccCCCeEEEEeCCCeeec
Q psy11557 13 FIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 13 f~~~Pp~~~~~~~g~~v~L~C~A~-G~P~P~I~W~~~dg~~i~ 54 (61)
|++. +..+ +.+|+.++|.|.+. |.|.+.+.|++ ||..+.
T Consensus 3 ~l~~-p~~~-V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~ 42 (83)
T cd05753 3 LLQV-PSRV-VFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKK 42 (83)
T ss_pred EEEC-Ccce-ecCCCCEEEEeeCCCCCcceEEEEEE-CCeEcc
Confidence 3444 4544 45788899999996 57788999998 666553
No 109
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.57 E-value=0.00016 Score=43.63 Aligned_cols=44 Identities=27% Similarity=0.539 Sum_probs=30.3
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecc-cCCC-eEEEEeCCCeeec
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG 54 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dg~~i~ 54 (61)
+|....-||....+..+..++|.|.|.| +|.. +|+|++ ||..+.
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~ 47 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKV-NGKEVT 47 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEE-CCEECC
Confidence 3544444566555545556999999999 5664 789998 777654
No 110
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.56 E-value=0.00036 Score=41.96 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=27.4
Q ss_pred CcceEEEcCCCcEEecCCCCeEEEEEeccc-CC-CeEEEEeCC
Q psy11557 9 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSD 49 (61)
Q Consensus 9 ~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~-P~-P~I~W~~~d 49 (61)
.+|.+...+... ....|..++|.|.|.|. |. ++|+|++++
T Consensus 37 ~~P~v~~~~~~~-~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g 78 (139)
T cd05771 37 EPPRVRLSLEKL-VSMIEEPQTLICHIAGYYPLDVQVEWTREP 78 (139)
T ss_pred cCCceEEeCCCc-eeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence 356665554433 33356679999999996 54 489999943
No 111
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.55 E-value=9.1e-05 Score=38.64 Aligned_cols=35 Identities=31% Similarity=0.692 Sum_probs=27.6
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccC-CCeEEEE
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWI 46 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P-~P~I~W~ 46 (61)
+|.+...+...+ ...+. +.|.|.|.|.| .+.++|+
T Consensus 1 kP~I~~~~~~~~-~~~~~-~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 1 KPQISVPPPPVV-TSGGS-VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp ESEEEEESTSEE-ETTEE-EEEEEEESSEESSEEEEEE
T ss_pred CCEEEEcCCCcE-eecee-EEEEEEEccccCCeEEEEE
Confidence 477788866654 33343 99999999999 9999999
No 112
>KOG4222|consensus
Probab=97.51 E-value=9.9e-05 Score=58.33 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=37.9
Q ss_pred CCcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 8 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 8 ~~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
..+|.|...|.++.++.++ .++|+|.+.|+|+|.|.|+++++..+
T Consensus 313 ~apP~f~kkp~dq~v~lg~-~vt~pc~~~gnP~PavfW~keg~q~l 357 (1281)
T KOG4222|consen 313 QAPPSFGKKPRDQKVALGG-TVTFPCETLGNPPPAVFWLKEGSQDL 357 (1281)
T ss_pred ecCcccccccCccccccCc-eEEeeeecCCCCCcceEEeccCccee
Confidence 3578999998888766544 69999999999999999999877655
No 113
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.50 E-value=0.00023 Score=39.58 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=20.3
Q ss_pred CCCeEEEE-EecccCCCeEEEEeCCCee
Q psy11557 26 TTGAQVEC-TARGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 26 g~~v~L~C-~A~G~P~P~I~W~~~dg~~ 52 (61)
+..+.|.| ...|+|.|.|+|+.+++..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 45799999 5568999999999855443
No 114
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.50 E-value=0.00015 Score=37.75 Aligned_cols=27 Identities=15% Similarity=0.582 Sum_probs=22.9
Q ss_pred CCCeEEEEEe-cccCCCeEEEEeCCCee
Q psy11557 26 TTGAQVECTA-RGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 26 g~~v~L~C~A-~G~P~P~I~W~~~dg~~ 52 (61)
|+.+.|.|.+ .+.|.+.++|.++++..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~ 28 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSL 28 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTT
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccc
Confidence 5679999999 89999999999966543
No 115
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.48 E-value=0.00039 Score=39.54 Aligned_cols=25 Identities=36% Similarity=0.846 Sum_probs=20.1
Q ss_pred CCCeEEEEEeccc-CCC-eEEEEeCCCe
Q psy11557 26 TTGAQVECTARGS-PNP-EIIWIRSDGT 51 (61)
Q Consensus 26 g~~v~L~C~A~G~-P~P-~I~W~~~dg~ 51 (61)
+..++|.|.|.|. |++ .|+|++ ||.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~ 40 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLR-DGE 40 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEE-CCE
Confidence 4569999999995 655 899998 664
No 116
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.45 E-value=0.00035 Score=41.65 Aligned_cols=30 Identities=23% Similarity=0.692 Sum_probs=23.9
Q ss_pred cCCCCeEEEEEecc-cCC-CeEEEEeCCCeeec
Q psy11557 24 SNTTGAQVECTARG-SPN-PEIIWIRSDGTAVG 54 (61)
Q Consensus 24 ~~g~~v~L~C~A~G-~P~-P~I~W~~~dg~~i~ 54 (61)
..|..++|.|.|.| +|. -+|+|++ ||..+.
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~ 50 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLK-NGNELS 50 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECc
Confidence 34556999999999 564 5899998 888765
No 117
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.45 E-value=0.00025 Score=40.52 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=22.4
Q ss_pred EEecCCCCeEEEEEecccCCCeEEEEeC
Q psy11557 21 IDFSNTTGAQVECTARGSPNPEIIWIRS 48 (61)
Q Consensus 21 ~~~~~g~~v~L~C~A~G~P~P~I~W~~~ 48 (61)
+...+|+.++|+|.+ +.|.|.|+|++.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence 345578889999997 699999999983
No 118
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.43 E-value=0.0004 Score=39.66 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=28.3
Q ss_pred cCCCcEEecCCCCeEEEEEecccCCCeEEEEeC
Q psy11557 16 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS 48 (61)
Q Consensus 16 ~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~ 48 (61)
+++..+....|..+.|.|.+.+.+.+.+.|++.
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~ 35 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ 35 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence 345666778899999999999999999999985
No 119
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.42 E-value=0.00039 Score=40.24 Aligned_cols=33 Identities=15% Similarity=0.440 Sum_probs=27.2
Q ss_pred EcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCC
Q psy11557 15 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 15 ~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
+. |..+.+.+|+.++|.|.+.+ +.+.|.|++.+
T Consensus 3 Q~-p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~ 35 (110)
T cd05899 3 QS-PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD 35 (110)
T ss_pred EC-CCceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence 44 45556788999999999999 88999999853
No 120
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.40 E-value=0.00068 Score=39.09 Aligned_cols=29 Identities=17% Similarity=0.453 Sum_probs=23.6
Q ss_pred CCCCeEEEEEecc-cCCC-eEEEEeCCCeeec
Q psy11557 25 NTTGAQVECTARG-SPNP-EIIWIRSDGTAVG 54 (61)
Q Consensus 25 ~g~~v~L~C~A~G-~P~P-~I~W~~~dg~~i~ 54 (61)
.+..++|.|.|.| +|.. +|+|++ ||+.+.
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~ 43 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFK-NGQEET 43 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEE-CCeecC
Confidence 3567999999999 7766 789998 887754
No 121
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.40 E-value=0.0002 Score=41.23 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=25.6
Q ss_pred ecCCCCeEEEEEeccc-----CCCeEEEEeCCCeeecC
Q psy11557 23 FSNTTGAQVECTARGS-----PNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~-----P~P~I~W~~~dg~~i~~ 55 (61)
...|+.++|.|.+.+. |.|.|+|++ ||.+|..
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~ 43 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEG 43 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCC
Confidence 3457789999998763 688999998 8888754
No 122
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.40 E-value=0.00024 Score=41.63 Aligned_cols=40 Identities=23% Similarity=0.606 Sum_probs=26.8
Q ss_pred EEEcCCCcEEecCCCCeEEEEEecc-cCCC-eEEEEeCCCeeec
Q psy11557 13 FIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG 54 (61)
Q Consensus 13 f~~~Pp~~~~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dg~~i~ 54 (61)
++..| ....+..+..++|.|.|+| +|+. .|+|++ ||..+.
T Consensus 4 ~l~~p-~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~ 45 (102)
T cd05768 4 YVLPP-PSEELSLQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS 45 (102)
T ss_pred EEeCc-ChHHhCcCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence 34443 3333444567999999999 5544 469998 777664
No 123
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.39 E-value=0.00034 Score=40.66 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=29.2
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEecc-cC-CCeEEEEeCCCeeec
Q psy11557 11 PIFIKEPPNRIDFSNTTGAQVECTARG-SP-NPEIIWIRSDGTAVG 54 (61)
Q Consensus 11 P~f~~~Pp~~~~~~~g~~v~L~C~A~G-~P-~P~I~W~~~dg~~i~ 54 (61)
|....-|+.......+..++|.|.|.| +| .-+|+|++ ||+.+.
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~ 46 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKV-DGATVS 46 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence 433344444433434556999999999 67 56789998 888764
No 124
>KOG4221|consensus
Probab=97.37 E-value=0.00012 Score=58.19 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=38.2
Q ss_pred CCCcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 7 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 7 ~~~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
...+|.|+..|...+.. ++..+.|.|.++|.|.|+|+|++ ||..+..
T Consensus 325 V~a~P~~~~~p~~l~A~-e~~die~ec~~~g~p~p~v~w~k-Ngd~~ip 371 (1381)
T KOG4221|consen 325 VLAPPGFTKAPTTLVAH-ESMDIEFECPVSGKPIPTVRWYK-NGDRIIP 371 (1381)
T ss_pred EEcCCCCCCCCcceeee-eccceeEeCCCCCCCcceEEEEe-cCcccCc
Confidence 34579999997766654 57779999999999999999998 7776543
No 125
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.33 E-value=0.00073 Score=38.84 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=27.9
Q ss_pred EEEcCCCcEEecCCCCeEEEEEecccC-CCeEEEEeC
Q psy11557 13 FIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRS 48 (61)
Q Consensus 13 f~~~Pp~~~~~~~g~~v~L~C~A~G~P-~P~I~W~~~ 48 (61)
+.+.| ..+.+.+|+.++|.|.+.+.. ...+.|++.
T Consensus 3 v~Q~p-~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 3 LTQSP-ATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred EEECC-CcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 34554 445678899999999999887 788999975
No 126
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.33 E-value=0.00043 Score=39.66 Aligned_cols=26 Identities=23% Similarity=0.607 Sum_probs=21.4
Q ss_pred eEEEEEecc-cCCCeEEEEeCCCeeecC
Q psy11557 29 AQVECTARG-SPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 29 v~L~C~A~G-~P~P~I~W~~~dg~~i~~ 55 (61)
+.|.|.+.| .|.+.|+|++ +|..+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~ 28 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELTG 28 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECcC
Confidence 689999986 5899999998 7777643
No 127
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.19 E-value=0.00073 Score=37.01 Aligned_cols=24 Identities=33% Similarity=0.786 Sum_probs=20.0
Q ss_pred eEEEEEeccc-CC-CeEEEEeCCCeee
Q psy11557 29 AQVECTARGS-PN-PEIIWIRSDGTAV 53 (61)
Q Consensus 29 v~L~C~A~G~-P~-P~I~W~~~dg~~i 53 (61)
++|.|.|.|. |+ ..|+|++ ||+++
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEEC
Confidence 6899999996 55 6899998 88763
No 128
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.19 E-value=0.0016 Score=38.56 Aligned_cols=31 Identities=13% Similarity=0.426 Sum_probs=24.9
Q ss_pred ecCCCCeEEEEEecc-cCCCe--EEEEeCCCeeec
Q psy11557 23 FSNTTGAQVECTARG-SPNPE--IIWIRSDGTAVG 54 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G-~P~P~--I~W~~~dg~~i~ 54 (61)
+.+|...+|.|.+.| .|.++ |+|++ ++..+.
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~ 46 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLS 46 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcc
Confidence 357888999999997 78887 79998 666554
No 129
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.18 E-value=0.00091 Score=38.83 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=26.3
Q ss_pred CCcEEecCCCCeEEEEEecc--cCCCeEEEEeC
Q psy11557 18 PNRIDFSNTTGAQVECTARG--SPNPEIIWIRS 48 (61)
Q Consensus 18 p~~~~~~~g~~v~L~C~A~G--~P~P~I~W~~~ 48 (61)
|..+....|..++|.|...+ .+.+.+.|++.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 45556778889999999998 78999999995
No 130
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.94 E-value=0.0035 Score=36.52 Aligned_cols=35 Identities=9% Similarity=0.270 Sum_probs=29.0
Q ss_pred CcEEecCCCCeEEEEEecccCCCeEEEEeCCCeee
Q psy11557 19 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i 53 (61)
+++.+.+|..+.|+|.+++...-.++|++.+...|
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i 39 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTI 39 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEE
Confidence 45678899999999999999999999997664443
No 131
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.94 E-value=0.0014 Score=37.66 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=27.5
Q ss_pred cEEecCCCCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 20 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 20 ~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.+.+..|+++.|+|...+. ..+|+|++ ||.+|..
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~ 38 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNA 38 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCC
Confidence 3556778889999999995 77999999 7776653
No 132
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.77 E-value=0.0019 Score=37.51 Aligned_cols=31 Identities=19% Similarity=0.518 Sum_probs=23.1
Q ss_pred EecCCCCeEEEEEeccc--C-CCeEEEEeCCCee
Q psy11557 22 DFSNTTGAQVECTARGS--P-NPEIIWIRSDGTA 52 (61)
Q Consensus 22 ~~~~g~~v~L~C~A~G~--P-~P~I~W~~~dg~~ 52 (61)
.+..+..++|.|.|.|. | .=.|+|+++++..
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~ 43 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP 43 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence 34456779999999999 5 3457999965544
No 133
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.68 E-value=0.0044 Score=34.28 Aligned_cols=28 Identities=21% Similarity=0.665 Sum_probs=22.3
Q ss_pred CCCeEEEEEecc-cCCC-eEEEEeCCCeeec
Q psy11557 26 TTGAQVECTARG-SPNP-EIIWIRSDGTAVG 54 (61)
Q Consensus 26 g~~v~L~C~A~G-~P~P-~I~W~~~dg~~i~ 54 (61)
+..++|.|.|.| +|.. .|+|++ ||..+.
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~ 37 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLK-NGKEVT 37 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEE-TTEEET
T ss_pred CCCEEEEEEEEEEECCCcEEEEEe-ccceee
Confidence 556999999999 5666 699987 777654
No 134
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.63 E-value=0.0038 Score=36.11 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=21.3
Q ss_pred CCCeEEEEEecc-cCC-CeEEEEeCCCeee
Q psy11557 26 TTGAQVECTARG-SPN-PEIIWIRSDGTAV 53 (61)
Q Consensus 26 g~~v~L~C~A~G-~P~-P~I~W~~~dg~~i 53 (61)
...++|.|.|.| .|. =+|+|++ ||..+
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~ 42 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLV-DGQVA 42 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence 345999999999 664 5689998 88775
No 135
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=96.48 E-value=0.0054 Score=34.42 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.4
Q ss_pred CCCeEEEEEecccCCC--eEEEEeCCCe
Q psy11557 26 TTGAQVECTARGSPNP--EIIWIRSDGT 51 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P--~I~W~~~dg~ 51 (61)
|+.++|.|.|.|+|.| .++|...++.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 4679999999998755 6799886543
No 136
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.47 E-value=0.011 Score=33.23 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.4
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCCCee
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~ 52 (61)
.|.+...|. .+ +..|+.++|.|.+. .|...+.|++ ||..
T Consensus 2 kP~L~a~p~-~v-V~~G~~VtL~C~~~-~~~~~f~l~k-~g~~ 40 (91)
T cd05751 2 KPSLWAEPS-SV-VPLGKPVTLRCQGP-YGAVEYRLYR-EGST 40 (91)
T ss_pred CCEEEecCC-Cc-cCCCCcEEEEEecC-CCCCEEEEEE-CCCC
Confidence 467777754 33 56788899999997 6889999998 5543
No 137
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.43 E-value=0.014 Score=33.74 Aligned_cols=28 Identities=18% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCeEEEEEecc-cCC-CeEEEEeCCCeeec
Q psy11557 26 TTGAQVECTARG-SPN-PEIIWIRSDGTAVG 54 (61)
Q Consensus 26 g~~v~L~C~A~G-~P~-P~I~W~~~dg~~i~ 54 (61)
+..++|.|.|+| +|. =.|+|++ ||..+.
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~ 44 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLK-NGVPVT 44 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEE-CCeEcc
Confidence 445899999999 674 4579998 887764
No 138
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.42 E-value=0.0039 Score=36.41 Aligned_cols=31 Identities=10% Similarity=0.230 Sum_probs=22.3
Q ss_pred ecCCCCeEEEEEecc-cCCC-eEEEEeCCCeeec
Q psy11557 23 FSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG 54 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G-~P~P-~I~W~~~dg~~i~ 54 (61)
+..+..++|.|.|.| +|.. +|+|++ ||..+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~ 45 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWRE-GNSPSI 45 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence 333456999999999 6633 479998 887653
No 139
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=96.31 E-value=0.0057 Score=40.41 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=25.9
Q ss_pred CCcEEecCCCCeEEEEEecccCCC-----------eEEEEeCC
Q psy11557 18 PNRIDFSNTTGAQVECTARGSPNP-----------EIIWIRSD 49 (61)
Q Consensus 18 p~~~~~~~g~~v~L~C~A~G~P~P-----------~I~W~~~d 49 (61)
...+.+.+|+++.|.|.+.|.|+| .|.|++.|
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~ 71 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTD 71 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCC
Confidence 344667789999999999997755 99999954
No 140
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.18 E-value=0.011 Score=28.67 Aligned_cols=23 Identities=35% Similarity=0.980 Sum_probs=19.3
Q ss_pred eEEEEEecccCCCeEEEEeCCCee
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~ 52 (61)
+.|.|.+.+.|.+.+.|++ ++..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~-~~~~ 23 (74)
T cd00096 1 VTLTCLASGPPPPTITWLK-NGKP 23 (74)
T ss_pred CEEEEEecCCCCCcEEEEE-CCEE
Confidence 4799999999999999998 4443
No 141
>PHA02785 IL-beta-binding protein; Provisional
Probab=96.17 E-value=0.0055 Score=42.00 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=22.8
Q ss_pred cCCCCeEEEEEe-----cccCCCeEEEEeCC
Q psy11557 24 SNTTGAQVECTA-----RGSPNPEIIWIRSD 49 (61)
Q Consensus 24 ~~g~~v~L~C~A-----~G~P~P~I~W~~~d 49 (61)
.+|+.+.|.|.+ .|.|.|+|+|++++
T Consensus 39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g 69 (326)
T PHA02785 39 LENEPVILPCPQINTLSSGYNILDILWEKRG 69 (326)
T ss_pred hcCCCEEEECCCccccccCCCCceEEEEECC
Confidence 468889999997 79999999999954
No 142
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.13 E-value=0.011 Score=33.08 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=23.3
Q ss_pred ecCCCCeEEEEEeccc-CCCeEEEEeCC
Q psy11557 23 FSNTTGAQVECTARGS-PNPEIIWIRSD 49 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~-P~P~I~W~~~d 49 (61)
+..|+.++|.|...+. +...+.|++.+
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 4578889999999997 88999999853
No 143
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.04 E-value=0.019 Score=34.17 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.8
Q ss_pred CcEEecCCCCeEEEEEecccCCCe-EEEEeCCCeeec
Q psy11557 19 NRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVG 54 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~P~P~-I~W~~~dg~~i~ 54 (61)
..+.+..|+++.|.|.....|+|+ ++|.+ ++..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l~ 46 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTLT 46 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCcccC
Confidence 345677899999999999999998 99998 555443
No 144
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.95 E-value=0.023 Score=32.96 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=26.2
Q ss_pred EEcCCCcEEecCCCCeEEEEEeccc-CCCeEEEEeC
Q psy11557 14 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS 48 (61)
Q Consensus 14 ~~~Pp~~~~~~~g~~v~L~C~A~G~-P~P~I~W~~~ 48 (61)
++. +..+.+..|+.++|+|...+. ....+.|++-
T Consensus 3 ~q~-~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 3 TQA-QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred EEe-CCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 455 445567789899999999864 5678999985
No 145
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.89 E-value=0.024 Score=33.36 Aligned_cols=32 Identities=22% Similarity=0.617 Sum_probs=23.2
Q ss_pred CCCcEEecCCCCeEE-EEEe-cccCCCeEEEEeC
Q psy11557 17 PPNRIDFSNTTGAQV-ECTA-RGSPNPEIIWIRS 48 (61)
Q Consensus 17 Pp~~~~~~~g~~v~L-~C~A-~G~P~P~I~W~~~ 48 (61)
+...+...+|.++.+ .|.| .|.|.++|+|+.+
T Consensus 7 ~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 7 PGPSLLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred CCCeeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 344555567777777 6765 5899999999975
No 146
>KOG4194|consensus
Probab=95.71 E-value=0.0098 Score=45.57 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=30.1
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEecccCC-CeEEEEeCCCe
Q psy11557 10 GPIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGT 51 (61)
Q Consensus 10 ~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~-P~I~W~~~dg~ 51 (61)
.|.|..-.... .+..|+.+.|.|.|.|.|. |.+.|+|+|+.
T Consensus 706 ~p~f~~PL~~~-~V~~get~vlqC~a~~~~a~pr~~W~k~d~p 747 (873)
T KOG4194|consen 706 TPSFSIPLEDQ-LVVVGETLVLQCLAEGAPADPRLEWFKEDKP 747 (873)
T ss_pred CCcccccccce-EEEecceEEEEEecCCCCCCccccccCCCCc
Confidence 34554443333 3456778999999999998 99999996654
No 147
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.69 E-value=0.018 Score=32.50 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=22.6
Q ss_pred ecCCCCeEEEEEeccc--CCCeEEEEeCC
Q psy11557 23 FSNTTGAQVECTARGS--PNPEIIWIRSD 49 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~--P~P~I~W~~~d 49 (61)
+..|+.++|.|.+++. ....|.|++-+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQK 31 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence 4678899999999886 67889999854
No 148
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.64 E-value=0.017 Score=33.45 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCCeEEEEEecc-cC-CCeEEEEeCCCeeec
Q psy11557 26 TTGAQVECTARG-SP-NPEIIWIRSDGTAVG 54 (61)
Q Consensus 26 g~~v~L~C~A~G-~P-~P~I~W~~~dg~~i~ 54 (61)
|...+|.|.|.| +| .=.|+|++ ||+++.
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~ 44 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP 44 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEE-CCEECC
Confidence 555799999999 56 33479998 888764
No 149
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=95.40 E-value=0.14 Score=28.77 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=34.5
Q ss_pred cccCCCCcceEEEcCCCcEEecCC---CCeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 3 AAEDDTLGPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 3 ~~~~~~~~P~f~~~Pp~~~~~~~g---~~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
+......+|.|+.-+...+.+... ....|.++|.|. .+.+.|+. ||.++.
T Consensus 3 ~~~~~~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~v-dg~~~g 55 (89)
T PF06832_consen 3 CGQQSGSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFV-DGEPLG 55 (89)
T ss_pred ccccCCCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEE-CCEEcc
Confidence 344555667777665554433322 258899999998 77999998 999883
No 150
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.28 E-value=0.038 Score=32.15 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=18.3
Q ss_pred CeEEEEEec-ccCCCeEEEEeC
Q psy11557 28 GAQVECTAR-GSPNPEIIWIRS 48 (61)
Q Consensus 28 ~v~L~C~A~-G~P~P~I~W~~~ 48 (61)
-..+.|.+. |.|.++|+|+++
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcC
Confidence 389999666 999999999985
No 151
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=95.27 E-value=0.025 Score=32.97 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=23.6
Q ss_pred cCCCCeEEEEEe-c----ccCCCeEEEEeCCCeeecC
Q psy11557 24 SNTTGAQVECTA-R----GSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 24 ~~g~~v~L~C~A-~----G~P~P~I~W~~~dg~~i~~ 55 (61)
..+.+..|.|.- . -++.|+|+|++ |+.+|..
T Consensus 8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~ 43 (95)
T cd05897 8 FTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDK 43 (95)
T ss_pred ccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcC
Confidence 456779999973 2 34789999998 8888753
No 152
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.23 E-value=0.038 Score=30.61 Aligned_cols=33 Identities=18% Similarity=0.568 Sum_probs=27.7
Q ss_pred cCCCcEEecCCCCeEEEEEec-ccCCCeEEEEeC
Q psy11557 16 EPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRS 48 (61)
Q Consensus 16 ~Pp~~~~~~~g~~v~L~C~A~-G~P~P~I~W~~~ 48 (61)
.++..+....|..+.|.|... ......+.|++.
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~ 39 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ 39 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence 346677788899999999999 667889999994
No 153
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.05 E-value=0.041 Score=31.80 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=18.8
Q ss_pred CeEEEEEe-cccCCCeEEEEeC
Q psy11557 28 GAQVECTA-RGSPNPEIIWIRS 48 (61)
Q Consensus 28 ~v~L~C~A-~G~P~P~I~W~~~ 48 (61)
...+.|.+ .|+|.+.|+|+++
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 17 VTVATCVSANGKPPATISWETT 38 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeC
Confidence 48999999 5999999999984
No 154
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.96 E-value=0.063 Score=31.65 Aligned_cols=38 Identities=26% Similarity=0.538 Sum_probs=25.0
Q ss_pred eEEEcCCCcEEecCCCCeEEEEEecc-c-C-CCeEEEEeCCC
Q psy11557 12 IFIKEPPNRIDFSNTTGAQVECTARG-S-P-NPEIIWIRSDG 50 (61)
Q Consensus 12 ~f~~~Pp~~~~~~~g~~v~L~C~A~G-~-P-~P~I~W~~~dg 50 (61)
+|+.- |..-....+..++|.|.+.| + | .=.|+|.++++
T Consensus 6 V~l~p-Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~ 46 (99)
T cd04986 6 LSLQR-PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGG 46 (99)
T ss_pred EEEEC-cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCc
Confidence 45554 44333334567999999999 4 5 34699998543
No 155
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.80 E-value=0.13 Score=29.62 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=25.4
Q ss_pred eEEEcCCCcEEecCCCCeEEEEEecc-cCC-CeEEEEeCCCee
Q psy11557 12 IFIKEPPNRIDFSNTTGAQVECTARG-SPN-PEIIWIRSDGTA 52 (61)
Q Consensus 12 ~f~~~Pp~~~~~~~g~~v~L~C~A~G-~P~-P~I~W~~~dg~~ 52 (61)
+|..-|...- .+ +..++|.|.|.| +|. =+|+|++ ||..
T Consensus 4 v~~l~~~~~~-~~-~~~~~L~C~a~gFyP~~i~vtW~k-~g~~ 43 (95)
T cd04985 4 VFPLVPCCSS-SS-SDSVTLGCLATGFLPEPVTFTWNS-GSNS 43 (95)
T ss_pred EEEeCCCccc-cC-CCcEEEEEEEeeEECCCcEEEEeE-CCEE
Confidence 4555554442 23 345999999999 563 3479998 7775
No 156
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.73 E-value=0.073 Score=30.64 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=22.1
Q ss_pred EecCCCCeEEEEEecccC-CCeEEEEeCC
Q psy11557 22 DFSNTTGAQVECTARGSP-NPEIIWIRSD 49 (61)
Q Consensus 22 ~~~~g~~v~L~C~A~G~P-~P~I~W~~~d 49 (61)
.+..|+.++|+|.+.+.. ...+.|++-+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~ 30 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWR 30 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence 356788899999998854 4689999864
No 157
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=94.61 E-value=0.082 Score=30.78 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCcEEecCCCCeEEEEEecccC----CCeEEEEeC
Q psy11557 18 PNRIDFSNTTGAQVECTARGSP----NPEIIWIRS 48 (61)
Q Consensus 18 p~~~~~~~g~~v~L~C~A~G~P----~P~I~W~~~ 48 (61)
|..+.+..|+.++|.|..+... ...|.|++.
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 3445567888999999887543 367999864
No 158
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=94.32 E-value=0.054 Score=29.68 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=20.8
Q ss_pred CCCeEEEEEecccCCCeEEEEeCC
Q psy11557 26 TTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
|.+|+|.|.......-.|.|++.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~ 24 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGK 24 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCC
Confidence 457999999998888899999964
No 159
>PHA03052 Hypothetical protein; Provisional
Probab=94.29 E-value=0.16 Score=28.57 Aligned_cols=34 Identities=18% Similarity=0.435 Sum_probs=28.3
Q ss_pred CcEEecCCCCeEEEEEec---ccCCCeEEEEeCCCeee
Q psy11557 19 NRIDFSNTTGAQVECTAR---GSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~---G~P~P~I~W~~~dg~~i 53 (61)
..++.+.|+..+|.|+|. |...+.|.|.. |+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEE
Confidence 667788999999999998 44478899986 88877
No 160
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=94.27 E-value=0.079 Score=30.14 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.7
Q ss_pred CCCeEEEEEecccC------CCeEEEEeC
Q psy11557 26 TTGAQVECTARGSP------NPEIIWIRS 48 (61)
Q Consensus 26 g~~v~L~C~A~G~P------~P~I~W~~~ 48 (61)
|+.|+|.|...+.| .+.|.|.+.
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 66799999998875 679999996
No 161
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=94.20 E-value=0.12 Score=30.45 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCcEEecCCCCeEEEEEecccC----CCeEEEEe
Q psy11557 18 PNRIDFSNTTGAQVECTARGSP----NPEIIWIR 47 (61)
Q Consensus 18 p~~~~~~~g~~v~L~C~A~G~P----~P~I~W~~ 47 (61)
+..+.+.+|+.++|.|.-+..+ ...|+|++
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 4556778899999999977543 34699975
No 162
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=94.07 E-value=0.25 Score=28.02 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=26.0
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCC
Q psy11557 11 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 11 P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
|.+...| ..+ +..|+.++|.|.+.- +.=.+.|++++
T Consensus 2 P~l~a~p-~~v-V~~G~~VTL~C~~~~-~~~~f~l~k~g 37 (94)
T cd05711 2 PFLSAHP-SPV-VPSGENVTLQCHSDI-RFDRFILYKEG 37 (94)
T ss_pred CEEEecC-CCc-cCCCCeEEEEEecCC-CCCEEEEEECC
Confidence 6666664 444 467888999998876 55679999854
No 163
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=93.48 E-value=0.16 Score=33.38 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=25.2
Q ss_pred cEEecCCCCeEEEEEec-ccCCCeEEEEeCCC
Q psy11557 20 RIDFSNTTGAQVECTAR-GSPNPEIIWIRSDG 50 (61)
Q Consensus 20 ~~~~~~g~~v~L~C~A~-G~P~P~I~W~~~dg 50 (61)
.+.+.+|++++|.|.-. +.-.+.|+|+|.++
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~ 55 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNK 55 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCC
Confidence 45677888999999984 77789999999644
No 164
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=93.07 E-value=0.17 Score=28.66 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=19.2
Q ss_pred CCCeEEEEEecccC------CCeEEEEeCC
Q psy11557 26 TTGAQVECTARGSP------NPEIIWIRSD 49 (61)
Q Consensus 26 g~~v~L~C~A~G~P------~P~I~W~~~d 49 (61)
|+.++|.|..+..| ...|.|++.+
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 56799999988764 4679999964
No 165
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=93.05 E-value=0.18 Score=29.01 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=21.7
Q ss_pred ecCCCCeEEEEEecccCCCeEEEEeCC
Q psy11557 23 FSNTTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
+..|+.++|+|...+.-...+.|++-.
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 356888999999987656779999864
No 166
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=92.99 E-value=0.32 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=24.4
Q ss_pred EcCCCcEEecCCCCeEEEEEecccC--CCeEEEEeC
Q psy11557 15 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS 48 (61)
Q Consensus 15 ~~Pp~~~~~~~g~~v~L~C~A~G~P--~P~I~W~~~ 48 (61)
++|.. +.+..|+.++|+|..++.- .-.+.|++-
T Consensus 2 ~~~~~-~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 2 VESGP-GLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred ccCCC-eEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 34444 4567898999999987654 467999985
No 167
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=92.94 E-value=0.29 Score=28.60 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=23.7
Q ss_pred ecCCCCeEEEEEecccCCC--eEEEEeCCCeee
Q psy11557 23 FSNTTGAQVECTARGSPNP--EIIWIRSDGTAV 53 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~P~P--~I~W~~~dg~~i 53 (61)
+..|.+.+|.|.+...+.| .|+|+...++.+
T Consensus 11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~ 43 (88)
T cd07694 11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK 43 (88)
T ss_pred eecCCcEEEEEecCCCCCCCccEEEeCCCCccc
Confidence 4457789999999654555 999998777644
No 168
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=92.55 E-value=0.42 Score=28.47 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=21.7
Q ss_pred CcEEecCCCCeEEEEEeccc----CCCeEEEEe
Q psy11557 19 NRIDFSNTTGAQVECTARGS----PNPEIIWIR 47 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~----P~P~I~W~~ 47 (61)
..+....|+.+.|.|.-+.. +..+|+|.+
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 33455678889999999773 457999944
No 169
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=92.28 E-value=0.36 Score=28.24 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCCcEEecCCCCeEEEEEecccC------CCeEEEEeCC
Q psy11557 17 PPNRIDFSNTTGAQVECTARGSP------NPEIIWIRSD 49 (61)
Q Consensus 17 Pp~~~~~~~g~~v~L~C~A~G~P------~P~I~W~~~d 49 (61)
.|..+...+|+.++|.|.-.-.. .-.+.|++.+
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 35556778899999999765221 3569999864
No 170
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=92.09 E-value=0.37 Score=29.33 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=22.3
Q ss_pred EcCCCcEEecCCCCeEEEEEecccCCC---eEEEEeC
Q psy11557 15 KEPPNRIDFSNTTGAQVECTARGSPNP---EIIWIRS 48 (61)
Q Consensus 15 ~~Pp~~~~~~~g~~v~L~C~A~G~P~P---~I~W~~~ 48 (61)
+++..-++.. +.+++|.|+++|.=.. .++|+|.
T Consensus 3 ~~~~~~lv~p-~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 3 VQQSPVLASS-NGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred eecCCeEEcC-CCCEEEEEEecCCccccEEEEEEEEe
Confidence 4444444444 5569999999886544 4889885
No 171
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=91.91 E-value=0.2 Score=27.73 Aligned_cols=23 Identities=17% Similarity=0.536 Sum_probs=18.6
Q ss_pred CeEEEEEecccC---CCeEEEEeCCC
Q psy11557 28 GAQVECTARGSP---NPEIIWIRSDG 50 (61)
Q Consensus 28 ~v~L~C~A~G~P---~P~I~W~~~dg 50 (61)
.|.|.|...+.+ ...|.|++.+.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~ 27 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITG 27 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECC
Confidence 589999998865 55799999654
No 172
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=91.76 E-value=0.34 Score=27.01 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=22.4
Q ss_pred EecCCCCeEEEEEecc-cCCCeEEEEeCC
Q psy11557 22 DFSNTTGAQVECTARG-SPNPEIIWIRSD 49 (61)
Q Consensus 22 ~~~~g~~v~L~C~A~G-~P~P~I~W~~~d 49 (61)
....|.+++|.|.-.. .....+.|++.+
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 3557888999999876 467889999864
No 173
>PHA03376 BARF1; Provisional
Probab=91.57 E-value=0.16 Score=33.99 Aligned_cols=30 Identities=27% Similarity=0.698 Sum_probs=23.8
Q ss_pred ecCCCCeEEEEEecccCCCeEEEEeCCCee
Q psy11557 23 FSNTTGAQVECTARGSPNPEIIWIRSDGTA 52 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~P~P~I~W~~~dg~~ 52 (61)
|...+--.+.|...|.|.|.++|+-+.|..
T Consensus 136 Fp~~~~~~i~C~sggfP~P~~~Wle~~~~~ 165 (221)
T PHA03376 136 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVE 165 (221)
T ss_pred CCCCCeeEEEEecCCcCCchheeccccCCC
Confidence 333444789999999999999999877753
No 174
>KOG3515|consensus
Probab=91.37 E-value=0.21 Score=38.55 Aligned_cols=31 Identities=13% Similarity=0.401 Sum_probs=25.1
Q ss_pred CcEEecCCCCeEEEEEecccC-CCeEEEEeCC
Q psy11557 19 NRIDFSNTTGAQVECTARGSP-NPEIIWIRSD 49 (61)
Q Consensus 19 ~~~~~~~g~~v~L~C~A~G~P-~P~I~W~~~d 49 (61)
.+..+..|+.+.|.|.+.|+| .+.+.|++++
T Consensus 15 l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~ 46 (741)
T KOG3515|consen 15 LTVGLRLGEDVPLPCRVNSNPPEIDVEWYHST 46 (741)
T ss_pred CChhhccCCcceeeeecCCCCCCcceEEEecC
Confidence 333567888999999999887 6779999964
No 175
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=90.94 E-value=0.41 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=18.7
Q ss_pred CCCeEEEEEecccC------------CCeEEEEeC
Q psy11557 26 TTGAQVECTARGSP------------NPEIIWIRS 48 (61)
Q Consensus 26 g~~v~L~C~A~G~P------------~P~I~W~~~ 48 (61)
|..++|.|.-.... .+.|.|++-
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 66799999998654 579999985
No 176
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=90.00 E-value=0.58 Score=27.27 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=19.5
Q ss_pred CCCeEEEEEecccCC----------CeEEEEeCC
Q psy11557 26 TTGAQVECTARGSPN----------PEIIWIRSD 49 (61)
Q Consensus 26 g~~v~L~C~A~G~P~----------P~I~W~~~d 49 (61)
|+.++|+|..+..+. ..|.|++.+
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~ 35 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLS 35 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEec
Confidence 667999999988663 679999963
No 177
>smart00406 IGv Immunoglobulin V-Type.
Probab=89.96 E-value=0.58 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=17.5
Q ss_pred eEEEEEecccCCC--eEEEEeCC
Q psy11557 29 AQVECTARGSPNP--EIIWIRSD 49 (61)
Q Consensus 29 v~L~C~A~G~P~P--~I~W~~~d 49 (61)
+.|.|...+...+ .|.|++..
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~ 24 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQP 24 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeC
Confidence 7899999987765 89999854
No 178
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=89.57 E-value=0.81 Score=26.82 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=18.4
Q ss_pred cCCCCeEEEEEecccCCC--eEEEEeC
Q psy11557 24 SNTTGAQVECTARGSPNP--EIIWIRS 48 (61)
Q Consensus 24 ~~g~~v~L~C~A~G~P~P--~I~W~~~ 48 (61)
.+|.++.|.|. +.|.. .|+|++.
T Consensus 11 ~~G~~V~L~v~--~~p~~~~~~~W~kg 35 (105)
T cd05774 11 AEGENVLLLVH--NLPENLLAYAWYKG 35 (105)
T ss_pred cCCCCEEEEec--CCCCCceEEEEEcC
Confidence 46888999984 55766 9999995
No 179
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=89.37 E-value=1 Score=26.85 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=19.3
Q ss_pred eEEEEE-ecccCCCeEEEEeC-CCe
Q psy11557 29 AQVECT-ARGSPNPEIIWIRS-DGT 51 (61)
Q Consensus 29 v~L~C~-A~G~P~P~I~W~~~-dg~ 51 (61)
..-.|. |.|.|+..|+|.-+ +|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~ 47 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGE 47 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCc
Confidence 778999 88999999999865 344
No 180
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=88.41 E-value=0.96 Score=25.38 Aligned_cols=25 Identities=12% Similarity=0.407 Sum_probs=17.7
Q ss_pred CCCeEEEEEecccCCC-eEEEEeCCC
Q psy11557 26 TTGAQVECTARGSPNP-EIIWIRSDG 50 (61)
Q Consensus 26 g~~v~L~C~A~G~P~P-~I~W~~~dg 50 (61)
|++++|.|.-...... .|.|++.++
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~ 26 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQG 26 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCC
Confidence 5679999986544322 599998654
No 181
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=88.24 E-value=0.53 Score=26.07 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=17.8
Q ss_pred EEecCCCCeEEEEEecccCCCeEEEEeCC
Q psy11557 21 IDFSNTTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 21 ~~~~~g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
|.++ |+.|+|.|.-.+.. |.|.+++
T Consensus 3 Vsis-GTtVtlTCP~~~~~---i~W~~n~ 27 (65)
T cd07692 3 VSIS-GTTVTVTCPLSGDD---IKWKKND 27 (65)
T ss_pred EEEe-ccEEEEECCCCCCC---ceEEeCC
Confidence 3444 66799999866432 9999854
No 182
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=88.11 E-value=1.2 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCCeEEEEEecccC---CCeEEEEeCCC
Q psy11557 26 TTGAQVECTARGSP---NPEIIWIRSDG 50 (61)
Q Consensus 26 g~~v~L~C~A~G~P---~P~I~W~~~dg 50 (61)
|+.+.|.|.-.+.. ...|.|++.+.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~ 28 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQF 28 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCC
Confidence 45799999986432 23688988653
No 183
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=87.74 E-value=1.1 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=20.1
Q ss_pred cCCCCeEEEEEecc-cCC--CeEEEEeCC
Q psy11557 24 SNTTGAQVECTARG-SPN--PEIIWIRSD 49 (61)
Q Consensus 24 ~~g~~v~L~C~A~G-~P~--P~I~W~~~d 49 (61)
..|..+++.|.|.| .|. .+|.|++.+
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~v~LlkG~ 41 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLEIELLKGE 41 (99)
T ss_pred cCCceEEEEEEecCcccCCceEEEEecCc
Confidence 46888999999994 454 679998733
No 184
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=86.81 E-value=1.7 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEecCCCCeEEEEEec-----------ccCCCeEEEEeC
Q psy11557 21 IDFSNTTGAQVECTAR-----------GSPNPEIIWIRS 48 (61)
Q Consensus 21 ~~~~~g~~v~L~C~A~-----------G~P~P~I~W~~~ 48 (61)
+.+.+|+.+.|.|... -+..-.|+|+|+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~ 48 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKS 48 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEEC
Confidence 4566888999999971 122348999994
No 185
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=84.14 E-value=1.7 Score=25.65 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=17.2
Q ss_pred CCCeEEEEEecccC-------CCeEEEEeC
Q psy11557 26 TTGAQVECTARGSP-------NPEIIWIRS 48 (61)
Q Consensus 26 g~~v~L~C~A~G~P-------~P~I~W~~~ 48 (61)
|.++.|.|.-+-.| .+.|.|++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 45799999955333 589999984
No 186
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=82.45 E-value=1.2 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=19.5
Q ss_pred CCCCeEEEEEecc-cCCCeEEEEeC
Q psy11557 25 NTTGAQVECTARG-SPNPEIIWIRS 48 (61)
Q Consensus 25 ~g~~v~L~C~A~G-~P~P~I~W~~~ 48 (61)
.|.+|+|.|...- ...-.|.|++.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~ 27 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFN 27 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecC
Confidence 4778999998865 66778999985
No 187
>KOG3515|consensus
Probab=82.01 E-value=1.3 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.4
Q ss_pred CeEEEEEecccCCCeEEEEeCCCeeecCCCCCC
Q psy11557 28 GAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 60 (61)
Q Consensus 28 ~v~L~C~A~G~P~P~I~W~~~dg~~i~~~~~~~ 60 (61)
.++.+|.|.|.|.+..+|-+ +.......+.+|
T Consensus 611 ~as~~~~a~~~~~~~~~~~k-~p~~~~~~~~~~ 642 (741)
T KOG3515|consen 611 NASDDCVASGVPSTSFTTAK-TPLQTTEGPHIR 642 (741)
T ss_pred cccccceecccccceeeccc-CCCcccCCceEE
Confidence 49999999999999999997 666555555443
No 188
>PHA03112 IL-18 binding protein; Provisional
Probab=75.49 E-value=5 Score=25.31 Aligned_cols=27 Identities=19% Similarity=0.500 Sum_probs=21.0
Q ss_pred CCCCeEEEEEeccc-CC-CeEEEEeCC-Ce
Q psy11557 25 NTTGAQVECTARGS-PN-PEIIWIRSD-GT 51 (61)
Q Consensus 25 ~g~~v~L~C~A~G~-P~-P~I~W~~~d-g~ 51 (61)
+++.+.|+|.|-++ |. --+.|+..| +.
T Consensus 37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s 66 (141)
T PHA03112 37 ETEKVVLECRGCSYFPKFSYVYWLIGNNKS 66 (141)
T ss_pred CCCEEEEEEECccCCCCceEEEEEcCCCcc
Confidence 45569999999987 75 668999766 44
No 189
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=71.61 E-value=6.9 Score=21.84 Aligned_cols=40 Identities=33% Similarity=0.533 Sum_probs=25.0
Q ss_pred CCCCcceEEEcCCCcEEecCCCCeEEEEEecccCCCeEEEEeCC
Q psy11557 6 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 6 ~~~~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
++...|..+-+-+-.+....|.-+.+.- ..|.|.| |++-|
T Consensus 23 SD~~~P~Yife~~GEvl~ikgdYa~vr~---~~PtP~v-WLr~d 62 (67)
T PF11910_consen 23 SDPRPPSYIFEGPGEVLDIKGDYAQVRF---RVPTPDV-WLRLD 62 (67)
T ss_pred cCCCCCcceecCCCeEEEecCCEEEEEe---cCCCCch-hhhhh
Confidence 4555666555545555455565566554 8899999 88743
No 190
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=70.70 E-value=7.9 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=17.8
Q ss_pred CCCeEEEEEecccCC-----------CeEEEEeC
Q psy11557 26 TTGAQVECTARGSPN-----------PEIIWIRS 48 (61)
Q Consensus 26 g~~v~L~C~A~G~P~-----------P~I~W~~~ 48 (61)
+..++|.|.-+-.|. +.|.|.+-
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~ 35 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKI 35 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEe
Confidence 346999999996662 48999984
No 191
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=64.15 E-value=24 Score=20.14 Aligned_cols=36 Identities=19% Similarity=0.563 Sum_probs=23.8
Q ss_pred cCCCcEEecCCCCeEEEEEec-----ccCCCeEEEEeCCCeee
Q psy11557 16 EPPNRIDFSNTTGAQVECTAR-----GSPNPEIIWIRSDGTAV 53 (61)
Q Consensus 16 ~Pp~~~~~~~g~~v~L~C~A~-----G~P~P~I~W~~~dg~~i 53 (61)
.|+..+ +..|+.++..|.-. ......|-|+. |+..|
T Consensus 9 ~p~~pv-v~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~i 49 (89)
T PF06328_consen 9 SPPSPV-VSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKI 49 (89)
T ss_dssp ECSSSE-EETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCES
T ss_pred ecCCCE-EeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEEC
Confidence 345554 56788999999887 34678899998 55543
No 192
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=61.59 E-value=14 Score=20.63 Aligned_cols=21 Identities=19% Similarity=0.571 Sum_probs=15.0
Q ss_pred CeEEEEEecccCCCeEEEEeCCCeeec
Q psy11557 28 GAQVECTARGSPNPEIIWIRSDGTAVG 54 (61)
Q Consensus 28 ~v~L~C~A~G~P~P~I~W~~~dg~~i~ 54 (61)
++.|.|.+. =+|+|++ |..+.
T Consensus 8 ~V~L~C~~~----tsi~W~k--G~~~~ 28 (69)
T cd07691 8 KVFLKCNGA----TNITWKK--GKEIL 28 (69)
T ss_pred eEEEEecCC----CcEEEec--Ccccc
Confidence 499999762 4599997 54443
No 193
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=61.32 E-value=17 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.4
Q ss_pred CeEEEEEecccCCCe--EEEEeC
Q psy11557 28 GAQVECTARGSPNPE--IIWIRS 48 (61)
Q Consensus 28 ~v~L~C~A~G~P~P~--I~W~~~ 48 (61)
.+.|.|.|.|-=+.. |+|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 479999999975444 679985
No 194
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=60.92 E-value=13 Score=21.00 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=16.2
Q ss_pred CeEEEEEecccC---CCeEEEEeC
Q psy11557 28 GAQVECTARGSP---NPEIIWIRS 48 (61)
Q Consensus 28 ~v~L~C~A~G~P---~P~I~W~~~ 48 (61)
.++|.|.=.-.+ .-.|+|++.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEc
Confidence 589999887554 448999985
No 195
>KOG4597|consensus
Probab=60.17 E-value=5.3 Score=30.08 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=21.8
Q ss_pred ecCCCCeEEEEEecccCCCeEEEEe
Q psy11557 23 FSNTTGAQVECTARGSPNPEIIWIR 47 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~P~P~I~W~~ 47 (61)
+..++..+++|-+.|.|.|.|+|-+
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred cccchhhcccccccCCcCceeeeeh
Confidence 4556679999999999999999975
No 196
>KOG1026|consensus
Probab=58.39 E-value=8.1 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=22.2
Q ss_pred cCCCCeEEEEEecccCCCeEEEEeCC
Q psy11557 24 SNTTGAQVECTARGSPNPEIIWIRSD 49 (61)
Q Consensus 24 ~~g~~v~L~C~A~G~P~P~I~W~~~d 49 (61)
..+..+++.|++.|.|.|.+.|+..+
T Consensus 205 ~~~~~~~~~c~~~~~~vp~~~~~~~~ 230 (774)
T KOG1026|consen 205 EEGSSITLKCSQAGIPVPCHYWFPNC 230 (774)
T ss_pred cccchheeeeecccCCCcceeeeccc
Confidence 34566999999999999999999743
No 197
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=56.15 E-value=27 Score=20.00 Aligned_cols=20 Identities=20% Similarity=0.649 Sum_probs=15.2
Q ss_pred CeEEEEEecccCCC-----eEEEEeC
Q psy11557 28 GAQVECTARGSPNP-----EIIWIRS 48 (61)
Q Consensus 28 ~v~L~C~A~G~P~P-----~I~W~~~ 48 (61)
.|.|.|.=.. +.| +|.|.+.
T Consensus 2 ~v~L~C~f~~-~~~~~~~~~V~W~k~ 26 (99)
T cd05886 2 DVVLHCSFIN-PLPPVKITQVTWQKL 26 (99)
T ss_pred cEEEEeEeec-CCCCCCeEEEEEEEC
Confidence 5899999874 234 6999985
No 198
>PF01681 C6: C6 domain; InterPro: IPR002601 This domain of unknown function is found at the C terminus in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins. It may be an extracellular domain. Most copies of the C6 domain contain six conserved cysteine residues. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge. In Q19522 from SWISSPROT there are 18 copies of the domain.
Probab=49.79 E-value=17 Score=20.42 Aligned_cols=22 Identities=27% Similarity=0.733 Sum_probs=17.0
Q ss_pred eEEEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 29 AQVECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 29 v~L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
+.|.|.+.|. |....|..|.++
T Consensus 69 ~~ltCn~~g~------W~y~~g~~ItsV 90 (92)
T PF01681_consen 69 ITLTCNADGQ------WVYTYGRVITSV 90 (92)
T ss_pred EEEEecCCCE------EEECCCEEEEEE
Confidence 8899988884 987677777653
No 199
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=48.81 E-value=28 Score=19.97 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=16.8
Q ss_pred CeEEEEEeccc-CCCeEEEEeCCC
Q psy11557 28 GAQVECTARGS-PNPEIIWIRSDG 50 (61)
Q Consensus 28 ~v~L~C~A~G~-P~P~I~W~~~dg 50 (61)
+++|.|.-... ...+|+|.+.++
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~ 25 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNG 25 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCC
Confidence 58899987632 367788999754
No 200
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=48.23 E-value=18 Score=22.42 Aligned_cols=26 Identities=8% Similarity=0.232 Sum_probs=16.6
Q ss_pred CCeEEEEEeccc-----CCCeEEEEeCCCeee
Q psy11557 27 TGAQVECTARGS-----PNPEIIWIRSDGTAV 53 (61)
Q Consensus 27 ~~v~L~C~A~G~-----P~P~I~W~~~dg~~i 53 (61)
+.+.|+|.+... +.=.|+|++ +|..|
T Consensus 28 ~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~I 58 (130)
T PF08204_consen 28 DTVVIPCFVNNLEANNISEMYVKWKF-KNKDI 58 (130)
T ss_dssp SEEEE--BBSS---SSGGGEEEEEEE-TTEEE
T ss_pred CCEEEEeEeccccccccceEEEEEEE-CCeEE
Confidence 349999999862 334499999 66655
No 201
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=41.76 E-value=68 Score=21.46 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=29.6
Q ss_pred CCcceEEEcCCCcEEecCCCCeEEEEEecccCCC--eEEEEeCCCe
Q psy11557 8 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGT 51 (61)
Q Consensus 8 ~~~P~f~~~Pp~~~~~~~g~~v~L~C~A~G~P~P--~I~W~~~dg~ 51 (61)
...|.....|.-.+.|.+ ...-|.|.=.|.. +++|..+|+.
T Consensus 74 ~~~P~Vy~~P~vsv~F~~---g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 74 TATPSVYPKPRVSVRFED---GYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred ccccceecCCEEEEEecC---CEEEEEcceeeCCCeEEEEEECCcc
Confidence 345667777666777743 4788999988855 8999986653
No 202
>PRK14051 negative regulator GrlR; Provisional
Probab=41.65 E-value=25 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.0
Q ss_pred ecCCCCeEEEEEecccCCCeEEE
Q psy11557 23 FSNTTGAQVECTARGSPNPEIIW 45 (61)
Q Consensus 23 ~~~g~~v~L~C~A~G~P~P~I~W 45 (61)
.+++.+++|+|.+.|+-.-.|.-
T Consensus 80 ~sn~~~~~l~~HV~~Nekl~vdv 102 (123)
T PRK14051 80 LSNDNNLTLHCHVRGNEKLFVDV 102 (123)
T ss_pred eeCCCCeEEEEEEcCCcEEEEEE
Confidence 35677899999999997766653
No 203
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=39.20 E-value=54 Score=18.75 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=16.6
Q ss_pred CeEEEEEecccC-CCeEEEEeCCC
Q psy11557 28 GAQVECTARGSP-NPEIIWIRSDG 50 (61)
Q Consensus 28 ~v~L~C~A~G~P-~P~I~W~~~dg 50 (61)
.++|.|.=...+ .-+|+|.+.++
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~ 25 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHG 25 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCC
Confidence 489999987433 45799988643
No 204
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=36.15 E-value=68 Score=16.71 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.6
Q ss_pred CCCCeEEEEEecc-cCCCeEEEEeCCCee
Q psy11557 25 NTTGAQVECTARG-SPNPEIIWIRSDGTA 52 (61)
Q Consensus 25 ~g~~v~L~C~A~G-~P~P~I~W~~~dg~~ 52 (61)
.+..+.|.+...+ .....++|.+.||..
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~ 41 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTS 41 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCc
Confidence 3556888888776 346788999888753
No 205
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=33.56 E-value=77 Score=16.57 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=18.8
Q ss_pred CCCeEEEEEeccc-CCCeEEEEeCCC
Q psy11557 26 TTGAQVECTARGS-PNPEIIWIRSDG 50 (61)
Q Consensus 26 g~~v~L~C~A~G~-P~P~I~W~~~dg 50 (61)
+..+.|.....+. ....+.|.+.||
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgdg 39 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGDG 39 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCCC
Confidence 4567888777764 457899999887
No 206
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=33.35 E-value=30 Score=20.61 Aligned_cols=21 Identities=33% Similarity=0.825 Sum_probs=18.5
Q ss_pred CCCeEEEEeCCCeeecCCCCCC
Q psy11557 39 PNPEIIWIRSDGTAVGDVPGLR 60 (61)
Q Consensus 39 P~P~I~W~~~dg~~i~~~~~~~ 60 (61)
-.|++-+++ +|..+..++|||
T Consensus 82 ~~PaLvf~R-~g~~lG~i~gi~ 102 (107)
T PF07449_consen 82 RWPALVFFR-DGRYLGAIEGIR 102 (107)
T ss_dssp SSSEEEEEE-TTEEEEEEESSS
T ss_pred cCCeEEEEE-CCEEEEEecCee
Confidence 479998988 999999999987
No 207
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=31.67 E-value=2e+02 Score=22.26 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=29.0
Q ss_pred ceEEEcCCCcEEecCC-----CCeEEEEEecccCCCeEEEEeCCCeeecC
Q psy11557 11 PIFIKEPPNRIDFSNT-----TGAQVECTARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 11 P~f~~~Pp~~~~~~~g-----~~v~L~C~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
|..+..|++...+... ....|...|.| ....+.|+. ||.+|..
T Consensus 644 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~W~~-dg~~~~~ 691 (727)
T TIGR02073 644 SLIISPPLDGIYILRDPDGPKAALLLVLIAAG-GASGLYWFL-DGKLLGE 691 (727)
T ss_pred CcEEecCCCCcEEecCCCCCcccceEEEEecC-CCCceEEEE-CCEEecc
Confidence 5555555555444322 23678888887 667899998 9998854
No 208
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=31.53 E-value=55 Score=20.43 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=24.7
Q ss_pred cEEecCCCCeEEEEEecccC-CCeEEEEeCCCeeecCCCCCC
Q psy11557 20 RIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAVGDVPGLR 60 (61)
Q Consensus 20 ~~~~~~g~~v~L~C~A~G~P-~P~I~W~~~dg~~i~~~~~~~ 60 (61)
.+.+++|..++-.|...|.= +-+=.-+. .|.-+.++||+|
T Consensus 60 RVrL~NG~~VtAyiPg~Gh~lqEH~~Vli-~G~~v~DlPGVR 100 (129)
T COG0048 60 RVRLINGKEVTAYIPGEGHNLQEHSEVLI-RGGRVKDLPGVR 100 (129)
T ss_pred EEEeeCCcEEEEEcCCCCccccccCEEEE-ecCccCCCCCce
Confidence 36667888788888888865 11111122 233378999987
No 209
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=29.58 E-value=57 Score=18.89 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=18.5
Q ss_pred EcCCCcEEecCCCCeEEEEEecccCCCe-EEEE
Q psy11557 15 KEPPNRIDFSNTTGAQVECTARGSPNPE-IIWI 46 (61)
Q Consensus 15 ~~Pp~~~~~~~g~~v~L~C~A~G~P~P~-I~W~ 46 (61)
..|+. .++.-|.++.++|+.+ -|.|. +-|-
T Consensus 8 v~P~~-~vV~~G~Sv~VNCSts-C~~p~~~GLE 38 (91)
T PF03921_consen 8 VSPEE-PVVPPGGSVWVNCSTS-CPQPEKIGLE 38 (91)
T ss_dssp EESSE-EEEETTEEEEEEEEES-SSS-SEEEEE
T ss_pred EECCc-cEECCCCCEEEEEcCC-CCCCCcceEE
Confidence 34444 4566777899999985 35553 3443
No 210
>KOG1480|consensus
Probab=29.51 E-value=19 Score=28.75 Aligned_cols=42 Identities=21% Similarity=0.555 Sum_probs=29.0
Q ss_pred eEEEcCCCcEEecCCCCeEEEE-EecccCCCeEEEEeCCCeeecC
Q psy11557 12 IFIKEPPNRIDFSNTTGAQVEC-TARGSPNPEIIWIRSDGTAVGD 55 (61)
Q Consensus 12 ~f~~~Pp~~~~~~~g~~v~L~C-~A~G~P~P~I~W~~~dg~~i~~ 55 (61)
.|.++|.-.- ++.++..+|.| .+.|.|.-.++|++ ||..+.+
T Consensus 131 ~f~~~p~~q~-V~~~s~~~l~cr~pe~~paae~~w~k-~e~~~~p 173 (909)
T KOG1480|consen 131 HFEQSPVGQE-VQEETTLQLPCRPPEGDPKAEVEWLK-NEVVIDP 173 (909)
T ss_pred hhccChhhhe-ecccccccccccCcccchhhhhhccc-cCCCCCc
Confidence 3667765554 34444555555 56799999999997 8877655
No 211
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=27.99 E-value=93 Score=17.74 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=13.1
Q ss_pred ccCCCeEEEEeC-CCeeec
Q psy11557 37 GSPNPEIIWIRS-DGTAVG 54 (61)
Q Consensus 37 G~P~P~I~W~~~-dg~~i~ 54 (61)
-.+.|.|+|+.. +|..|.
T Consensus 63 ~~~~~~IR~v~~~~G~~vs 81 (89)
T PF04795_consen 63 KPNPPMIRWVSNKNGSRVS 81 (89)
T ss_pred CCCCCEEEEEECCCceEEE
Confidence 345788999986 676663
No 212
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=22.64 E-value=28 Score=18.65 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=0.0
Q ss_pred EEEEecccCCCeEEEEeCCCeeecCC
Q psy11557 31 VECTARGSPNPEIIWIRSDGTAVGDV 56 (61)
Q Consensus 31 L~C~A~G~P~P~I~W~~~dg~~i~~~ 56 (61)
=-|...|.|-|.+. ++|..+.+.
T Consensus 33 ~~cr~kg~pYP~Ld---e~GeI~~~~ 55 (57)
T PF12105_consen 33 KWCRRKGLPYPPLD---EDGEIIADE 55 (57)
T ss_dssp --------------------------
T ss_pred hhcccccccccccc---ccccccccc
Confidence 46999999999985 688776554
No 213
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.90 E-value=91 Score=15.84 Aligned_cols=15 Identities=40% Similarity=0.829 Sum_probs=11.9
Q ss_pred CeEEEEEecccCCCe
Q psy11557 28 GAQVECTARGSPNPE 42 (61)
Q Consensus 28 ~v~L~C~A~G~P~P~ 42 (61)
+....|.++|.+.|-
T Consensus 5 G~~V~CAVTg~~IpL 19 (42)
T PF09866_consen 5 GSFVRCAVTGQPIPL 19 (42)
T ss_pred CCEEEEEeeCCcccH
Confidence 357889999998773
Done!