BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11558
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 99.4 bits (246), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
+ D GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 4 QGDQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 60
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 98.2 bits (243), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/52 (78%), Positives = 48/52 (92%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 54
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 98.2 bits (243), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/52 (78%), Positives = 48/52 (92%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 54
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion
Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig
Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion
Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig
Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion
Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig
Domains
Length = 816
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%), Gaps = 3/64 (4%)
Query: 9 TMAA---EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
T+AA + D GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVP
Sbjct: 26 TLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 85
Query: 66 GLRK 69
GLR+
Sbjct: 86 GLRQ 89
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
P +I EP ++ F+ + A+VEC A G P P++ W + AVGD PG K
Sbjct: 715 PRWILEPTDKA-FAQGSDAKVECKADGFPKPQVTWKK----AVGDTPGEYK 760
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 24 EPPNRIDFSNT------TGAQVECTARGSPNPEIIWIRSDGTAVG 62
EP + F T T ++EC A G+P P I+W R+DG +
Sbjct: 204 EPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA 248
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 18 GPIFIKEPPNRIDF---SNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
GP+F++EP + + F S ++ C +G+P P I W + +GT V
Sbjct: 5 GPVFVQEP-SHVMFPLDSEEKKVKLSCEVKGNPKPHIRW-KLNGTDV 49
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 24 EPPNRIDFSNT------TGAQVECTARGSPNPEIIWIRSDGTAVG 62
EP + F T T ++EC A G+P P I+W R+DG +
Sbjct: 203 EPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA 247
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 18 GPIFIKEPPNRIDF---SNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
GP+F++EP + + F S ++ C +G+P P I W + +GT V
Sbjct: 4 GPVFVQEP-SHVMFPLDSEEKKVKLSCEVKGNPKPHIRW-KLNGTDV 48
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 38 QVECTARGSPNPEIIWIRSDGTAVGD 63
+V CTA G+P P+I+W + + T V D
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVED 710
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar In
Complex With Sucrose Octasulphate
Length = 214
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P+FIK P ++ S + V C A G P P I W++
Sbjct: 7 PVFIKVPEDQTGLSGGVASFV-CQATGEPKPRITWMK 42
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 41 CTARGSPNPEIIWIR 55
C A G+P+PEI W +
Sbjct: 130 CAAGGNPDPEISWFK 144
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P FIKEP ++I S + V C A G P P + W
Sbjct: 7 PRFIKEPKDQIGVSGGVASFV-CQATGDPKPRVTW 40
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 34 TTGAQVECTARGSPNPEIIWIR 55
T A + C A G+P+PEI W +
Sbjct: 123 TRTATMLCAASGNPDPEITWFK 144
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 38 QVECTARGSPNPEIIWIRSDGTAVGD 63
+V CTA G+P P+I+W + + T V D
Sbjct: 29 EVSCTASGNPPPQIMWFKDNETLVED 54
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P FIKEP ++I S + V C A G P P + W
Sbjct: 7 PRFIKEPKDQIGVSGGVASFV-CQATGDPKPRVTW 40
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 34 TTGAQVECTARGSPNPEIIWIR 55
T A + C A G+P+PEI W +
Sbjct: 123 TRTATMLCAASGNPDPEITWFK 144
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P FIKEP ++I S + V C A G P P + W
Sbjct: 7 PRFIKEPKDQIGVSGGVASFV-CQATGDPKPRVTW 40
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 34 TTGAQVECTARGSPNPEIIWIR 55
T A + C A G+P+PEI W +
Sbjct: 123 TRTATMLCAASGNPDPEITWFK 144
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P+F+K P ++ S + V C A G P P I W++
Sbjct: 8 PVFVKVPEDQTGLSGGVASFV-CQATGEPKPRITWMK 43
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 41 CTARGSPNPEIIWIR 55
C A G+P+PEI W +
Sbjct: 131 CAAGGNPDPEISWFK 145
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P+FIK+P ++I S + V C A G P P + W
Sbjct: 7 PVFIKKPVDQIGVSGGVASFV-CQATGDPKPRVTW 40
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 7 RLTMAAEDDTLGPIF--IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
+LT+ ED L P F I P T A + C A G+P+PEI W +
Sbjct: 95 KLTVLREDQ-LPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 10 MAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
+A E + P F K + +D + A+ +C G P+PE++W + D
Sbjct: 33 VAEEKPHVKPYFTKTILD-MDVVEGSAARFDCKVEGYPDPEVMWFKDD 79
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDVPG 66
P F++EP +R +NT + C A+G P P +++W++ D + PG
Sbjct: 107 PYFLEEPEDRTVAANTP-FNLSCQAQGPPEPVDLLWLQ-DAVPLATAPG 153
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
I PP + A + CT G+P P + WI+ D
Sbjct: 103 ITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 35 TGAQVECTARGSPNPEIIWIRSD 57
+ A+ +C G P+PE++W + D
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDD 79
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
F++ P N I A +EC G P P W+R + +V LR KY
Sbjct: 224 FLQRPSNVIAIEGKD-AVLECCVSGYPPPSFTWLRGE-----EVIQLRSKKY 269
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS 56
P F+ P N + + + EC G P P + W+++
Sbjct: 313 PWFLNHPSNLYAYE-SMDIEFECAVSGKPVPTVNWMKN 349
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 16 TLGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
T GP+F +P + + +T QV C AR SP W + +GT + PG R
Sbjct: 1 TFGPVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRW-KMNGTEMKLEPGSR 54
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 7 RLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGT 59
+L +AAED L IK ++ G QV EC A G+P P I W + DG+
Sbjct: 193 QLNLAAEDTRLFAPSIKARFPAETYA-LVGQQVTLECFAFGNPVPRIKWRKVDGS 246
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 12 AEDDTLGPIFIKEPPNRIDFSNTTGAQVE------CTARGSPNPEIIWIRS 56
D G I ++ P + + T A + C A G P P + W+R+
Sbjct: 280 GRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRN 330
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 34 TTGAQVECTARGSPNPEIIWIRSDGTAVG 62
T+ ++ C A G P E+IW SD +
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLS 159
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 34 TTGAQVECTARGSPNPEIIWIRSDGTAVG 62
T+ ++ C A G P E+IW SD +
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLS 159
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 34 TTGAQVECTARGSPNPEIIWIRSDGTAVG 62
T+ ++ C A G P E+IW SD +
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLS 159
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVE------CTARGSPNPEIIWIRSDGTAV 61
GP PP I G +V C ARG P P I+W R +G V
Sbjct: 1 GPGSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVW-RKNGKKV 49
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 1 MYLSLLRLTMAAED-DTLGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSD 57
++ +L++AAED P + P D TG V EC A G+P P+I W + D
Sbjct: 188 VFSKFSQLSLAAEDARQYAPSIKAKFP--ADTYALTGQMVTLECFAFGNPVPQIKWRKLD 245
Query: 58 GT 59
G+
Sbjct: 246 GS 247
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 10 MAAEDDTLGPIFIKEPPNRIDFSNTTGAQV------ECTARGSPNPEIIWIR 55
+ D G I I P+ +D T A + C A G P P + W+R
Sbjct: 279 IKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR 330
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
+++ P + + ++C A G P P I W GT
Sbjct: 407 VYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
+++ P + + ++C A G P P I W GT
Sbjct: 382 VYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 421
>pdb|3UEZ|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|M Chain M, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|N Chain N, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|O Chain O, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|P Chain P, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|Q Chain Q, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|R Chain R, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|A Chain A, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|B Chain B, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|C Chain C, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|D Chain D, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 208
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 1 MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
M L +T + P+ + R F + + V CT P+P + W+ +G
Sbjct: 86 MKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 143
>pdb|2CH8|A Chain A, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|B Chain B, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|C Chain C, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|D Chain D, Structure Of The Epstein-barr Virus Oncogene Barf1
Length = 201
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 1 MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
M L +T + P+ + R F + + V CT P+P + W+ +G
Sbjct: 86 MKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 143
>pdb|4FA8|A Chain A, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|B Chain B, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|D Chain D, Multi-Pronged Modulation Of Cytokine Signaling
Length = 203
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 1 MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
M L +T + P+ + R F + + V CT P+P + W+ +G
Sbjct: 88 MKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 145
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 11 AAEDDTLGPIFIKEPPNRIDFSNTT---GAQVE--CTARGSPNPEIIWIRS 56
A ED+ + + P+ I N T QV C A G P PEI W R+
Sbjct: 81 AGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRA 131
>pdb|3FDG|A Chain A, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
pdb|3FDG|B Chain B, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
Length = 355
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 RGSPNPEIIWIRSDGTAVGDVPGLRK 69
R N E IW++ DGT D+P +++
Sbjct: 20 RNPANRETIWLKGDGTGHLDLPRMKE 45
>pdb|3LY0|A Chain A, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of
Dipeptide L- Ala-D-Ala
pdb|3LY0|B Chain B, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of
Dipeptide L- Ala-D-Ala
Length = 364
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 RGSPNPEIIWIRSDGTAVGDVPGLRK 69
R N E IW++ DGT D+P +++
Sbjct: 22 RNPANRETIWLKGDGTGHLDLPRMKE 47
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
GP I++ P + + C A GSP P I+W R DG V
Sbjct: 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILW-RKDGVLV 49
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 7 RLTMAAEDDT-LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
RLT+ ED G I P T A + C A G+P+PEI W +
Sbjct: 95 RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF 74
P I E P+ + S A + C A G P P I W + D R ++ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 37 AQVECTARGSPNPEIIWIRSDGTAV 61
A C ARG P P I+W R +G V
Sbjct: 24 ASFYCAARGDPPPSIVW-RKNGKKV 47
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF 74
P I E P+ + S A + C A G P P I W + D R ++ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 39 VECTARGSPNPEIIWIRSDGTAVGD 63
+EC A G P P+I W + G D
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSD 266
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 39 VECTARGSPNPEIIWIRS 56
+EC A+G+P P W R+
Sbjct: 37 IECEAKGNPAPSFHWTRN 54
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
PI ++ P N+ + T A ++C A G P P I W++
Sbjct: 9 PIILQGPANQTLAVDGT-ALLKCKATGDPLPVISWLK 44
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 39 VECTARGSPNPEIIWIR 55
+ECT G+ NP + W R
Sbjct: 21 LECTVEGTSNPNLYWYR 37
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
P+ + + C G P PE+ W++++ D
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD 266
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 41 CTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
CTA GSP P + W T V R +K+
Sbjct: 140 CTAEGSPAPSVTW----DTEVKGTTSSRSFKH 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,360,846
Number of Sequences: 62578
Number of extensions: 78635
Number of successful extensions: 239
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 68
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)