Query psy11558
Match_columns 74
No_of_seqs 113 out of 372
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05848 Ig1_Contactin-5 First 99.3 1.6E-11 3.5E-16 74.7 6.8 46 18-65 1-49 (94)
2 cd05850 Ig1_Contactin-2 First 99.2 8.5E-11 1.8E-15 71.4 7.1 47 18-66 1-50 (94)
3 cd07693 Ig1_Robo First immunog 99.2 1.6E-10 3.4E-15 68.4 6.3 44 18-63 1-44 (100)
4 cd05849 Ig1_Contactin-1 First 99.1 3.1E-10 6.8E-15 69.2 6.6 43 18-62 1-46 (93)
5 cd05749 Ig2_Tyro3_like Second 99.1 1.5E-10 3.2E-15 69.5 4.9 41 21-63 1-42 (81)
6 cd05851 Ig3_Contactin-1 Third 99.1 4.5E-10 9.8E-15 67.5 5.7 43 18-62 1-43 (88)
7 cd05722 Ig1_Neogenin First imm 99.0 8.8E-10 1.9E-14 66.3 6.2 44 20-65 1-44 (95)
8 cd05762 Ig8_MLCK Eighth immuno 99.0 9.7E-10 2.1E-14 67.5 6.3 45 19-65 1-45 (98)
9 cd05737 Ig_Myomesin_like_C C-t 99.0 1.7E-09 3.8E-14 64.9 6.7 44 21-65 3-46 (92)
10 PF07679 I-set: Immunoglobulin 99.0 3.1E-09 6.7E-14 62.2 7.3 48 19-68 1-48 (90)
11 cd04972 Ig_TrkABC_d4 Fourth do 99.0 1.9E-09 4.2E-14 64.4 6.4 39 23-62 4-42 (90)
12 cd04967 Ig1_Contactin First Ig 99.0 2.7E-09 5.8E-14 63.9 7.0 45 18-64 1-48 (91)
13 cd05868 Ig4_NrCAM Fourth immun 99.0 1.6E-09 3.6E-14 63.3 5.2 31 34-65 1-31 (76)
14 cd05747 Ig5_Titin_like M5, fif 98.9 4.1E-09 8.9E-14 63.2 6.6 46 17-64 2-47 (92)
15 cd04968 Ig3_Contactin_like Thi 98.9 3.3E-09 7.1E-14 62.9 5.1 40 19-59 2-41 (88)
16 cd05728 Ig4_Contactin-2-like F 98.9 6.5E-09 1.4E-13 61.7 5.4 41 21-63 2-42 (85)
17 cd05870 Ig5_NCAM-2 Fifth immun 98.8 1.4E-08 3E-13 61.6 6.3 43 18-62 2-45 (98)
18 cd05739 Ig3_RPTP_IIa_LAR_like 98.8 5.4E-09 1.2E-13 60.5 4.1 29 34-63 1-29 (69)
19 cd05894 Ig_C5_MyBP-C C5 immuno 98.8 2.1E-08 4.5E-13 60.1 6.2 37 27-64 3-39 (86)
20 cd05867 Ig4_L1-CAM_like Fourth 98.8 1.7E-08 3.6E-13 58.6 5.3 30 34-64 1-30 (76)
21 cd05745 Ig3_Peroxidasin Third 98.8 1.2E-08 2.6E-13 59.0 4.6 30 33-63 1-30 (74)
22 cd05869 Ig5_NCAM-1 Fifth immun 98.8 3.1E-08 6.7E-13 60.0 6.0 43 18-62 2-44 (97)
23 cd05857 Ig2_FGFR Second immuno 98.7 5.4E-08 1.2E-12 56.8 5.6 34 30-64 5-38 (85)
24 cd05730 Ig3_NCAM-1_like Third 98.7 4.2E-08 9.2E-13 58.7 5.1 45 19-64 2-47 (95)
25 cd05758 Ig5_KIRREL3-like Fifth 98.7 1.1E-07 2.3E-12 57.7 6.8 44 18-64 2-46 (98)
26 cd04978 Ig4_L1-NrCAM_like Four 98.7 4.6E-08 9.9E-13 55.9 4.9 31 34-65 1-31 (76)
27 cd05875 Ig6_hNeurofascin_like 98.7 3.6E-08 7.9E-13 58.0 4.5 25 37-62 1-25 (77)
28 cd05773 Ig8_hNephrin_like Eigh 98.7 4.4E-08 9.6E-13 61.0 5.1 46 17-63 3-51 (109)
29 cd05865 Ig1_NCAM-1 First immun 98.7 8.8E-08 1.9E-12 58.8 6.3 37 27-63 8-45 (96)
30 cd05874 Ig6_NrCAM Sixth immuno 98.7 3.5E-08 7.7E-13 58.0 4.3 25 37-62 1-25 (77)
31 cd05723 Ig4_Neogenin Fourth im 98.7 6.1E-08 1.3E-12 55.7 5.1 27 36-63 1-27 (71)
32 cd05892 Ig_Myotilin_C C-termin 98.7 7E-08 1.5E-12 56.9 5.1 26 37-63 1-26 (75)
33 cd05733 Ig6_L1-CAM_like Sixth 98.6 3.9E-08 8.4E-13 57.5 4.0 26 37-63 1-26 (77)
34 cd05891 Ig_M-protein_C C-termi 98.6 1.4E-07 2.9E-12 57.0 6.5 40 25-65 7-46 (92)
35 cd05724 Ig2_Robo Second immuno 98.6 1.5E-07 3.3E-12 54.8 6.1 37 26-63 3-40 (86)
36 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 7.4E-08 1.6E-12 55.8 4.5 26 37-63 1-26 (74)
37 cd04975 Ig4_SCFR_like Fourth i 98.6 8.1E-08 1.8E-12 59.6 4.9 36 27-63 11-47 (101)
38 cd05893 Ig_Palladin_C C-termin 98.6 1E-07 2.2E-12 56.1 4.8 26 37-63 1-26 (75)
39 cd05852 Ig5_Contactin-1 Fifth 98.6 8.9E-08 1.9E-12 55.9 4.4 28 34-62 1-28 (73)
40 cd05760 Ig2_PTK7 Second immuno 98.6 9.9E-08 2.1E-12 55.7 4.6 28 37-65 1-28 (77)
41 cd05732 Ig5_NCAM-1_like Fifth 98.6 1.9E-07 4E-12 55.6 5.6 42 18-62 2-43 (96)
42 cd05764 Ig_2 Subgroup of the i 98.6 1.5E-07 3.3E-12 53.8 5.1 30 34-63 1-30 (74)
43 cd05743 Ig_Perlecan_D2_like Im 98.6 1.8E-07 4E-12 54.5 5.0 29 34-63 1-29 (78)
44 cd05744 Ig_Myotilin_C_like Imm 98.5 2E-07 4.4E-12 54.3 4.9 26 37-63 1-26 (75)
45 cd04974 Ig3_FGFR Third immunog 98.5 1.2E-07 2.6E-12 56.9 4.0 23 34-56 1-23 (90)
46 cd05866 Ig1_NCAM-2 First immun 98.5 3.3E-07 7.2E-12 56.0 5.9 38 26-64 7-44 (92)
47 cd05746 Ig4_Peroxidasin Fourth 98.5 1.1E-07 2.4E-12 54.2 3.5 27 37-64 1-27 (69)
48 cd05863 Ig2_VEGFR-3 Second imm 98.5 2.2E-07 4.7E-12 54.1 4.5 26 37-63 1-26 (67)
49 cd04969 Ig5_Contactin_like Fif 98.5 2.4E-07 5.3E-12 53.2 4.6 30 34-64 1-30 (73)
50 cd05859 Ig4_PDGFR-alpha Fourth 98.5 2.5E-07 5.5E-12 57.2 4.9 35 29-64 13-47 (101)
51 KOG3513|consensus 98.5 2E-07 4.3E-12 77.0 5.3 49 16-66 329-377 (1051)
52 cd05856 Ig2_FGFRL1-like Second 98.5 2.8E-07 6.1E-12 52.8 4.5 32 30-62 5-36 (82)
53 cd05763 Ig_1 Subgroup of the i 98.5 1.9E-07 4.2E-12 53.7 3.7 22 37-58 1-22 (75)
54 cd05748 Ig_Titin_like Immunogl 98.5 4.9E-07 1.1E-11 51.8 4.9 27 37-64 2-28 (74)
55 cd04977 Ig1_NCAM-1_like First 98.4 9.5E-07 2.1E-11 53.3 6.3 39 23-63 5-43 (92)
56 cd05735 Ig8_DSCAM Eight immuno 98.4 6.5E-07 1.4E-11 53.7 5.4 30 34-64 1-30 (88)
57 cd05864 Ig2_VEGFR-2 Second imm 98.4 2.8E-07 6E-12 53.8 3.5 26 37-63 1-26 (70)
58 cd05752 Ig1_FcgammaR_like Frst 98.4 9.2E-07 2E-11 52.4 5.7 42 19-62 1-43 (78)
59 cd05858 Ig3_FGFR-2 Third immun 98.4 7.7E-07 1.7E-11 53.1 5.3 28 34-61 1-31 (90)
60 cd05855 Ig_TrkB_d5 Fifth domai 98.4 5.7E-07 1.2E-11 54.0 4.5 28 38-66 2-29 (79)
61 cd05845 Ig2_L1-CAM_like Second 98.4 6.7E-07 1.5E-11 55.7 4.8 44 18-61 2-46 (95)
62 cd05876 Ig3_L1-CAM Third immun 98.4 3E-07 6.4E-12 52.8 3.0 24 37-61 1-24 (71)
63 cd07702 Ig2_VEGFR-1 Second imm 98.4 6.1E-07 1.3E-11 52.9 4.2 27 37-64 1-27 (72)
64 cd04976 Ig2_VEGFR Second immun 98.4 5.1E-07 1.1E-11 52.1 3.8 27 37-64 1-27 (71)
65 cd05736 Ig2_Follistatin_like S 98.4 9.4E-07 2E-11 50.8 4.6 28 37-65 1-28 (76)
66 cd05740 Ig_CEACAM_D4 Fourth im 98.4 1.2E-06 2.6E-11 53.0 5.2 42 19-62 2-44 (91)
67 KOG3513|consensus 98.3 1.3E-06 2.8E-11 72.3 6.7 51 19-70 40-92 (1051)
68 cd04971 Ig_TrKABC_d5 Fifth dom 98.3 6.4E-07 1.4E-11 53.4 3.7 27 38-65 2-28 (81)
69 cd05754 Ig3_Perlecan_like Thir 98.3 1.8E-06 4E-11 50.7 5.6 37 21-57 3-40 (85)
70 cd05734 Ig7_DSCAM Seventh immu 98.3 3.9E-07 8.5E-12 53.0 2.7 23 37-59 1-23 (79)
71 cd04973 Ig1_FGFR First immunog 98.3 1.4E-06 3.1E-11 51.0 5.1 36 27-64 2-37 (79)
72 cd05882 Ig1_Necl-1 First (N-te 98.3 1.2E-06 2.6E-11 53.8 4.9 33 27-59 5-37 (95)
73 cd05750 Ig_Pro_neuregulin Immu 98.3 1.1E-06 2.3E-11 49.9 4.3 29 37-66 1-30 (75)
74 cd05726 Ig4_Robo Fhird immunog 98.3 9E-07 2E-11 52.7 3.5 25 34-58 1-25 (90)
75 cd05731 Ig3_L1-CAM_like Third 98.3 7.5E-07 1.6E-11 50.1 3.0 22 37-58 1-22 (71)
76 cd07701 Ig1_Necl-3 First (N-te 98.3 2.3E-06 4.9E-11 52.2 4.9 34 26-59 4-37 (95)
77 cd05854 Ig6_Contactin-2 Sixth 98.3 2.5E-06 5.4E-11 50.9 4.9 28 36-64 2-31 (85)
78 cd05765 Ig_3 Subgroup of the i 98.2 1.6E-06 3.6E-11 49.8 3.9 23 34-56 1-23 (81)
79 cd05725 Ig3_Robo Third immunog 98.2 1E-06 2.2E-11 49.9 2.9 22 37-58 1-22 (69)
80 KOG4222|consensus 98.2 1.1E-06 2.3E-11 73.4 3.5 60 9-70 22-82 (1281)
81 cd05873 Ig_Sema4D_like Immunog 98.2 6.9E-06 1.5E-10 50.1 5.8 36 27-64 4-39 (87)
82 KOG4194|consensus 98.2 1.4E-06 3E-11 69.8 3.1 45 16-61 610-654 (873)
83 cd04979 Ig_Semaphorin_C Immuno 98.1 6.1E-06 1.3E-10 48.9 4.4 35 26-62 3-37 (89)
84 cd05729 Ig2_FGFR_like Second i 98.1 1.5E-05 3.3E-10 45.5 5.9 31 31-62 6-36 (85)
85 cd04970 Ig6_Contactin_like Six 98.1 7.2E-06 1.6E-10 48.2 4.2 27 36-63 2-30 (85)
86 PF13895 Ig_2: Immunoglobulin 98.0 1.4E-05 3.1E-10 44.8 4.9 43 19-65 2-44 (80)
87 cd05717 Ig1_Necl-1-3_like Firs 97.9 2.6E-05 5.7E-10 46.6 5.1 34 27-60 5-38 (95)
88 cd05759 Ig2_KIRREL3-like Secon 97.9 2.2E-05 4.8E-10 45.8 4.6 26 37-63 2-28 (82)
89 KOG4221|consensus 97.9 5.4E-05 1.2E-09 63.9 7.3 46 16-63 235-280 (1381)
90 PHA02785 IL-beta-binding prote 97.9 6.9E-05 1.5E-09 54.5 6.9 40 22-63 224-266 (326)
91 smart00408 IGc2 Immunoglobulin 97.8 3.2E-05 6.9E-10 40.7 3.8 28 34-62 2-29 (63)
92 cd05756 Ig1_IL1R_like First im 97.8 3.9E-05 8.4E-10 46.8 4.2 29 31-60 11-44 (94)
93 cd05727 Ig2_Contactin-2-like S 97.8 4.4E-05 9.6E-10 47.6 4.3 40 21-61 5-45 (96)
94 cd05742 Ig1_VEGFR_like First i 97.8 2.8E-05 6.2E-10 45.5 3.1 24 34-57 1-26 (84)
95 PHA02826 IL-1 receptor-like pr 97.7 9.8E-05 2.1E-09 51.8 5.8 38 26-64 136-178 (227)
96 smart00409 IG Immunoglobulin. 97.7 0.00032 6.9E-09 38.5 6.6 35 28-62 3-37 (86)
97 smart00410 IG_like Immunoglobu 97.7 0.00032 6.9E-09 38.5 6.6 35 28-62 3-37 (86)
98 cd05861 Ig1_PDGFR-alphabeta Fr 97.7 8.4E-05 1.8E-09 44.1 4.3 24 34-57 1-24 (84)
99 cd07690 Ig1_CD4 First immunogl 97.6 0.00017 3.6E-09 44.5 4.9 31 29-59 2-32 (94)
100 cd05885 Ig2_Necl-4 Second immu 97.6 0.00011 2.3E-09 44.5 3.9 27 37-64 2-29 (80)
101 cd05761 Ig2_Necl-1-4_like Seco 97.6 0.00012 2.7E-09 43.1 4.1 26 37-63 2-28 (82)
102 cd05853 Ig6_Contactin-4 Sixth 97.6 0.00018 3.9E-09 43.6 4.8 26 36-62 2-29 (85)
103 cd05898 Ig5_KIRREL3 Fifth immu 97.5 0.00036 7.7E-09 43.4 5.9 43 18-63 2-45 (98)
104 cd05895 Ig_Pro_neuregulin-1 Im 97.5 0.00011 2.4E-09 42.1 3.2 26 37-63 1-27 (76)
105 cd07705 Ig2_Necl-1 Second immu 97.5 0.00019 4.1E-09 42.8 4.0 26 37-63 2-28 (83)
106 cd00098 IgC Immunoglobulin Con 97.5 0.00022 4.8E-09 42.0 4.1 31 33-64 12-44 (95)
107 PF00047 ig: Immunoglobulin do 97.4 0.00017 3.6E-09 39.6 3.1 27 34-60 1-28 (64)
108 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00034 7.4E-09 43.4 4.4 36 26-62 8-45 (102)
109 PF08205 C2-set_2: CD80-like C 97.4 0.00041 8.9E-09 40.7 4.5 27 34-60 14-41 (89)
110 cd05884 Ig2_Necl-3 Second immu 97.4 0.00033 7.1E-09 41.9 4.1 26 37-63 2-28 (83)
111 cd05753 Ig2_FcgammaR_like Seco 97.4 0.00057 1.2E-08 40.5 5.0 36 25-62 6-42 (83)
112 cd05899 IgV_TCR_beta Immunoglo 97.4 0.0013 2.8E-08 40.2 6.7 32 25-57 4-35 (110)
113 cd05769 IgC_TCR_beta T cell re 97.3 0.00046 9.9E-09 44.1 4.3 44 18-62 2-47 (115)
114 PF13927 Ig_3: Immunoglobulin 97.3 0.00028 6E-09 38.8 2.9 35 18-54 1-36 (75)
115 KOG4221|consensus 97.3 0.00021 4.6E-09 60.5 3.2 46 16-63 326-371 (1381)
116 cd05771 IgC_Tapasin_R Tapasin- 97.3 0.0011 2.3E-08 42.2 5.8 40 17-57 37-78 (139)
117 cd04983 IgV_TCR_alpha_like Imm 97.3 0.00066 1.4E-08 41.0 4.6 33 24-56 3-35 (109)
118 cd05871 Ig_Semaphorin_classIII 97.2 0.00069 1.5E-08 41.0 4.0 27 29-56 6-32 (91)
119 KOG4222|consensus 97.2 0.00034 7.4E-09 58.9 3.3 45 16-61 313-357 (1281)
120 cd05772 IgC_SIRP Signal-regula 97.2 0.001 2.2E-08 42.0 4.8 31 32-63 19-51 (111)
121 cd07698 IgC_MHC_I_alpha3 Class 97.1 0.0015 3.3E-08 39.3 5.1 25 34-59 14-40 (93)
122 cd04980 IgV_L_kappa Immunoglob 97.1 0.004 8.6E-08 37.8 6.9 34 22-56 4-38 (106)
123 cd07699 IgC_L Immunoglobulin C 97.0 0.0012 2.6E-08 40.6 4.1 43 19-62 2-46 (100)
124 cd05757 Ig2_IL1R_like Second i 97.0 0.001 2.2E-08 40.5 3.7 33 31-64 7-44 (92)
125 cd04982 IgV_TCR_gamma Immunogl 97.0 0.0044 9.6E-08 38.0 6.4 31 26-56 5-37 (116)
126 cd05766 IgC_MHC_II_beta Class 97.0 0.0029 6.4E-08 38.6 5.4 30 33-63 13-44 (94)
127 cd05883 Ig2_Necl-2 Second immu 97.0 0.0015 3.3E-08 39.6 4.0 26 37-63 2-28 (82)
128 cd05755 Ig2_ICAM-1_like Second 96.7 0.006 1.3E-07 38.2 5.4 31 32-63 14-47 (100)
129 cd05872 Ig_Sema4B_like Immunog 96.7 0.0034 7.4E-08 38.1 4.2 35 27-63 4-38 (85)
130 smart00407 IGc1 Immunoglobulin 96.7 0.0035 7.7E-08 36.2 3.9 24 37-61 2-27 (75)
131 cd05881 Ig1_Necl-2 First (N-te 96.5 0.0091 2E-07 36.9 5.3 35 26-60 4-38 (95)
132 PF07654 C1-set: Immunoglobuli 96.4 0.0036 7.7E-08 36.7 2.9 29 34-63 8-38 (83)
133 cd07696 IgC_CH3 CH3 domain (th 96.3 0.0056 1.2E-07 37.6 3.3 35 26-60 6-43 (96)
134 cd05862 Ig1_VEGFR First immuno 96.3 0.0075 1.6E-07 35.8 3.7 26 34-59 1-28 (86)
135 KOG4194|consensus 96.0 0.0052 1.1E-07 49.9 2.8 42 17-59 705-747 (873)
136 cd05847 IgC_CH2_IgE CH2 domain 96.0 0.012 2.6E-07 36.0 3.7 27 34-61 14-42 (94)
137 PHA02826 IL-1 receptor-like pr 95.9 0.011 2.4E-07 41.4 3.6 32 26-57 29-71 (227)
138 cd04984 IgV_L_lambda Immunoglo 95.8 0.036 7.8E-07 33.1 5.2 27 31-57 3-31 (98)
139 cd00099 IgV Immunoglobulin var 95.7 0.021 4.6E-07 33.8 3.9 28 30-57 2-30 (105)
140 cd05767 IgC_MHC_II_alpha Class 95.6 0.055 1.2E-06 33.1 5.4 29 34-63 15-45 (94)
141 PHA02785 IL-beta-binding prote 95.5 0.014 3E-07 42.5 3.0 27 32-58 39-70 (326)
142 cd00096 Ig Immunoglobulin doma 95.5 0.02 4.3E-07 29.2 2.8 23 37-60 1-23 (74)
143 cd07697 IgC_TCR_gamma T cell r 95.4 0.019 4E-07 35.5 3.0 31 31-62 13-45 (96)
144 cd07706 IgV_TCR_delta Immunogl 95.3 0.047 1E-06 33.5 4.6 34 22-56 3-37 (116)
145 cd05751 Ig1_LILRB1_like First 95.3 0.073 1.6E-06 31.6 5.2 39 18-60 2-40 (91)
146 cd07704 Ig2_Nectin-3-4_like Se 95.2 0.05 1.1E-06 34.0 4.5 32 25-56 7-40 (97)
147 cd05860 Ig4_SCFR Fourth immuno 95.2 0.057 1.2E-06 34.1 4.7 35 27-62 11-46 (101)
148 cd05770 IgC_beta2m Class I maj 94.8 0.066 1.4E-06 32.8 4.2 29 33-62 14-44 (93)
149 PF07686 V-set: Immunoglobulin 94.7 0.058 1.3E-06 31.5 3.6 33 24-56 6-39 (114)
150 cd07703 Ig2_Nectin-2_like Seco 94.6 0.072 1.6E-06 32.8 4.0 21 36-56 17-38 (95)
151 cd05719 Ig2_PVR_like Second im 94.5 0.062 1.3E-06 32.9 3.5 21 36-56 17-38 (95)
152 PF06832 BiPBP_C: Penicillin-B 94.3 0.61 1.3E-05 27.7 7.4 51 16-68 8-61 (89)
153 cd05715 Ig_P0-like Immunoglobu 94.1 0.12 2.5E-06 31.9 4.2 31 26-56 5-39 (116)
154 cd05897 Ig2_IL1R2_like Second 93.5 0.096 2.1E-06 32.3 2.9 31 32-63 8-43 (95)
155 cd04985 IgC_CH1 CH1 domain (fi 93.3 0.35 7.6E-06 29.5 5.3 38 20-60 4-43 (95)
156 cd05741 Ig_CEACAM_D1_like Firs 93.3 0.1 2.2E-06 30.2 2.7 24 34-57 1-24 (92)
157 cd07694 Ig2_CD4 Second immunog 93.2 0.28 6E-06 30.4 4.7 32 31-62 11-44 (88)
158 cd07700 IgV_CD8_beta Immunoglo 93.1 0.2 4.4E-06 30.5 4.0 28 31-58 3-31 (107)
159 cd05714 Ig_CSPGs_LP Immunoglob 93.1 0.16 3.4E-06 30.6 3.4 23 34-56 2-30 (106)
160 cd05880 Ig_EVA1 Immunoglobulin 93.0 0.23 5E-06 30.9 4.2 30 26-55 5-38 (115)
161 PHA03052 Hypothetical protein; 93.0 0.46 1E-05 28.3 5.2 34 27-61 5-41 (69)
162 cd04981 IgV_H Immunoglobulin ( 92.7 0.88 1.9E-05 28.3 6.6 33 23-56 2-36 (117)
163 cd05711 Ig_FcalphaRI Immunoglo 92.5 0.51 1.1E-05 28.3 5.1 37 19-58 2-38 (94)
164 cd04986 IgC_CH2 CH2 domain (se 92.5 0.26 5.6E-06 30.8 3.9 38 20-58 6-46 (99)
165 PHA02987 Ig domain OX-2-like p 92.3 0.27 5.9E-06 34.3 4.2 31 28-58 24-55 (189)
166 cd05720 Ig_CD8_alpha Immunoglo 91.9 0.77 1.7E-05 27.9 5.5 27 31-57 3-29 (104)
167 cd05877 Ig_LP_like Immunoglobu 91.1 0.37 8E-06 28.9 3.4 24 34-57 2-31 (106)
168 cd05712 Ig_Siglec_N Immunoglob 90.6 0.63 1.4E-05 28.8 4.2 33 25-57 5-43 (119)
169 cd05879 Ig_P0 Immunoglobulin ( 90.6 0.63 1.4E-05 29.4 4.2 29 27-55 6-38 (116)
170 cd05718 Ig1_PVR_like First imm 89.9 0.38 8.2E-06 28.1 2.6 23 36-58 2-27 (98)
171 cd05716 Ig_pIgR Immunoglobulin 89.4 0.67 1.5E-05 27.3 3.5 28 30-57 3-31 (98)
172 cd05721 IgV_CTLA-4 Immunoglobu 89.3 0.85 1.8E-05 29.4 4.1 33 23-56 3-38 (115)
173 KOG3515|consensus 88.9 0.4 8.8E-06 39.3 2.9 31 28-58 16-47 (741)
174 cd05890 Ig2_Nectin-1_like Seco 88.9 0.85 1.8E-05 28.9 3.8 23 37-59 23-47 (98)
175 cd05900 Ig_Aggrecan Immunoglob 88.4 0.76 1.7E-05 28.9 3.4 23 34-56 2-36 (112)
176 cd07689 Ig2_VCAM-1 Second immu 88.2 1.3 2.8E-05 28.0 4.3 33 19-55 4-39 (99)
177 cd05774 Ig_CEACAM_D1 First imm 88.2 1.4 3E-05 27.4 4.5 24 31-56 10-35 (105)
178 cd07692 Ig_CD3_epsilon Immunog 88.0 0.52 1.1E-05 27.6 2.3 25 29-57 3-27 (65)
179 cd05878 Ig_Aggrecan_like Immun 87.9 0.95 2.1E-05 27.9 3.6 24 34-57 2-35 (110)
180 smart00406 IGv Immunoglobulin 87.6 1 2.2E-05 24.8 3.3 21 37-57 2-24 (81)
181 cd05713 Ig_MOG_like Immunoglob 86.9 1.7 3.6E-05 25.6 4.1 25 34-58 1-28 (100)
182 cd05846 Ig1_MRC-OX-2_like Firs 86.5 1.3 2.8E-05 26.3 3.5 25 34-58 1-26 (97)
183 PHA03376 BARF1; Provisional 85.6 0.64 1.4E-05 33.1 2.1 26 34-59 139-164 (221)
184 cd05902 Ig_Neurocan Immunoglob 81.4 2.4 5.1E-05 26.6 3.2 23 34-56 2-31 (110)
185 KOG3515|consensus 77.0 5.1 0.00011 33.1 4.6 36 36-72 611-646 (741)
186 cd05775 Ig_SLAM-CD84_like_N N- 76.7 2.2 4.7E-05 25.5 2.0 24 33-56 3-27 (97)
187 cd05896 Ig1_IL1RAPL-1_like Fir 76.1 5.3 0.00012 25.2 3.7 28 29-56 10-48 (104)
188 cd05901 Ig_Versican Immunoglob 68.7 8.5 0.00018 24.6 3.4 23 34-56 2-35 (117)
189 PHA03112 IL-18 binding protein 63.0 11 0.00024 25.2 3.2 25 33-57 37-63 (141)
190 PF11910 NdhO: Cyanobacterial 61.9 13 0.00028 22.0 2.9 40 14-57 23-62 (67)
191 cd05886 Ig1_Nectin-1_like Firs 52.7 30 0.00064 21.0 3.7 20 36-56 2-26 (99)
192 KOG4597|consensus 52.4 10 0.00023 30.3 1.9 30 31-60 208-239 (560)
193 KOG1026|consensus 49.9 15 0.00033 30.6 2.5 25 32-56 205-229 (774)
194 cd05888 Ig1_Nectin-4_like Frst 48.8 24 0.00053 21.0 2.8 21 36-56 2-25 (100)
195 PF06328 Lep_receptor_Ig: Ig-l 48.6 59 0.0013 19.6 5.9 36 24-61 9-49 (89)
196 cd07691 Ig_CD3_gamma_delta Imm 48.4 28 0.0006 20.6 2.9 22 36-63 8-29 (69)
197 cd05889 Ig1_DNAM-1_like First 40.1 41 0.00089 20.4 2.9 23 36-58 2-25 (96)
198 PF03921 ICAM_N: Intercellular 37.8 37 0.00081 20.9 2.4 31 23-55 8-39 (91)
199 smart00089 PKD Repeats in poly 36.4 78 0.0017 17.5 5.0 28 33-60 13-41 (79)
200 PF05428 CRF-BP: Corticotropin 36.2 61 0.0013 24.4 3.7 32 13-45 77-108 (311)
201 PHA02865 MHC-like TNF binding 35.9 59 0.0013 24.7 3.6 21 36-56 216-238 (338)
202 PF08204 V-set_CD47: CD47 immu 33.9 40 0.00087 22.1 2.2 26 35-61 28-58 (130)
203 PRK14051 negative regulator Gr 33.9 41 0.00089 21.9 2.2 22 32-53 81-102 (123)
204 cd05887 Ig1_Nectin-3_like Firs 31.9 76 0.0017 19.2 3.1 23 36-58 2-25 (96)
205 PF01681 C6: C6 domain; Inter 30.6 58 0.0013 19.3 2.4 21 37-63 69-89 (92)
206 COG3908 Uncharacterized protei 27.8 75 0.0016 19.1 2.5 14 37-50 29-42 (77)
207 PF02124 Marek_A: Marek's dise 27.6 1.5E+02 0.0032 21.1 4.3 41 16-59 74-116 (211)
208 TIGR02073 PBP_1c penicillin-bi 27.1 2.8E+02 0.006 22.8 6.3 45 19-65 644-693 (727)
209 cd00146 PKD polycystic kidney 26.6 1.2E+02 0.0027 16.7 4.5 25 34-58 14-39 (81)
210 PF10094 DUF2332: Uncharacteri 23.7 72 0.0016 24.0 2.3 29 33-63 168-200 (343)
211 PF09866 DUF2093: Uncharacteri 22.5 75 0.0016 17.1 1.6 13 37-49 6-18 (42)
212 PF11386 VERL: Vitelline envel 22.0 78 0.0017 19.2 1.8 12 37-48 61-72 (78)
No 1
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.28 E-value=1.6e-11 Score=74.71 Aligned_cols=46 Identities=37% Similarity=0.905 Sum_probs=36.8
Q ss_pred cceEEEcCCCcEEec---CCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 18 GPIFIKEPPNRIDFS---NTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~---~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
+|.|+.+|.+.+ +. +|..++|.|.|.|+|.|+|+|++ ||.++....
T Consensus 1 ~P~f~~~p~~~~-~~~~~~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~ 49 (94)
T cd05848 1 GPVFVQEPDDAI-FPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEIDTES 49 (94)
T ss_pred CCeeEECCCcEE-ccCCCCCCEEEEEEEeeecCCCEEEEEE-CCeECccCC
Confidence 589999976644 43 35679999999999999999996 788886443
No 2
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.20 E-value=8.5e-11 Score=71.39 Aligned_cols=47 Identities=30% Similarity=0.637 Sum_probs=37.0
Q ss_pred cceEEEcCCCcEEecCC---CCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558 18 GPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g---~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~ 66 (74)
+|.|+++| +.+.+.+| +.+.|.|.|.|+|.|+|+|++ ||.++....+
T Consensus 1 ~P~f~~~P-~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~~ 50 (94)
T cd05850 1 GPVFEEQP-SSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIKFAPE 50 (94)
T ss_pred CCeeEECC-CCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECccCCC
Confidence 58999985 45456655 359999999999999999996 8888764443
No 3
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.15 E-value=1.6e-10 Score=68.37 Aligned_cols=44 Identities=27% Similarity=0.684 Sum_probs=37.7
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+|.|++.| +++.+.+|+.++|.|.|.|+|.|+|+|++ ||..+..
T Consensus 1 ~P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~ 44 (100)
T cd07693 1 PPRIVEHP-SDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLET 44 (100)
T ss_pred CCeEEecC-ceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECcc
Confidence 58899886 45668889899999999999999999997 7887755
No 4
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.11 E-value=3.1e-10 Score=69.18 Aligned_cols=43 Identities=26% Similarity=0.652 Sum_probs=34.2
Q ss_pred cceEEEcCCCcEEecCCC---CeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 18 GPIFIKEPPNRIDFSNTT---GAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~---~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
+|.|+.+|.+. .+.++. .+.|+|.|.|+|.|+|+|++ ||.++.
T Consensus 1 ~P~f~~~P~~~-~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~ 46 (93)
T cd05849 1 GPVFEEQPIDT-IYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDID 46 (93)
T ss_pred CCEEEECCCCE-EecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEcc
Confidence 58999997654 454433 59999999999999999997 677664
No 5
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.11 E-value=1.5e-10 Score=69.53 Aligned_cols=41 Identities=37% Similarity=0.841 Sum_probs=34.0
Q ss_pred EEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecC
Q psy11558 21 FIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGD 63 (74)
Q Consensus 21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~ 63 (74)
|+++| +++.+..|+.+.|+|.|+|+|.| +|+|.+ ||.++..
T Consensus 1 f~~~P-~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~ 42 (81)
T cd05749 1 FTVEP-EDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGD 42 (81)
T ss_pred CcCCC-CceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCC
Confidence 45664 55678889999999999999999 799996 7888754
No 6
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.06 E-value=4.5e-10 Score=67.46 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=35.4
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
+|.|+..|.+. ....|+.++|.|.|.|+|.|+|+|++ +|.++.
T Consensus 1 ~p~i~~~~~~~-~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~ 43 (88)
T cd05851 1 PADINVKFKDT-YALKGQNVTLECFALGNPVPVIRWRK-ILEPMP 43 (88)
T ss_pred CCceEEccccE-EEeCCCcEEEEEEecccCCCEEEEEE-CCcCCC
Confidence 58899996655 56788899999999999999999997 555543
No 7
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.04 E-value=8.8e-10 Score=66.32 Aligned_cols=44 Identities=30% Similarity=0.587 Sum_probs=35.8
Q ss_pred eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
.|+.+|.+. .+.+|+++.|.|.|.|+|.|+|+|++ ||..+....
T Consensus 1 ~f~~~P~~~-~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~~ 44 (95)
T cd05722 1 WFLSEPSDI-VAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLVS 44 (95)
T ss_pred CcEECCCCe-EEcCCCCEEEeeecccCCCCEEEEEE-CCeECcccc
Confidence 377887654 56678899999999999999999996 888886543
No 8
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.03 E-value=9.7e-10 Score=67.45 Aligned_cols=45 Identities=13% Similarity=0.349 Sum_probs=37.9
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
|.|++.| +.+.+..|+.+.|.|.+.|.|+|+|+|++ ||.+|....
T Consensus 1 p~~~~~p-~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~ 45 (98)
T cd05762 1 PQIIQFP-EDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGE 45 (98)
T ss_pred CceEECC-cCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCC
Confidence 6788885 55567889999999999999999999986 888886544
No 9
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.01 E-value=1.7e-09 Score=64.93 Aligned_cols=44 Identities=20% Similarity=0.537 Sum_probs=37.6
Q ss_pred EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
++...|+.+.+.+|..+.|.|.+.|+|.|+|+|++ ||.++....
T Consensus 3 ~~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~ 46 (92)
T cd05737 3 VVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSD 46 (92)
T ss_pred eeccCCceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCC
Confidence 56677888888899999999999999999999997 788776544
No 10
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.00 E-value=3.1e-09 Score=62.22 Aligned_cols=48 Identities=23% Similarity=0.692 Sum_probs=40.6
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r 68 (74)
|.|+..| .++.+..|++++|.|.++|.|.|+|+|++ ||.++......+
T Consensus 1 P~~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~ 48 (90)
T PF07679_consen 1 PVFTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQ 48 (90)
T ss_dssp EEEEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEE
T ss_pred CEEEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeee
Confidence 7888886 77778899999999999999999999997 688887744443
No 11
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.99 E-value=1.9e-09 Score=64.39 Aligned_cols=39 Identities=36% Similarity=0.571 Sum_probs=32.7
Q ss_pred EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
.+||++.....|+.+.|.|.|.|+|.|+|+|++ ||..+.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~ 42 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVI 42 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEcc
Confidence 445666668889999999999999999999997 676664
No 12
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.99 E-value=2.7e-09 Score=63.87 Aligned_cols=45 Identities=36% Similarity=0.808 Sum_probs=35.2
Q ss_pred cceEEEcCCCcEEecCC---CCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 18 GPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g---~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
+|.|+.+|.+ +.+..+ +.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus 1 ~P~f~~~p~~-~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~~ 48 (91)
T cd04967 1 GPVFEEQPDD-TIFPEESDEGKVSLNCRARGSPPPTYRWLM-NGTEIDDE 48 (91)
T ss_pred CCeeEeCCCC-EEccCCCCCCEEEEEEeeeEcCCCEEEEEE-CCEECCCC
Confidence 5899999665 445433 359999999999999999996 78887443
No 13
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.96 E-value=1.6e-09 Score=63.32 Aligned_cols=31 Identities=29% Similarity=0.758 Sum_probs=26.7
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
|+.++|.|.|.|+|+|+|+|++ ||.++...+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~ 31 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLT-NGVPIEIAP 31 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEE-CCEEccccC
Confidence 4679999999999999999997 898886543
No 14
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.95 E-value=4.1e-09 Score=63.17 Aligned_cols=46 Identities=24% Similarity=0.645 Sum_probs=37.7
Q ss_pred ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
.+|.|+..| +++....|+.+.|+|.|.|+|.|+++|++ ||..+...
T Consensus 2 ~~~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~ 47 (92)
T cd05747 2 LPATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSS 47 (92)
T ss_pred CCCcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCC
Confidence 468888885 55667888899999999999999999997 67776543
No 15
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.91 E-value=3.3e-09 Score=62.91 Aligned_cols=40 Identities=30% Similarity=0.573 Sum_probs=31.9
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~ 59 (74)
|.+...| ..+....|+.++|.|.|.|+|.|+|+|.++++.
T Consensus 2 ~~~~~~p-~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~ 41 (88)
T cd04968 2 SIIVVFP-KDTYALKGQNVTLECFALGNPVPQIKWRKVDGS 41 (88)
T ss_pred CcEEECC-CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCc
Confidence 4556665 555577888999999999999999999985553
No 16
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.87 E-value=6.5e-09 Score=61.70 Aligned_cols=41 Identities=22% Similarity=0.575 Sum_probs=33.6
Q ss_pred EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
|+..| .+.....|+.+.|.|.|.|.|.|+++|++ ||.++..
T Consensus 2 ~~~~p-~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~ 42 (85)
T cd05728 2 WLKVI-SDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLAS 42 (85)
T ss_pred ccccC-CccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCC
Confidence 56665 44567788899999999999999999986 7877754
No 17
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.84 E-value=1.4e-08 Score=61.57 Aligned_cols=43 Identities=33% Similarity=0.607 Sum_probs=33.2
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC-CCeeec
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS-DGTAVG 62 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~-dG~~i~ 62 (74)
+|.++. +. ++...+|+.++|.|.|.|.|.|+|+|++. +|..+.
T Consensus 2 ~p~i~~-~~-~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~ 45 (98)
T cd05870 2 QPHIIQ-LK-NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFS 45 (98)
T ss_pred CCEEEe-ec-cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceec
Confidence 577754 44 45577888999999999999999999985 454443
No 18
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.83 E-value=5.4e-09 Score=60.48 Aligned_cols=29 Identities=24% Similarity=0.676 Sum_probs=24.3
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
|+.+.|.|.|.|+|.|+|+|++ ||.++..
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~~ 29 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMK-GGEELTK 29 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEE-CCEECCC
Confidence 4569999999999999999997 6666643
No 19
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.80 E-value=2.1e-08 Score=60.10 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=31.4
Q ss_pred CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
..+.+..|+.+.|.|.+.|+|+|+|+|++ ||.++...
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~ 39 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTET 39 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccC
Confidence 35567788899999999999999999986 78888654
No 20
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.79 E-value=1.7e-08 Score=58.60 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=25.9
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
|+.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~ 30 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSI-NGAPIEGT 30 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEE-CCEECCCC
Confidence 4579999999999999999996 88887654
No 21
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.79 E-value=1.2e-08 Score=58.96 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=25.8
Q ss_pred CCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 33 NTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 33 ~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+|+.+.|+|.|.|+|.|+|+|++ ||.++..
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~ 30 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSV 30 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEE-CCEECCC
Confidence 46789999999999999999996 7877654
No 22
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.76 E-value=3.1e-08 Score=59.95 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=33.2
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
.|.|+..|.+. ....|+.++|.|.|.|.|.|+|+|++ +|..+.
T Consensus 2 ~p~i~~~~~~~-~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~ 44 (97)
T cd05869 2 KPKITYVENQT-AMELEEQITLTCEASGDPIPSITWRT-STRNIS 44 (97)
T ss_pred CceEEEccCce-EEEcCCCEEEEEEeeEeCCCEEEEEE-CCcccc
Confidence 57777775444 34456789999999999999999997 666654
No 23
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.70 E-value=5.4e-08 Score=56.82 Aligned_cols=34 Identities=21% Similarity=0.640 Sum_probs=28.6
Q ss_pred EecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
.+..|..+.|.|.|.|.|.|+|+|++ ||..+...
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~ 38 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQE 38 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCC
Confidence 35678889999999999999999996 78777543
No 24
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.69 E-value=4.2e-08 Score=58.69 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=33.3
Q ss_pred ceEEEcC-CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 19 PIFIKEP-PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 19 P~fv~~P-p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
|.+...+ +..+....|+.+.|.|.|.|.|.|+|+|.+ ||.++...
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~ 47 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESG 47 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCC
Confidence 4444433 223456678889999999999999999986 78877543
No 25
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.68 E-value=1.1e-07 Score=57.66 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=33.2
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecCC
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDV 64 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~~ 64 (74)
+|.+ ..+++. ....|..+.|.|.|.|+|.| +|+|.+ ||.++...
T Consensus 2 pp~i-~~~~~~-~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~ 46 (98)
T cd05758 2 PPII-TSEATQ-YAILGDKGRVECFIFSTPPPDRIVWTW-KENELESG 46 (98)
T ss_pred CCeE-cCCCcE-EEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccCC
Confidence 4555 444444 45778889999999999999 699986 77777544
No 26
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.68 E-value=4.6e-08 Score=55.95 Aligned_cols=31 Identities=29% Similarity=0.812 Sum_probs=26.2
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
|+.++|.|.|.|+|.|+|+|++ ||.++....
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~ 31 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRL-NGVPIEELP 31 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEE-CCEECCCCC
Confidence 4579999999999999999996 788776544
No 27
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.68 E-value=3.6e-08 Score=57.97 Aligned_cols=25 Identities=36% Similarity=0.872 Sum_probs=21.8
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
+.|+|.|.|+|.|+|+|++ ||.++.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~~ 25 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFFN 25 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEcc
Confidence 4799999999999999997 787664
No 28
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.68 E-value=4.4e-08 Score=61.05 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=34.2
Q ss_pred ccceEEEcCCCcEEec---CCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 17 LGPIFIKEPPNRIDFS---NTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 17 ~~P~fv~~Pp~~v~~~---~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
.+|.|...|......+ .|..+.|.|.|.|+|.|+++|.+ ||.++..
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~ 51 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAK-NGVPLDL 51 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEE-CCEECCC
Confidence 4678776655333232 34569999999999999999996 8888753
No 29
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.68 E-value=8.8e-08 Score=58.84 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=30.1
Q ss_pred CcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeecC
Q psy11558 27 NRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVGD 63 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~~ 63 (74)
++..+..|+.++|+|.|.|.|. |+|+|+++||..+..
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~ 45 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP 45 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc
Confidence 4445778889999999999995 799999878876543
No 30
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.68 E-value=3.5e-08 Score=58.02 Aligned_cols=25 Identities=36% Similarity=0.912 Sum_probs=21.9
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
+.|.|.|.|+|.|+|+|++ ||.++.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~ 25 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECC
Confidence 4799999999999999997 787764
No 31
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.67 E-value=6.1e-08 Score=55.74 Aligned_cols=27 Identities=30% Similarity=0.777 Sum_probs=22.7
Q ss_pred CeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 36 GAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 36 ~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+++|.|.|.|+|.|+|+|.+ ||..+..
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~~ 27 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVK-NGDMVIP 27 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEE-CCeECCC
Confidence 37999999999999999997 6666544
No 32
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.65 E-value=7e-08 Score=56.92 Aligned_cols=26 Identities=31% Similarity=0.704 Sum_probs=22.9
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+.|+|.|.|+|+|+|+|++ ||.+|..
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~~ 26 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQY 26 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECcC
Confidence 5799999999999999997 7888763
No 33
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.65 E-value=3.9e-08 Score=57.46 Aligned_cols=26 Identities=35% Similarity=0.868 Sum_probs=22.6
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
++|.|.|.|+|.|+|+|.+ ||.++..
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~~ 26 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFDP 26 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCC
Confidence 4799999999999999996 8887754
No 34
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.65 E-value=1.4e-07 Score=56.99 Aligned_cols=40 Identities=23% Similarity=0.596 Sum_probs=32.6
Q ss_pred CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
+|..+...+|+.+.|.|.+.|+|.|.+.|++ +|..+....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k-~~~~~~~~~ 46 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFK-NDQDIELSE 46 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEE-CCEECCCCC
Confidence 4567778899999999999999999999997 566555433
No 35
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.63 E-value=1.5e-07 Score=54.76 Aligned_cols=37 Identities=30% Similarity=0.677 Sum_probs=30.7
Q ss_pred CCcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecC
Q psy11558 26 PNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~ 63 (74)
|..+.+..|+.+.|.|.+ .|.|.|+|+|++ ||.++..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~ 40 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNL 40 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCC
Confidence 455567788899999999 899999999997 7877654
No 36
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.62 E-value=7.4e-08 Score=55.77 Aligned_cols=26 Identities=42% Similarity=0.862 Sum_probs=22.7
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
++|+|.|.|+|.|+|+|++ ||.++..
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~~ 26 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVDT 26 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECcc
Confidence 5799999999999999997 7777754
No 37
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.62 E-value=8.1e-08 Score=59.64 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.2
Q ss_pred CcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558 27 NRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~~i~~ 63 (74)
+.+....|+++.|.|.|.| .|+|+|+|++ ||.+|..
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~ 47 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTN 47 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCC
Confidence 4556678889999999999 9999999996 8998864
No 38
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.60 E-value=1e-07 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.857 Sum_probs=22.1
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+.|+|.|.|.|.|+|+|++ ||.++..
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~~ 26 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLTH 26 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECCC
Confidence 5799999999999999997 6666643
No 39
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.60 E-value=8.9e-08 Score=55.94 Aligned_cols=28 Identities=18% Similarity=0.544 Sum_probs=23.9
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
|+.+.|+|.|.|.|.|+|+|++ ||.++.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~ 28 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSK-GTELLV 28 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEe-CCEecc
Confidence 4569999999999999999996 677654
No 40
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.59 E-value=9.9e-08 Score=55.72 Aligned_cols=28 Identities=36% Similarity=0.821 Sum_probs=23.8
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
++|.|.|.|+|.|+|+|++ ||.++....
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~ 28 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQ 28 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCCCC
Confidence 5899999999999999997 788875543
No 41
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.58 E-value=1.9e-07 Score=55.64 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=31.6
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
.|.+. .+++ ....+|+.+.|.|.|.|.|.|+|+|++ +|..+.
T Consensus 2 ~P~i~-~~~~-~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~~ 43 (96)
T cd05732 2 QPKIT-YLEN-QTAVELEQITLTCEAEGDPIPEITWRR-ATRNFS 43 (96)
T ss_pred Cccce-ecCc-eeEecCCcEEEEEEEeEcCCCcEEEEE-CCcccC
Confidence 46665 3333 456678889999999999999999997 555443
No 42
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.58 E-value=1.5e-07 Score=53.84 Aligned_cols=30 Identities=40% Similarity=0.894 Sum_probs=26.2
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
|+.+.|.|.+.|.|.|+|+|+++||..+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~ 30 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISN 30 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecC
Confidence 456999999999999999999888887754
No 43
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.55 E-value=1.8e-07 Score=54.49 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=23.9
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
|+.++|.|.|.|.|.|+|+|++ |+..+..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~ 29 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRL-NWGHVPD 29 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEE-CCeECCC
Confidence 4579999999999999999986 5655543
No 44
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.54 E-value=2e-07 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=22.8
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
++|+|.+.|.|+|+|+|++ ||..+..
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~~ 26 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLTY 26 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECCC
Confidence 5799999999999999997 7887764
No 45
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.54 E-value=1.2e-07 Score=56.86 Aligned_cols=23 Identities=17% Similarity=0.641 Sum_probs=20.9
Q ss_pred CCCeEEEEEEcccCCCeEEEEeC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRS 56 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~ 56 (74)
|+.++|+|.|.|+|.|+|+|++.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEe
Confidence 45799999999999999999985
No 46
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.53 E-value=3.3e-07 Score=56.03 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=31.9
Q ss_pred CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
+.++....|+.+.|+|.|.|.|. .|+|+++||.++...
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~ 44 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS 44 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC
Confidence 45556788989999999999998 999998888887544
No 47
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.53 E-value=1.1e-07 Score=54.25 Aligned_cols=27 Identities=41% Similarity=0.962 Sum_probs=23.1
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
|.|.|.|.|.|.|+|+|++ ||.++...
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~ 27 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQVTES 27 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEECCCC
Confidence 5799999999999999996 78877543
No 48
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.51 E-value=2.2e-07 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=23.1
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.+.|.|+|+++|++ ||.+|..
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~ 26 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLISG 26 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECcc
Confidence 4799999999999999997 8988863
No 49
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.51 E-value=2.4e-07 Score=53.16 Aligned_cols=30 Identities=20% Similarity=0.576 Sum_probs=24.8
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
|+.+.|.|.+.|+|.|+++|.+ +|..+...
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~ 30 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSK-GTELLTNS 30 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEE-CCEEcccC
Confidence 4569999999999999999997 67666443
No 50
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.50 E-value=2.5e-07 Score=57.25 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=29.2
Q ss_pred EEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 29 IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
.....+..+.|.|.+.|.|+|+|+|++ ||.+|...
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~ 47 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIEN 47 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCC
Confidence 345567789999999999999999996 89887643
No 51
>KOG3513|consensus
Probab=98.49 E-value=2e-07 Score=76.99 Aligned_cols=49 Identities=22% Similarity=0.643 Sum_probs=41.3
Q ss_pred CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66 (74)
Q Consensus 16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~ 66 (74)
.++|.|++. +++..+..|+.+++.|.|.|.|.|+|+|.+ ||.++.....
T Consensus 329 ~a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~~r 377 (1051)
T KOG3513|consen 329 YAPPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPAER 377 (1051)
T ss_pred ecCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCccCC
Confidence 468999998 466668888899999999999999999995 9999874443
No 52
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.49 E-value=2.8e-07 Score=52.85 Aligned_cols=32 Identities=25% Similarity=0.717 Sum_probs=26.6
Q ss_pred EecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
....|+.+.|.|.+.|.|.|+|+|++ ||..+.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k-~~~~~~ 36 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLK-DNKPLT 36 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEE-CCcCCc
Confidence 44567789999999999999999997 666553
No 53
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.48 E-value=1.9e-07 Score=53.71 Aligned_cols=22 Identities=45% Similarity=1.102 Sum_probs=19.4
Q ss_pred eEEEEEEcccCCCeEEEEeCCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDG 58 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG 58 (74)
++|.|.|.|.|.|+|+|+++++
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~ 22 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGG 22 (75)
T ss_pred CEeEeecccccCCEEEEEeCCC
Confidence 5799999999999999998544
No 54
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.45 E-value=4.9e-07 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.656 Sum_probs=23.0
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
+.|+|.|.|.|.|+|+|++ ||..+...
T Consensus 2 ~~l~c~~~G~P~p~v~W~k-~g~~l~~~ 28 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSK-DGKPLKLS 28 (74)
T ss_pred EEEEeeEeeeCCCeEEEEE-CCEEcCCC
Confidence 7899999999999999996 77776443
No 55
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.44 E-value=9.5e-07 Score=53.25 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=31.3
Q ss_pred EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
..|+ .+....|+.+.|.|.|.|.| |.|+|++.||..+..
T Consensus 5 v~p~-~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~ 43 (92)
T cd04977 5 IVPS-QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVT 43 (92)
T ss_pred EecC-cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEecc
Confidence 4444 45678888999999999998 599999878877655
No 56
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.44 E-value=6.5e-07 Score=53.67 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=25.4
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
|+.++|.|.|.|.|+|.|+|.+ ||..+...
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~ 30 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPE 30 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEee-CCEECCCC
Confidence 5679999999999999999986 78777543
No 57
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.42 E-value=2.8e-07 Score=53.75 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=22.9
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.|.|.|.|+|+|++ ||.++..
T Consensus 1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~ 26 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYK-NGQLIVL 26 (70)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence 4799999999999999997 8888754
No 58
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.42 E-value=9.2e-07 Score=52.44 Aligned_cols=42 Identities=17% Similarity=0.415 Sum_probs=33.1
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeec
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVG 62 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~ 62 (74)
|+....|+.. .+.+|++++|.|.|.|+|. +.++|++ ||..+.
T Consensus 1 ~vv~~~P~~~-~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~ 43 (78)
T cd05752 1 AVVSLDPPWT-TIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLE 43 (78)
T ss_pred CeEEeCCCCe-EeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEee
Confidence 5667776655 4567888999999999996 4799996 788873
No 59
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.42 E-value=7.7e-07 Score=53.10 Aligned_cols=28 Identities=18% Similarity=0.590 Sum_probs=23.1
Q ss_pred CCCeEEEEEEcccCCCeEEEEeC---CCeee
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRS---DGTAV 61 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~---dG~~i 61 (74)
|+.++|+|.|.|+|.|+|+|++. +|..+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~ 31 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKY 31 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEe
Confidence 45799999999999999999974 35544
No 60
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.40 E-value=5.7e-07 Score=53.99 Aligned_cols=28 Identities=21% Similarity=0.635 Sum_probs=23.7
Q ss_pred EEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558 38 QVECTARGSPNPEIIWIRSDGTAVGDVPG 66 (74)
Q Consensus 38 ~L~C~A~G~P~P~I~W~~~dG~~i~~~~~ 66 (74)
-+.|.+.|+|+|+|+|++ ||.+|.+...
T Consensus 2 ~i~~~v~G~P~Pti~W~k-ng~~l~~~~~ 29 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFH-EGAILNESEY 29 (79)
T ss_pred eEEEEEeEeCCCceEEEE-CCEECCCCcc
Confidence 378999999999999996 8998875543
No 61
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.39 E-value=6.7e-07 Score=55.68 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=36.0
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEE-EcccCCCeEEEEeCCCeee
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGTAV 61 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~-A~G~P~P~I~W~~~dG~~i 61 (74)
.|.|..+..+.+.+.+|.+++|.|. +.|.|.|+|.|++++...+
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i 46 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI 46 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc
Confidence 3667777778888999999999997 7999999999996544434
No 62
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.39 E-value=3e-07 Score=52.83 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=20.1
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeee
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAV 61 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i 61 (74)
+.|.|.|.|+|+|+|+|+++ |.++
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~-~~~~ 24 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRI-DGPL 24 (71)
T ss_pred CEEEEEeeEecCCeEEEEEC-CcCC
Confidence 47999999999999999985 4444
No 63
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.38 E-value=6.1e-07 Score=52.90 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=23.0
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
+.|.|.+.|.|+|+++|.+ ||.++...
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~ 27 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLK-DGLPAAEK 27 (72)
T ss_pred CeEEeeEEEcCCCeEEEEE-CCEECCCC
Confidence 4799999999999999996 78887543
No 64
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.38 E-value=5.1e-07 Score=52.10 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=23.4
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
+.|.|.+.|.|+|+++|++ ||.++...
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~ 27 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISEK 27 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCC
Confidence 4799999999999999997 88887543
No 65
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.36 E-value=9.4e-07 Score=50.83 Aligned_cols=28 Identities=29% Similarity=0.754 Sum_probs=23.2
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
+.|.|.|.|.|+|.|+|++ ||..+....
T Consensus 1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~~~ 28 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLK-NGMDITPKL 28 (76)
T ss_pred CEeEeEeeecCCCEEEEEE-CCEECCCCC
Confidence 4799999999999999986 777775443
No 66
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.35 E-value=1.2e-06 Score=53.04 Aligned_cols=42 Identities=17% Similarity=0.409 Sum_probs=31.1
Q ss_pred ceEEEc-CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 19 PIFIKE-PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 19 P~fv~~-Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
|.+... .+......+|++++|+|.|.|. .|.|+|++ ||.++.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~ 44 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLV 44 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECC
Confidence 555422 2334456788899999999999 99999996 676653
No 67
>KOG3513|consensus
Probab=98.35 E-value=1.3e-06 Score=72.34 Aligned_cols=51 Identities=25% Similarity=0.555 Sum_probs=39.9
Q ss_pred ceEEEcCCCcEEecCCCC--eEEEEEEcccCCCeEEEEeCCCeeecCCCCceEE
Q psy11558 19 PIFIKEPPNRIDFSNTTG--AQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKY 70 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~--v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r~~ 70 (74)
|.|+++|.+.+..-.... +.|+|.|.|+|.|+.+|++ ||..+......+..
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~k-ng~~~d~~~~~~~~ 92 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTK-NGTEFDPTEYPRVS 92 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEE-CCeeccccccccee
Confidence 999999876654443333 9999999999999999996 88877766655544
No 68
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.34 E-value=6.4e-07 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.730 Sum_probs=23.4
Q ss_pred EEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 38 QVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 38 ~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
-++|.|.|+|+|+|+|++ ||.+|....
T Consensus 2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~~ 28 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYH-NGAVLNESD 28 (81)
T ss_pred eEEEEeEeeCCCcEEEEE-CCEECcCCC
Confidence 378999999999999997 898887654
No 69
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.34 E-value=1.8e-06 Score=50.67 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=30.6
Q ss_pred EEEcCCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCC
Q psy11558 21 FIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSD 57 (74)
Q Consensus 21 fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~d 57 (74)
++.++|..+....|+.++|.|.|.| .|.|.|.|++.+
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~ 40 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVG 40 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECC
Confidence 4556677777889999999999985 799999999754
No 70
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.34 E-value=3.9e-07 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.962 Sum_probs=20.3
Q ss_pred eEEEEEEcccCCCeEEEEeCCCe
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGT 59 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~ 59 (74)
|+|+|.|.|.|+|+|+|++.++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~ 23 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGR 23 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCc
Confidence 58999999999999999986553
No 71
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.33 E-value=1.4e-06 Score=50.96 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=28.8
Q ss_pred CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
....+..|+.+.|.|.|.|. .|+|+|++ ||.+|...
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~ 37 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGEN 37 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCC
Confidence 34456788899999999996 68999996 88887653
No 72
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.33 E-value=1.2e-06 Score=53.82 Aligned_cols=33 Identities=9% Similarity=0.266 Sum_probs=27.7
Q ss_pred CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558 27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~ 59 (74)
+++.+..|+++.|+|.|.|.|.|+|.|.+.++.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~ 37 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQ 37 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCcc
Confidence 345677888999999999999999999976553
No 73
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.33 E-value=1.1e-06 Score=49.93 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=24.0
Q ss_pred eEEEEEEcc-cCCCeEEEEeCCCeeecCCCC
Q psy11558 37 AQVECTARG-SPNPEIIWIRSDGTAVGDVPG 66 (74)
Q Consensus 37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~~~~ 66 (74)
.+|.|.|.| +|.|+++|++ ||.++.....
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~ 30 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNK 30 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccccCC
Confidence 369999999 9999999997 7888765443
No 74
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.29 E-value=9e-07 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.763 Sum_probs=21.7
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDG 58 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG 58 (74)
|+.++|.|.|.|+|.|+|.|+++++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~ 25 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGS 25 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCC
Confidence 4579999999999999999997544
No 75
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.29 E-value=7.5e-07 Score=50.10 Aligned_cols=22 Identities=50% Similarity=1.031 Sum_probs=19.3
Q ss_pred eEEEEEEcccCCCeEEEEeCCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDG 58 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG 58 (74)
+.|.|.|.|.|.|+|+|+++++
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~ 22 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGG 22 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCe
Confidence 4799999999999999998544
No 76
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.26 E-value=2.3e-06 Score=52.20 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=28.6
Q ss_pred CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558 26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~ 59 (74)
.+.+.+.+|+++.|+|.+.|.|.|.|.|++.++.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~ 37 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQ 37 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCe
Confidence 3556788999999999999999999999865444
No 77
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.25 E-value=2.5e-06 Score=50.90 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=23.6
Q ss_pred CeEEEEEEcccCCC--eEEEEeCCCeeecCC
Q psy11558 36 GAQVECTARGSPNP--EIIWIRSDGTAVGDV 64 (74)
Q Consensus 36 ~v~L~C~A~G~P~P--~I~W~~~dG~~i~~~ 64 (74)
.++|.|.|.|+|.| +|+|.+ ||.++...
T Consensus 2 ~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~ 31 (85)
T cd05854 2 NLTLQCHASHDPTMDLTFTWSL-DDFPIDLD 31 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEE-CCeEcccc
Confidence 48999999999998 589996 88887543
No 78
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.25 E-value=1.6e-06 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=20.9
Q ss_pred CCCeEEEEEEcccCCCeEEEEeC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRS 56 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~ 56 (74)
|+.++|.|.+.|.|.|+|+|++.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~ 23 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQ 23 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEec
Confidence 45799999999999999999975
No 79
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.24 E-value=1e-06 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.999 Sum_probs=19.4
Q ss_pred eEEEEEEcccCCCeEEEEeCCC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDG 58 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG 58 (74)
++|.|.+.|+|.|+|+|.++++
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~ 22 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDG 22 (69)
T ss_pred CEEEEECccCCCCEEEEEECCc
Confidence 5799999999999999998544
No 80
>KOG4222|consensus
Probab=98.21 E-value=1.1e-06 Score=73.35 Aligned_cols=60 Identities=27% Similarity=0.567 Sum_probs=45.1
Q ss_pred eecccCCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe-eecCCCCceEE
Q psy11558 9 TMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT-AVGDVPGLRKY 70 (74)
Q Consensus 9 ~~~~~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~-~i~~~~~~r~~ 70 (74)
..+......+|.++.-| +++.++.++.++|+|.|+|+|+|+|+|++ ||+ .....++..++
T Consensus 22 ~~~~r~qd~~p~iiehp-~d~vvs~~~patlnc~asG~ppPti~w~k-~G~~~~~~e~~shR~ 82 (1281)
T KOG4222|consen 22 CPSLRAQDQPPRIIEHP-HDLVVSKGEPATLNCKASGDPPPTIEWYK-DGENVFKGEPGSHRF 82 (1281)
T ss_pred ccccccccCCCceEecc-hhhhccCCCCceeecCCCCCCCCceeccc-CCcccCCCCCCCcce
Confidence 34455667899999985 55558888899999999999999999996 774 44455544443
No 81
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.18 E-value=6.9e-06 Score=50.13 Aligned_cols=36 Identities=17% Similarity=0.448 Sum_probs=29.4
Q ss_pred CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558 27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~ 64 (74)
++..+..|+++.|.|.+.+ |.|+|+|.+ ||.+|...
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~ 39 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPE 39 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCC
Confidence 4445778889999999875 889999996 89888654
No 82
>KOG4194|consensus
Probab=98.16 E-value=1.4e-06 Score=69.82 Aligned_cols=45 Identities=36% Similarity=0.742 Sum_probs=37.9
Q ss_pred CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61 (74)
Q Consensus 16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i 61 (74)
...|.|+++| .++....|+-+.|.|.|+|.|.|+|.|.+.+|...
T Consensus 610 ~~~PsFtktP-~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdF 654 (873)
T KOG4194|consen 610 NQAPSFTKTP-EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDF 654 (873)
T ss_pred eccCccccCc-ccceeecccceeeeeeccCCCCcceeehhcCCCCC
Confidence 4689999995 56677788889999999999999999998666543
No 83
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.10 E-value=6.1e-06 Score=48.87 Aligned_cols=35 Identities=11% Similarity=0.426 Sum_probs=28.0
Q ss_pred CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
+..+.+..|+.+.|+|.+.| |.|+|.|++ ||..+.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k-~~~~~~ 37 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLF-QGGPLQ 37 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEE-CCcccc
Confidence 45556778889999999998 999999997 555443
No 84
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.09 E-value=1.5e-05 Score=45.53 Aligned_cols=31 Identities=29% Similarity=0.802 Sum_probs=26.1
Q ss_pred ecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 31 FSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
...|+.+.|.|.|.|.|.|.|+|++ +|..+.
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~ 36 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLK-DGKPFK 36 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEE-CCEECc
Confidence 4567789999999999999999997 666654
No 85
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.07 E-value=7.2e-06 Score=48.19 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=22.9
Q ss_pred CeEEEEEEcccCCC--eEEEEeCCCeeecC
Q psy11558 36 GAQVECTARGSPNP--EIIWIRSDGTAVGD 63 (74)
Q Consensus 36 ~v~L~C~A~G~P~P--~I~W~~~dG~~i~~ 63 (74)
+++|.|.|.|+|.| +++|.+ ||.++..
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~ 30 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSF-NGVPIDF 30 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEE-CCeEeec
Confidence 58999999999999 669996 8888753
No 86
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.04 E-value=1.4e-05 Score=44.85 Aligned_cols=43 Identities=19% Similarity=0.689 Sum_probs=33.0
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
|.+..++ .. +..|+.++|.|.+.|.|.+++.|.+ ++..+...+
T Consensus 2 P~l~~~~-~~--v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~ 44 (80)
T PF13895_consen 2 PVLSSSP-QS--VEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSSQ 44 (80)
T ss_dssp -EEEEES-SE--EETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEES
T ss_pred cEEEccc-eE--EeCCCcEEEEEEEEcccceeeeeee-eeeeeeeee
Confidence 6666664 33 4568889999999999999999997 777776443
No 87
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.94 E-value=2.6e-05 Score=46.62 Aligned_cols=34 Identities=12% Similarity=0.398 Sum_probs=28.3
Q ss_pred CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558 27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 60 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~ 60 (74)
+.+.+..|+++.|.|.+.|.|.|.+.|++.++..
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~ 38 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQT 38 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcE
Confidence 4556788999999999999999999998655543
No 88
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.94 E-value=2.2e-05 Score=45.78 Aligned_cols=26 Identities=46% Similarity=0.995 Sum_probs=22.2
Q ss_pred eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARG-SPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.|.| .|.|+|+|++ ||.++..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~ 28 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLDG 28 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEccC
Confidence 689999998 7999999997 7887654
No 89
>KOG4221|consensus
Probab=97.87 E-value=5.4e-05 Score=63.90 Aligned_cols=46 Identities=26% Similarity=0.663 Sum_probs=37.5
Q ss_pred CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
...-+|+.+|...+ ...|++++|+|.|+|.|+|+|+|++ ||..|.-
T Consensus 235 ~~~~~fl~~p~~~~-v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~ 280 (1381)
T KOG4221|consen 235 LNKLVFLDEPSNAV-VVEGDDVVLECVVSGVPKPSVKWLR-NGEKISV 280 (1381)
T ss_pred ccceeeecCCCccc-cccCCcEEEEEEecCCCCCceEEee-CCeeeee
Confidence 44556999976665 5667789999999999999999997 8988753
No 90
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.85 E-value=6.9e-05 Score=54.49 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=31.7
Q ss_pred EEcCCCcEEecCCCCeEEEEEEcccCCC---eEEEEeCCCeeecC
Q psy11558 22 IKEPPNRIDFSNTTGAQVECTARGSPNP---EIIWIRSDGTAVGD 63 (74)
Q Consensus 22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P---~I~W~~~dG~~i~~ 63 (74)
+..| +.+....|+.+.|.|.|.|.|.| .|.|.+ ||..|..
T Consensus 224 ~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~~ 266 (326)
T PHA02785 224 MQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYEE 266 (326)
T ss_pred ecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECCC
Confidence 4554 55666778889999999999974 899996 8888754
No 91
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.84 E-value=3.2e-05 Score=40.73 Aligned_cols=28 Identities=32% Similarity=0.851 Sum_probs=23.8
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
|+.+.|.|.+.|.|.|++.|++ +|..+.
T Consensus 2 g~~~~l~C~~~~~~~~~v~W~~-~~~~~~ 29 (63)
T smart00408 2 GQSVTLTCPAEGDPVPNITWLK-DGKPLP 29 (63)
T ss_pred CceEEEEeeCccCCCCeEEEEE-CCEECC
Confidence 5679999999999999999997 666554
No 92
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.80 E-value=3.9e-05 Score=46.78 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=24.6
Q ss_pred ecCCCCeEEEEEEcc-----cCCCeEEEEeCCCee
Q psy11558 31 FSNTTGAQVECTARG-----SPNPEIIWIRSDGTA 60 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G-----~P~P~I~W~~~dG~~ 60 (74)
..+|+.+.|.|.+.| +|.|+|+|+++ |..
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~ 44 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGK 44 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCceEEEEEc-CCC
Confidence 457888999999999 79999999984 544
No 93
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.79 E-value=4.4e-05 Score=47.55 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=31.2
Q ss_pred EEEcCCCcEEecCCCCeEEEEE-EcccCCCeEEEEeCCCeee
Q psy11558 21 FIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGTAV 61 (74)
Q Consensus 21 fv~~Pp~~v~~~~g~~v~L~C~-A~G~P~P~I~W~~~dG~~i 61 (74)
|..++.+.+.+.+|++++|+|. -.|.|.|+++|++ |+.++
T Consensus 5 f~~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k-~~~~~ 45 (96)
T cd05727 5 FPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLL-NEFPN 45 (96)
T ss_pred cCcCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEE-CCccc
Confidence 4455566667788999999994 5699999999997 66653
No 94
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.77 E-value=2.8e-05 Score=45.51 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCCeEEEEEEccc--CCCeEEEEeCC
Q psy11558 34 TTGAQVECTARGS--PNPEIIWIRSD 57 (74)
Q Consensus 34 g~~v~L~C~A~G~--P~P~I~W~~~d 57 (74)
|+.++|.|.|.|+ |.|.|+|.+++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~ 26 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPG 26 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCC
Confidence 4579999999999 89999998643
No 95
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.73 E-value=9.8e-05 Score=51.77 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCcEEecCCCCeEEEEEEc-----ccCCCeEEEEeCCCeeecCC
Q psy11558 26 PNRIDFSNTTGAQVECTAR-----GSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~-----G~P~P~I~W~~~dG~~i~~~ 64 (74)
+....+..|+.+.|.|.|. |.|.|+|+|++ ||.+|...
T Consensus 136 ~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~ 178 (227)
T PHA02826 136 TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYT 178 (227)
T ss_pred CccceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCEECCCC
Confidence 3444566788899999997 45789999997 88887543
No 96
>smart00409 IG Immunoglobulin.
Probab=97.70 E-value=0.00032 Score=38.48 Aligned_cols=35 Identities=23% Similarity=0.668 Sum_probs=28.5
Q ss_pred cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
.+....|+.+.|.|.+.+.+.+++.|.+.++..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~ 37 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence 34566788899999999999999999986466654
No 97
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.70 E-value=0.00032 Score=38.48 Aligned_cols=35 Identities=23% Similarity=0.668 Sum_probs=28.5
Q ss_pred cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558 28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~ 62 (74)
.+....|+.+.|.|.+.+.+.+++.|.+.++..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~ 37 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence 34566788899999999999999999986466654
No 98
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.69 E-value=8.4e-05 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.1
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSD 57 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~d 57 (74)
|+.++|.|.|.|+|.|.++|...+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~ 24 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPG 24 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECC
Confidence 567999999999999999999643
No 99
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.60 E-value=0.00017 Score=44.45 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=25.4
Q ss_pred EEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558 29 IDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59 (74)
Q Consensus 29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~ 59 (74)
|....|+.|+|.|.++|.|.|.|.|++++..
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence 3455788899999999999999999875434
No 100
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.60 E-value=0.00011 Score=44.46 Aligned_cols=27 Identities=22% Similarity=0.599 Sum_probs=22.9
Q ss_pred eEEEEEEc-ccCCCeEEEEeCCCeeecCC
Q psy11558 37 AQVECTAR-GSPNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 37 v~L~C~A~-G~P~P~I~W~~~dG~~i~~~ 64 (74)
+.|.|.+. |+|+|+|+|++ ||.+|...
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~ 29 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELKGV 29 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECCCC
Confidence 68999987 78999999997 88888654
No 101
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.59 E-value=0.00012 Score=43.15 Aligned_cols=26 Identities=27% Similarity=0.709 Sum_probs=21.7
Q ss_pred eEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGS-PNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~-P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.|.|. |.|+|+|++ ||..+..
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~ 28 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELKG 28 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEccC
Confidence 6899999875 999999996 6777653
No 102
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.59 E-value=0.00018 Score=43.60 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.6
Q ss_pred CeEEEEEEcc--cCCCeEEEEeCCCeeec
Q psy11558 36 GAQVECTARG--SPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 36 ~v~L~C~A~G--~P~P~I~W~~~dG~~i~ 62 (74)
++.|.|.|.+ ++.++|+|++ ||.+|.
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~-dg~~i~ 29 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSF-NGHLID 29 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEE-CCEECc
Confidence 5899999988 5599999996 899986
No 103
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.55 E-value=0.00036 Score=43.41 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=30.5
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecC
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGD 63 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~ 63 (74)
+|.+..+ .......|+.+.|.|.|.+.|+|. |.|.. ++..|+.
T Consensus 2 pP~i~~~--~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~~ 45 (98)
T cd05898 2 PPIISSE--QVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLES 45 (98)
T ss_pred CCEEecC--ceEEEeCCCcEEEEEEEccCCCCcEEEEEE-ccccccC
Confidence 5666444 334466888999999999999885 68876 4555544
No 104
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.53 E-value=0.00011 Score=42.11 Aligned_cols=26 Identities=19% Similarity=0.638 Sum_probs=21.3
Q ss_pred eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARG-SPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.|.| .|.|+++|++ ||..+..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~ 27 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIGA 27 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCccccc
Confidence 479999985 7899999997 7887753
No 105
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.50 E-value=0.00019 Score=42.80 Aligned_cols=26 Identities=31% Similarity=0.718 Sum_probs=21.9
Q ss_pred eEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGS-PNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~-P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.|.|. |.++|+|++ ||..+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECCC
Confidence 6899999996 999999996 7776654
No 106
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.47 E-value=0.00022 Score=41.99 Aligned_cols=31 Identities=19% Similarity=0.531 Sum_probs=24.8
Q ss_pred CCCCeEEEEEEccc-C-CCeEEEEeCCCeeecCC
Q psy11558 33 NTTGAQVECTARGS-P-NPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 33 ~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~~~ 64 (74)
.|..+.|.|.|.|. | .++|+|.+ ||..+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~ 44 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLK-NGKELTSG 44 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEE-CCEECCCc
Confidence 46679999999998 6 46899997 78876543
No 107
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.44 E-value=0.00017 Score=39.65 Aligned_cols=27 Identities=15% Similarity=0.582 Sum_probs=23.0
Q ss_pred CCCeEEEEEE-cccCCCeEEEEeCCCee
Q psy11558 34 TTGAQVECTA-RGSPNPEIIWIRSDGTA 60 (74)
Q Consensus 34 g~~v~L~C~A-~G~P~P~I~W~~~dG~~ 60 (74)
|+++.|.|.+ .+.|.+.++|.++++..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~ 28 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSL 28 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTT
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccc
Confidence 5679999999 99999999999866543
No 108
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.40 E-value=0.00034 Score=43.40 Aligned_cols=36 Identities=25% Similarity=0.622 Sum_probs=25.0
Q ss_pred CCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558 26 PNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG 62 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~ 62 (74)
|.......+..++|.|.|+| .|+. +|+|.+ ||.++.
T Consensus 8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~ 45 (102)
T cd05768 8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS 45 (102)
T ss_pred cChHHhCcCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence 33333444567999999999 5544 469996 787764
No 109
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.39 E-value=0.00041 Score=40.72 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=20.3
Q ss_pred CCCeEEEE-EEcccCCCeEEEEeCCCee
Q psy11558 34 TTGAQVEC-TARGSPNPEIIWIRSDGTA 60 (74)
Q Consensus 34 g~~v~L~C-~A~G~P~P~I~W~~~dG~~ 60 (74)
|+.+.+.| ...|+|+|+|+|..+++..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 56799999 5568999999999754443
No 110
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.38 E-value=0.00033 Score=41.93 Aligned_cols=26 Identities=27% Similarity=0.786 Sum_probs=22.0
Q ss_pred eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARG-SPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.|.| +|..+|+|++ ||..+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECcC
Confidence 689999998 8999999997 7877644
No 111
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.37 E-value=0.00057 Score=40.49 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=27.1
Q ss_pred CCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeec
Q psy11558 25 PPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVG 62 (74)
Q Consensus 25 Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~ 62 (74)
+|..+ +.+|+.++|.|.+. |.|.+++.|.+ ||..+.
T Consensus 6 ~p~~~-V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~ 42 (83)
T cd05753 6 VPSRV-VFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKK 42 (83)
T ss_pred CCcce-ecCCCCEEEEeeCCCCCcceEEEEEE-CCeEcc
Confidence 34443 56788899999995 57888999997 666654
No 112
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.36 E-value=0.0013 Score=40.24 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=26.8
Q ss_pred CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558 25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57 (74)
Q Consensus 25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d 57 (74)
+|..+.+.+|+.++|.|.+.+ +.+.|.|++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~ 35 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD 35 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence 355566788999999999999 88999998753
No 113
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.31 E-value=0.00046 Score=44.08 Aligned_cols=44 Identities=27% Similarity=0.539 Sum_probs=30.6
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG 62 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~ 62 (74)
+|....-||+..++..++.++|.|.|.| .|.. +|+|++ ||..+.
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~ 47 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKV-NGKEVT 47 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEE-CCEECC
Confidence 3544444666655555556999999999 5764 889997 777654
No 114
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.30 E-value=0.00028 Score=38.79 Aligned_cols=35 Identities=31% Similarity=0.692 Sum_probs=27.4
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEE
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWI 54 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~ 54 (74)
+|.+...+...+ ...++ +.|.|.|.|.| .++++|.
T Consensus 1 kP~I~~~~~~~~-~~~~~-~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 1 KPQISVPPPPVV-TSGGS-VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp ESEEEEESTSEE-ETTEE-EEEEEEESSEESSEEEEEE
T ss_pred CCEEEEcCCCcE-eecee-EEEEEEEccccCCeEEEEE
Confidence 477777766554 33333 99999999999 9999999
No 115
>KOG4221|consensus
Probab=97.29 E-value=0.00021 Score=60.46 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=37.9
Q ss_pred CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
..+|.|+..|...+ .-++.++.|.|.++|.|.|+++|++ ||..+..
T Consensus 326 ~a~P~~~~~p~~l~-A~e~~die~ec~~~g~p~p~v~w~k-Ngd~~ip 371 (1381)
T KOG4221|consen 326 LAPPGFTKAPTTLV-AHESMDIEFECPVSGKPIPTVRWYK-NGDRIIP 371 (1381)
T ss_pred EcCCCCCCCCccee-eeeccceeEeCCCCCCCcceEEEEe-cCcccCc
Confidence 56899999976655 4457789999999999999999996 7877655
No 116
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.28 E-value=0.0011 Score=42.23 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=27.1
Q ss_pred ccceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCC
Q psy11558 17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSD 57 (74)
Q Consensus 17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~d 57 (74)
.+|.....|... ....|..++|.|.|.|. |+ ++|+|++++
T Consensus 37 ~~P~v~~~~~~~-~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g 78 (139)
T cd05771 37 EPPRVRLSLEKL-VSMIEEPQTLICHIAGYYPLDVQVEWTREP 78 (139)
T ss_pred cCCceEEeCCCc-eeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence 456665554433 23356679999999996 54 489999743
No 117
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.28 E-value=0.00066 Score=40.97 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=28.7
Q ss_pred cCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558 24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS 56 (74)
Q Consensus 24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~ 56 (74)
.+|..+....|++|.|.|.+.+.+.+.+.|++.
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~ 35 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ 35 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence 456677788999999999999999999999974
No 118
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.18 E-value=0.00069 Score=40.98 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=22.3
Q ss_pred EEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558 29 IDFSNTTGAQVECTARGSPNPEIIWIRS 56 (74)
Q Consensus 29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~ 56 (74)
+...+|+.+.|+|.+ +.|.|.|+|++.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence 345578889999997 699999999973
No 119
>KOG4222|consensus
Probab=97.18 E-value=0.00034 Score=58.94 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=37.7
Q ss_pred CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61 (74)
Q Consensus 16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i 61 (74)
..+|.|...|.++.... |+.++|+|.+.|+|+|.+.|+++++..+
T Consensus 313 ~apP~f~kkp~dq~v~l-g~~vt~pc~~~gnP~PavfW~keg~q~l 357 (1281)
T KOG4222|consen 313 QAPPSFGKKPRDQKVAL-GGTVTFPCETLGNPPPAVFWLKEGSQDL 357 (1281)
T ss_pred ecCcccccccCcccccc-CceEEeeeecCCCCCcceEEeccCccee
Confidence 57889999988776554 4569999999999999999998777654
No 120
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.17 E-value=0.001 Score=42.05 Aligned_cols=31 Identities=23% Similarity=0.667 Sum_probs=24.2
Q ss_pred cCCCCeEEEEEEcc-cCC-CeEEEEeCCCeeecC
Q psy11558 32 SNTTGAQVECTARG-SPN-PEIIWIRSDGTAVGD 63 (74)
Q Consensus 32 ~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~~ 63 (74)
..|..++|.|.|.| .|+ -+|+|++ ||..+..
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~~ 51 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLK-NGNELSA 51 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECcc
Confidence 35566999999999 564 5899997 8888653
No 121
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.13 E-value=0.0015 Score=39.25 Aligned_cols=25 Identities=36% Similarity=0.846 Sum_probs=20.0
Q ss_pred CCCeEEEEEEccc-CCC-eEEEEeCCCe
Q psy11558 34 TTGAQVECTARGS-PNP-EIIWIRSDGT 59 (74)
Q Consensus 34 g~~v~L~C~A~G~-P~P-~I~W~~~dG~ 59 (74)
++.+.|.|.|.|- |++ +|+|++ ||.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~ 40 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLR-DGE 40 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEE-CCE
Confidence 4569999999995 655 899997 564
No 122
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.10 E-value=0.004 Score=37.80 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=27.5
Q ss_pred EEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeC
Q psy11558 22 IKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRS 56 (74)
Q Consensus 22 v~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~ 56 (74)
.+. |..+...+|++|+|.|.+.+.+ ...+.|++.
T Consensus 4 ~Q~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 4 TQS-PATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred EEC-CCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 455 4555678899999999999887 788999874
No 123
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.04 E-value=0.0012 Score=40.60 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=29.2
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcc-cC-CCeEEEEeCCCeeec
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARG-SP-NPEIIWIRSDGTAVG 62 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~i~ 62 (74)
|.....||.......+..++|.|.|.| .| .-+|+|++ ||..+.
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~ 46 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKV-DGATVS 46 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence 433344444433434556999999999 67 66789996 888764
No 124
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.04 E-value=0.001 Score=40.52 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=25.9
Q ss_pred ecCCCCeEEEEEEccc-----CCCeEEEEeCCCeeecCC
Q psy11558 31 FSNTTGAQVECTARGS-----PNPEIIWIRSDGTAVGDV 64 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~-----P~P~I~W~~~dG~~i~~~ 64 (74)
...|++++|.|.+.+. |.|+|+|++ ||.++...
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~~ 44 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEGD 44 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCCC
Confidence 4467789999998763 689999996 88887643
No 125
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.99 E-value=0.0044 Score=38.01 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=26.4
Q ss_pred CCcEEecCCCCeEEEEEEcc--cCCCeEEEEeC
Q psy11558 26 PNRIDFSNTTGAQVECTARG--SPNPEIIWIRS 56 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G--~P~P~I~W~~~ 56 (74)
|..+....|+.+.|.|.+.+ .+.+.+.|++.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 45556778889999999998 78999999985
No 126
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.98 E-value=0.0029 Score=38.57 Aligned_cols=30 Identities=17% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558 33 NTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD 63 (74)
Q Consensus 33 ~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~ 63 (74)
.+..++|.|.|.| .|+. +++|.+ ||+.+..
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~ 44 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFK-NGQEETE 44 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEE-CCeecCC
Confidence 3567999999999 7866 789996 8877644
No 127
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.96 E-value=0.0015 Score=39.62 Aligned_cols=26 Identities=23% Similarity=0.607 Sum_probs=21.4
Q ss_pred eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARG-SPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.+.| .|.++|+|.+ ||.++..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~ 28 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELTG 28 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECcC
Confidence 689999986 5999999996 7777654
No 128
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.71 E-value=0.006 Score=38.20 Aligned_cols=31 Identities=13% Similarity=0.451 Sum_probs=25.0
Q ss_pred cCCCCeEEEEEEcc-cCCCe--EEEEeCCCeeecC
Q psy11558 32 SNTTGAQVECTARG-SPNPE--IIWIRSDGTAVGD 63 (74)
Q Consensus 32 ~~g~~v~L~C~A~G-~P~P~--I~W~~~dG~~i~~ 63 (74)
.+|....|.|.+.| .|.++ |+|++ ++..+..
T Consensus 14 ~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~ 47 (100)
T cd05755 14 PVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLSR 47 (100)
T ss_pred cCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEccc
Confidence 57888999999997 78887 79997 6666654
No 129
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.71 E-value=0.0034 Score=38.13 Aligned_cols=35 Identities=14% Similarity=0.383 Sum_probs=28.1
Q ss_pred CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
..+.+..|+++.|.|...+. ..+++|.+ ||.++..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~ 38 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNA 38 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCC
Confidence 34566778899999999995 77999997 7877754
No 130
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.67 E-value=0.0035 Score=36.23 Aligned_cols=24 Identities=33% Similarity=0.786 Sum_probs=19.8
Q ss_pred eEEEEEEccc-CC-CeEEEEeCCCeee
Q psy11558 37 AQVECTARGS-PN-PEIIWIRSDGTAV 61 (74)
Q Consensus 37 v~L~C~A~G~-P~-P~I~W~~~dG~~i 61 (74)
++|.|.|.|. |+ .+|+|++ ||.++
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEEC
Confidence 6899999996 55 6999997 78763
No 131
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.54 E-value=0.0091 Score=36.86 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=29.1
Q ss_pred CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558 26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 60 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~ 60 (74)
-+.+...+|+++.|.|.+++.....+.|++.+...
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~ 38 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQT 38 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcE
Confidence 35577889999999999999999999999766443
No 132
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.42 E-value=0.0036 Score=36.66 Aligned_cols=29 Identities=21% Similarity=0.673 Sum_probs=22.8
Q ss_pred CCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558 34 TTGAQVECTARG-SPNP-EIIWIRSDGTAVGD 63 (74)
Q Consensus 34 g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~ 63 (74)
+..+.|.|.|.| .|.. +|+|.+ ||..+..
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~ 38 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLK-NGKEVTE 38 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEE-TTEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEEe-ccceeee
Confidence 556999999999 6766 699986 7876643
No 133
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.29 E-value=0.0056 Score=37.63 Aligned_cols=35 Identities=20% Similarity=0.511 Sum_probs=24.5
Q ss_pred CCcEEecCCCCeEEEEEEccc--C-CCeEEEEeCCCee
Q psy11558 26 PNRIDFSNTTGAQVECTARGS--P-NPEIIWIRSDGTA 60 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~--P-~P~I~W~~~dG~~ 60 (74)
|+.-++..+..++|.|.|.|- | .=+|+|++++|..
T Consensus 6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~ 43 (96)
T cd07696 6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP 43 (96)
T ss_pred cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence 333334456679999999999 5 4457999865554
No 134
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=96.28 E-value=0.0075 Score=35.82 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.3
Q ss_pred CCCeEEEEEEcccCCC--eEEEEeCCCe
Q psy11558 34 TTGAQVECTARGSPNP--EIIWIRSDGT 59 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P--~I~W~~~dG~ 59 (74)
|+.++|.|.|.|+|.| .++|..+++.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 5679999999998755 6799875543
No 135
>KOG4194|consensus
Probab=96.04 E-value=0.0052 Score=49.91 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=31.4
Q ss_pred ccceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCe
Q psy11558 17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGT 59 (74)
Q Consensus 17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~ 59 (74)
+.|.|..-.... .+..|+.++|.|.|.|.|. |.+.|++.|+.
T Consensus 705 e~p~f~~PL~~~-~V~~get~vlqC~a~~~~a~pr~~W~k~d~p 747 (873)
T KOG4194|consen 705 ETPSFSIPLEDQ-LVVVGETLVLQCLAEGAPADPRLEWFKEDKP 747 (873)
T ss_pred cCCcccccccce-EEEecceEEEEEecCCCCCCccccccCCCCc
Confidence 445555443333 4567888999999999998 99999986664
No 136
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=95.99 E-value=0.012 Score=35.99 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=21.3
Q ss_pred CCCeEEEEEEcc-cCC-CeEEEEeCCCeee
Q psy11558 34 TTGAQVECTARG-SPN-PEIIWIRSDGTAV 61 (74)
Q Consensus 34 g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i 61 (74)
+..+.|.|.|.| .|. =+|+|.+ ||..+
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~ 42 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLV-DGQVA 42 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence 345999999999 664 5689996 78775
No 137
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=95.87 E-value=0.011 Score=41.43 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=26.1
Q ss_pred CCcEEecCCCCeEEEEEEcccCCC-----------eEEEEeCC
Q psy11558 26 PNRIDFSNTTGAQVECTARGSPNP-----------EIIWIRSD 57 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~P~P-----------~I~W~~~d 57 (74)
...+.+.+|+++.|.|.+.|.|+| +|.|.+.|
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~ 71 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTD 71 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCC
Confidence 455667789999999999997655 99999854
No 138
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.80 E-value=0.036 Score=33.05 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=22.5
Q ss_pred ecCCCCeEEEEEEccc--CCCeEEEEeCC
Q psy11558 31 FSNTTGAQVECTARGS--PNPEIIWIRSD 57 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~--P~P~I~W~~~d 57 (74)
+..|++|+|.|.+++. ....|.|++.+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQK 31 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence 5678899999999986 67889998753
No 139
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.72 E-value=0.021 Score=33.79 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=23.7
Q ss_pred EecCCCCeEEEEEEccc-CCCeEEEEeCC
Q psy11558 30 DFSNTTGAQVECTARGS-PNPEIIWIRSD 57 (74)
Q Consensus 30 ~~~~g~~v~L~C~A~G~-P~P~I~W~~~d 57 (74)
.+..|+.+.|.|.+.+. +...+.|.+.+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 35678889999999998 88999999853
No 140
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.55 E-value=0.055 Score=33.13 Aligned_cols=29 Identities=21% Similarity=0.533 Sum_probs=22.0
Q ss_pred CCCeEEEEEEcc-cCC-CeEEEEeCCCeeecC
Q psy11558 34 TTGAQVECTARG-SPN-PEIIWIRSDGTAVGD 63 (74)
Q Consensus 34 g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~~ 63 (74)
+..++|.|.|.| .|. =+|+|++ ||.++..
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~~ 45 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLK-NGVPVTD 45 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEE-CCeEccC
Confidence 445899999999 774 4579996 7887643
No 141
>PHA02785 IL-beta-binding protein; Provisional
Probab=95.49 E-value=0.014 Score=42.48 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=23.0
Q ss_pred cCCCCeEEEEEE-----cccCCCeEEEEeCCC
Q psy11558 32 SNTTGAQVECTA-----RGSPNPEIIWIRSDG 58 (74)
Q Consensus 32 ~~g~~v~L~C~A-----~G~P~P~I~W~~~dG 58 (74)
.+|+.+.|.|.+ .|.|.|+|+|.++++
T Consensus 39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~ 70 (326)
T PHA02785 39 LENEPVILPCPQINTLSSGYNILDILWEKRGA 70 (326)
T ss_pred hcCCCEEEECCCccccccCCCCceEEEEECCC
Confidence 467889999997 899999999998543
No 142
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.48 E-value=0.02 Score=29.15 Aligned_cols=23 Identities=35% Similarity=0.980 Sum_probs=19.2
Q ss_pred eEEEEEEcccCCCeEEEEeCCCee
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTA 60 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~ 60 (74)
+.|.|.+.+.|.+.+.|.+ ++..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~-~~~~ 23 (74)
T cd00096 1 VTLTCLASGPPPPTITWLK-NGKP 23 (74)
T ss_pred CEEEEEecCCCCCcEEEEE-CCEE
Confidence 4789999999999999997 4443
No 143
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.43 E-value=0.019 Score=35.52 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=22.3
Q ss_pred ecCCCCeEEEEEEcc-cCC-CeEEEEeCCCeeec
Q psy11558 31 FSNTTGAQVECTARG-SPN-PEIIWIRSDGTAVG 62 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~ 62 (74)
...+..++|.|.|.| .|. =+|+|++ ||..+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~ 45 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWRE-GNSPSI 45 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence 333445999999999 663 3479986 887753
No 144
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.34 E-value=0.047 Score=33.51 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=26.5
Q ss_pred EEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558 22 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS 56 (74)
Q Consensus 22 v~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~ 56 (74)
++. +..+....|++|.|+|...+. ....+.|++.
T Consensus 3 ~q~-~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 3 TQA-QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred EEe-CCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 344 556668889999999999874 5678999985
No 145
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=95.26 E-value=0.073 Score=31.62 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.2
Q ss_pred cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 60 (74)
Q Consensus 18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~ 60 (74)
.|.+..+|. .+ +..|+.|+|.|.+. .|...+.|.+ ||..
T Consensus 2 kP~L~a~p~-~v-V~~G~~VtL~C~~~-~~~~~f~l~k-~g~~ 40 (91)
T cd05751 2 KPSLWAEPS-SV-VPLGKPVTLRCQGP-YGAVEYRLYR-EGST 40 (91)
T ss_pred CCEEEecCC-Cc-cCCCCcEEEEEecC-CCCCEEEEEE-CCCC
Confidence 467777754 33 56788899999997 6899999986 5553
No 146
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.23 E-value=0.05 Score=33.96 Aligned_cols=32 Identities=22% Similarity=0.617 Sum_probs=22.5
Q ss_pred CCCcEEecCCCCeEE-EEE-EcccCCCeEEEEeC
Q psy11558 25 PPNRIDFSNTTGAQV-ECT-ARGSPNPEIIWIRS 56 (74)
Q Consensus 25 Pp~~v~~~~g~~v~L-~C~-A~G~P~P~I~W~~~ 56 (74)
|...+...+|.++.+ .|. |.|.|.++|+|..+
T Consensus 7 ~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 7 PGPSLLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred CCCeeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 344455556666666 665 55999999999964
No 147
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=95.18 E-value=0.057 Score=34.06 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.7
Q ss_pred CcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeec
Q psy11558 27 NRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVG 62 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~ 62 (74)
..+.+..|+++.|.|.....|+|+ +.|.+ ++..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l~ 46 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTLT 46 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCcccC
Confidence 355677899999999999999998 99996 555443
No 148
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=94.84 E-value=0.066 Score=32.82 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=21.7
Q ss_pred CCCCeEEEEEEcc-cC-CCeEEEEeCCCeeec
Q psy11558 33 NTTGAQVECTARG-SP-NPEIIWIRSDGTAVG 62 (74)
Q Consensus 33 ~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~i~ 62 (74)
.|...+|.|.|.| .| .=+|+|++ ||+++.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP 44 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEE-CCEECC
Confidence 3445799999999 56 34579986 888764
No 149
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=94.70 E-value=0.058 Score=31.55 Aligned_cols=33 Identities=18% Similarity=0.568 Sum_probs=28.0
Q ss_pred cCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeC
Q psy11558 24 EPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRS 56 (74)
Q Consensus 24 ~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~ 56 (74)
.+|..+....|+++.|.|... ......+.|.+.
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~ 39 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ 39 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence 356777788999999999999 778889999984
No 150
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=94.62 E-value=0.072 Score=32.81 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=18.1
Q ss_pred CeEEEEEEc-ccCCCeEEEEeC
Q psy11558 36 GAQVECTAR-GSPNPEIIWIRS 56 (74)
Q Consensus 36 ~v~L~C~A~-G~P~P~I~W~~~ 56 (74)
-..+.|.+. |.|.++|+|.++
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcC
Confidence 389999665 999999999975
No 151
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=94.49 E-value=0.062 Score=32.92 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=18.7
Q ss_pred CeEEEEEE-cccCCCeEEEEeC
Q psy11558 36 GAQVECTA-RGSPNPEIIWIRS 56 (74)
Q Consensus 36 ~v~L~C~A-~G~P~P~I~W~~~ 56 (74)
...+.|.| .|.|.++|+|.++
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 17 VTVATCVSANGKPPATISWETT 38 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeC
Confidence 48999999 6999999999974
No 152
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=94.25 E-value=0.61 Score=27.68 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=32.6
Q ss_pred CccceEEEcCCCcEEecCC---CCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558 16 TLGPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68 (74)
Q Consensus 16 ~~~P~fv~~Pp~~v~~~~g---~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r 68 (74)
..+|.++.-+...+..... ....|.++|.|. .+.+.|+. ||+.+......+
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~v-dg~~~g~~~~~~ 61 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFV-DGEPLGTTQPGH 61 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEE-CCEEcccCCCCC
Confidence 3455555544444333321 258899999998 77999996 999985444333
No 153
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=94.10 E-value=0.12 Score=31.93 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCcEEecCCCCeEEEEEEcccC----CCeEEEEeC
Q psy11558 26 PNRIDFSNTTGAQVECTARGSP----NPEIIWIRS 56 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~ 56 (74)
|..+....|++|.|.|..+... ...|.|++.
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 4555677898999999887543 367999764
No 154
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=93.48 E-value=0.096 Score=32.30 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=23.4
Q ss_pred cCCCCeEEEEEE-c----ccCCCeEEEEeCCCeeecC
Q psy11558 32 SNTTGAQVECTA-R----GSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 32 ~~g~~v~L~C~A-~----G~P~P~I~W~~~dG~~i~~ 63 (74)
..|.++.|.|.- . -++.|+|+|++ ||.++..
T Consensus 8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~ 43 (95)
T cd05897 8 FTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDK 43 (95)
T ss_pred ccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcC
Confidence 356679999973 2 34889999996 8888753
No 155
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.29 E-value=0.35 Score=29.48 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=24.6
Q ss_pred eEEEcCCCcEEecCCCCeEEEEEEcc-cCC-CeEEEEeCCCee
Q psy11558 20 IFIKEPPNRIDFSNTTGAQVECTARG-SPN-PEIIWIRSDGTA 60 (74)
Q Consensus 20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~ 60 (74)
+|..-|...- .+ +..++|.|.|.| .|. =+|+|.+ ||..
T Consensus 4 v~~l~~~~~~-~~-~~~~~L~C~a~gFyP~~i~vtW~k-~g~~ 43 (95)
T cd04985 4 VFPLVPCCSS-SS-SDSVTLGCLATGFLPEPVTFTWNS-GSNS 43 (95)
T ss_pred EEEeCCCccc-cC-CCcEEEEEEEeeEECCCcEEEEeE-CCEE
Confidence 3444444332 23 345999999999 563 4579986 7876
No 156
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=93.29 E-value=0.1 Score=30.22 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=20.8
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCC
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSD 57 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~d 57 (74)
|++|+|.|.....+.-.|.|.+.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~ 24 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGK 24 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCC
Confidence 567999999998888899999864
No 157
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=93.21 E-value=0.28 Score=30.41 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=24.0
Q ss_pred ecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558 31 FSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG 62 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~ 62 (74)
+..|++.+|.|.+...+.| .|+|...++..++
T Consensus 11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~ 44 (88)
T cd07694 11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ 44 (88)
T ss_pred eecCCcEEEEEecCCCCCCCccEEEeCCCCccce
Confidence 3467889999999654555 9999987776544
No 158
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=93.13 E-value=0.2 Score=30.46 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=22.1
Q ss_pred ecCCCCeEEEEEEcccC-CCeEEEEeCCC
Q psy11558 31 FSNTTGAQVECTARGSP-NPEIIWIRSDG 58 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~P-~P~I~W~~~dG 58 (74)
+..|+.|+|.|.+.+.. ...+.|++-+.
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~ 31 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQ 31 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECC
Confidence 45788899999998854 56899998643
No 159
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=93.08 E-value=0.16 Score=30.58 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.8
Q ss_pred CCCeEEEEEEcccC------CCeEEEEeC
Q psy11558 34 TTGAQVECTARGSP------NPEIIWIRS 56 (74)
Q Consensus 34 g~~v~L~C~A~G~P------~P~I~W~~~ 56 (74)
|++|+|.|...+.| .++|.|.+.
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 66899999998875 679999986
No 160
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=92.97 E-value=0.23 Score=30.88 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCcEEecCCCCeEEEEEEcccC----CCeEEEEe
Q psy11558 26 PNRIDFSNTTGAQVECTARGSP----NPEIIWIR 55 (74)
Q Consensus 26 p~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~ 55 (74)
+..+.+.+|+++.|.|.-+..+ ...|+|++
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 4667788999999999987544 34699975
No 161
>PHA03052 Hypothetical protein; Provisional
Probab=92.96 E-value=0.46 Score=28.31 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=28.3
Q ss_pred CcEEecCCCCeEEEEEEc---ccCCCeEEEEeCCCeee
Q psy11558 27 NRIDFSNTTGAQVECTAR---GSPNPEIIWIRSDGTAV 61 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~---G~P~P~I~W~~~dG~~i 61 (74)
+.++.+-|+..++.|+|. |...+.|.|. .||..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~-~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWI-SNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEE-eCCcEE
Confidence 677788899999999997 4457889998 588888
No 162
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=92.72 E-value=0.88 Score=28.30 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=24.4
Q ss_pred EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558 23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS 56 (74)
Q Consensus 23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~ 56 (74)
++|+ .+.+..|+.|+|+|..++.- ...+.|++-
T Consensus 2 ~~~~-~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 2 VESG-PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred ccCC-CeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 3443 44577898999999987754 567999975
No 163
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=92.53 E-value=0.51 Score=28.30 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=26.4
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG 58 (74)
|.+...| ..+ +..|+.|+|.|.+.- +.=.+.|.+++.
T Consensus 2 P~l~a~p-~~v-V~~G~~VTL~C~~~~-~~~~f~l~k~g~ 38 (94)
T cd05711 2 PFLSAHP-SPV-VPSGENVTLQCHSDI-RFDRFILYKEGR 38 (94)
T ss_pred CEEEecC-CCc-cCCCCeEEEEEecCC-CCCEEEEEECCC
Confidence 5666664 443 567888999998876 666799997443
No 164
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.50 E-value=0.26 Score=30.77 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=24.7
Q ss_pred eEEEcCCCcEEecCCCCeEEEEEEcc-c-C-CCeEEEEeCCC
Q psy11558 20 IFIKEPPNRIDFSNTTGAQVECTARG-S-P-NPEIIWIRSDG 58 (74)
Q Consensus 20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G-~-P-~P~I~W~~~dG 58 (74)
+++. ||..-+...+..++|.|.+.| . | .=+|+|.++++
T Consensus 6 V~l~-pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~ 46 (99)
T cd04986 6 LSLQ-RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGG 46 (99)
T ss_pred EEEE-CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCc
Confidence 4455 344333334557999999999 5 6 34699997543
No 165
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=92.34 E-value=0.27 Score=34.32 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=25.2
Q ss_pred cEEecCCCCeEEEEEEc-ccCCCeEEEEeCCC
Q psy11558 28 RIDFSNTTGAQVECTAR-GSPNPEIIWIRSDG 58 (74)
Q Consensus 28 ~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG 58 (74)
.+++.+|++|+|.|.-. +...+.|+|++.++
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~ 55 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNK 55 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCC
Confidence 45677888999999984 77799999998654
No 166
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=91.91 E-value=0.77 Score=27.89 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=21.9
Q ss_pred ecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558 31 FSNTTGAQVECTARGSPNPEIIWIRSD 57 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~P~P~I~W~~~d 57 (74)
+..|+.|+|+|...+.-...+.|++-.
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 356888999999987666779999864
No 167
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=91.14 E-value=0.37 Score=28.86 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=19.2
Q ss_pred CCCeEEEEEEcccC------CCeEEEEeCC
Q psy11558 34 TTGAQVECTARGSP------NPEIIWIRSD 57 (74)
Q Consensus 34 g~~v~L~C~A~G~P------~P~I~W~~~d 57 (74)
|++|+|.|.....| ...|.|.+.+
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 66799999988764 4679999864
No 168
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=90.59 E-value=0.63 Score=28.82 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=23.8
Q ss_pred CCCcEEecCCCCeEEEEEEcccC------CCeEEEEeCC
Q psy11558 25 PPNRIDFSNTTGAQVECTARGSP------NPEIIWIRSD 57 (74)
Q Consensus 25 Pp~~v~~~~g~~v~L~C~A~G~P------~P~I~W~~~d 57 (74)
.|+.+....|+.|+|.|.-.-.+ .-.+.|++.+
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 35666788899999999765321 3569999864
No 169
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=90.56 E-value=0.63 Score=29.39 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=22.3
Q ss_pred CcEEecCCCCeEEEEEEccc----CCCeEEEEe
Q psy11558 27 NRIDFSNTTGAQVECTARGS----PNPEIIWIR 55 (74)
Q Consensus 27 ~~v~~~~g~~v~L~C~A~G~----P~P~I~W~~ 55 (74)
..+....|+++.|.|.-+.. +..+|+|.+
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 44556788899999999774 457999944
No 170
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=89.90 E-value=0.38 Score=28.14 Aligned_cols=23 Identities=17% Similarity=0.536 Sum_probs=18.6
Q ss_pred CeEEEEEEcccC---CCeEEEEeCCC
Q psy11558 36 GAQVECTARGSP---NPEIIWIRSDG 58 (74)
Q Consensus 36 ~v~L~C~A~G~P---~P~I~W~~~dG 58 (74)
+|.|.|...+.+ ...|.|.+.++
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~ 27 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITG 27 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECC
Confidence 589999999875 55799998654
No 171
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=89.36 E-value=0.67 Score=27.30 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=22.4
Q ss_pred EecCCCCeEEEEEEcc-cCCCeEEEEeCC
Q psy11558 30 DFSNTTGAQVECTARG-SPNPEIIWIRSD 57 (74)
Q Consensus 30 ~~~~g~~v~L~C~A~G-~P~P~I~W~~~d 57 (74)
....|++++|.|.... .+...+.|.+.+
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 4567888999999876 468889999864
No 172
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=89.30 E-value=0.85 Score=29.43 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=22.0
Q ss_pred EcCCCcEEecCCCCeEEEEEEcccCCCe---EEEEeC
Q psy11558 23 KEPPNRIDFSNTTGAQVECTARGSPNPE---IIWIRS 56 (74)
Q Consensus 23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~---I~W~~~ 56 (74)
.++...+. ..|.+++|.|+++|.=..+ ++|+|.
T Consensus 3 ~~~~~~lv-~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 3 VQQSPVLA-SSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred eecCCeEE-cCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 34444443 4455799999998866544 888873
No 173
>KOG3515|consensus
Probab=88.90 E-value=0.4 Score=39.35 Aligned_cols=31 Identities=13% Similarity=0.438 Sum_probs=24.9
Q ss_pred cEEecCCCCeEEEEEEcccC-CCeEEEEeCCC
Q psy11558 28 RIDFSNTTGAQVECTARGSP-NPEIIWIRSDG 58 (74)
Q Consensus 28 ~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG 58 (74)
+..+..|++|.|.|.+.|+| .+++.|++++-
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~ 47 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTS 47 (741)
T ss_pred ChhhccCCcceeeeecCCCCCCcceEEEecCc
Confidence 33567888999999999887 67899998643
No 174
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=88.87 E-value=0.85 Score=28.86 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=19.3
Q ss_pred eEEEEE-EcccCCCeEEEEeC-CCe
Q psy11558 37 AQVECT-ARGSPNPEIIWIRS-DGT 59 (74)
Q Consensus 37 v~L~C~-A~G~P~P~I~W~~~-dG~ 59 (74)
+.-.|. |.|.|+.+|+|.-+ +|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~ 47 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGE 47 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCc
Confidence 788999 88999999999865 454
No 175
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=88.42 E-value=0.76 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=18.7
Q ss_pred CCCeEEEEEEcccC------------CCeEEEEeC
Q psy11558 34 TTGAQVECTARGSP------------NPEIIWIRS 56 (74)
Q Consensus 34 g~~v~L~C~A~G~P------------~P~I~W~~~ 56 (74)
|++++|.|.-...+ .+.|.|.+-
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 66799999998654 579999975
No 176
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=88.24 E-value=1.3 Score=27.95 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=23.2
Q ss_pred ceEEEcCCCcEEecCCCCeEEEEEEcc-cCC--CeEEEEe
Q psy11558 19 PIFIKEPPNRIDFSNTTGAQVECTARG-SPN--PEIIWIR 55 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~--P~I~W~~ 55 (74)
|.+...++ ...|..+++.|.|.| .|. .+|.|.+
T Consensus 4 p~i~~~~~----l~~G~~vtv~C~v~~v~P~~~l~v~Llk 39 (99)
T cd07689 4 PEILLSGP----LEEGKPVTVKCEVPDVYPFDRLEIELLK 39 (99)
T ss_pred ccCcccCc----ccCCceEEEEEEecCcccCCceEEEEec
Confidence 44444444 357888999999995 454 6799986
No 177
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=88.21 E-value=1.4 Score=27.35 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=18.9
Q ss_pred ecCCCCeEEEEEEcccCCC--eEEEEeC
Q psy11558 31 FSNTTGAQVECTARGSPNP--EIIWIRS 56 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~P~P--~I~W~~~ 56 (74)
..+|.++.|+| ++.|.+ .++|++.
T Consensus 10 ~~~G~~V~L~v--~~~p~~~~~~~W~kg 35 (105)
T cd05774 10 VAEGENVLLLV--HNLPENLLAYAWYKG 35 (105)
T ss_pred ccCCCCEEEEe--cCCCCCceEEEEEcC
Confidence 35788899997 556777 9999984
No 178
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=88.02 E-value=0.52 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=17.8
Q ss_pred EEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558 29 IDFSNTTGAQVECTARGSPNPEIIWIRSD 57 (74)
Q Consensus 29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~d 57 (74)
|.++ |++|+|.|.-.+.. |.|.+++
T Consensus 3 Vsis-GTtVtlTCP~~~~~---i~W~~n~ 27 (65)
T cd07692 3 VSIS-GTTVTVTCPLSGDD---IKWKKND 27 (65)
T ss_pred EEEe-ccEEEEECCCCCCC---ceEEeCC
Confidence 4454 66799999866433 9999754
No 179
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=87.94 E-value=0.95 Score=27.89 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=19.4
Q ss_pred CCCeEEEEEEcccCC----------CeEEEEeCC
Q psy11558 34 TTGAQVECTARGSPN----------PEIIWIRSD 57 (74)
Q Consensus 34 g~~v~L~C~A~G~P~----------P~I~W~~~d 57 (74)
|++|+|.|..+.++. ..|.|.+.+
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~ 35 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLS 35 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEec
Confidence 668999999988763 669999863
No 180
>smart00406 IGv Immunoglobulin V-Type.
Probab=87.56 E-value=1 Score=24.77 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=17.5
Q ss_pred eEEEEEEcccCCC--eEEEEeCC
Q psy11558 37 AQVECTARGSPNP--EIIWIRSD 57 (74)
Q Consensus 37 v~L~C~A~G~P~P--~I~W~~~d 57 (74)
|.|.|...+...+ .+.|.+..
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~ 24 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQP 24 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeC
Confidence 7899999987765 89999854
No 181
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=86.90 E-value=1.7 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=17.0
Q ss_pred CCCeEEEEEEcccC---CCeEEEEeCCC
Q psy11558 34 TTGAQVECTARGSP---NPEIIWIRSDG 58 (74)
Q Consensus 34 g~~v~L~C~A~G~P---~P~I~W~~~dG 58 (74)
|++|.|.|.-.+.. ...|.|.+.+.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~ 28 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQF 28 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCC
Confidence 45799999986432 23688987553
No 182
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=86.48 E-value=1.3 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.407 Sum_probs=17.9
Q ss_pred CCCeEEEEEEcccCCC-eEEEEeCCC
Q psy11558 34 TTGAQVECTARGSPNP-EIIWIRSDG 58 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P-~I~W~~~dG 58 (74)
|++|+|.|.-...... .|.|.+.++
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~ 26 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQG 26 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCC
Confidence 5679999986654333 599998654
No 183
>PHA03376 BARF1; Provisional
Probab=85.63 E-value=0.64 Score=33.11 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=22.0
Q ss_pred CCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558 34 TTGAQVECTARGSPNPEIIWIRSDGT 59 (74)
Q Consensus 34 g~~v~L~C~A~G~P~P~I~W~~~dG~ 59 (74)
-.--.+.|...|-|.|.++|..++|.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccCC
Confidence 33478999999999999999987775
No 184
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=81.44 E-value=2.4 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=17.3
Q ss_pred CCCeEEEEEEcccC-------CCeEEEEeC
Q psy11558 34 TTGAQVECTARGSP-------NPEIIWIRS 56 (74)
Q Consensus 34 g~~v~L~C~A~G~P-------~P~I~W~~~ 56 (74)
|+++.|.|.-+-.| .|.|+|.+.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 55799999955333 589999974
No 185
>KOG3515|consensus
Probab=77.04 E-value=5.1 Score=33.15 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=28.9
Q ss_pred CeEEEEEEcccCCCeEEEEeCCCeeecCCCCceEEEE
Q psy11558 36 GAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72 (74)
Q Consensus 36 ~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r~~~~ 72 (74)
.++.+|.|.|.|.+..+|.+ ++.+....+.++.+-|
T Consensus 611 ~as~~~~a~~~~~~~~~~~k-~p~~~~~~~~~~~~~~ 646 (741)
T KOG3515|consen 611 NASDDCVASGVPSTSFTTAK-TPLQTTEGPHIREKAT 646 (741)
T ss_pred cccccceecccccceeeccc-CCCcccCCceEEEeee
Confidence 49999999999999999985 7777667776665433
No 186
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=76.72 E-value=2.2 Score=25.51 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=19.6
Q ss_pred CCCCeEEEEEEcc-cCCCeEEEEeC
Q psy11558 33 NTTGAQVECTARG-SPNPEIIWIRS 56 (74)
Q Consensus 33 ~g~~v~L~C~A~G-~P~P~I~W~~~ 56 (74)
.|++|+|.|...- ...-.|.|++.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~ 27 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFN 27 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecC
Confidence 4778999998865 66778999975
No 187
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=76.14 E-value=5.3 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEecCCCCeEEEEEE------c-----ccCCCeEEEEeC
Q psy11558 29 IDFSNTTGAQVECTA------R-----GSPNPEIIWIRS 56 (74)
Q Consensus 29 v~~~~g~~v~L~C~A------~-----G~P~P~I~W~~~ 56 (74)
..+.+|+.+.|.|.. + -++.-+|+|.++
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~ 48 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKS 48 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEEC
Confidence 445678889999997 1 223458999984
No 188
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=68.67 E-value=8.5 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=18.0
Q ss_pred CCCeEEEEEEcccCC-----------CeEEEEeC
Q psy11558 34 TTGAQVECTARGSPN-----------PEIIWIRS 56 (74)
Q Consensus 34 g~~v~L~C~A~G~P~-----------P~I~W~~~ 56 (74)
|++++|.|.-+-.|. +.|+|.+-
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~ 35 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKI 35 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEe
Confidence 456999999997662 48999874
No 189
>PHA03112 IL-18 binding protein; Provisional
Probab=63.04 E-value=11 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=20.0
Q ss_pred CCCCeEEEEEEccc-CC-CeEEEEeCC
Q psy11558 33 NTTGAQVECTARGS-PN-PEIIWIRSD 57 (74)
Q Consensus 33 ~g~~v~L~C~A~G~-P~-P~I~W~~~d 57 (74)
+++.+.|+|.|-+. |. --+-|...|
T Consensus 37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 37 ETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCEEEEEEECccCCCCceEEEEEcCC
Confidence 45569999999987 74 678999665
No 190
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=61.94 E-value=13 Score=22.03 Aligned_cols=40 Identities=33% Similarity=0.533 Sum_probs=25.1
Q ss_pred CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558 14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57 (74)
Q Consensus 14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d 57 (74)
++...|..+-+-+-.+....|.-+.+.- +.|.|.| |.+-|
T Consensus 23 SD~~~P~Yife~~GEvl~ikgdYa~vr~---~~PtP~v-WLr~d 62 (67)
T PF11910_consen 23 SDPRPPSYIFEGPGEVLDIKGDYAQVRF---RVPTPDV-WLRLD 62 (67)
T ss_pred cCCCCCcceecCCCeEEEecCCEEEEEe---cCCCCch-hhhhh
Confidence 4555565555544544455565566653 8899999 98644
No 191
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=52.72 E-value=30 Score=21.03 Aligned_cols=20 Identities=20% Similarity=0.649 Sum_probs=14.7
Q ss_pred CeEEEEEEcccCCC-----eEEEEeC
Q psy11558 36 GAQVECTARGSPNP-----EIIWIRS 56 (74)
Q Consensus 36 ~v~L~C~A~G~P~P-----~I~W~~~ 56 (74)
+|.|.|.=.. +.| +|+|.+.
T Consensus 2 ~v~L~C~f~~-~~~~~~~~~V~W~k~ 26 (99)
T cd05886 2 DVVLHCSFIN-PLPPVKITQVTWQKL 26 (99)
T ss_pred cEEEEeEeec-CCCCCCeEEEEEEEC
Confidence 5899999874 333 6999875
No 192
>KOG4597|consensus
Probab=52.43 E-value=10 Score=30.28 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=23.8
Q ss_pred ecCCCCeEEEEEEcccCCCeEEEEeC--CCee
Q psy11558 31 FSNTTGAQVECTARGSPNPEIIWIRS--DGTA 60 (74)
Q Consensus 31 ~~~g~~v~L~C~A~G~P~P~I~W~~~--dG~~ 60 (74)
+..+++.+++|-+.|.|.|.|+|-+- |+..
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~ 239 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANREN 239 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccc
Confidence 45666799999999999999999643 5543
No 193
>KOG1026|consensus
Probab=49.91 E-value=15 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=21.5
Q ss_pred cCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558 32 SNTTGAQVECTARGSPNPEIIWIRS 56 (74)
Q Consensus 32 ~~g~~v~L~C~A~G~P~P~I~W~~~ 56 (74)
..+..+++.|++.|.|.|.+.|+..
T Consensus 205 ~~~~~~~~~c~~~~~~vp~~~~~~~ 229 (774)
T KOG1026|consen 205 EEGSSITLKCSQAGIPVPCHYWFPN 229 (774)
T ss_pred cccchheeeeecccCCCcceeeecc
Confidence 3455699999999999999999964
No 194
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=48.77 E-value=24 Score=20.96 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=16.2
Q ss_pred CeEEEEEEcccC---CCeEEEEeC
Q psy11558 36 GAQVECTARGSP---NPEIIWIRS 56 (74)
Q Consensus 36 ~v~L~C~A~G~P---~P~I~W~~~ 56 (74)
+|.|.|.=.-.+ .-.|+|.+.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEc
Confidence 589999887554 448999974
No 195
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=48.60 E-value=59 Score=19.59 Aligned_cols=36 Identities=19% Similarity=0.563 Sum_probs=24.0
Q ss_pred cCCCcEEecCCCCeEEEEEEc-----ccCCCeEEEEeCCCeee
Q psy11558 24 EPPNRIDFSNTTGAQVECTAR-----GSPNPEIIWIRSDGTAV 61 (74)
Q Consensus 24 ~Pp~~v~~~~g~~v~L~C~A~-----G~P~P~I~W~~~dG~~i 61 (74)
.|+..+ +..|+.++..|.-. +.....|-|+. |+..+
T Consensus 9 ~p~~pv-v~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~i 49 (89)
T PF06328_consen 9 SPPSPV-VSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKI 49 (89)
T ss_dssp ECSSSE-EETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCES
T ss_pred ecCCCE-EeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEEC
Confidence 345554 56788899999887 34778899997 55543
No 196
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=48.41 E-value=28 Score=20.63 Aligned_cols=22 Identities=18% Similarity=0.585 Sum_probs=15.6
Q ss_pred CeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 36 GAQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 36 ~v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+|.|.|.+. -+|+|++ |..+..
T Consensus 8 ~V~L~C~~~----tsi~W~k--G~~~~~ 29 (69)
T cd07691 8 KVFLKCNGA----TNITWKK--GKEILE 29 (69)
T ss_pred eEEEEecCC----CcEEEec--Cccccc
Confidence 599999762 4599996 554443
No 197
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=40.09 E-value=41 Score=20.38 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=16.7
Q ss_pred CeEEEEEEccc-CCCeEEEEeCCC
Q psy11558 36 GAQVECTARGS-PNPEIIWIRSDG 58 (74)
Q Consensus 36 ~v~L~C~A~G~-P~P~I~W~~~dG 58 (74)
+++|.|.-... ...+|+|.+.++
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~ 25 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNG 25 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCC
Confidence 58899987632 367788998754
No 198
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=37.82 E-value=37 Score=20.86 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=19.7
Q ss_pred EcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEe
Q psy11558 23 KEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIR 55 (74)
Q Consensus 23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~ 55 (74)
..| +...+..|+++.++|+.+= |+|. +.|-.
T Consensus 8 v~P-~~~vV~~G~Sv~VNCStsC-~~p~~~GLET 39 (91)
T PF03921_consen 8 VSP-EEPVVPPGGSVWVNCSTSC-PQPEKIGLET 39 (91)
T ss_dssp EES-SEEEEETTEEEEEEEEESS-SS-SEEEEES
T ss_pred EEC-CccEECCCCCEEEEEcCCC-CCCCcceEEE
Confidence 344 4445677888999999853 6664 45543
No 199
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=36.43 E-value=78 Score=17.46 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.7
Q ss_pred CCCCeEEEEEEcc-cCCCeEEEEeCCCee
Q psy11558 33 NTTGAQVECTARG-SPNPEIIWIRSDGTA 60 (74)
Q Consensus 33 ~g~~v~L~C~A~G-~P~P~I~W~~~dG~~ 60 (74)
.+..+.|.+...+ .....++|.+.||..
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~ 41 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTS 41 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCc
Confidence 3556888888776 456788999888854
No 200
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=36.16 E-value=61 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=22.6
Q ss_pred cCCCccceEEEcCCCcEEecCCCCeEEEEEEcc
Q psy11558 13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARG 45 (74)
Q Consensus 13 ~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G 45 (74)
....-+-.|+-+|.+.+++.-. .+.++|.+.|
T Consensus 77 pq~~Ca~y~iaePd~~IeI~~~-~vdidC~~G~ 108 (311)
T PF05428_consen 77 PQLVCAAYFIAEPDELIEIEFD-HVDIDCEGGD 108 (311)
T ss_pred CCceeEEEEEeCCCeEEEEEEE-EeeccCCCCC
Confidence 3334466899998877766543 5999999865
No 201
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=35.92 E-value=59 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=16.3
Q ss_pred CeEEEEEEcccCCC--eEEEEeC
Q psy11558 36 GAQVECTARGSPNP--EIIWIRS 56 (74)
Q Consensus 36 ~v~L~C~A~G~P~P--~I~W~~~ 56 (74)
.+.|.|.|.|-=+. +++|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 47999999996444 4679975
No 202
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=33.92 E-value=40 Score=22.09 Aligned_cols=26 Identities=8% Similarity=0.232 Sum_probs=16.3
Q ss_pred CCeEEEEEEccc-----CCCeEEEEeCCCeee
Q psy11558 35 TGAQVECTARGS-----PNPEIIWIRSDGTAV 61 (74)
Q Consensus 35 ~~v~L~C~A~G~-----P~P~I~W~~~dG~~i 61 (74)
++|.|+|.+..- +.=.|+|++ +|..|
T Consensus 28 ~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~I 58 (130)
T PF08204_consen 28 DTVVIPCFVNNLEANNISEMYVKWKF-KNKDI 58 (130)
T ss_dssp SEEEE--BBSS---SSGGGEEEEEEE-TTEEE
T ss_pred CCEEEEeEeccccccccceEEEEEEE-CCeEE
Confidence 359999999862 333499998 56654
No 203
>PRK14051 negative regulator GrlR; Provisional
Probab=33.88 E-value=41 Score=21.92 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=17.6
Q ss_pred cCCCCeEEEEEEcccCCCeEEE
Q psy11558 32 SNTTGAQVECTARGSPNPEIIW 53 (74)
Q Consensus 32 ~~g~~v~L~C~A~G~P~P~I~W 53 (74)
+++.+++|+|.+.|+-.=.|.-
T Consensus 81 sn~~~~~l~~HV~~Nekl~vdv 102 (123)
T PRK14051 81 SNDNNLTLHCHVRGNEKLFVDV 102 (123)
T ss_pred eCCCCeEEEEEEcCCcEEEEEE
Confidence 4677799999999998766653
No 204
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=31.94 E-value=76 Score=19.22 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=16.5
Q ss_pred CeEEEEEEcccC-CCeEEEEeCCC
Q psy11558 36 GAQVECTARGSP-NPEIIWIRSDG 58 (74)
Q Consensus 36 ~v~L~C~A~G~P-~P~I~W~~~dG 58 (74)
++.|.|.=...+ ...|+|.+.++
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~ 25 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHG 25 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCC
Confidence 489999987533 45799987643
No 205
>PF01681 C6: C6 domain; InterPro: IPR002601 This domain of unknown function is found at the C terminus in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins. It may be an extracellular domain. Most copies of the C6 domain contain six conserved cysteine residues. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge. In Q19522 from SWISSPROT there are 18 copies of the domain.
Probab=30.63 E-value=58 Score=19.27 Aligned_cols=21 Identities=24% Similarity=0.681 Sum_probs=16.4
Q ss_pred eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558 37 AQVECTARGSPNPEIIWIRSDGTAVGD 63 (74)
Q Consensus 37 v~L~C~A~G~P~P~I~W~~~dG~~i~~ 63 (74)
+.|.|.+.| .|....|..|+.
T Consensus 69 ~~ltCn~~g------~W~y~~g~~Its 89 (92)
T PF01681_consen 69 ITLTCNADG------QWVYTYGRVITS 89 (92)
T ss_pred EEEEecCCC------EEEECCCEEEEE
Confidence 889998888 498657777754
No 206
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.84 E-value=75 Score=19.09 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=12.0
Q ss_pred eEEEEEEcccCCCe
Q psy11558 37 AQVECTARGSPNPE 50 (74)
Q Consensus 37 v~L~C~A~G~P~P~ 50 (74)
-.+.|.++|.|.|-
T Consensus 29 sfV~CAVtgk~IPl 42 (77)
T COG3908 29 SFVLCAVTGKPIPL 42 (77)
T ss_pred cEEEEEecCCcccH
Confidence 47889999999884
No 207
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=27.63 E-value=1.5e+02 Score=21.08 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=29.8
Q ss_pred CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCe
Q psy11558 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGT 59 (74)
Q Consensus 16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~ 59 (74)
...|.....|.-++.|.+ ...-|.|.=.|.. +++|..+|+.
T Consensus 74 ~~~P~Vy~~P~vsv~F~~---g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 74 TATPSVYPKPRVSVRFED---GYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred ccccceecCCEEEEEecC---CEEEEEcceeeCCCeEEEEEECCcc
Confidence 346677777766777743 4788999998855 8999986653
No 208
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=27.10 E-value=2.8e+02 Score=22.81 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=30.2
Q ss_pred ceEEEcCCCcEEecCC-----CCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558 19 PIFIKEPPNRIDFSNT-----TGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65 (74)
Q Consensus 19 P~fv~~Pp~~v~~~~g-----~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~ 65 (74)
|..+..|++...+... ....|.+.|.| ....+.|+. ||.++...+
T Consensus 644 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~W~~-dg~~~~~~~ 693 (727)
T TIGR02073 644 SLIISPPLDGIYILRDPDGPKAALLLVLIAAG-GASGLYWFL-DGKLLGEAL 693 (727)
T ss_pred CcEEecCCCCcEEecCCCCCcccceEEEEecC-CCCceEEEE-CCEEecccC
Confidence 5556665555444322 23678888887 778899996 899986543
No 209
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=26.58 E-value=1.2e+02 Score=16.69 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=18.7
Q ss_pred CCCeEEEEEEccc-CCCeEEEEeCCC
Q psy11558 34 TTGAQVECTARGS-PNPEIIWIRSDG 58 (74)
Q Consensus 34 g~~v~L~C~A~G~-P~P~I~W~~~dG 58 (74)
+..+.++....+. ....++|.+.||
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgdg 39 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGDG 39 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCCC
Confidence 4567787777764 567889999887
No 210
>PF10094 DUF2332: Uncharacterized protein conserved in bacteria (DUF2332); InterPro: IPR011200 This is a family of uncharacterised bacterial proteins.
Probab=23.66 E-value=72 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred CCCCeEEEEEEcccC----CCeEEEEeCCCeeecC
Q psy11558 33 NTTGAQVECTARGSP----NPEIIWIRSDGTAVGD 63 (74)
Q Consensus 33 ~g~~v~L~C~A~G~P----~P~I~W~~~dG~~i~~ 63 (74)
.++.++|.|...|.+ .|.|.|.. |-.+++
T Consensus 168 ~~s~v~l~~~~~G~~pp~~~p~V~~R~--G~Dl~P 200 (343)
T PF10094_consen 168 ADSPVRLSPEWRGPPPPLPDPEVVSRA--GCDLNP 200 (343)
T ss_pred CCCCcEecccccCCCCCCCCCceEEEE--ecCCCC
Confidence 344599999999986 46788875 655554
No 211
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.50 E-value=75 Score=17.14 Aligned_cols=13 Identities=38% Similarity=0.859 Sum_probs=11.2
Q ss_pred eEEEEEEcccCCC
Q psy11558 37 AQVECTARGSPNP 49 (74)
Q Consensus 37 v~L~C~A~G~P~P 49 (74)
....|.++|.+-|
T Consensus 6 ~~V~CAVTg~~Ip 18 (42)
T PF09866_consen 6 SFVRCAVTGQPIP 18 (42)
T ss_pred CEEEEEeeCCccc
Confidence 5789999999877
No 212
>PF11386 VERL: Vitelline envelope receptor for lysin; InterPro: IPR021526 VERL, the egg vitelline envelope (VE) receptor for lysin, is a giant unbranched glycoprotein comprising 30% of the vitelline envelope. Lysin binds to VERL and creates a hole as VERL molecules lose cohesion and splay apart. These proteins are important in the mediation of fertilisation [].
Probab=21.99 E-value=78 Score=19.20 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=10.7
Q ss_pred eEEEEEEcccCC
Q psy11558 37 AQVECTARGSPN 48 (74)
Q Consensus 37 v~L~C~A~G~P~ 48 (74)
.+++|-..|+|.
T Consensus 61 ~si~C~v~ks~~ 72 (78)
T PF11386_consen 61 LSIECYVPKSPT 72 (78)
T ss_pred eEEEEeccCCCC
Confidence 899999999883
Done!