RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11558
(74 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 68.4 bits (167), Expect = 1e-15
Identities = 42/59 (71%), Positives = 50/59 (84%)
Query: 11 AAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
+ D GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 31 PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 89
Score = 39.1 bits (91), Expect = 2e-05
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
P +I EP ++ + A+VEC A G P P++ W ++ G G+ L+K I
Sbjct: 715 PRWILEPTDKAFAQGSD-AKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNI 768
Score = 37.2 bits (86), Expect = 1e-04
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
P+ + + ++C A G+P PEI W DG + +
Sbjct: 430 PVIRQAFQEETMEPGPS-VFLKCVAGGNPTPEISWEL-DGKKIAN 472
Score = 35.7 bits (82), Expect = 5e-04
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
+PP + A C G+P + W++ DG A+G
Sbjct: 344 LSAKIDPPTQTVDFGRP-AVFTCQYTGNPIKTVSWMK-DGKAIGHSES 389
Score = 34.9 bits (80), Expect = 7e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
G +I++ + + T V C G P I+W R +
Sbjct: 525 YGLPYIRQMEKKAIVAGET-LIVTCPVAGYPIDSIVWERDNR 565
Score = 34.1 bits (78), Expect = 0.001
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
+ + +S ++ + C A+G P P W +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIE 287
Score = 30.3 bits (68), Expect = 0.031
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAV 61
P I + C+ G P I W DG A+
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL-DGQAI 661
Score = 24.5 bits (53), Expect = 3.8
Identities = 3/44 (6%), Positives = 10/44 (22%), Gaps = 4/44 (9%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTA---RGSPNPEIIWIRSDGT 59
+ + + A ++C + W +
Sbjct: 139 QYYEADVNKEHVIRGNS-AVIKCLIPSFVADFVEVVSWHTDEEE 181
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 67.3 bits (164), Expect = 3e-15
Identities = 41/52 (78%), Positives = 48/52 (92%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 54
Score = 37.6 bits (87), Expect = 9e-05
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
+PP + A C G+P + W++ DG A+G
Sbjct: 308 LSAKIDPPTQTVDFGRP-AVFTCQYTGNPIKTVSWMK-DGKAIGHSES 353
Score = 37.2 bits (86), Expect = 1e-04
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 4 SLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
+ RL + + P ++ + C A+G P P W +
Sbjct: 197 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex,
receptor protein tyrosine phosphatase; HET: NAG; 2.00A
{Mus musculus} PDB: 3jxa_A*
Length = 384
Score = 54.1 bits (130), Expect = 1e-10
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
GP+F++EP + + ++ +V C +G+P P I W +GT V R
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFR 56
Score = 39.8 bits (93), Expect = 1e-05
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 6 LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
L L P + P + T ++EC A G+P P I+W R+DG +
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247
Score = 36.0 bits (83), Expect = 4e-04
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P +++ + + EC A G P P W++
Sbjct: 296 PNWVQIINDIHVAMEES-VFWECKANGRPKPTYRWLK 331
Score = 29.8 bits (67), Expect = 0.055
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGT 59
F + + G + C S WI ++
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP 143
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 53.3 bits (128), Expect = 2e-10
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 16 TLGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
+ GP+F ++P + + + +V C AR +P W +GT + P R
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSR 55
Score = 37.5 bits (87), Expect = 9e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
P + P +EC A G+P P+I W + DG+
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS 247
Score = 36.0 bits (83), Expect = 3e-04
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P ++ + + + C A G P P + W+R
Sbjct: 295 PDWLDVITDTEADIGSD-LRWSCVASGKPRPAVRWLR 330
Score = 31.0 bits (70), Expect = 0.021
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGT 59
F E + + + G C+ P W+ ++
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFP 142
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 44.5 bits (105), Expect = 3e-07
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P K+ +EC A+G+P P W R + R
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPR 65
Score = 37.9 bits (88), Expect = 6e-05
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
P ++ EP N I ++ C A G+P P + W+ +G + P +
Sbjct: 313 PYWLDEPKNLILAPGED-GRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNRE 363
Score = 34.1 bits (78), Expect = 0.002
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 19 PIFIKEPPNRIDFSNTTG--AQVECTARGSPNPEIIWIRSDG 58
P F+ G +EC A G P P+I W + G
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 261
Score = 31.4 bits (71), Expect = 0.014
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAV 61
P++ KE + + ++C G P+P I W+ S +
Sbjct: 116 PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI 159
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 41.7 bits (98), Expect = 1e-06
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF 74
P ++ P + I A + C A G P P I W + D R ++ +
Sbjct: 10 PRIVEHPSDLIVSKGEP-ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 42.3 bits (99), Expect = 1e-06
Identities = 7/53 (13%), Positives = 12/53 (22%), Gaps = 1/53 (1%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
+ V CT P+P + W+ +G
Sbjct: 105 LTLSVHSERSQFPDFSV-LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM 156
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 41.5 bits (97), Expect = 2e-06
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
F++ P ++ + + ++ C A GSP PEI W
Sbjct: 22 AGFVQAPLSQQRWVGGS-VELHCEAVGSPVPEIQWWFEGQG 61
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 41.7 bits (98), Expect = 3e-06
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P FI+ + ++C G+P I W + + T + P +
Sbjct: 6 PYFIEPLEHVEAAIGEP-ITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYK 53
Score = 37.5 bits (87), Expect = 1e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P+F K+P +EC +G+P ++ W + D +
Sbjct: 385 PVFRKKPHPVETLKGAD-VHLECELQGTPPFQVSWHK-DKREL 425
Score = 35.5 bits (82), Expect = 5e-04
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P FIK+ + EC GSP +++W + D T + + R
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFR 339
Score = 35.2 bits (81), Expect = 7e-04
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
P F+K+ + Q++ T G+ + W + G
Sbjct: 478 PRFVKKLSDISTVVGEE-VQLQATIEGAEPISVAWFKDKG 516
Score = 34.0 bits (78), Expect = 0.001
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
P F +P + + +C G+ +I W + +
Sbjct: 198 PFFDLKPVSVDLALGES-GTFKCHVTGTAPIKITWAKDNR 236
Score = 33.6 bits (77), Expect = 0.002
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P + + EC GS ++ W + DG + D L+
Sbjct: 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQ 149
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 40.6 bits (95), Expect = 6e-06
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKY 70
P I+ P + + N A + C G P P I W + DG V
Sbjct: 10 PRIIEHPTDLVVKKNEP-ATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHR 59
Score = 32.5 bits (74), Expect = 0.005
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 16 TLGPIFIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGTAVGDVPGLR 68
L F EP + T A +EC +G P P +IWI+ DG + D+ +
Sbjct: 106 VLRDDFRVEPKDTRVAKGET-ALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMS 157
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 40.9 bits (96), Expect = 6e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P FIK+ + EC GSP +++W + D T + + R
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFR 147
Score = 35.9 bits (83), Expect = 4e-04
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F +P + + +C G+ +I W + D +
Sbjct: 6 PFFDLKPVSVDLALGES-GTFKCHVTGTAPIKITWAK-DNREI 46
Score = 35.1 bits (81), Expect = 5e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P+F K+P +EC +G+P ++ W + D +
Sbjct: 193 PVFRKKPHPVETLKGAD-VHLECELQGTPPFQVSWHK-DKREL 233
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 40.5 bits (95), Expect = 7e-06
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
F + + A+V C SP P + W+ V + R
Sbjct: 97 LTFREVVSPQEFKQGED-AEVVCRVSSSPAPAVSWLY-HNEEVTTISDNR 144
Score = 30.9 bits (70), Expect = 0.018
Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
+ CTA G P + G +
Sbjct: 3 LQVTISLSKVELSVGES-KFFTCTAIGEPESIDWYNP-QGEKI 43
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 40.7 bits (95), Expect = 7e-06
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
+G + + + ++ C G +P + W G V
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV 49
Score = 30.7 bits (69), Expect = 0.023
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAV 61
P A + C+ GSP E W + DG +
Sbjct: 108 PSKPTVNIPSSATIGNR-AVLTCSEQDGSPPSEYTWFK-DGIVM 149
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 40.3 bits (94), Expect = 7e-06
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKY 70
+ N + ++ CT G +P + W G+ V +
Sbjct: 2 GSVYTAQSDVQVPENES-IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQI 52
Score = 29.9 bits (67), Expect = 0.042
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
P A + C+ GSP E W + DG ++ + ++
Sbjct: 105 PSKPTISVPSSVTIGNR-AVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFM 158
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 40.7 bits (95), Expect = 8e-06
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 1 MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 60
+ + +T P+ + + + + C +P + + +G
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV-TMIYCMYGSNPMGYPNYFK-NGKD 252
Query: 61 VGDVPGLRKYKY 72
V P R ++
Sbjct: 253 VNGNPEDRITRH 264
Score = 39.5 bits (92), Expect = 2e-05
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
P+ +P + F +EC G+ + DG + +
Sbjct: 6 YPVLKDQPAEVL-FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR 58
Score = 38.0 bits (88), Expect = 7e-05
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P + ++P I + C G P P ++W
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH 345
Score = 27.2 bits (60), Expect = 0.42
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGT 59
+ + Q++C P P I W +
Sbjct: 101 IASPAKTHEKTPIEGRP-FQLDCVLPNAYPKPLITWKKRLSG 141
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 40.2 bits (94), Expect = 8e-06
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
+F P + A + C S P IIW G V +R
Sbjct: 101 LMFKNAPTPQEFKEGED-AVIVCDVVSSLPPTIIWKH-KGRDVILKKDVR 148
Score = 33.7 bits (77), Expect = 0.002
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 22 IKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAV 61
++ + ++ + G V C A G P P + W + DG +
Sbjct: 197 VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPI 237
Score = 30.2 bits (68), Expect = 0.034
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAV 61
P + C G + +I W +G +
Sbjct: 3 LQVDIVPSQGEISVGES-KFFLCQVAGDAKDKDISWFSPNGEKL 45
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 40.0 bits (93), Expect = 1e-05
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
P + T+ ++ C A G P E+IW SD
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQ 156
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 40.2 bits (94), Expect = 1e-05
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
F + + A+V C SP P + W+ V + R
Sbjct: 99 LTFREVVSPQEFKQGED-AEVVCRVSSSPAPAVSWLY-HNEEVTTISDNR 146
Score = 34.8 bits (80), Expect = 8e-04
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 19 PIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAV 61
P I P + + G ++ C A GSP P I W R +G +
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLI 235
Score = 31.3 bits (71), Expect = 0.012
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
++ + + ++++ S CTA G P I W G +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKI 45
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 39.0 bits (91), Expect = 2e-05
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
P ++ P + I A + C A G P P I W + G V + +
Sbjct: 10 PRIVEHPSDLIVSKGEP-ATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRM 62
Score = 31.3 bits (71), Expect = 0.014
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 16 TLGPIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAV 61
L F + P + + A +EC RG P P I W + DG+ +
Sbjct: 109 ILRDDFRQNPSDVMVAVGEP-AVMECQPPRGHPEPTISWKK-DGSPL 153
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 39.0 bits (91), Expect = 2e-05
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 6 LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
L + + P+ + P R+ T + C A G+P P I WI+ + T V
Sbjct: 98 LTIYEGDKTPAGFPVITQGPGTRVIEVGHT-VLMTCKAIGNPTPNIYWIK-NQTKV 151
Score = 35.2 bits (81), Expect = 6e-04
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
P I++P N+ A C ARG P P I+W + +G V
Sbjct: 7 PEIIRKPQNQGVRVGGV-ASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYT 55
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 38.3 bits (89), Expect = 4e-05
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
P + A + C + G P+PE +W + V + ++
Sbjct: 93 PDITGHKRSENKNEGQD-AMMYCKSVGYPHPEWMWRK-KENGVFEEISNSSGRF 144
Score = 29.0 bits (65), Expect = 0.080
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEI--IWIRSDGTAV 61
P + I S ++C S + + W + +G +
Sbjct: 4 PRIVTSEEVIIRDSLLP-VTLQCNLTSSSHTLMYSYWTK-NGVEL 46
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 38.6 bits (90), Expect = 4e-05
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
P + P N A + CT G+P P + WI+ D
Sbjct: 101 PKITRPPINVKIIEGLK-AVLPCTTMGNPKPSVSWIKGDS 139
Score = 35.9 bits (83), Expect = 3e-04
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
P+ A C P PEI W R + +
Sbjct: 8 PVITTPLETVDALVEEV-ATFMCAVESYPQPEISWTR-NKILIKLFDT 53
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 38.2 bits (89), Expect = 4e-05
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
F + + A+V C SP P + W+ V + R
Sbjct: 3 LTFREVVSPQEFKQGED-AEVVCRVSSSPAPAVSWLY-HNEEVTTISDNR 50
Score = 34.0 bits (78), Expect = 0.002
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 19 PIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAV 61
P I P + + G ++ C A GSP P I W R +G +
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLI 139
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 38.3 bits (89), Expect = 5e-05
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
+F P + A + C S P IIW G V +R
Sbjct: 101 LMFKNAPTPQEFKEGED-AVIVCDVVSSLPPTIIWKH-KGRDVILKKDVR 148
Score = 32.9 bits (75), Expect = 0.004
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAV 61
+ P++ + S C G + +I W +G +
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKL 45
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 38.2 bits (89), Expect = 5e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F + + + +T A E G P PE+ W R DG +
Sbjct: 6 PTFTQPLQSVVVLEGST-ATFEAHISGFPVPEVSWFR-DGQVI 46
Score = 35.5 bits (82), Expect = 4e-04
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F++ + + +++ G P P + + R DG +
Sbjct: 104 PNFVQRLQSMTVRQGSQ-VRLQVRVTGIPTPVVKFYR-DGAEI 144
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 38.2 bits (88), Expect = 6e-05
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 6 LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
+ E+ P+ + ++ + Q+ C G + W +G+ + +
Sbjct: 196 IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDD 254
Query: 66 GLRKYKYI 73
+ Y
Sbjct: 255 PVLGEDYY 262
Score = 25.5 bits (55), Expect = 1.7
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 23 KEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGT 59
+E + S C + + I W + D
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSK 46
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 37.9 bits (88), Expect = 6e-05
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 7 RLTMAAEDDTLG--PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
+LT+ ED P P ++ T A + C A G+P+PEI W + D V
Sbjct: 95 KLTVLREDQLPSGFPNIDMGPQLKVVERTRT-ATMLCAASGNPDPEITWFK-DFLPVDPS 152
Query: 65 PGLRKYK 71
+ K
Sbjct: 153 ASNGRIK 159
Score = 37.1 bits (86), Expect = 1e-04
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P FIKEP ++I S A C A G P P + W + G V
Sbjct: 7 PRFIKEPKDQIGVSGGV-ASFVCQATGDPKPRVTWNK-KGKKV 47
Score = 36.0 bits (83), Expect = 4e-04
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F P + + C A GSP P + W++ +
Sbjct: 206 PRFSILPMSHEIMPGGN-VNITCVAVGSPMPYVKWMQ-GAEDL 246
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 38.1 bits (88), Expect = 6e-05
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 11 AAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
+++ P + + ++C A G P P I W GT
Sbjct: 398 DVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRC 450
Score = 28.1 bits (62), Expect = 0.19
Identities = 8/44 (18%), Positives = 10/44 (22%), Gaps = 3/44 (6%)
Query: 19 PIFIKEPPNRIDFSNTTG--AQVECTARGSPNPEII-WIRSDGT 59
P G + P PE WI + T
Sbjct: 311 GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRT 354
Score = 28.1 bits (62), Expect = 0.19
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDG 58
P+ + + V CT + + W R +
Sbjct: 212 PVVSVSKASYLLREGEE-FTVTCTIKDVSSSVYSTWKRENS 251
Score = 23.9 bits (51), Expect = 7.2
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 20 IFIKEPPN-RIDFSNTTG-----AQVECTARGSPNPEIIWIRSDGTAVGD 63
+F+++P + + G V C G +
Sbjct: 109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK 158
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 37.5 bits (87), Expect = 7e-05
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 6 LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
L + + P P ++ T A + C A G+P+PEI W + D V
Sbjct: 96 LTVLREDQIPRGFPTIDMGPQLKVVERTRT-ATMLCAASGNPDPEITWFK-DFLPVDTSN 153
Query: 66 GLRKYKYIF 74
+ K +
Sbjct: 154 NNGRIKQLR 162
Score = 35.9 bits (83), Expect = 3e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F + P ++ S A C A G P P+I+W + G V
Sbjct: 7 PRFTRTPVDQTGVSGGV-ASFICQATGDPRPKIVWNK-KGKKV 47
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 36.5 bits (85), Expect = 8e-05
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P FI+ P N +++ G P P++ W +G V
Sbjct: 6 PRFIQVPENMSIDEGRF-CRMDFKVSGLPAPDVSWYL-NGRTV 46
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 36.5 bits (85), Expect = 8e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P N+ + +V CTA G+P P+I+W + D + + G+
Sbjct: 11 PTITGNLENQTTSIGES-IEVSCTASGNPPPQIMWFK-DNETLVEDSGIV 58
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 37.5 bits (87), Expect = 8e-05
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
G + P ++ C+ G P+I W++ DG V ++ L
Sbjct: 2 GLKLMGAPVKLTVSQGQP-VKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLY 50
Score = 34.0 bits (78), Expect = 0.002
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDVP 65
P F EP + N Q+ C A G P P I+W R T +G
Sbjct: 99 PFFTVEPKDLAVPPNAP-FQLSCEAVGPPEPVTIVWWR-GTTKIGGPA 144
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 36.2 bits (84), Expect = 9e-05
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
PI ++ P N+ + T A ++C A G P P I W++ T
Sbjct: 9 PIILQGPANQTLAVDGT-ALLKCKATGDPLPVISWLKEGFT 48
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 36.1 bits (84), Expect = 1e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
P+ + + S++ A+ A G P P IW + DG A+
Sbjct: 7 PVIVTGLQDTTVSSDSV-AKFAVKATGEPRPTAIWTK-DGKAITQ 49
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 36.2 bits (84), Expect = 1e-04
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
P+FI +P ++ + ++EC P P++ W R++
Sbjct: 16 PMFIYKPQSKKVLEGDS-VKLECQISAIPPPKLFWKRNNEM 55
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 36.8 bits (85), Expect = 1e-04
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF 74
P F K + + A+ +C G P+PE++W + D V R ++ +
Sbjct: 42 PYFTKTILDMEVVEGSA-ARFDCKVEGYPDPEVMWFK-DD---NPVKESRHFQIDY 92
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 35.8 bits (83), Expect = 1e-04
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F++ P S A+++C G P P ++W + G +
Sbjct: 14 PCFLRFPRPVRVVSGAE-AELKCVVLGEPPPVVVWEK-GGQQL 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 36.6 bits (85), Expect = 2e-04
Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 1/62 (1%)
Query: 1 MYLSLLRLTMAAED-DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
+ ++ Q C A G P P I+W+
Sbjct: 366 KEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKH 425
Query: 60 AV 61
V
Sbjct: 426 LV 427
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 36.7 bits (85), Expect = 2e-04
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
F++ P N I A +EC G P P W+R +
Sbjct: 222 LYFLQRPSNVIAIEGKD-AVLECCVSGYPPPSFTWLRGEE 260
Score = 36.4 bits (84), Expect = 2e-04
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
F+ + + F T ++C G P P I W + + + +PG +
Sbjct: 122 LRFLSQTESITAFMGDT-VLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDSRVV 172
Score = 35.6 bits (82), Expect = 4e-04
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGDVPGLRKY 70
F+ EP + + + C+A P I W + DG + RK
Sbjct: 22 LHFVSEPSDAVTMRGGN-VLLNCSAESDRGVPVIKWKK-DGLILALGMDDRKQ 72
Score = 35.2 bits (81), Expect = 6e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F+ P N + + + EC G P P + W++ +G V
Sbjct: 313 PWFLNHPSNLYAYESMD-IEFECAVSGKPVPTVNWMK-NGDVV 353
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.9 bits (83), Expect = 2e-04
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P+ + P N+ + T + C A GSP P I+W + DG V
Sbjct: 9 PVIRQGPVNQTVAVDGT-FVLSCVATGSPVPTILWRK-DGVLV 49
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 35.1 bits (81), Expect = 2e-04
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
+ EP T + C P+P+I W++ DG + P
Sbjct: 11 VQLVVEPEGGAVAPGGT-VTLTCEVPAQPSPQIHWMK-DGVPLPLPPS 56
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 35.4 bits (82), Expect = 2e-04
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
+ +P + + + A+ C G P P + W+R G +
Sbjct: 15 ARILTKPRSMTVYEGES-ARFSCDTDGEPVPTVTWLR-KGQVL 55
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 35.4 bits (82), Expect = 2e-04
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F++ P + +++C G P P++ W DG V
Sbjct: 10 PHFLQAPGDLTVQEGKL-CRMDCKVSGLPTPDLSWQL-DGKPV 50
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 36.0 bits (83), Expect = 3e-04
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
+ + + +EC A G+P P+I W +
Sbjct: 114 ADIVVQFKDVYALMGQN-VTLECFALGNPVPDIRWRKVLE 152
Score = 24.5 bits (53), Expect = 3.3
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEII--WIRSDGTAVGDVPGLRKY 70
F E + G + C ++ W+ + V R++
Sbjct: 10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPVFITMDKRRF 60
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 36.2 bits (83), Expect = 3e-04
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
+++ ++ T Q+ C ARG P E+ W A
Sbjct: 103 ASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSH 148
Score = 27.7 bits (61), Expect = 0.29
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 37 AQVECTARGSPNPEIIWIRSDGTAVGDVP 65
+EC E+ IR+ V +
Sbjct: 20 VSLECDFDRRECTELEGIRASLQKVENDT 48
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 35.9 bits (83), Expect = 3e-04
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 7 RLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
L + P ++ ++ G P+P I W + +
Sbjct: 93 SLEVEVPAKIHLPKTLEGMGAVHALRGEV-VSIKIPFSGKPDPVITWQK-GQDLI 145
Score = 35.9 bits (83), Expect = 3e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P F +E N + A + C G P P + W R G +
Sbjct: 5 PHFKEELRNLNVRYQSN-ATLVCKVTGHPKPIVKWYR-QGKEI 45
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 36.1 bits (83), Expect = 3e-04
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
GP P + + + C A +P + W +GT L
Sbjct: 202 GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELF 251
Score = 34.5 bits (79), Expect = 0.001
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
GP P+ + + C A +P + W+ DG L
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQELF 429
Score = 33.4 bits (76), Expect = 0.003
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
I PP+ S + C + +P+P+ W +G
Sbjct: 560 DTPIISPPDSSYLSGAN-LNLSCHSASNPSPQYSWRI-NGIPQQH 602
Score = 29.2 bits (65), Expect = 0.077
Identities = 4/40 (10%), Positives = 8/40 (20%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
P N + C +W ++
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQ 149
Score = 27.2 bits (60), Expect = 0.38
Identities = 4/37 (10%), Positives = 6/37 (16%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P N + C +W
Sbjct: 467 PKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWV 502
Score = 24.9 bits (54), Expect = 2.6
Identities = 4/40 (10%), Positives = 9/40 (22%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
P N + + C +W ++
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQ 327
Score = 24.5 bits (53), Expect = 3.6
Identities = 1/16 (6%), Positives = 2/16 (12%)
Query: 40 ECTARGSPNPEIIWIR 55
W +
Sbjct: 20 LVHNLPQHLFGYSWYK 35
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 35.6 bits (82), Expect = 4e-04
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 2 YLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
Y RL AA + + P+ + + C G P PE+ W++ + A+
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKAL 158
Score = 23.7 bits (51), Expect = 6.1
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 36 GAQVECT-ARGSPNPEIIWIRSDGTAV 61
G Q+ + ++ W +G+A+
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSH-NGSAI 44
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 35.8 bits (82), Expect = 4e-04
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
++ P N + C + P P + W+ D
Sbjct: 141 LLYTLRRPYFRKMENQD--ALVCISESVPEPIVEWVLCDS 178
Score = 34.6 bits (79), Expect = 0.001
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 17 LGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGT 59
+ FI + D+ + + P W S +
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Score = 34.6 bits (79), Expect = 0.001
Identities = 4/51 (7%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
+ E ++ + ++ N +W+ +++ P
Sbjct: 48 SSGTVYEAAA-VEVDVSASITLQVLVDAPGNISCLWVF-KHSSLNCQPHFD 96
Score = 28.1 bits (62), Expect = 0.19
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 37 AQVECTA-RGSPNPEIIWIRSDGTAV 61
+ C A + + W + A+
Sbjct: 245 LWIRCKAVHVNHGFGLTWEL-ENKAL 269
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 35.7 bits (82), Expect = 4e-04
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 2 YLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
Y RL AA + + P+ + + C G P PE+ W++ + A+
Sbjct: 205 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKAL 263
Score = 26.0 bits (57), Expect = 1.3
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARG----------SPNPEIIWIRSDGTAV 61
+ E +I S T +++ TA G + ++ W +G+A+
Sbjct: 99 KELMMEVCKKIALSATD-LKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAI 149
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 35.7 bits (82), Expect = 4e-04
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 7 RLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
L + + P N+ + + C P I W++
Sbjct: 103 TLDVLERSPHRPILQAGLPANQTAVLGSD-VEFHCKVYSDAQPHIQWLKHVE 153
Score = 35.7 bits (82), Expect = 4e-04
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 19 PIFIKEPPNRI-DFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
P + + + V C A G+P P I W++ +G + K
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLR 68
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 35.4 bits (82), Expect = 5e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P KE + AQ+ C G P P+I W R G +
Sbjct: 8 PGIRKEMKDVTTKLGEA-AQLSCQIVGRPLPDIKWYR-FGKEL 48
Score = 32.7 bits (75), Expect = 0.005
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSD 57
P F P + + G+ + G P P + W
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQ 141
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 35.3 bits (81), Expect = 5e-04
Identities = 7/39 (17%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
+ P N + C P I WI+
Sbjct: 119 ILQAGLPANASTVVGGD-VEFVCKVYSDAQPHIQWIKHV 156
Score = 34.5 bits (79), Expect = 9e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 19 PIFIKEPPNR-IDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
P + + V C A G+P P + W++ +G + YK
Sbjct: 16 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKV 71
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 34.7 bits (79), Expect = 5e-04
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
DD P +P + + C+A S + + +
Sbjct: 6 DDFPXPQITVQPETQSAIXGSD-VSFTCSAASSSDSPMTF 44
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 35.5 bits (81), Expect = 5e-04
Identities = 4/53 (7%), Positives = 12/53 (22%), Gaps = 1/53 (1%)
Query: 16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
L + + + + + +P + G + L
Sbjct: 94 QLLVFGLTANSDTHLLQGQS-LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 145
Score = 32.5 bits (73), Expect = 0.005
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 37 AQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
++ CTA + + W S+ + G K
Sbjct: 12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK 46
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 35.3 bits (81), Expect = 5e-04
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDVPG 66
P F++EP +R +NT + C A+G P P +++W++ D + PG
Sbjct: 107 PYFLEEPEDRTVAANTP-FNLSCQAQGPPEPVDLLWLQ-DAVPLATAPG 153
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 34.2 bits (79), Expect = 6e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P F + ++C+ RG+P P I W+
Sbjct: 12 PSFSSVLKDCAVIEGQD-FVLQCSVRGTPVPRITWLL 47
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 35.1 bits (80), Expect = 6e-04
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
P + PN + C G + WI ++ V
Sbjct: 159 PTLKVQVPNASVDVGDD-VLLRCQVEGRGLEQAGWILTELEQSATV 203
Score = 28.2 bits (62), Expect = 0.20
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
+ + + G P P + W+ +
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGS 285
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 34.0 bits (78), Expect = 7e-04
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAV 61
+ E CTA+ SP ++W R +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 35.1 bits (80), Expect = 7e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P N+ + +V CTA G+P P+I+W + D +
Sbjct: 667 PTITGNLENQTTSIGES-IEVSCTASGNPPPQIMWFK-DNETL 707
Score = 33.2 bits (75), Expect = 0.003
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 19 PIFIKEPPNRIDFSNTTG--AQVECTARGSPNPEIIWIRSDGTAV 61
P T G ++ G P PEI W + +G +
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPL 371
Score = 32.4 bits (73), Expect = 0.007
Identities = 7/61 (11%), Positives = 15/61 (24%), Gaps = 5/61 (8%)
Query: 11 AAEDDTLGPIFIKEPPNRIDFSNTT-----GAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
+ + + P + + CTA S + W + +
Sbjct: 536 VGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595
Query: 66 G 66
G
Sbjct: 596 G 596
Score = 32.4 bits (73), Expect = 0.007
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
+ P + I+ S + CTAR N I +
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 258
Score = 28.6 bits (63), Expect = 0.13
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 19 PIFIKEPPNRIDFSNTTG--AQVECTARGSPNPEII-WIRSDGTAVGDVPG 66
P ++ S G + CT P P I W + P
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471
Score = 28.2 bits (62), Expect = 0.23
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
P + + ++ T RG + + +W +
Sbjct: 32 PRLSIQKD---ILTIKANTTLQITCRGQRDLDWLWPNNQ 67
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 34.9 bits (80), Expect = 7e-04
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
P EP + AQ+ C+A + + ++ T +
Sbjct: 187 PQIKLEPSKLVRIRGEA-AQIVCSATNAEVGFNVILKRGDTKL 228
Score = 30.3 bits (68), Expect = 0.031
Identities = 5/46 (10%), Positives = 10/46 (21%), Gaps = 2/46 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGD 63
+ A + C + + +R G V
Sbjct: 90 HSWNLLAQEVTVVEGQE-AVLPCLITDPALKDSVSLMREGGRQVLR 134
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 34.6 bits (79), Expect = 8e-04
Identities = 5/57 (8%), Positives = 14/57 (24%), Gaps = 1/57 (1%)
Query: 12 AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
E+ L + + + + + +P + G + L
Sbjct: 91 KEEVQLLVFGLTANSDTHLLQGQS-LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 146
Score = 33.0 bits (75), Expect = 0.003
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 37 AQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
++ CTA + + W S+ + G K
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK 47
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 33.8 bits (78), Expect = 8e-04
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P F ++ + +G P P + W+R
Sbjct: 6 PTFKVSLMDQSVREGQD-VIMSIRVQGEPKPVVSWLR 41
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 34.6 bits (79), Expect = 9e-04
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62
P P + AQ+ C+A ++++ + T +
Sbjct: 187 PALTLVPAELVRIRGEA-AQIVCSASSVDVNFDVFLQHNNTKLA 229
Score = 30.3 bits (68), Expect = 0.028
Identities = 5/46 (10%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGD 63
+ + F + A + C + +R G +
Sbjct: 90 RPWNVLAQEVVVFEDQD-ALLPCLLTDPVLEAGVSLVRVRGRPLMR 134
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 34.7 bits (79), Expect = 0.001
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
+ I+ P ++ + +Q C + G P P W + +
Sbjct: 410 LNIRRKP-QVLAEASA-SQASCFSDGYPLPSWTWKKCSDKSPNC 451
Score = 33.9 bits (77), Expect = 0.002
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
++ P N + C + P P + W+ D
Sbjct: 141 LLYTLRRPYFRKMENQD--ALVCISESVPEPIVEWVLCDS 178
Score = 33.5 bits (76), Expect = 0.002
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 21 FIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGT 59
FI + D+ + + P W S +
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Score = 32.4 bits (73), Expect = 0.006
Identities = 4/54 (7%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
+ E ++ + ++ N +W+ +++ P
Sbjct: 48 SSGTVYEAAA-VEVDVSASITLQVLVDAPGNISCLWVF-KHSSLNCQPHFDLQN 99
Score = 27.4 bits (60), Expect = 0.34
Identities = 3/24 (12%), Positives = 7/24 (29%), Gaps = 1/24 (4%)
Query: 37 AQVECTA-RGSPNPEIIWIRSDGT 59
+ C A + + W +
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKA 268
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 34.7 bits (80), Expect = 0.001
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
P F +E N + A + C G P P + W R
Sbjct: 5 PHFKEELRNLNVRYQSN-ATLVCKVTGHPKPIVKWYRQGK 43
Score = 29.7 bits (67), Expect = 0.051
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 6/47 (12%)
Query: 22 IKEPPNRIDFSNTTG-----AQVECTARGSPNPEIIWIRSDGTAVGD 63
I P ++ G P+P I W + + +
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDN 147
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 33.8 bits (78), Expect = 0.001
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
P + ++ + A G P+PE W + +G + + Y
Sbjct: 6 PKIFERIQSQTVGQGSD-AHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWP 57
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 34.4 bits (79), Expect = 0.001
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 10 MAAEDDTLGPIFIKEPPNRIDFSNTTG-----AQVECTARGSPNPEIIWIRSD 57
A ED+ + + P+ I N T + C A G P PEI W R+
Sbjct: 80 KAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAV 132
Score = 33.6 bits (77), Expect = 0.002
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
++ N C A GSP P I W R +G +
Sbjct: 5 ISMPQKSFNATAERGEE-MTFSCRASGSPEPAISWFR-NGKLI 45
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 33.6 bits (77), Expect = 0.001
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 22 IKEPPNRIDFSNTT---GAQVECTARGSPNPEIIWIRSDGTAV 61
+ P + T + T +G+P P + W +G +
Sbjct: 1 VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFY-NGAIL 42
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 33.4 bits (77), Expect = 0.001
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P P + V C G P PE+ W G + R
Sbjct: 6 PKIEALPSDISIDEGKV-LTVACAFTGEPTPEVTWSC-GGRKIHSQEQGR 53
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 34.3 bits (78), Expect = 0.001
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 8 LTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTAR---GSPNPEIIWIRSDGTAVGD 63
L + + + P+ I P I S + + C G+P ++W ++ T +
Sbjct: 216 LRIKKKKEETIPVII-SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIES 273
Score = 30.0 bits (67), Expect = 0.036
Identities = 5/46 (10%), Positives = 9/46 (19%), Gaps = 6/46 (13%)
Query: 19 PIFIKEPPNRIDFSNTT------GAQVECTARGSPNPEIIWIRSDG 58
+ A SP + W ++D
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64
Score = 29.7 bits (66), Expect = 0.051
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVEC-----TARGSPNPEIIWIRSD 57
F+ + +T + C R + +I W +
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS 163
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 34.1 bits (78), Expect = 0.002
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
G P ++ + ++ C A G P + W + +
Sbjct: 18 GSKITVNPESKAVLAGQF-VKLCCRATGHPFVQYQWFK-MNKEI 59
Score = 33.7 bits (77), Expect = 0.002
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
EP ++ +T ++C A GSP P W + + +
Sbjct: 119 LQICVEPTSQKLMPGST-LVLQCVAVGSPIPHYQWFK-NELPL 159
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 33.3 bits (76), Expect = 0.002
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 22 IKEPPNRIDFSNTT---GAQVECTARGSPNPEIIWIRSDGTAV 61
+ PP + +E RG+P P + W+ +G +
Sbjct: 5 VYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLH-NGQPL 46
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 32.7 bits (75), Expect = 0.002
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
P F + + F C G+P P+I W + DG + +
Sbjct: 9 PFFEMKLKHYKIFEGMP-VTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQR 60
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 33.4 bits (76), Expect = 0.003
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 7 RLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
L + + P N+ + + C P I W++
Sbjct: 211 TLDVLERSPHRPILQAGLPANQTAVLGSD-VEFHCKVYSDAQPHIQWLKHV 260
Score = 32.7 bits (74), Expect = 0.005
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 19 PIFIKEPPNRI-DFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAV 61
P + + + V C A G+P P I W++ +G
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREF 164
Score = 28.4 bits (63), Expect = 0.17
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAV 61
P ++ F + ++ C G P +W++ DGT +
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGL 50
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 32.9 bits (75), Expect = 0.003
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
I + N + N + C A G P PEI W R+
Sbjct: 4 IIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVD 39
Score = 30.5 bits (69), Expect = 0.024
Identities = 5/34 (14%), Positives = 8/34 (23%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
+ C + +P I W R
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 32.9 bits (74), Expect = 0.004
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
+ ++ P + + C A G+P PE+ ++ DGT +
Sbjct: 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-DGTFPLPIGESVT 419
Score = 27.1 bits (59), Expect = 0.43
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 3/47 (6%)
Query: 25 PPNRIDFSNTT---GAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
P + + G +V P ++ +G L
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLL 330
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 31.9 bits (73), Expect = 0.004
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
EP ++ +T ++C A GSP P W + + +
Sbjct: 4 LQICVEPTSQKLMPGST-LVLQCVAVGSPIPHYQWFK-NELPL 44
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 31.9 bits (73), Expect = 0.004
Identities = 4/35 (11%), Positives = 8/35 (22%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P + + + P E+ W
Sbjct: 9 PRITLRMRSHRVPCGQN-TRFILNVQSKPTAEVKW 42
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 31.6 bits (72), Expect = 0.006
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 19 PIFIKEPPNRI-DFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
P + + V C A G+P P + W++ +G + YK
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKV 60
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 32.3 bits (73), Expect = 0.006
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
+ +K + S N ++ +I + +
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEI 149
Score = 27.6 bits (61), Expect = 0.26
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
F KE +D EC +P E W + D + D
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSK-DYVSTED 45
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 31.7 bits (71), Expect = 0.009
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 37 AQVECTARGSPNPEIIWIRSDGTAVGDVP 65
+ C+ G +P W + +
Sbjct: 19 VSLTCSTTGCESPFFSWRTQIDSPLNGKV 47
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 31.8 bits (71), Expect = 0.010
Identities = 3/40 (7%), Positives = 7/40 (17%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
+ + + C N + W
Sbjct: 137 NVHVSTAEVVQVDEGND-ITMTCPCTDCANANVTWYTGPT 175
Score = 26.0 bits (56), Expect = 1.0
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 37 AQVECT---ARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
++ C+ A + P I W++ Y +
Sbjct: 20 VELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNW 58
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle,
IGI, thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 31.3 bits (70), Expect = 0.014
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 19 PIFIKEPPNRI--DFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGD 63
P + P RI G ++ + G P P +IW ++
Sbjct: 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKA 62
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 31.2 bits (70), Expect = 0.016
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
GP + +++ +Q C A G+P PE+ ++ DGT +
Sbjct: 183 GPRLDERDCPG-NWTWPENSQQTPMCQAWGNPLPELKCLK-DGTFPLPIGESVT 234
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 31.0 bits (69), Expect = 0.019
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 6 LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVE--CTAR----GSPNPEIIWIRSDGT 59
L + + P I P + + + G ++ CT E+ W DG
Sbjct: 211 LTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGK 269
Query: 60 AVGDVPGLRKY 70
D+
Sbjct: 270 KPDDITIDVTI 280
Score = 28.7 bits (63), Expect = 0.14
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 13 EDDTLGPIFIKEPPNRIDFSNTTGA----QVECTARGSPNPEIIWIR 55
+ D+ +K P +++ V+ S P I W
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 30.7 bits (69), Expect = 0.020
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
F K + S N ++ +I + +
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEI 44
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 30.8 bits (69), Expect = 0.021
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 24 EPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAV 61
+ + G +EC + G P P+I W + G +
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 30.8 bits (69), Expect = 0.023
Identities = 4/40 (10%), Positives = 8/40 (20%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
I + + + C G+ W
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220
Score = 28.9 bits (64), Expect = 0.100
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 3/47 (6%)
Query: 21 FIKEPPNRIDFSNTTG--AQVECTARGSPNPEIIWIRSDGTAVGDVP 65
F+ + T + C P + G VP
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVP 140
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 29.6 bits (67), Expect = 0.026
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
I +I +E G+P+P W D
Sbjct: 5 ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGD 40
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 30.5 bits (68), Expect = 0.031
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 21 FIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGT 59
+ + A + C AR +P P W + G
Sbjct: 219 VSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGP 258
Score = 28.5 bits (63), Expect = 0.13
Identities = 8/42 (19%), Positives = 10/42 (23%), Gaps = 2/42 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGT 59
P E C + G P +I W G
Sbjct: 118 PQNTAEVQKVQLTGEPV-PMARCVSTGGRPPAQITWHSDLGG 158
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 29.7 bits (67), Expect = 0.032
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 37 AQVECTARGSPNPEIIWIRSDGTAV 61
+ +G P P+++W + G +
Sbjct: 42 LNLVVPFQGKPRPQVVWTK-GGAPL 65
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 29.7 bits (67), Expect = 0.035
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 19 PIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAV 61
+I P ++ + +V C P E+ W + DG V
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEV 53
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 29.7 bits (66), Expect = 0.051
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGT 59
P E + + ++ C A +P E W +G+
Sbjct: 232 PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 29.3 bits (65), Expect = 0.052
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS 56
P + I+ S + CTAR N I +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 45
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 29.8 bits (67), Expect = 0.053
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 9 TMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
+ + ++ P + + C P+ I W R
Sbjct: 9 ALVPRGSHMYAPKLQGPVAVYTWEGNQ-VNITCEVFAYPSATISWFR 54
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 29.7 bits (66), Expect = 0.058
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 20 IFIKEPPNRI----DFSNTTG--AQVECTARGSPNPEIIWIRSDGTAV 61
+F+++P A V C + I DG ++
Sbjct: 86 VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL 133
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 29.7 bits (67), Expect = 0.059
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
I EPP ++ + A+++C A + + WI +GT +
Sbjct: 344 IVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVM 382
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 28.8 bits (65), Expect = 0.071
Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
P I+ P ++ + + ++ G+ W++ + +
Sbjct: 8 PQIIQFPEDQKVRAGES-VELFGKVTGTQPITCTWMK-FRKQIQE 50
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.7 bits (64), Expect = 0.10
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSD 57
GP I + Q++C R +P P+ I W +
Sbjct: 13 GPPIISSTQTQHALHGEK-GQIKCFIRSTPPPDRIAWSWKE 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 28.6 bits (64), Expect = 0.12
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
I + P ++ S A+++C P + W+ +GT +
Sbjct: 355 IMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVL 392
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 28.5 bits (63), Expect = 0.15
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 25 PPNRIDFSNTTG--AQVECTAR-GSPNPEIIWIRSDGTAVGDVP 65
+D S G +++C + GS + W + + P
Sbjct: 125 TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP 168
Score = 25.0 bits (54), Expect = 2.2
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNP----EIIWIRSDGTAVGDVPGLRKYK 71
I P RI+ + A + C SP +I W+ S + Y
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYS 56
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 27.9 bits (61), Expect = 0.20
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 11 AAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
D I + P ++ S TT V T P EI+W + +
Sbjct: 106 DGSDGNEEMGGITQTPYKVSISGTT---VILTCPQYPGSEILWQH-NDKNI 152
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 27.6 bits (61), Expect = 0.25
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 39 VECTARGSPNPEIIWIR 55
+ + G P P + W+
Sbjct: 20 IPFSVDGQPAPSLRWLF 36
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 27.1 bits (60), Expect = 0.27
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 37 AQVECTARGSPNPEIIWIRSDGT--AVGDVPGLRKYKY 72
A + C + N + W D LR +
Sbjct: 24 AILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 27.4 bits (60), Expect = 0.32
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
+ P + I+ S + CTAR N I +
Sbjct: 105 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 27.3 bits (60), Expect = 0.35
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 29 IDFSNTTGAQVECTARG-SPNPEIIWIRSDGT 59
+ + ++ C+ G P P + W+ +
Sbjct: 116 FEIPTSNIRRIICSTSGGFPEPHLSWLENGEE 147
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 27.3 bits (60), Expect = 0.36
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 40 ECTARGSPNPEIIWIRSDGTA--VGDVPGLRKYKY 72
+C N + W+ G + + P L+ KY
Sbjct: 22 KCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKY 56
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 27.2 bits (60), Expect = 0.40
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
+ +P + SN T + C + E+ +
Sbjct: 101 VSKPMIYWECSNAT---LTCEVLEGTDVELKLYQ 131
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 27.3 bits (60), Expect = 0.41
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 25 PPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDG 58
++ + C + G P +I W G
Sbjct: 122 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 156
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 26.7 bits (59), Expect = 0.44
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
P + + Q+ C R I W+R DG + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLVE 51
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 27.1 bits (60), Expect = 0.45
Identities = 4/51 (7%), Positives = 11/51 (21%), Gaps = 2/51 (3%)
Query: 20 IFIKEPPNRIDFSNTTG--AQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
F + G + C + ++ S+ +
Sbjct: 245 FFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGS 295
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 26.5 bits (59), Expect = 0.49
Identities = 3/41 (7%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSD 57
G + + + + + C ++ W
Sbjct: 1 GAMVSGQIMHAVGEEGGH-VKYVCKIENYDQSTQVTWYFGV 40
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 26.8 bits (59), Expect = 0.56
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 22 IKEPPNR--IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
I+E ++ I ++ + C +PE+ + DG +
Sbjct: 102 IQERVSKPKISWTCIN-TTLTCEVMNGTDPELNLYQ-DGKHL 141
Score = 25.2 bits (55), Expect = 2.0
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 23 KEPPNRIDFSNTTGA----QVECTARGSPNPEIIWIRSDGTAV 61
KE N ++ G + +I W ++
Sbjct: 1 KEITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKK 43
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 26.2 bits (58), Expect = 0.60
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
I++ + ++ A C + + W D T +
Sbjct: 14 VHIIEDLEDVDVQEGSS-ATFRCRISPANYEPVHWFL-DKTPL 54
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 26.8 bits (58), Expect = 0.69
Identities = 7/55 (12%), Positives = 11/55 (20%), Gaps = 4/55 (7%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECT---ARGSPNPEIIWIRSDGTAVGDVPGLRKY 70
P P + + C + W+ S L Y
Sbjct: 6 PGLTVSSPQLRVHVGES-VLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYY 59
Score = 26.0 bits (56), Expect = 1.3
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEII---WIRSDGTAVGDVPGLR 68
+ E P + Q+ C+ + + + W+ S G+ + L
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLS 170
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 25.9 bits (56), Expect = 1.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
I + P ++ S TT V T P EI+W +D
Sbjct: 10 ITQTPYKVSISGTT---VILTCPQYPGSEILWQHND 42
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 25.9 bits (56), Expect = 1.2
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 37 AQVECTARGSPNPE----IIWIRSDGTAVG 62
A + CTA + I W G +G
Sbjct: 246 ANITCTAVSTSLLVDDVLIDWENPSGWIIG 275
Score = 24.4 bits (52), Expect = 4.0
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIR 55
P + + G + C I W +
Sbjct: 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYK 165
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 25.3 bits (54), Expect = 1.9
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 37 AQVECTARGSPNPEII-WIRSDGTAVGDVPGLRK 69
V C + I W +G G P L
Sbjct: 349 VAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVD 382
Score = 24.6 bits (52), Expect = 4.6
Identities = 3/21 (14%), Positives = 6/21 (28%)
Query: 40 ECTARGSPNPEIIWIRSDGTA 60
C N +++ A
Sbjct: 252 LCRQSSGENCDVVVNTLGKRA 272
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 25.2 bits (55), Expect = 2.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 37 AQVECTARGSPNPEIIWIRSD 57
A C S P + W + D
Sbjct: 500 ANFYCRVIASSPPVVTWHKDD 520
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI;
1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4
PDB: 1y0r_A* 1xfo_A
Length = 353
Score = 24.9 bits (55), Expect = 2.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 22 IKEPPNRIDFSNTT-------GAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
+K+ + F T GA+ T+ P+ D T D+PG ++K
Sbjct: 197 LKDAKADVYFVATVQEEVGLRGAR---TSAFGIEPDYG-FAIDVTIAADIPGTPEHKQ 250
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 25.2 bits (54), Expect = 2.3
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAV 61
++ C +R G+P P+I W R +G +
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR-NGQRL 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.4
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 7/28 (25%)
Query: 4 SLLRLTMAAEDDTLGPIFIKEPPNRIDF 31
+ RL++ AE I++ D
Sbjct: 326 NPRRLSIIAE-------SIRDGLATWDN 346
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 24.4 bits (53), Expect = 4.0
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 25 PPNRIDFSNTTGAQVECTARGSPNPEIIWI 54
P D + A + CT G + +
Sbjct: 10 RPALEDLLLGSEANLTCTLTGLRDASGVTF 39
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 24.1 bits (52), Expect = 4.6
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 31 FSNTTGAQVECTARGSPNPEIIWIR 55
+ + A + C + E+ +
Sbjct: 112 YWECSNATLTCEVLEGTDVELKLYQ 136
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase;
2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB:
1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Length = 177
Score = 24.0 bits (53), Expect = 4.9
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 48 NPEIIWIRSDGTAVGD-----VPGLR 68
NP I + T+ VPG+R
Sbjct: 84 NPVITP-LTKDTSGFWEGCLSVPGMR 108
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 24.0 bits (51), Expect = 5.4
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 37 AQVECTARGSPNPEIIWIRSDG 58
++C + + + W
Sbjct: 56 VVLKCQVKDHEDSSLQWSNPAQ 77
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 24.0 bits (51), Expect = 7.0
Identities = 5/19 (26%), Positives = 5/19 (26%)
Query: 38 QVECTARGSPNPEIIWIRS 56
V P IW S
Sbjct: 95 NVYVKVNNGPLGNPIWNIS 113
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation,
hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP:
d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Length = 180
Score = 23.6 bits (52), Expect = 7.1
Identities = 6/26 (23%), Positives = 8/26 (30%), Gaps = 6/26 (23%)
Query: 48 NPEIIWIRSDGTAVGD-----VPGLR 68
NPE ++ VPG
Sbjct: 87 NPEFEP-LTEEMDQYQEGCLSVPGFY 111
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta
tetrameric PROT protein structure initiative; 2.80A
{Campylobacter jejuni} SCOP: d.258.1.1
Length = 370
Score = 23.2 bits (51), Expect = 9.2
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 33 NTTGAQVECTARGSP 47
++ GA V G
Sbjct: 201 DSVGAAVFTKVSGML 215
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A
{Bacillus cereus} PDB: 1ws1_A*
Length = 156
Score = 23.1 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 7/26 (26%)
Query: 48 NPEIIWIRSDGTAVGD-----VPGLR 68
NP I+ G VG PGL
Sbjct: 74 NPSILE--KRGEQVGPEGCLSFPGLY 97
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1
c.56.5.4
Length = 340
Score = 23.4 bits (51), Expect = 9.6
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 11/58 (18%)
Query: 22 IKEPPNRIDFSNTT-------GAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
P F T G+ P I + T GD P L + K+
Sbjct: 182 GVSPAYDTYFVFTVQEETGLRGSA---VVVEQLKPTCA-IVVETTTAGDNPELEERKW 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.426
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,172,273
Number of extensions: 56101
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 240
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)