RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11558
(74 letters)
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 37.2 bits (85), Expect = 2e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 16 TLGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIR 55
+ GP+F ++P + + + +V C AR +P W
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM 43
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 37.0 bits (85), Expect = 2e-05
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWI 54
P + ++P I + C G P P ++W
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS 38
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 31.9 bits (71), Expect = 0.002
Identities = 8/40 (20%), Positives = 10/40 (25%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
PI P + C P I WI+
Sbjct: 5 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 44
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 31.0 bits (69), Expect = 0.004
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P FI +P + A C S P + W
Sbjct: 2 PRFIVKPYGTEVGEGQS-ANFYCRVIASSPPVVTW 35
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 30.2 bits (67), Expect = 0.007
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P + ++ + A G P+PE W
Sbjct: 5 PKIFERIQSQTVGQGSD-AHFRVRVVGKPDPECEW 38
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 29.8 bits (66), Expect = 0.009
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P ++ + + + C A G P P + W
Sbjct: 2 PDWLDVITDTEADIGSD-LRWSCVASGKPRPAVRW 35
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 29.8 bits (66), Expect = 0.011
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P I+ P ++ + + ++ G+ W
Sbjct: 1 PQIIQFPEDQKVRAGES-VELFGKVTGTQPITCTW 34
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.6 bits (65), Expect = 0.014
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGT 59
++IK + ++EC + N P + W + +GT
Sbjct: 4 QLYIKRQSEHSILAGDP-FELECPVKYCANRPHVTWCKLNGT 44
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 29.4 bits (65), Expect = 0.016
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 19 PIFIKEPPNRIDFSNTT---GAQV--ECTARGSPNPEIIWIR 55
P + +++ V C A G+P P + W++
Sbjct: 2 PYWTN--TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK 41
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 29.1 bits (64), Expect = 0.019
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 11 AAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
A E + P F K + + A+ +C G P+PE++W
Sbjct: 1 AEEKPHVKPYFTKTILDMEVVEGSA-ARFDCKVEGYPDPEVMW 42
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 29.0 bits (64), Expect = 0.021
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWI 54
P + P +EC A G+P P+I W
Sbjct: 5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 40
>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 28.4 bits (62), Expect = 0.043
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 22 IKEPPNRIDFSNTTGAQ---VECTARGSPNPEIIWIR 55
+ PP + +E RG+P P + W+
Sbjct: 2 VYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLH 38
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 28.0 bits (61), Expect = 0.048
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
+F P + A + C S P IIW
Sbjct: 2 LMFKNAPTPQEFKEGED-AVIVCDVVSSLPPTIIWKHKGR 40
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 28.2 bits (61), Expect = 0.049
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
P+ + ++ + Q+ C G + W +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGS 41
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 27.5 bits (60), Expect = 0.067
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWI 54
+ +P + + + A+ C G P P + W+
Sbjct: 2 ILTKPRSMTVYEGES-ARFSCDTDGEPVPTVTWL 34
>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.2 bits (59), Expect = 0.12
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 22 IKEPPNRIDFSNTTGAQ---VECTARGSPNPEIIW 53
+ P + T + T +G+P P + W
Sbjct: 1 VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQW 35
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 26.9 bits (58), Expect = 0.14
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 18 GPIFIK-EPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
GP + + P + + C A G+P PE+ ++
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 40
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 26.8 bits (58), Expect = 0.16
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 19 PIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIW 53
P ++ + ++ + G V C A G P P + W
Sbjct: 3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW 39
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 26.8 bits (58), Expect = 0.17
Identities = 2/19 (10%), Positives = 6/19 (31%)
Query: 37 AQVECTARGSPNPEIIWIR 55
+ C +P + +
Sbjct: 21 TMIYCMYGSNPMGYPNYFK 39
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 26.5 bits (57), Expect = 0.18
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
P + + T +E G+P+P W
Sbjct: 3 PKILTASRKIKIKAGFT-HNLEVDFIGAPDPTATW 36
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 25.8 bits (55), Expect = 0.40
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWI 54
P+ +P + N +EC G+
Sbjct: 3 PVLKDQPAEVLFRENNP-TVLECIIEGNDQGVKYSW 37
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 25.3 bits (54), Expect = 0.57
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 39 VECTARGSPNPEIIWIR 55
+ + G P P + W+
Sbjct: 20 IPFSVDGQPAPSLRWLF 36
>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
constant domain 2, CH2-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 24.6 bits (53), Expect = 0.81
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 25 PPNRIDFSNTTGAQVECTARGSPNPEII---WIRSDG 58
P D + A + CT G + + W S G
Sbjct: 9 RPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSG 45
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 24.3 bits (51), Expect = 1.1
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
+G + + + ++ C G +P + W
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEW 38
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 24.2 bits (51), Expect = 1.2
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
P F++ ++ A +C+A G
Sbjct: 3 PHFLRIQNVEVNAGQF--ATFQCSAIGRTVAGDRLWL 37
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 24.2 bits (51), Expect = 1.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 37 AQVECTARGSPNPEIIWIR 55
++ C+ G P+I W++
Sbjct: 14 VKLNCSVEGMEEPDIQWVK 32
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 24.3 bits (51), Expect = 1.3
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
GP +K + + A + C + P
Sbjct: 1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 40
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 22.7 bits (47), Expect = 4.8
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 37 AQVECTARGSPNPEIIWIRSDG 58
+++ G P P +IW ++
Sbjct: 27 LRLDVPISGDPAPTVIWQKAIT 48
>d2i5nc1 a.138.1.2 (C:1-332) Photosynthetic reaction centre
(cytochrome subunit) {Rhodopseudomonas viridis [TaxId:
1079]}
Length = 332
Score = 22.6 bits (48), Expect = 6.7
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
TG RG+P P + + + + +
Sbjct: 123 QHVAQTGVTCYTCHRGTPLPPYVRYLEPTLPLNNRETPTHVERV 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.426
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,358
Number of extensions: 10779
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 30
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)