BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11559
(189 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91090670|ref|XP_974410.1| PREDICTED: similar to CG8545 CG8545-PA [Tribolium castaneum]
gi|270013309|gb|EFA09757.1| hypothetical protein TcasGA2_TC011896 [Tribolium castaneum]
Length = 731
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/152 (69%), Positives = 118/152 (77%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRPLTIRTN+LKTRRRDLAQAL+NRGVNLDP+GKWSKVGLV+Y+S VPIGA
Sbjct: 254 LEFLEASEVQRPLTIRTNSLKTRRRDLAQALINRGVNLDPVGKWSKVGLVVYSSQVPIGA 313
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+QGAS AP A AALMKNTGVLFANDV
Sbjct: 314 TPEYLAGHYIIQGASSLLPVMALAPQENERILDMAAAPGGKASHIAALMKNTGVLFANDV 373
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER KAIVGNFHRLGV+NSV+TC+DGR++ K
Sbjct: 374 NSERIKAIVGNFHRLGVVNSVITCVDGRKFPK 405
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
PEENE VV+YAL+KR+VKLV TGL+FG EGF NYRQ
Sbjct: 477 PEENEWVVDYALKKRNVKLVDTGLEFGNEGFTNYRQ 512
>gi|357609454|gb|EHJ66457.1| hypothetical protein KGM_08224 [Danaus plexippus]
Length = 666
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 117/150 (78%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE RPLTIRTN+LKTRRRDLAQAL+NRGVNLDP+GKWSKVGLV+Y+STVPIGA
Sbjct: 318 VEFLEASEVARPLTIRTNSLKTRRRDLAQALINRGVNLDPVGKWSKVGLVVYSSTVPIGA 377
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS + +C AP A AA+MKNTG LFAND
Sbjct: 378 TPEYLAGHYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFANDA 437
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K+R+KAIVGNFHRLG++N+V+ DGRQ+
Sbjct: 438 NKDRTKAIVGNFHRLGIVNAVICNYDGRQF 467
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
PEENE VVNYAL++R+VKLVPTGLDFGTEGFV YR ++ + P ++
Sbjct: 541 PEENEWVVNYALKRRNVKLVPTGLDFGTEGFVKYRHHR-FHPSLK 584
>gi|383851252|ref|XP_003701148.1| PREDICTED: putative ribosomal RNA methyltransferase nop2-like
[Megachile rotundata]
Length = 596
Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 116/149 (77%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+TIRTNTLKTRRRDLA+AL+NRGVNLDPIGKW+KVGLV+Y+S VP+GA
Sbjct: 291 LEFLEASEIQRPMTIRTNTLKTRRRDLAEALINRGVNLDPIGKWTKVGLVVYSSQVPMGA 350
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS + +C AP + AALMKNTGVLF+NDV
Sbjct: 351 TPEYLAGHYILQGASSFLPVMALEPKENERILDMCAAPGGKSSHIAALMKNTGVLFSNDV 410
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ ER KA+VGNFHRLG++NSVV DGR+
Sbjct: 411 NAERIKAVVGNFHRLGIVNSVVCTYDGRK 439
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
PEENE V++YAL+KRDVKLVPTGL+FGTEGF +YRQ + + P ++
Sbjct: 514 PEENEWVIDYALKKRDVKLVPTGLEFGTEGFTSYRQYR-FHPSLK 557
>gi|193638967|ref|XP_001943714.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Acyrthosiphon pisum]
Length = 657
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 114/149 (76%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
MSFLEASET RP+TIRTN+LKTRRRDLAQAL+NRGVNLDPIG WSKVGLV+YNSTVPIGA
Sbjct: 312 MSFLEASETPRPVTIRTNSLKTRRRDLAQALINRGVNLDPIGNWSKVGLVVYNSTVPIGA 371
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS +C AP A AA+MKNTGVL ANDV
Sbjct: 372 TPEYLAGHYMLQAASSMLPVMALAPQENELILDMCSAPGGKASHIAAIMKNTGVLIANDV 431
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+K R+KA++GNFHR+G+ NSV++ DGR
Sbjct: 432 NKNRAKAVIGNFHRMGIANSVISTYDGRH 460
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE V++YAL+KRDVKLV TGL FGTEGF N RQ++ + P M+
Sbjct: 536 EENECVIDYALKKRDVKLVDTGLSFGTEGFTNLRQHR-FHPTMK 578
>gi|328784827|ref|XP_001121968.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Apis
mellifera]
Length = 657
Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 115/149 (77%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+TIRTN LKTRRRDLA+AL+NRGVNLDPIGKW+KVGLV+Y+S VP+GA
Sbjct: 353 LEFLEASEVQRPMTIRTNILKTRRRDLAEALINRGVNLDPIGKWTKVGLVVYSSQVPMGA 412
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS + +C AP + AALMKNTGVLF+NDV
Sbjct: 413 TPEYLAGHYILQGASSFLPVMALDPKENEKILDMCAAPGGKSSHIAALMKNTGVLFSNDV 472
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
++ER KA+VGNFHRLG+ NSVV DGR+
Sbjct: 473 NEERIKAVVGNFHRLGITNSVVCTYDGRK 501
>gi|340726578|ref|XP_003401633.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Bombus terrestris]
Length = 602
Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 115/149 (77%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+TIRTN LKTRRRDLA+AL+NRGVNLDPIGKW+KVGLVIY+S VP+GA
Sbjct: 297 LEFLEASEVQRPMTIRTNILKTRRRDLAEALINRGVNLDPIGKWTKVGLVIYSSQVPMGA 356
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS + +C AP + AALMKNTGVLF+NDV
Sbjct: 357 TPEYLAGHYILQGASSFLPVMALDPKENERVLDMCAAPGGKSSHIAALMKNTGVLFSNDV 416
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
++ER KA+VGNFHRLG+ NS+V DGR+
Sbjct: 417 NEERIKAVVGNFHRLGITNSIVCTYDGRK 445
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
PEENE V+++AL+KRDVKL+PTGL+FG EGF +YRQ + + P ++
Sbjct: 520 PEENEWVIDFALKKRDVKLIPTGLEFGAEGFTSYRQYR-FHPSLK 563
>gi|157128943|ref|XP_001661560.1| ribosomal RNA small subunit methyltransferase b (sun) [Aedes
aegypti]
gi|108872435|gb|EAT36660.1| AAEL011282-PA [Aedes aegypti]
Length = 812
Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/150 (64%), Positives = 115/150 (76%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRPLTIRTN+LKTRRRDLAQAL+NRGVNLDPIGKWSK GLV+Y S VP+GA
Sbjct: 328 LEFLEASEVQRPLTIRTNSLKTRRRDLAQALINRGVNLDPIGKWSKEGLVVYTSQVPLGA 387
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP + AALMKNTGVLFANDV
Sbjct: 388 TPEYLAGHYMIQGASSMLPVIALGPEENERILDLCAAPGGKSSHIAALMKNTGVLFANDV 447
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K+R +A+VGNFHRLG+ N++VT +DG +Y
Sbjct: 448 NKDRLQAVVGNFHRLGIQNAIVTSIDGTKY 477
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
P+ENE VV+YALRKR+V+LV TGLDFG EGFVN+ K Y P M+
Sbjct: 551 PQENEWVVDYALRKRNVRLVSTGLDFGNEGFVNFAGQK-YHPSMK 594
>gi|345481794|ref|XP_001604770.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Nasonia vitripennis]
Length = 786
Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 114/149 (76%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLE+SE QRP+TIRTNTLKTRRRDLA AL+NRGVNLDPIGKW+ VGLV+Y+S VP+GA
Sbjct: 477 LEFLESSEVQRPMTIRTNTLKTRRRDLAHALINRGVNLDPIGKWTNVGLVVYSSQVPMGA 536
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS + +C AP + AALMKNTGVLF+NDV
Sbjct: 537 TPEYLAGHYILQGASSFLPVMALEPKINERILDMCAAPGGKSSHIAALMKNTGVLFSNDV 596
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+K+R KA++GNFHRLG+ NSV+ DGR+
Sbjct: 597 NKDRIKAVIGNFHRLGITNSVICSYDGRK 625
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
PEENE +V+YALRKRDVK+VPTGL+FG +GF NYRQ++ + P ++
Sbjct: 700 PEENEWIVDYALRKRDVKVVPTGLEFGADGFTNYRQHR-FHPSLK 743
>gi|332018753|gb|EGI59318.1| Putative ribosomal RNA methyltransferase NOP2 [Acromyrmex
echinatior]
Length = 677
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 115/150 (76%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+TIR NTLKTRRRDLA+AL+NRGVNLDPIGKW+K+GLV+Y+S VP+GA
Sbjct: 372 LEFLEASEVQRPMTIRANTLKTRRRDLAEALINRGVNLDPIGKWTKIGLVVYSSQVPMGA 431
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS + +C AP A AA+MKNTG LFAND+
Sbjct: 432 TPEYLAGHYMIQGASSFLPVMALDPKENERILDMCAAPGGKASHIAAIMKNTGTLFANDL 491
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+KER KA+VGNFHRLG++N V+ DGR++
Sbjct: 492 NKERLKAVVGNFHRLGIVNCVICSYDGRKF 521
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
PEENE +++YAL+KRDVKL+PT L+FGT+GF +YRQ
Sbjct: 595 PEENEWIIDYALKKRDVKLLPTDLEFGTDGFTSYRQ 630
>gi|307110087|gb|EFN58324.1| hypothetical protein CHLNCDRAFT_30164, partial [Chlorella
variabilis]
Length = 399
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 139/250 (55%), Gaps = 69/250 (27%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +EA E RP+T+RTNTLKTRRR+LA AL+NRGVNLDPIG WSKVGLV+Y S VP+GA
Sbjct: 15 LELIEAQEVPRPVTLRTNTLKTRRRELAGALINRGVNLDPIGNWSKVGLVVYESQVPVGA 74
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQGAS + C AP AALM+NTGVLFAN++
Sbjct: 75 TPEYMAGHYMLQGASSFLPCMALAPQEGEQVVDVAAAPGGKTTYLAALMRNTGVLFANEI 134
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ------------------------------- 133
+KER ++ N R+GV N++V DGRQ
Sbjct: 135 NKERLTSLTANLQRMGVTNTIVCNYDGRQLPRVLGERSVDRVLLDAPCSGTGVISKDPTV 194
Query: 134 -----YGKP----------------EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
G P EENE VVNYAL++RDVK+VP GL+FG GF+ +R
Sbjct: 195 KVGGSLGLPSGAGVVVVYSTCSMMVEENENVVNYALKRRDVKVVPCGLEFGRPGFIRFRD 254
Query: 173 NKSYRPEMQE 182
+ + P + E
Sbjct: 255 FR-FHPSLAE 263
>gi|350418300|ref|XP_003491816.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Bombus impatiens]
Length = 604
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 114/149 (76%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+TIRTN LKTRRRDLA+AL+NRGVNLDPIGKW+KVGLVIY+S VP+GA
Sbjct: 299 LEFLEASEVQRPMTIRTNILKTRRRDLAEALINRGVNLDPIGKWTKVGLVIYSSQVPMGA 358
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS + +C AP + AALMKNTGVLF+ND
Sbjct: 359 TPEYLAGHYILQGASSFLPVMALDPKENERVLDMCAAPGGKSSHIAALMKNTGVLFSNDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
++ER KA+VGNFHRLG+ NS+V DGR+
Sbjct: 419 NEERIKAVVGNFHRLGITNSIVCTYDGRK 447
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
PEENE V+++AL+KRDVKL+PTGL+FG EGF +YRQ + + P ++
Sbjct: 522 PEENEWVIDFALKKRDVKLIPTGLEFGAEGFTSYRQYR-FHPSLK 565
>gi|158292802|ref|XP_314123.4| AGAP005221-PA [Anopheles gambiae str. PEST]
gi|157017164|gb|EAA44543.4| AGAP005221-PA [Anopheles gambiae str. PEST]
Length = 824
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 113/151 (74%), Gaps = 16/151 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+TIRTN+LKTRRRDLAQAL+NRG+NLDPIGKWSK GLV+Y S VP+GA
Sbjct: 357 LEFLEASEIQRPVTIRTNSLKTRRRDLAQALINRGINLDPIGKWSKEGLVVYTSQVPLGA 416
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQG S +C AP + AALMKNTGVLF ND
Sbjct: 417 TPEYLAGHYMLQGGSSMLPVMALAPEENERILDMCAAPGGKSSHIAALMKNTGVLFVNDA 476
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
+KER A++GNFHRLG+ N+V+TC+DG +YG
Sbjct: 477 NKERLHAVLGNFHRLGIQNAVITCMDGVKYG 507
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
P+ENE V+++AL++R+V+LVPTGLDFG EG N+ ++ + P M+
Sbjct: 580 PQENEWVIDFALKRRNVRLVPTGLDFGVEGMTNFGAHR-FHPTMK 623
>gi|307182612|gb|EFN69780.1| Putative RNA methyltransferase NOL1 [Camponotus floridanus]
Length = 696
Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 116/150 (77%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE +RP+TIRTNTLKTRRRDLA+AL++RGVNLDPIGKW+KVGLV+Y+S VP+GA
Sbjct: 400 LEFLEASEVERPMTIRTNTLKTRRRDLAEALISRGVNLDPIGKWTKVGLVVYSSQVPMGA 459
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+QGA+ + +C AP AALMKNTG+LFANDV
Sbjct: 460 TPEYLAGHYIIQGAASFLPVMVLEPRENERILDMCAAPGGKTSHIAALMKNTGILFANDV 519
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K+R KA+VGN HR+GV+NS++ DGRQ+
Sbjct: 520 NKDRLKAVVGNLHRIGVVNSIICNYDGRQF 549
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
PEENE +++YAL+KR+VKL+PTGL+FG +GF +YRQ++ + P ++
Sbjct: 623 PEENEWIIDYALKKRNVKLLPTGLEFGADGFTSYRQHR-FHPSLK 666
>gi|195442109|ref|XP_002068802.1| GK17973 [Drosophila willistoni]
gi|194164887|gb|EDW79788.1| GK17973 [Drosophila willistoni]
Length = 866
Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 147/267 (55%), Gaps = 88/267 (32%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTN+LKTRRRDLA AL+NRGVNLDP+GKW+KVGLV++NS VP+GA
Sbjct: 332 MEYLEASEVARPLTIRTNSLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVFNSQVPLGA 391
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP AA+MKNTGVLFAND
Sbjct: 392 TPEYLAGHYMIQGASSMLPVMALAPQENERILDMCSAPGGKGSHIAAIMKNTGVLFANDS 451
Query: 105 SKERSKA-------------------------IVGNFHRL---------GVIN------- 123
+++R KA I+ F R+ GV++
Sbjct: 452 NRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGFDRVLLDAPCTGTGVVSKDPSVKT 511
Query: 124 -------------------SVVTCLDGRQYGK-----------PEENEAVVNYALRKRDV 153
+ + C+D + PEENE V++YAL+KR+V
Sbjct: 512 TKSDVDVQRCYNLQRKLLLTAIDCVDAKSSSGGYIVYSTCSVLPEENEWVIDYALKKRNV 571
Query: 154 KLVPTGLDFGTEGFVNYRQNKSYRPEM 180
KLVPTGLDFG EGFVN+RQ++ + P +
Sbjct: 572 KLVPTGLDFGVEGFVNFRQHR-FHPSL 597
>gi|291235462|ref|XP_002737664.1| PREDICTED: NOP2 protein-like [Saccoglossus kowalevskii]
Length = 628
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 114/152 (75%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E QRP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSKVGLVIY S+VPIGA
Sbjct: 301 IEFLEANEVQRPITIRTNTLKTRRRDLAQALINRGVNLDPVGKWSKVGLVIYESSVPIGA 360
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS + +C AP A+LMKNTG+LFAND
Sbjct: 361 TPEYLAGHYMMQGASSFLPVMALAPQENERILDMCAAPGGKTSYIASLMKNTGMLFANDA 420
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+KER K+IVGN HR+G+ N+V+ DGR + K
Sbjct: 421 NKERVKSIVGNIHRMGITNTVICNEDGRSFPK 452
>gi|321478295|gb|EFX89252.1| hypothetical protein DAPPUDRAFT_205675 [Daphnia pulex]
Length = 474
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/148 (66%), Positives = 112/148 (75%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+ET RP+TIRTNTLKTRRRDLAQAL+NRGVNLDPIGKWSKVGLVIYNS VP+GA
Sbjct: 89 IEFLEANETPRPMTIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLVIYNSQVPVGA 148
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKL-------------AAALMKNTGVLFANDV 104
TPEYL GHYILQGAS + AP K+ AALMKNTG+LFAND
Sbjct: 149 TPEYLAGHYILQGASSFLPVMALAPQEGDKVLDMSAAPGGKTSHIAALMKNTGMLFANDA 208
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
+ +R+KA+VGN HRLGV N+VV DG+
Sbjct: 209 NPDRAKAVVGNLHRLGVTNAVVMTYDGK 236
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 29/35 (82%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
+ENE VV+YAL+KR VK+V TGLDFG +GF +++
Sbjct: 309 QENEWVVDYALKKRHVKVVETGLDFGRDGFPRFQK 343
>gi|170049385|ref|XP_001855854.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus]
gi|167871246|gb|EDS34629.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus]
Length = 794
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 115/150 (76%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRPLTIRTN+LKTRRRDLAQAL+NRGVNLDPIGKWSK GLV+Y+S VP+GA
Sbjct: 317 LEFLEASEVQRPLTIRTNSLKTRRRDLAQALINRGVNLDPIGKWSKEGLVVYSSQVPLGA 376
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP + AALM+NTGVLFANDV
Sbjct: 377 TPEYLAGHYMIQGASSMLPVMALAPEENERILDMCAAPGGKSSHIAALMRNTGVLFANDV 436
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K+R +A+VGNFHRLG+ N++VT DG +Y
Sbjct: 437 NKDRLQAVVGNFHRLGIQNAIVTSEDGTKY 466
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
P+ENE V++YALRKR+VKLVPTGLDFG EG VN+ K Y P M+
Sbjct: 540 PQENEWVIDYALRKRNVKLVPTGLDFGAEGLVNFCGQK-YHPSMK 583
>gi|449485255|ref|XP_002193312.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Taeniopygia guttata]
Length = 695
Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++FLEA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLVIY+STVPIGA
Sbjct: 311 INFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVIYDSTVPIGA 370
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTG++ AND
Sbjct: 371 TPEYLAGHYMLQGASSLLPVMALAPQENERILDMCCAPGGKTSYIAQLMKNTGMILANDS 430
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S ER +++VGN HRLGV N+VV+ DGRQ+ K
Sbjct: 431 SAERLRSVVGNLHRLGVTNAVVSNCDGRQFPK 462
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LV TGLDFG EGF ++ ++ + P ++
Sbjct: 535 EENECVVDYALKKRNVRLVATGLDFGKEGFTRFK-DRRFHPSLK 577
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQ 29
++FLEA+E RP+TIRTNTLKTRRRDLAQ
Sbjct: 52 INFLEANEVPRPVTIRTNTLKTRRRDLAQ 80
>gi|405955425|gb|EKC22548.1| Putative ribosomal RNA methyltransferase NOP2 [Crassostrea gigas]
Length = 651
Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 113/148 (76%), Gaps = 16/148 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLEA+E QRP+TIRTNTLKTRRRDLAQAL+NRGVNLDPIGKWSKVGLV+Y+S VP+GATP
Sbjct: 264 FLEANEVQRPVTIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLVVYDSQVPLGATP 323
Query: 63 EYLGGHYILQGASKY---WICAPHRAAKL-------------AAALMKNTGVLFANDVSK 106
EYL GHYI+QG S + AP ++ A+LMKNTGV+FAND +K
Sbjct: 324 EYLAGHYIIQGGSSFLPVMALAPQENERILDMSSAPGGKTTHIASLMKNTGVIFANDANK 383
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+R+KAIVGN HR+G+ N+V+ DGR++
Sbjct: 384 DRAKAIVGNVHRMGITNTVICNYDGRKF 411
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+ENE+V+ YAL KR+VKLVPTGLDFG EG+VN+ +++ + P M+
Sbjct: 486 DENESVIEYALNKRNVKLVPTGLDFGKEGYVNFERHR-FHPNMK 528
>gi|194752730|ref|XP_001958672.1| GF12515 [Drosophila ananassae]
gi|190619970|gb|EDV35494.1| GF12515 [Drosophila ananassae]
Length = 896
Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 113/150 (75%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTNTLKTRRRDLA AL+NRGVNLDP+GKW+KVGLV++NS VP+GA
Sbjct: 360 MEYLEASEVARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVFNSQVPLGA 419
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP A++MKNTGVLFAND
Sbjct: 420 TPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKGSHIASIMKNTGVLFANDS 479
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KAIV NFHRLG++N+VV+C DG ++
Sbjct: 480 NRDRIKAIVANFHRLGIVNAVVSCEDGTKF 509
>gi|22024126|ref|NP_610786.2| CG8545 [Drosophila melanogaster]
gi|21627400|gb|AAF58504.2| CG8545 [Drosophila melanogaster]
gi|254039763|gb|ACT56594.1| LD11307p [Drosophila melanogaster]
Length = 891
Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 113/150 (75%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTNTLKTRRRDLA AL+NRGVNLDP+GKW+KVGLV++NS VP+GA
Sbjct: 349 MEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVFNSQVPLGA 408
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP A++MKNTGVLFAND
Sbjct: 409 TPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKGSHIASIMKNTGVLFANDS 468
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KAIV NFHRLG++N+VV+C DG ++
Sbjct: 469 NRDRIKAIVANFHRLGIVNAVVSCEDGTKF 498
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
PEENE V++YAL+KR+VKLVPTGLDFG EGF +RQ++ + P +
Sbjct: 572 PEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHR-FHPSL 614
>gi|195333786|ref|XP_002033567.1| GM21395 [Drosophila sechellia]
gi|194125537|gb|EDW47580.1| GM21395 [Drosophila sechellia]
Length = 865
Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 113/150 (75%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTNTLKTRRRDLA AL+NRGVNLDP+GKW+KVGLV++NS VP+GA
Sbjct: 342 MEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVFNSQVPLGA 401
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP A++MKNTGVLFAND
Sbjct: 402 TPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKGSHIASIMKNTGVLFANDS 461
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KAIV NFHRLG++N+VV+C DG ++
Sbjct: 462 NRDRIKAIVANFHRLGIVNAVVSCEDGTKF 491
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
PEENE V++YAL+KR+VKLVPTGLDFG EGF +RQ++ + P +
Sbjct: 565 PEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHR-FHPSL 607
>gi|432908758|ref|XP_004078019.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Oryzias latipes]
Length = 758
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E QRP+TIRTNTLKTRRRDLAQAL+NRGVNLDPIGKWSKVGLVIY+S+VP+GA
Sbjct: 320 VDFLEANEIQRPVTIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLVIYDSSVPVGA 379
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS + AP A LM+NTGV+ AND
Sbjct: 380 TPEYLAGHYMLQGASSFLPVMALSPQEGEMVLDMSSAPGGKTTYIAQLMRNTGVIVANDA 439
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+VV DGRQ+ K
Sbjct: 440 NSERLKSVVGNIHRLGVTNTVVCNYDGRQFPK 471
>gi|417404787|gb|JAA49130.1| Putative trna and rrna cytosine-c5-methylase nucleolar protein
nol1/nop2 [Desmodus rotundus]
Length = 814
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 300 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 359
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 360 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 419
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 420 SAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 451
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 524 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 560
>gi|351715691|gb|EHB18610.1| Putative ribosomal RNA methyltransferase NOP2 [Heterocephalus
glaber]
Length = 816
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 112/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 302 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 361
Query: 61 TPEYLGGHYILQGASKY------------WI----CAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS WI CAP A LMKNTGV+ AND
Sbjct: 362 TPEYLAGHYMLQGASSMLPVMALAPQEHEWILDMCCAPGGKTSYIAQLMKNTGVILANDA 421
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 422 NAERLKSVVGNLHRLGVTNAIISHYDGRQFPK 453
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + +
Sbjct: 526 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFH 564
>gi|195485322|ref|XP_002091044.1| GE12467 [Drosophila yakuba]
gi|194177145|gb|EDW90756.1| GE12467 [Drosophila yakuba]
Length = 902
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 113/150 (75%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTNTLKTRRRDLA AL+NRGVNLDP+GKW+KVGLV++NS VP+GA
Sbjct: 359 MEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVFNSQVPLGA 418
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP A++MKNTGVLFAND
Sbjct: 419 TPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKGSHIASIMKNTGVLFANDS 478
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KAIV NFHRLG++N+VV+C DG ++
Sbjct: 479 NRDRIKAIVANFHRLGIVNAVVSCEDGTKF 508
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
PEENE V++YAL+KR+VKLVPTGLDFG EGF +RQ++ + P +
Sbjct: 582 PEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHR-FHPSL 624
>gi|427783357|gb|JAA57130.1| Putative trna and rrna cytosine-c5-methylase nucleolar protein
nol1/nop2 [Rhipicephalus pulchellus]
Length = 697
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 111/150 (74%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIR N+LKTRRRDLAQAL+NRGVNLDPIGKWSKVGL++YNS VP+GA
Sbjct: 260 IEFLEANEVNRPVTIRANSLKTRRRDLAQALINRGVNLDPIGKWSKVGLIVYNSQVPVGA 319
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGA+ +C AP AA+MKNTGVLFAN++
Sbjct: 320 TPEYLAGHYVLQGAASMLPVMALAPQENERILDMCAAPGGKTSHIAAIMKNTGVLFANEL 379
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
KER KAIVGN HRLGV N+VV DGR++
Sbjct: 380 HKERCKAIVGNLHRLGVNNTVVCSYDGRKF 409
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
PEENE V++YAL+KR+VKLVPTGLDFG EG YR+++
Sbjct: 483 PEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYREHR 520
>gi|194883628|ref|XP_001975903.1| GG20307 [Drosophila erecta]
gi|190659090|gb|EDV56303.1| GG20307 [Drosophila erecta]
Length = 897
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 113/150 (75%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTNTLKTRRRDLA AL+NRGVNLDP+GKW+KVGLV++NS VP+GA
Sbjct: 356 MEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVFNSQVPLGA 415
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP A++MKNTGVLFAND
Sbjct: 416 TPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKGSHIASIMKNTGVLFANDS 475
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KAIV NFHRLG++N+VV+C DG ++
Sbjct: 476 NRDRIKAIVANFHRLGIVNAVVSCEDGTKF 505
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
PEENE V++YAL+KR+VKLVPTGLDFG EGF +RQ++ + P +
Sbjct: 579 PEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHR-FHPSL 621
>gi|346471103|gb|AEO35396.1| hypothetical protein [Amblyomma maculatum]
Length = 614
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 112/150 (74%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTN+LKTRRRDLAQAL+NRGVNLDPIGKWSKVGL++YNS VP+GA
Sbjct: 257 LEFLEANEVSRPVTIRTNSLKTRRRDLAQALINRGVNLDPIGKWSKVGLIVYNSQVPVGA 316
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQGA+ +C AP A AA+MKNTGVLFAN++
Sbjct: 317 TPEYLAGQYVLQGAASMLPVMALAPQEHERILDMCAAPGGKASHIAAIMKNTGVLFANEL 376
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
KER KAIVGN HRLGV N+VV DGR++
Sbjct: 377 HKERCKAIVGNLHRLGVNNTVVCSYDGRKF 406
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
PEENE V++YAL+KR+VKLVPTGLDFG EG YR+++ +
Sbjct: 480 PEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYREHRFH 519
>gi|395743839|ref|XP_002822860.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Pongo abelii]
Length = 810
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 296 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 355
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS CAP A LMKNTGV+ AND
Sbjct: 356 TPEYLAGHYILQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 416 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 447
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 520 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 562
>gi|297690949|ref|XP_002822861.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pongo abelii]
Length = 814
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 300 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 359
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS CAP A LMKNTGV+ AND
Sbjct: 360 TPEYLAGHYILQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 419
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 420 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 451
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 524 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 566
>gi|291190482|ref|NP_001167121.1| RNA methyltransferase NOL1 [Salmo salar]
gi|223648240|gb|ACN10878.1| RNA methyltransferase NOL1 [Salmo salar]
Length = 747
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E QRP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSKVGLVI++S+VPIGA
Sbjct: 292 IDFLEANEIQRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKVGLVIFDSSVPIGA 351
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS + AP A LM+NTGV+ AND
Sbjct: 352 TPEYLAGHYMLQGASSFLPVMALSPQEGETVLDMSSAPGGKTTYMAQLMRNTGVIVANDA 411
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S +R K++VGN HRLGV NS++ DGRQ+ K
Sbjct: 412 SADRLKSVVGNIHRLGVTNSMICNYDGRQFPK 443
>gi|395847735|ref|XP_003796522.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Otolemur
garnettii]
Length = 818
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLVIY+S+VPIGA
Sbjct: 296 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVIYDSSVPIGA 355
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 356 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 416 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 447
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 520 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 562
>gi|149712409|ref|XP_001496238.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Equus
caballus]
Length = 810
Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 295 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 354
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 355 TPEYLAGHYMLQGASSMLPVMALAPQEHERVLDMCCAPGGKTSYIAQLMKNTGVILANDA 414
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++V+ DGRQ+ K
Sbjct: 415 NAERLKSVVGNLHRLGVTNTIVSHYDGRQFPK 446
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 519 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 555
>gi|195119298|ref|XP_002004168.1| GI19747 [Drosophila mojavensis]
gi|193909236|gb|EDW08103.1| GI19747 [Drosophila mojavensis]
Length = 839
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 112/150 (74%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTN+LKTRRRDLA AL+NRGVNLDP+GKW+ VGLVI+NSTVP+GA
Sbjct: 339 MEYLEASEVARPLTIRTNSLKTRRRDLAGALINRGVNLDPLGKWTNVGLVIFNSTVPLGA 398
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP AA+MKNTGVLFAND
Sbjct: 399 TPEYLAGHYMIQGASSMLPVIALAPQENERILDMCSAPGGKGSHIAAVMKNTGVLFANDA 458
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KA+V NFHRLG++N++V+C D ++
Sbjct: 459 NRDRIKAVVANFHRLGIVNAIVSCEDATKF 488
>gi|195401394|ref|XP_002059298.1| GJ18081 [Drosophila virilis]
gi|194142304|gb|EDW58710.1| GJ18081 [Drosophila virilis]
Length = 840
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 112/150 (74%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LEASE RPLTIRTN+LKTRRRDLA AL+NRGVNLDP+GKW+ VGLVI+NSTVP+GA
Sbjct: 344 MDYLEASEVARPLTIRTNSLKTRRRDLAGALINRGVNLDPLGKWTNVGLVIFNSTVPLGA 403
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP AA+MKNTGVLFAND
Sbjct: 404 TPEYLAGHYMVQGASSMLPVIALAPQENERVLDMCSAPGGKGSHIAAVMKNTGVLFANDA 463
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KA+V NFHRLG++N+VV+C D ++
Sbjct: 464 NRDRIKAVVANFHRLGIVNAVVSCEDATKF 493
>gi|348555036|ref|XP_003463330.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Cavia porcellus]
Length = 800
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 291 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 350
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 351 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 410
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 411 NAERLKSVVGNLHRLGVTNAIISHYDGRQFPK 442
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 515 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPTLR 557
>gi|332249235|ref|XP_003273769.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Nomascus leucogenys]
Length = 809
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 295 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 354
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 355 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 414
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 415 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 446
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 519 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPTLR 561
>gi|300796393|ref|NP_001178714.1| putative ribosomal RNA methyltransferase NOP2 [Rattus norvegicus]
Length = 772
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 278 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKSGLVVYDSSVPIGA 337
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 338 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 397
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++V+ DGRQ+ K
Sbjct: 398 NAERLKSVVGNLHRLGVTNTIVSHYDGRQFPK 429
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 502 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 538
>gi|426225666|ref|XP_004006984.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Ovis aries]
Length = 820
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 299 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 359 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 419 NAERLKSVVGNLHRLGVTNAIISHYDGRQFPK 450
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 523 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 559
>gi|441670400|ref|XP_004092200.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Nomascus
leucogenys]
Length = 813
Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 299 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 359 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 419 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 450
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 523 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPTLR 565
>gi|346644842|ref|NP_001231175.1| NOP2 nucleolar protein homolog [Sus scrofa]
Length = 821
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 297 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 356
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 357 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 416
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 417 NAERLKSVVGNLHRLGVTNTIISNYDGRQFPK 448
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 521 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 557
>gi|109095238|ref|XP_001105964.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 3 [Macaca mulatta]
Length = 807
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 293 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 352
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 353 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 413 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 444
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 517 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 559
>gi|109095234|ref|XP_001105884.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 2 [Macaca mulatta]
gi|109095236|ref|XP_001106035.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 4 [Macaca mulatta]
Length = 811
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 297 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 356
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 357 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 416
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 417 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 448
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 521 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 563
>gi|296487127|tpg|DAA29240.1| TPA: nucleolar protein 1, 120kDa [Bos taurus]
Length = 820
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 299 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 359 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 419 NAERLKSVVGNLHRLGVTNAIISHYDGRQFPK 450
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 523 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 559
>gi|410963633|ref|XP_003988368.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Felis
catus]
Length = 820
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 303 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 362
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 363 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 422
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 423 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 454
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 527 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 563
>gi|380813114|gb|AFE78431.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
gi|383418655|gb|AFH32541.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
gi|384947276|gb|AFI37243.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
Length = 807
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 293 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 352
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 353 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 413 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 444
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 517 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 559
>gi|156121159|ref|NP_001095727.1| putative ribosomal RNA methyltransferase NOP2 [Bos taurus]
gi|151554602|gb|AAI49979.1| NOP2 protein [Bos taurus]
gi|154425735|gb|AAI51442.1| NOP2 protein [Bos taurus]
Length = 820
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 299 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 359 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 419 NAERLKSVVGNLHRLGVTNAIISHYDGRQFPK 450
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 523 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 559
>gi|440895654|gb|ELR47792.1| Putative ribosomal RNA methyltransferase NOP2 [Bos grunniens mutus]
Length = 823
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 302 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 361
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 362 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 421
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 422 NAERLKSVVGNLHRLGVTNAIISHYDGRQFPK 453
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 526 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 562
>gi|385198059|ref|NP_001245237.1| putative ribosomal RNA methyltransferase NOP2 isoform 2 [Homo
sapiens]
gi|146289861|sp|P46087.2|NOP2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
AltName: Full=Nucleolar protein 1; AltName:
Full=Nucleolar protein 2 homolog; AltName:
Full=Proliferating-cell nucleolar antigen p120; AltName:
Full=Proliferation-associated nucleolar protein p120
gi|12653741|gb|AAH00656.1| NOP2 protein [Homo sapiens]
gi|118764015|gb|AAI28184.1| NOP2 protein [Homo sapiens]
Length = 812
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 418 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 449
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 564
>gi|431905345|gb|ELK10390.1| Putative ribosomal RNA methyltransferase NOP2 [Pteropus alecto]
Length = 826
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 311 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 370
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 371 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 430
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 431 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 462
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 535 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 571
>gi|344278108|ref|XP_003410838.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Loxodonta
africana]
Length = 825
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 301 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 360
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 361 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 420
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 421 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 452
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 525 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 567
>gi|118764303|gb|AAI28185.1| NOP2 protein [Homo sapiens]
Length = 812
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 418 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 449
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 558
>gi|397499212|ref|XP_003820353.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Pan paniscus]
gi|410046166|ref|XP_003952139.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Pan
troglodytes]
gi|410211966|gb|JAA03202.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259620|gb|JAA17776.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300876|gb|JAA29038.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410348610|gb|JAA40909.1| NOP2 nucleolar protein homolog [Pan troglodytes]
Length = 812
Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 418 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 449
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QERRFHPSLR 564
>gi|76150623|ref|NP_006161.2| putative ribosomal RNA methyltransferase NOP2 isoform 1 [Homo
sapiens]
gi|76150625|ref|NP_001028886.1| putative ribosomal RNA methyltransferase NOP2 isoform 1 [Homo
sapiens]
gi|112180609|gb|AAH65257.1| NOP2 nucleolar protein homolog (yeast) [Homo sapiens]
gi|193786365|dbj|BAG51648.1| unnamed protein product [Homo sapiens]
Length = 808
Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 294 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 354 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 414 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 445
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 518 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 560
>gi|390357598|ref|XP_787141.3| PREDICTED: putative ribosomal RNA methyltransferase nop2-like
[Strongylocentrotus purpuratus]
Length = 915
Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 112/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTN+LKTRRRDLAQAL+NRGVNLDP+GKW+KVGLVIY+S VP+GA
Sbjct: 414 IEFLEANEVARPVTIRTNSLKTRRRDLAQALINRGVNLDPVGKWTKVGLVIYDSAVPVGA 473
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKL-------------AAALMKNTGVLFANDV 104
TPEY+ GHY+LQGAS + APH K+ AALMKNTG+LFAND
Sbjct: 474 TPEYMAGHYVLQGASSFLPVMALAPHEGEKILDMCASPGSKTTYIAALMKNTGMLFANDA 533
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R A+VGN HR G+ N+V+ DG+ + K
Sbjct: 534 NKKRVSALVGNLHRCGITNTVICNEDGKSFPK 565
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
EENE VV+YAL+KR+V+LVPTG+DFG +GF ++
Sbjct: 638 EENEWVVDYALKKRNVRLVPTGIDFGQDGFSRFK 671
>gi|114643067|ref|XP_001162313.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pan troglodytes]
gi|397499214|ref|XP_003820354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pan paniscus]
gi|410211964|gb|JAA03201.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259618|gb|JAA17775.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259622|gb|JAA17777.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300872|gb|JAA29036.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300874|gb|JAA29037.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410348608|gb|JAA40908.1| NOP2 nucleolar protein homolog [Pan troglodytes]
Length = 808
Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 294 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 354 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 414 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 445
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 518 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QERRFHPSLR 560
>gi|426225668|ref|XP_004006985.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Ovis aries]
Length = 853
Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 332 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 391
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 392 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 451
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 452 NAERLKSVVGNLHRLGVTNAIISHYDGRQFPK 483
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 556 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPTLR 598
>gi|326912704|ref|XP_003202687.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Meleagris gallopavo]
Length = 613
Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++FLEA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLVIY+S+VPIGA
Sbjct: 231 INFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVIYDSSVPIGA 290
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTG++ AND
Sbjct: 291 TPEYLAGHYMLQGASSLLPVMALAPQENERILDMCCAPGGKTSYIAQLMKNTGMILANDN 350
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER +++VGN HRLGV N+VV+ DGRQ+ K
Sbjct: 351 NAERLRSVVGNLHRLGVTNAVVSNCDGRQFPK 382
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LV TGLDFG EGF ++ ++ + P ++
Sbjct: 455 EENEWVVDYALKKRNVRLVATGLDFGKEGFTRFK-DRRFHPSLK 497
>gi|354467281|ref|XP_003496098.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2
[Cricetulus griseus]
gi|344242424|gb|EGV98527.1| Putative ribosomal RNA methyltransferase NOP2 [Cricetulus griseus]
Length = 790
Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 280 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKSGLVVYDSSVPIGA 339
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 340 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 399
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 400 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 431
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 504 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 546
>gi|301773766|ref|XP_002922311.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Ailuropoda melanoleuca]
Length = 820
Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 301 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 360
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 361 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 420
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 421 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 452
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 525 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPTLR 567
>gi|109095240|ref|XP_001105811.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 1 [Macaca mulatta]
Length = 844
Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 330 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 389
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 390 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 449
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 450 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 481
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 554 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 596
>gi|432111851|gb|ELK34893.1| Putative ribosomal RNA methyltransferase NOP2 [Myotis davidii]
Length = 825
Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 307 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 366
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 367 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 426
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 427 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 458
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 531 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 567
>gi|402884916|ref|XP_003905916.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Papio
anubis]
Length = 724
Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 297 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 356
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 357 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 416
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 417 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 448
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 521 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 563
>gi|385198061|ref|NP_001245238.1| putative ribosomal RNA methyltransferase NOP2 isoform 3 [Homo
sapiens]
gi|76779860|gb|AAI06073.1| NOP2 protein [Homo sapiens]
Length = 845
Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 331 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 390
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 391 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 450
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 451 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 482
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 555 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 597
>gi|363728317|ref|XP_416502.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Gallus
gallus]
Length = 645
Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++FLEA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLVIY+S+VPIGA
Sbjct: 298 INFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVIYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTG++ AND
Sbjct: 358 TPEYLAGHYMLQGASSLLPVMALAPQENERILDMCCAPGGKTSYIAQLMKNTGMILANDS 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER +++VGN HRLGV N+VV+ DGRQ+ K
Sbjct: 418 NAERLRSVVGNLHRLGVTNAVVSNCDGRQFPK 449
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LV TGLDFG EGF ++ ++ + P ++
Sbjct: 527 EENEWVVDYALKKRNVRLVATGLDFGKEGFTRFK-DRRFHPSLK 569
>gi|189422|gb|AAA36398.1| proliferating cell nuclear protein P120, partial [Homo sapiens]
Length = 869
Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 312 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 371
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 372 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 431
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 432 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 463
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 536 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 578
>gi|426371343|ref|XP_004052606.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Gorilla gorilla gorilla]
Length = 812
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 109/150 (72%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+ ER K++VGN HRLGV N++++ DGRQ+
Sbjct: 418 NAERLKSVVGNLHRLGVTNTIISHYDGRQF 447
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 564
>gi|426371345|ref|XP_004052607.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Gorilla gorilla gorilla]
Length = 808
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 109/150 (72%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 294 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 354 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+ ER K++VGN HRLGV N++++ DGRQ+
Sbjct: 414 NAERLKSVVGNLHRLGVTNTIISHYDGRQF 443
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 518 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 560
>gi|287723|emb|CAA39119.1| P120 antigen [Homo sapiens]
Length = 855
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 418 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 449
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 564
>gi|119609186|gb|EAW88780.1| nucleolar protein 1, 120kDa [Homo sapiens]
Length = 606
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 92 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 151
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 152 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 211
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 212 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 243
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 316 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 358
>gi|195026871|ref|XP_001986354.1| GH21314 [Drosophila grimshawi]
gi|193902354|gb|EDW01221.1| GH21314 [Drosophila grimshawi]
Length = 843
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 112/150 (74%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +LEASE RPLTIRTN+LKTRRRDLA AL+NRGVNLDP+GKW+ VGLVI+NSTVP+GA
Sbjct: 360 LEYLEASEIARPLTIRTNSLKTRRRDLAGALINRGVNLDPLGKWTNVGLVIFNSTVPLGA 419
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP AA+MKNTGVLFAND
Sbjct: 420 TPEYLAGHYMIQGASSMLPVIALAPQEKERVLDMCSAPGGKGSHIAAVMKNTGVLFANDA 479
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KA+V NFHRLG++N+VV+C D ++
Sbjct: 480 NRDRIKAVVANFHRLGIVNAVVSCEDATKF 509
>gi|158966689|ref|NP_620086.2| putative ribosomal RNA methyltransferase NOP2 [Mus musculus]
Length = 794
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 283 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKSGLVVYDSSVPIGA 342
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 343 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 402
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 403 NADRLKSVVGNLHRLGVTNTIISHYDGRQFPK 434
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 507 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QARRFHPTLR 549
>gi|441670405|ref|XP_004092201.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Nomascus
leucogenys]
Length = 629
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 295 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 354
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 355 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 414
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 415 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 446
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 519 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPTLR 561
>gi|126340043|ref|XP_001369382.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2
[Monodelphis domestica]
Length = 727
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 304 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 363
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS CAP A LMKNTGV+ AND
Sbjct: 364 TPEYLAGHYILQGASSMLPVIALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 423
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGR + K
Sbjct: 424 NAERLKSVVGNLHRLGVTNTIISHDDGRHFPK 455
>gi|301624894|ref|XP_002941729.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Xenopus (Silurana) tropicalis]
Length = 749
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 145/269 (53%), Gaps = 88/269 (32%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E QRP+TIRTNTLKTRRRDLAQAL+NR VNLDP+GKWSK GLVIY+S+VPIGA
Sbjct: 319 VDFLEACEVQRPITIRTNTLKTRRRDLAQALINRSVNLDPLGKWSKTGLVIYDSSVPIGA 378
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTG++ AND+
Sbjct: 379 TPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCAPGGKTSYMAQLMKNTGIVVANDM 438
Query: 105 SKERSKA-------------------------IVGNFHRL---------GVIN------- 123
+ +R ++ ++G F R+ G+I+
Sbjct: 439 NADRLRSVVGNLHRLGVTNCIISNYDGRQISKVLGGFDRVLLDAPCSGTGIISKDPAVKT 498
Query: 124 -------------------SVVTCLDGR-QYG----------KPEENEAVVNYALRKRDV 153
S + LD + Q G EENE VV+YAL+KR+V
Sbjct: 499 NKSVQDVQRCAHIQKELILSAIDALDAQSQTGGFMVYCTCSITVEENECVVDYALKKRNV 558
Query: 154 KLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
KLVPTGLDFG EGFV +++ + + P +++
Sbjct: 559 KLVPTGLDFGKEGFVRFKERR-FHPSLRQ 586
>gi|355707602|gb|AES03006.1| NOP2 nucleolar protein-like protein [Mustela putorius furo]
Length = 604
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 305 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 364
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 365 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 424
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 425 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 456
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 529 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPTLR 571
>gi|74150573|dbj|BAE32311.1| unnamed protein product [Mus musculus]
Length = 732
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 283 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKSGLVVYDSSVPIGA 342
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 343 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 402
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 403 NADRLKSVVGNLHRLGVTNTIISHYDGRQFPK 434
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 507 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QARRFHPTLR 549
>gi|312377716|gb|EFR24477.1| hypothetical protein AND_10896 [Anopheles darlingi]
Length = 885
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 110/150 (73%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+TIRTN+LKTRRRDLAQAL+NRG+NLDPIGKWSK GLV+Y S VP+GA
Sbjct: 336 LEFLEASELQRPITIRTNSLKTRRRDLAQALINRGINLDPIGKWSKDGLVVYTSQVPLGA 395
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEY GHY+LQG S +C AP + AALMKNTGVL ND
Sbjct: 396 TPEYFAGHYMLQGGSSMLPVLALAPEENERILDMCAAPGGKSSHIAALMKNTGVLVVNDS 455
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
++ER A++GNFHRLGV N+++TC+DG ++
Sbjct: 456 NRERLHAVLGNFHRLGVQNAIITCMDGIKF 485
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNY 170
P+ENE V+++AL+KR+V+LVP G+DFG EG +
Sbjct: 559 PQENEWVIDFALKKRNVRLVPLGIDFGVEGLTRF 592
>gi|385198063|ref|NP_001245239.1| putative ribosomal RNA methyltransferase NOP2 isoform 4 [Homo
sapiens]
gi|116284068|gb|AAH82985.1| NOP2 protein [Homo sapiens]
Length = 628
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 294 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 354 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 414 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 445
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 518 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 560
>gi|444510915|gb|ELV09762.1| Putative ribosomal RNA methyltransferase NOP2 [Tupaia chinensis]
Length = 803
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 294 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 354 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGR++ K
Sbjct: 414 NAERLKSVVGNLHRLGVTNTILSHYDGRRFPK 445
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 518 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QERRFHPTLR 560
>gi|442751913|gb|JAA68116.1| Putative trna and rrna cytosine-c5-methylase nucleolar protein
nol1/nop2 [Ixodes ricinus]
Length = 528
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 112/150 (74%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTN+LKTRRRDLAQAL+NRGVNLDP+GKWSKVGL++YNS VP+GA
Sbjct: 91 IEFLEANEVNRPVTIRTNSLKTRRRDLAQALINRGVNLDPVGKWSKVGLIVYNSQVPVGA 150
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGA+ +C AP AA+MKNTG+LFAN++
Sbjct: 151 TPEYLAGHYVLQGAASMLPVMALAPQENERILDMCAAPGGKTTHIAAIMKNTGLLFANEL 210
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+ER KAI+GN HRLGV N++V DGR++
Sbjct: 211 HQERCKAIIGNLHRLGVNNTIVCSYDGRKF 240
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
PEENE V++YAL+KR+VKLVPTGLDFG EG YR+
Sbjct: 314 PEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYRE 349
>gi|291392735|ref|XP_002712919.1| PREDICTED: nucleolar protein 1, 120kDa [Oryctolagus cuniculus]
Length = 809
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 295 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 354
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 355 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 414
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGR + K
Sbjct: 415 NAERLKSVVGNLHRLGVTNTIISHHDGRHFPK 446
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 519 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 561
>gi|345791651|ref|XP_854432.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Canis
lupus familiaris]
Length = 814
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+Y+LQGAS CAP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGYYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 418 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 449
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ +
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR 558
>gi|348526221|ref|XP_003450619.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Oreochromis niloticus]
Length = 740
Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSKVGLVIY+S+VP+GA
Sbjct: 299 VDFLEANEIHRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKVGLVIYDSSVPVGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS + AP A LM+NTGV+ AND
Sbjct: 359 TPEYLAGHYMLQGASSFLPVMALSPQEGELVLDMSSAPGGKTTYIAQLMRNTGVIVANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+VV DGR++ K
Sbjct: 419 NAERLKSVVGNIHRLGVTNTVVCNYDGREFPK 450
>gi|189529666|ref|XP_001922354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Danio
rerio]
Length = 739
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSKVGLVIY+S+VPIGA
Sbjct: 296 IDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKVGLVIYDSSVPIGA 355
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS + AP A LM+NTG++ AND
Sbjct: 356 TPEYLAGHYMLQGASSFLPVMALSPQEGESVLDMSAAPGGKTTYMAQLMRNTGMIVANDA 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N+V+ DGRQ+ K
Sbjct: 416 NVDRLKSVVGNIHRLGVTNAVICNYDGRQFPK 447
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+VKLVPTGLDFG EGF +++ K + P ++
Sbjct: 520 EENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKE-KRFHPSLK 562
>gi|426371347|ref|XP_004052608.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 3
[Gorilla gorilla gorilla]
Length = 628
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 109/150 (72%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 294 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 354 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+ ER K++VGN HRLGV N++++ DGRQ+
Sbjct: 414 NAERLKSVVGNLHRLGVTNTIISHYDGRQF 443
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 518 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 560
>gi|345316919|ref|XP_001511547.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like,
partial [Ornithorhynchus anatinus]
Length = 189
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 109/150 (72%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 38 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 97
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 98 TPEYLAGHYMLQGASSMLPVMALAPQENERILDMCCAPGGKTSYIAQLMKNTGVILANDA 157
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+ ER K++VGN HRLGV N++V+ DGRQ+
Sbjct: 158 NAERLKSVVGNLHRLGVTNAIVSHYDGRQF 187
>gi|395538663|ref|XP_003775388.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
methyltransferase NOP2 [Sarcophilus harrisii]
Length = 706
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 307 VEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 366
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS CAP A LMKNTGV+ AND
Sbjct: 367 TPEYLAGHYILQGASSMLPVIALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 426
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N++++ DGR + K
Sbjct: 427 NADRLKSVVGNLHRLGVTNTIISHDDGRHFPK 458
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL+KR+V+LVPTGLDFG EGF ++R+ + + P ++
Sbjct: 531 EENECVVEYALKKRNVRLVPTGLDFGQEGFTHFRERR-FHPTLR 573
>gi|403303158|ref|XP_003942211.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Saimiri
boliviensis boliviensis]
Length = 812
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS +C AP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCSAPGGKTSYIAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 418 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 449
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 564
>gi|134025020|gb|AAI35007.1| Si:dkey-91i17.1 protein [Danio rerio]
Length = 676
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSKVGLVIY+S+VPIGA
Sbjct: 296 IDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKVGLVIYDSSVPIGA 355
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS + AP A LM+NTG++ AND
Sbjct: 356 TPEYLAGHYMLQGASSFLPVMALSPQEGESVLDMSAAPGGKTTYMAQLMRNTGMIVANDA 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N+V+ DGRQ+ K
Sbjct: 416 NVDRLKSVVGNIHRLGVTNAVICNYDGRQFPK 447
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+VKLVPTGLDFG EGF +++ K + P ++
Sbjct: 520 EENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKE-KRFHPSLK 562
>gi|60416136|gb|AAH90742.1| Si:dkey-91i17.1 protein [Danio rerio]
Length = 658
Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNLDP+GKWSKVGLVIY+S+VPIGA
Sbjct: 291 IDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVNLDPLGKWSKVGLVIYDSSVPIGA 350
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS + AP A LM+NTG++ AND
Sbjct: 351 TPEYLAGHYMLQGASSFLPVMALSPQEGESMLDMSAAPGGKTTYMAQLMRNTGMIVANDA 410
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N+V+ DGRQ+ K
Sbjct: 411 NVDRLKSVVGNIHRLGVTNAVICNYDGRQFPK 442
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+VKLVPTGLDFG EGF +++ K + P ++
Sbjct: 515 EENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKE-KRFHPSLK 557
>gi|320169159|gb|EFW46058.1| nucleolar family member protein [Capsaspora owczarzaki ATCC 30864]
Length = 746
Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 112/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E+ RP++IRTNTLKTRRRDLAQAL+NRGVNLDPIGKWSKVGLVI++S VPIGA
Sbjct: 272 VEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLVIFDSPVPIGA 331
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++Q AS + +C AP AALMKNTGV+FAND
Sbjct: 332 TPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAPGGKTAYCAALMKNTGVIFANDA 391
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
SK+R +A+V N HR+G+ N++V DGR + K
Sbjct: 392 SKDRLRALVANTHRMGITNTIVCNYDGRAFPK 423
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE V++YALRKR+VKLV TGLDFG GF ++R+ +
Sbjct: 496 EENEWVIDYALRKRNVKLVETGLDFGQPGFKSFRERR 532
>gi|81879892|sp|Q922K7.1|NOP2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
AltName: Full=Nucleolar protein 1; AltName:
Full=Nucleolar protein 2 homolog; AltName:
Full=Proliferating-cell nucleolar antigen p120; AltName:
Full=Proliferation-associated nucleolar protein p120
gi|13938070|gb|AAH07151.1| NOP2 nucleolar protein homolog (yeast) [Mus musculus]
Length = 793
Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQ L+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 283 IEFLEANEVPRPITLRTNTLKTRRRDLAQLLINRGVNLDPLGKWSKSGLVVYDSSVPIGA 342
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 343 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 402
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 403 NADRLKSVVGNLHRLGVTNTIISHYDGRQFPK 434
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 507 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QARRFHPTLR 549
>gi|391342347|ref|XP_003745482.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Metaseiulus occidentalis]
Length = 577
Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 110/150 (73%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
+LEA++ RPLTIRTNTLKTRRR+LAQAL+NRGVNLDPIG+WSKVGLVIYNS VPIGATP
Sbjct: 277 YLEANQVPRPLTIRTNTLKTRRRELAQALLNRGVNLDPIGEWSKVGLVIYNSQVPIGATP 336
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EYL GHY+LQGA+ +C AP ALMKNTGVLFAND
Sbjct: 337 EYLSGHYMLQGAASMLPVMALDPKENEKILDLCAAPGGKTSHIGALMKNTGVLFANDSQP 396
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R KA++ N HRLGV N+VV+ +DGR++ K
Sbjct: 397 DRCKAVIANLHRLGVTNAVVSTMDGRKFTK 426
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
PEENE V++YAL+ R V++V + L FG EG YR+++ + P M
Sbjct: 497 PEENECVIDYALKHRHVEIVDSSLKFGREGLPRYREHR-FNPNM 539
>gi|320169127|gb|EFW46026.1| ribosomal RNA small subunit methyltransferase b [Capsaspora
owczarzaki ATCC 30864]
Length = 732
Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 112/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E+ RP++IRTNTLKTRRRDLAQAL+NRGVNLDPIGKWSKVGLVI++S VPIGA
Sbjct: 303 VEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLVIFDSPVPIGA 362
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++Q AS + +C AP AALMKNTGV+FAND
Sbjct: 363 TPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAPGGKTAYCAALMKNTGVIFANDA 422
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
SK+R +A+V N HR+G+ N++V DGR + K
Sbjct: 423 SKDRLRALVANTHRMGITNTIVCNYDGRAFPK 454
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE V++YALRKR+VKLV TGLDFG GF ++R+ +
Sbjct: 527 EENEWVIDYALRKRNVKLVETGLDFGQPGFKSFRERR 563
>gi|115528363|gb|AAI24994.1| LOC100036868 protein [Xenopus laevis]
Length = 729
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 143/269 (53%), Gaps = 88/269 (32%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP+TIRTNTLKTRRRDLAQAL+NR VNLDP+GKWSK GLVIY+S+VPIGA
Sbjct: 310 VDFLEACEVHRPITIRTNTLKTRRRDLAQALINRSVNLDPLGKWSKTGLVIYDSSVPIGA 369
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTG + AND+
Sbjct: 370 TPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCAPGGKTSYIAQLMKNTGSVVANDM 429
Query: 105 SKERSKA-------------------------IVGNFHRL---------GVIN------- 123
+ ER ++ I+G F R+ G+I+
Sbjct: 430 NAERLRSVVGNLHRLGVTNCIISNYDGRQISKILGGFDRVLLDAPCSGTGIISKDPAVKT 489
Query: 124 -------------------SVVTCLDGR-QYG----------KPEENEAVVNYALRKRDV 153
S + LD + Q G EENE VV+YAL+KR+V
Sbjct: 490 NKSVQDIQRCAHIQKELVLSAIDALDAQSQTGGFLVYCTCSITVEENECVVDYALKKRNV 549
Query: 154 KLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
KLVPTGLDFG EGFV +++ + + P +++
Sbjct: 550 KLVPTGLDFGKEGFVRFKERR-FHPSLRQ 577
>gi|120537962|gb|AAI29564.1| LOC100036868 protein [Xenopus laevis]
Length = 744
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 143/269 (53%), Gaps = 88/269 (32%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP+TIRTNTLKTRRRDLAQAL+NR VNLDP+GKWSK GLVIY+S+VPIGA
Sbjct: 324 VDFLEACEVHRPITIRTNTLKTRRRDLAQALINRSVNLDPLGKWSKTGLVIYDSSVPIGA 383
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTG + AND+
Sbjct: 384 TPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCAPGGKTSYIAQLMKNTGSVVANDM 443
Query: 105 SKERSKA-------------------------IVGNFHRL---------GVIN------- 123
+ ER ++ I+G F R+ G+I+
Sbjct: 444 NAERLRSVVGNLHRLGVTNCIISNYDGRQISKILGGFDRVLLDAPCSGTGIISKDPAVKT 503
Query: 124 -------------------SVVTCLDGR-QYG----------KPEENEAVVNYALRKRDV 153
S + LD + Q G EENE VV+YAL+KR+V
Sbjct: 504 NKSVQDIQRCAHIQKELVLSAIDALDAQSQTGGFLVYCTCSITVEENECVVDYALKKRNV 563
Query: 154 KLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
KLVPTGLDFG EGFV +++ + + P +++
Sbjct: 564 KLVPTGLDFGKEGFVRFKERR-FHPSLRQ 591
>gi|296211182|ref|XP_002752299.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Callithrix jacchus]
Length = 810
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQ L+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 296 VEFLEANEVPRPVTLRTNTLKTRRRDLAQTLINRGVNLDPLGKWSKTGLVVYDSSVPIGA 355
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS +C AP A LMKNTGV+ AND
Sbjct: 356 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCSAPGGKTSYIAQLMKNTGVILANDA 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 416 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 447
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 520 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 562
>gi|7228247|emb|CAB77061.1| putative protein [Arabidopsis thaliana]
gi|7269512|emb|CAB79515.1| putative protein [Arabidopsis thaliana]
Length = 626
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 134/255 (52%), Gaps = 71/255 (27%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E +RP +IRTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGL++Y+S VPIGA
Sbjct: 256 MELIEAFEKKRPTSIRTNTLKTRRRDLADILLNRGVNLDPLSKWSKVGLIVYDSQVPIGA 315
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + AP AALMKNTG+++AN++
Sbjct: 316 TPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMKNTGIIYANEM 375
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEE------------------------- 139
R K++ N HR+GV N++V DGR+ +E
Sbjct: 376 KVPRLKSLSANLHRMGVTNTIVCNYDGREVISKDESVKTSKSADDIKKFAHLQKQLILGA 435
Query: 140 -------------------------NEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
NEAV++YAL+ RDVKLVP GLDFG GF +R
Sbjct: 436 IDLVDANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFREHR--- 492
Query: 175 SYRPEMQEKQERVSP 189
+ P + EK R P
Sbjct: 493 -FHPSL-EKTRRFYP 505
>gi|296211184|ref|XP_002752300.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Callithrix jacchus]
Length = 843
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQ L+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 329 VEFLEANEVPRPVTLRTNTLKTRRRDLAQTLINRGVNLDPLGKWSKTGLVVYDSSVPIGA 388
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS +C AP A LMKNTGV+ AND
Sbjct: 389 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCSAPGGKTSYIAQLMKNTGVILANDA 448
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+V++ DGRQ+ K
Sbjct: 449 NAERLKSVVGNLHRLGVTNTVISHYDGRQFPK 480
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 553 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 595
>gi|156383674|ref|XP_001632958.1| predicted protein [Nematostella vectensis]
gi|156220021|gb|EDO40895.1| predicted protein [Nematostella vectensis]
Length = 415
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+TIRTN+LKTRRRDLAQAL+NRGVNLDP+GKWSKVGLV+Y+S+VPIGA
Sbjct: 116 IEFLEANEVHRPVTIRTNSLKTRRRDLAQALINRGVNLDPVGKWSKVGLVVYDSSVPIGA 175
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QG+S +C AP AALMKNTG++ AND
Sbjct: 176 TPEYLAGHYMIQGSSSMLPVMALAPQEKERVLDMCAAPGGKTTYLAALMKNTGIVVANDA 235
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
KER+KA+V N HRLGV N+VV DGR + K
Sbjct: 236 KKERTKALVANIHRLGVTNTVVCNYDGRAFPK 267
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+E VV+YAL KR VKLVPTGLDFG EGF +R + + P ++
Sbjct: 340 EEDEWVVDYALSKRHVKLVPTGLDFGREGFSKFR-GRHFHPSLK 382
>gi|339253414|ref|XP_003371930.1| putative RNA methyltransferase NOL1 [Trichinella spiralis]
gi|316967738|gb|EFV52125.1| putative RNA methyltransferase NOL1 [Trichinella spiralis]
Length = 472
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/150 (59%), Positives = 110/150 (73%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FL+A+E+QRPL IR NTLK RR+DLAQ+L +RGVNL P+GKWSKVGLV+Y S VPIGA
Sbjct: 152 LEFLQANESQRPLVIRCNTLKIRRKDLAQSLTSRGVNLQPLGKWSKVGLVVYGSQVPIGA 211
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEY+ G YILQGAS + +C AP + +A+MKNTG+L ANDV
Sbjct: 212 TPEYMCGFYILQGASSFMPVLALDPQEDEKILDLCAAPGGKSSYISAMMKNTGILIANDV 271
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
S++R KAI NFHRLGV N++VTCLDGR +
Sbjct: 272 SRDRCKAITSNFHRLGVRNAMVTCLDGRHF 301
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAV++YALRKR+VKLV TGL FG EGFV +R+ + + P M+
Sbjct: 374 EENEAVIDYALRKRNVKLVDTGLPFGIEGFVRFREYR-FHPTMK 416
>gi|195170348|ref|XP_002025975.1| GL10113 [Drosophila persimilis]
gi|194110839|gb|EDW32882.1| GL10113 [Drosophila persimilis]
Length = 934
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LE+SE RPLTIRTNTLK RRR LA AL+NRGVNLDP+GKW+K GLVI+NS VP+GA
Sbjct: 356 MEYLESSEVARPLTIRTNTLKIRRRQLAGALINRGVNLDPLGKWTKEGLVIFNSQVPLGA 415
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYLGG+Y++QGAS +C AP AA MKN+GVLFAND
Sbjct: 416 TPEYLGGYYMIQGASSMLPVMALAPQENERILDMCSAPGGKGSHIAAAMKNSGVLFANDS 475
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R KA+V NFHRLGV+NSVV+C DG ++ K
Sbjct: 476 NRDRIKAVVANFHRLGVVNSVVSCEDGTKFRK 507
>gi|198460957|ref|XP_001361857.2| GA21153 [Drosophila pseudoobscura pseudoobscura]
gi|198137190|gb|EAL26436.2| GA21153 [Drosophila pseudoobscura pseudoobscura]
Length = 934
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 111/152 (73%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +LE+SE RPLTIRTNTLK RRR LA AL+NRGVNLDP+GKW+K GLVI+NS VP+GA
Sbjct: 356 MEYLESSEVARPLTIRTNTLKIRRRQLAGALINRGVNLDPLGKWTKEGLVIFNSQVPLGA 415
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYLGG+Y++QGAS +C AP AA MKN+GVLFAND
Sbjct: 416 TPEYLGGYYMIQGASSMLPVMALAPQENERILDMCSAPGGKGSHIAAAMKNSGVLFANDS 475
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R KA+V NFHRLGV+NSVV+C DG ++ K
Sbjct: 476 NRDRIKAVVANFHRLGVVNSVVSCEDGTKFRK 507
>gi|196007796|ref|XP_002113764.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
gi|190584168|gb|EDV24238.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
Length = 389
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 113/152 (74%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E +RP+TIRTNTLK+RRRDLAQAL+NRGVNLDPIG+WSKVGL++++S VPIGA
Sbjct: 75 IEFLEANEVERPVTIRTNTLKSRRRDLAQALINRGVNLDPIGEWSKVGLIVFDSPVPIGA 134
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS +C AP AALMKNTG++ ANDV
Sbjct: 135 TPEYLAGHYMLQGASSMLPVMALAAQPNEKVLDMCSAPGGKTTYIAALMKNTGMIVANDV 194
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+KER KA+ N HRLGV+N++V +GRQ+ K
Sbjct: 195 NKERCKALTANIHRLGVVNTIVCSENGRQFPK 226
>gi|443698466|gb|ELT98442.1| hypothetical protein CAPTEDRAFT_159088 [Capitella teleta]
Length = 708
Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 110/148 (74%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E QRP+TIRTNTLKTRRRDLAQAL+ RGVNLDPIGKWSKVGLV+Y++ VP+GA
Sbjct: 284 VEFLEANEVQRPVTIRTNTLKTRRRDLAQALITRGVNLDPIGKWSKVGLVVYDTQVPLGA 343
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAA---KLAAA----------LMKNTGVLFANDV 104
TPEYL GHY+LQG S AP +AAA LM+NTG L AND
Sbjct: 344 TPEYLAGHYMLQGGSSLLPVMSLAPQEGETILDMAAAPGGKTTYIGQLMRNTGKLVANDA 403
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
++ER+KA+V N HRLG+ N+V+TCL+G+
Sbjct: 404 NRERTKAVVANCHRLGLTNTVITCLNGK 431
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 32/36 (88%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQN 173
EENEAVVNYAL KR+VKLVPTGL FGT GF N+RQ+
Sbjct: 508 EENEAVVNYALSKRNVKLVPTGLSFGTPGFTNFRQH 543
>gi|327283575|ref|XP_003226516.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Anolis carolinensis]
Length = 707
Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 108/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLE++E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 300 VDFLESNEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 359
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQGAS CAP A LMKNTGV+ AND
Sbjct: 360 TPEYLAGQYMLQGASSLLPVMALAPQENERILDMCCAPGGKTSYIAQLMKNTGVILANDS 419
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R ++VGN HRLGV N+VV+ DGRQ+ K
Sbjct: 420 NADRLHSVVGNLHRLGVTNTVVSHCDGRQFPK 451
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +++ + + P ++
Sbjct: 524 EENEWVVDYALKKRNVRLVPTGLDFGKEGFTRFKERR-FHPSLK 566
>gi|449669945|ref|XP_002159649.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Hydra magnipapillata]
Length = 715
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E +RP+TIR+N+LKTRRRDLAQAL+NRGVNLDPIGKWSKVGLV+Y+S+VPIGA
Sbjct: 254 LEFLEACEVKRPITIRSNSLKTRRRDLAQALINRGVNLDPIGKWSKVGLVVYDSSVPIGA 313
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS +C AP +LMKNTGV+ AND
Sbjct: 314 TPEYLAGHYMIQGASSMLPVIALSPQENERILDMCSAPGGKTTYIGSLMKNTGVIVANDA 373
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
ER K+++GN HRLG+ N++V DGR + K
Sbjct: 374 KAERLKSLIGNIHRLGITNTIVCNYDGRSFPK 405
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YAL +R+VKLVPTG+DFG EG+ YR +
Sbjct: 478 EENEWVVDYALSRRNVKLVPTGIDFGKEGYTRYRDKR 514
>gi|148667388|gb|EDK99804.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
gi|148667389|gb|EDK99805.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
gi|148667390|gb|EDK99806.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
Length = 792
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 108/152 (71%), Gaps = 18/152 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 283 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKSGLVVYDSSVPIGA 342
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 343 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 402
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N++ DGRQ+ K
Sbjct: 403 NADRLKSVVGNLHRLGVTNTI--HYDGRQFPK 432
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 505 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QARRFHPTLR 547
>gi|242010929|ref|XP_002426210.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus
humanus corporis]
gi|212510261|gb|EEB13472.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus
humanus corporis]
Length = 730
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 108/144 (75%), Gaps = 16/144 (11%)
Query: 6 ASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYL 65
ASE RP+TIRTN+LKTRRRDLAQAL+NRGVNLDP+GKW+KVGLVI++S VPIGATPEYL
Sbjct: 245 ASEVHRPVTIRTNSLKTRRRDLAQALINRGVNLDPLGKWTKVGLVIFSSQVPIGATPEYL 304
Query: 66 GGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSKERS 109
GHY++QGAS +C AP AA+MKNTGVL ANDV+ +R+
Sbjct: 305 AGHYLIQGASSLLPVMALAPRENERILDMCSAPGGKGSHIAAVMKNTGVLVANDVNADRN 364
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQ 133
+A+VGNFHRLGV NS++ DGR+
Sbjct: 365 RAVVGNFHRLGVSNSIICSYDGRK 388
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV YAL+KRDVKLVPTGL+FG +GFVN+R N+
Sbjct: 464 EENECVVEYALKKRDVKLVPTGLEFGEQGFVNFRGNR 500
>gi|149049414|gb|EDM01868.1| rCG29759, isoform CRA_a [Rattus norvegicus]
gi|149049415|gb|EDM01869.1| rCG29759, isoform CRA_a [Rattus norvegicus]
gi|149049416|gb|EDM01870.1| rCG29759, isoform CRA_a [Rattus norvegicus]
Length = 420
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 102/141 (72%), Gaps = 16/141 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 278 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKSGLVVYDSSVPIGA 337
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 338 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 397
Query: 105 SKERSKAIVGNFHRLGVINSV 125
+ ER K++VGN HRLGV N++
Sbjct: 398 NAERLKSVVGNLHRLGVTNTI 418
>gi|406607907|emb|CCH40755.1| hypothetical protein BN7_289 [Wickerhamomyces ciferrii]
Length = 632
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 273 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGPWTKVGLQIFDSQVPIGA 332
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + C AP +ALMKNTG +FAND
Sbjct: 333 TPEYLAGHYILQAASSFLPCMALAPQENERVLDMASAPGGKTTYLSALMKNTGCIFANDS 392
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 393 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 424
>gi|384500230|gb|EIE90721.1| hypothetical protein RO3G_15432 [Rhizopus delemar RA 99-880]
Length = 608
Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQAL+NRGVNL+PIGKWSKVGL ++ S VPIGA
Sbjct: 276 IEFFEANEVARPVTIRTNTLKTRRRDLAQALINRGVNLEPIGKWSKVGLQVFESQVPIGA 335
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AAL KNTG++FAND
Sbjct: 336 TPEYLAGHYMLQAASSFLPVMALAPQPDERVLDMASAPGGKTTHIAALQKNTGMVFANDA 395
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R K++V N HRLGV N+VV DGR++ K
Sbjct: 396 TKDRLKSLVANIHRLGVKNAVVCNYDGREFPK 427
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVVNYAL KR +VKLVPT LDFG EGF +YR K++ P ++
Sbjct: 500 EENEAVVNYALSKRPNVKLVPTTLDFGREGFASYR-GKTFHPSLK 543
>gi|198431505|ref|XP_002123666.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 693
Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++FLEA+E RP+TIRTNTLKT+RRDLAQAL++RGVNLDP+ KW+KVGLV+Y S VPIGA
Sbjct: 258 IAFLEANEVNRPITIRTNTLKTKRRDLAQALISRGVNLDPLAKWTKVGLVVYESPVPIGA 317
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QGAS + AP A LMKN+G +F ND+
Sbjct: 318 TPEYLAGHYMIQGASSFVPVMALAPQPGERVLDMCAAPGGKTTYIAQLMKNSGFIFVNDI 377
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R KA+VGN HR+GV NSV++ D R +
Sbjct: 378 NKARLKAVVGNMHRMGVSNSVISNYDARSF 407
>gi|328767857|gb|EGF77905.1| hypothetical protein BATDEDRAFT_1711 [Batrachochytrium
dendrobatidis JAM81]
Length = 445
Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 106/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+ IR NTLKTRRRDLAQ L+NRGVNL+PIGKWSKVG+ +++S VPIGA
Sbjct: 156 IEFFEANEVARPVVIRANTLKTRRRDLAQCLINRGVNLEPIGKWSKVGIQVFDSPVPIGA 215
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ A+ + +C AP AALMKNTG LFAND+
Sbjct: 216 TPEYLAGHYMLQAAASFLPVMSLAPQSNERILDMCAAPGGKTTYIAALMKNTGCLFANDI 275
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK+R K++ N HR+GV N+VV C DG+Q+
Sbjct: 276 SKDRLKSLNANCHRMGVRNTVVCCYDGKQF 305
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE V+NYAL +R +VKLV +GLDFG EGF+++R K + P M
Sbjct: 380 EENEEVINYALNRRPNVKLVDSGLDFGREGFISFR-GKQFHPSM 422
>gi|307212380|gb|EFN88172.1| Putative RNA methyltransferase NOL1 [Harpegnathos saltator]
Length = 778
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 118/150 (78%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +LEASE QRP+TIRTNTL+TRRRDLA+AL+NRGVNLDP+GKW+KVGLV+Y+S VP+GA
Sbjct: 473 LEYLEASEVQRPMTIRTNTLRTRRRDLAEALINRGVNLDPLGKWTKVGLVVYSSQVPMGA 532
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+QGAS + +C AP A AALMKNTGVLFANDV
Sbjct: 533 TPEYLAGHYIIQGASSFLPVEALNPKENERILDMCAAPGGKASHIAALMKNTGVLFANDV 592
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+++R KA+VGNFHRLG++NSVV DGR++
Sbjct: 593 NQDRLKAVVGNFHRLGIVNSVVCSYDGRKF 622
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
PEENE +++YAL+KRDVKL+PT L+FGT+GF +YRQ++ + P ++
Sbjct: 696 PEENEWIIDYALKKRDVKLLPTDLEFGTDGFTSYRQHR-FHPSLK 739
>gi|345560409|gb|EGX43534.1| hypothetical protein AOL_s00215g270 [Arthrobotrys oligospora ATCC
24927]
Length = 745
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+SF EA+ET RPL IRTNTLKT RRDLAQ L+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 304 LSFFEANETPRPLVIRTNTLKTHRRDLAQVLINRGVTLEPVGKWSKVGLQVFESQVPLGA 363
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTG +FAND
Sbjct: 364 TPEYLAGHYILQAASSFLPVMALAPQENERCLDMAAAPGGKTTYMAALMKNTGCIFANDA 423
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K ++GN HRLGV N++V D R++ K
Sbjct: 424 NKNRAKGLIGNIHRLGVKNTIVCNYDAREFPK 455
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL+KR +VKLV TGL FG EGFV++R K++ +M+
Sbjct: 528 EENEGVVEYALKKRPNVKLVDTGLTFGVEGFVSFR-GKTFNDKMK 571
>gi|340897380|gb|EGS16970.1| RNA methyltransferase nop2-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 751
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 106/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL +++S VP+GA
Sbjct: 294 FAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSKVPLGA 353
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 354 TPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMAALMKNTGVIFANDP 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK R+K ++GN HRLGV N++V D R++
Sbjct: 414 SKSRAKGLIGNIHRLGVRNTIVCNYDAREF 443
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 146 YALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
YAL +R +VKLV TGL FG EGF +Y K++ P ++
Sbjct: 526 YALSRRPNVKLVETGLPFGKEGFTSY-MGKTFHPSLK 561
>gi|389633125|ref|XP_003714215.1| nucleolar protein NOP2 [Magnaporthe oryzae 70-15]
gi|351646548|gb|EHA54408.1| nucleolar protein NOP2 [Magnaporthe oryzae 70-15]
gi|440471521|gb|ELQ40524.1| nucleolar protein NOP2 [Magnaporthe oryzae Y34]
gi|440481650|gb|ELQ62210.1| nucleolar protein NOP2 [Magnaporthe oryzae P131]
Length = 678
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 105/149 (70%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQALVNRGV L+P+GKWSKVGL I++S VP+GA
Sbjct: 302 FAFFEANETPRPVVIRTNTLRTSRRDLAQALVNRGVTLEPVGKWSKVGLQIFDSNVPLGA 361
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYLGGHYILQ AS + +C AP AALMKNTGV+ AND
Sbjct: 362 TPEYLGGHYILQAASSFLPVMALCPQENERVLDMSAAPGGKTTHCAALMKNTGVIIANDP 421
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+K RSK ++GN HRLGV NS+V D R+
Sbjct: 422 NKARSKGLIGNIHRLGVKNSIVCNYDARE 450
>gi|365985658|ref|XP_003669661.1| hypothetical protein NDAI_0D01050 [Naumovozyma dairenensis CBS 421]
gi|343768430|emb|CCD24418.1| hypothetical protein NDAI_0D01050 [Naumovozyma dairenensis CBS 421]
Length = 625
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQALVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 266 MEFFEANEIARPITIRTNTLKTRRRDLAQALVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 325
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL G+YILQ AS + PH R +AA ALMKNTG +FAND
Sbjct: 326 TPEYLAGNYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISALMKNTGTVFANDA 385
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 386 NKNRTKSLIANIHRLGCTNTIVCNYDAREFPK 417
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV TGL G +GF ++R K++ P ++
Sbjct: 490 EEDEAVVDYALRKRPNVKLVDTGLAIGKDGFTSFR-GKNFHPSIK 533
>gi|443899077|dbj|GAC76408.1| tRNA and rRNA cytosine-C5-methylase [Pseudozyma antarctica T-34]
Length = 657
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIR NTL+TRRRDLAQAL+NRGVNL+PIG WSKVGL ++ S+VPIGA
Sbjct: 321 IEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLEPIGAWSKVGLQVFESSVPIGA 380
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + C AP + +ALM+NTG +FAND
Sbjct: 381 TPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPGGKSTYLSALMQNTGTVFANDS 440
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R K++V N HRLG N VV DGRQ+ K
Sbjct: 441 NKNRIKSLVANIHRLGCKNVVVCNYDGRQFPK 472
>gi|325190500|emb|CCA24999.1| ribosomal RNA methyltransferase nop2like protein put [Albugo
laibachii Nc14]
Length = 597
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 97/149 (65%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RPL IRTNTLK RRRDLAQ L+ RGVNLDP+ KWSKVGL IY+S VPIGA
Sbjct: 207 LEFIEANEQTRPLVIRTNTLKARRRDLAQHLIQRGVNLDPLAKWSKVGLKIYDSPVPIGA 266
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS CAP A LMKNTG + AND+
Sbjct: 267 TPEYLAGHYMLQSASSMCAVVALAPQLNERVLDMACAPGGKTTYIAQLMKNTGTVIANDL 326
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
K+R KA V N HRLGV N V C DGRQ
Sbjct: 327 KKQRLKATVANLHRLGVRNCSVCCYDGRQ 355
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAV++YAL KR VKLV GLD G GF Y Q++ + P +
Sbjct: 431 EENEAVIDYALGKRCVKLVDPGLDHGKSGFTRY-QHQRFHPSL 472
>gi|323335828|gb|EGA77107.1| Nop2p [Saccharomyces cerevisiae Vin13]
Length = 618
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|256273278|gb|EEU08219.1| Nop2p [Saccharomyces cerevisiae JAY291]
Length = 618
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|365758690|gb|EHN00521.1| Nop2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 619
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 260 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGPWTKVGLQIFDSQVPIGA 319
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 320 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 379
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 380 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 411
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVVNYALRKR +VKLV TGL G EGF +YR K++ P ++
Sbjct: 484 EEDEAVVNYALRKRPNVKLVETGLAIGKEGFTSYR-GKNFHPSVK 527
>gi|259149299|emb|CAY82541.1| Nop2p [Saccharomyces cerevisiae EC1118]
Length = 618
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|401842841|gb|EJT44878.1| NOP2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 619
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 260 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGPWTKVGLQIFDSQVPIGA 319
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 320 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 379
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 380 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 411
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVVNYALRKR +VKLV TGL G EGF +YR K++ P ++
Sbjct: 484 EEDEAVVNYALRKRPNVKLVETGLAIGKEGFTSYR-GKNFHPSVK 527
>gi|322692462|gb|EFY84371.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium acridum CQMa
102]
Length = 657
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 105/153 (68%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 290 FAFFEANETARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSVPLGA 349
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + C AP AA+MKNTGV+ AND
Sbjct: 350 TPEYLAGHYILQAASSFLPCMALDPQENERVLDMAAAPGGKTTYMAAMMKNTGVIIANDP 409
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
+K R+K ++GN HRLG N +V+ D R++ KP
Sbjct: 410 NKARAKGLIGNIHRLGARNVIVSNYDAREFPKP 442
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL++R +VKLV TGL FG EGF ++ K + P ++
Sbjct: 514 EENEQVVQYALKRRPNVKLVDTGLAFGKEGFTSF-MGKRFDPSLR 557
>gi|365763345|gb|EHN04874.1| Nop2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 602
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|301119835|ref|XP_002907645.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora
infestans T30-4]
gi|262106157|gb|EEY64209.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora
infestans T30-4]
Length = 645
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 100/149 (67%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RPL IRTNTLK RRRDLAQAL+ RGVNLDP+ KWSKVGL IY+S VPIGA
Sbjct: 227 VEFVEANEQPRPLVIRTNTLKARRRDLAQALIQRGVNLDPLAKWSKVGLKIYDSPVPIGA 286
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS CAP A LMKNTG + AND+
Sbjct: 287 TPEYLAGHYMLQSASSICAVMALAPQMNERVLDMACAPGGKTTYIAQLMKNTGTVIANDL 346
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
K+R KA V N HRLGV N+ V+C DGR+
Sbjct: 347 KKQRLKATVANLHRLGVKNTSVSCYDGRK 375
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+ENE+VV+YALRKR VKLV TGLD G GF Y+Q + + P +Q
Sbjct: 451 DENESVVDYALRKRCVKLVDTGLDHGKPGFTRYQQQR-FHPSVQ 493
>gi|348690059|gb|EGZ29873.1| hypothetical protein PHYSODRAFT_476935 [Phytophthora sojae]
Length = 481
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 100/149 (67%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RPL IRTNTLK RRRDLAQAL+ RGVNLDP+ KWSKVGL IY+S VPIGA
Sbjct: 94 VEFVEANEQPRPLVIRTNTLKARRRDLAQALIQRGVNLDPLAKWSKVGLKIYDSPVPIGA 153
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS CAP A LMKNTG + AND+
Sbjct: 154 TPEYLAGHYMLQSASSICAVMALAPQMNERVLDMACAPGGKTTYIAQLMKNTGTIIANDL 213
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
K+R KA V N HRLGV N+ V+C DGR+
Sbjct: 214 KKQRLKATVANLHRLGVKNTSVSCYDGRK 242
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+ENE+VV+YALRKR VKLV TGLD G GF Y+Q + + P +Q
Sbjct: 318 DENESVVDYALRKRCVKLVDTGLDHGKPGFTRYQQQR-FHPSVQ 360
>gi|398365157|ref|NP_014338.3| Nop2p [Saccharomyces cerevisiae S288c]
gi|730166|sp|P40991.1|NOP2_YEAST RecName: Full=Putative ribosomal RNA methyltransferase Nop2;
AltName: Full=Nucleolar protein 2
gi|576442|emb|CAA57979.1| Nop2p [Saccharomyces cerevisiae]
gi|1098483|gb|AAA99650.1| Ynl2428p [Saccharomyces cerevisiae]
gi|1301934|emb|CAA95934.1| NOP2 [Saccharomyces cerevisiae]
gi|190409050|gb|EDV12315.1| nucleolar protein NOP2 [Saccharomyces cerevisiae RM11-1a]
gi|207341676|gb|EDZ69664.1| YNL061Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814591|tpg|DAA10485.1| TPA: Nop2p [Saccharomyces cerevisiae S288c]
gi|392296931|gb|EIW08032.1| Nop2p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1093321|prf||2103264A nuclear protein
Length = 618
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|323307446|gb|EGA60720.1| Nop2p [Saccharomyces cerevisiae FostersO]
Length = 618
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|51013571|gb|AAT93079.1| YNL061W [Saccharomyces cerevisiae]
Length = 618
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|367012029|ref|XP_003680515.1| hypothetical protein TDEL_0C04150 [Torulaspora delbrueckii]
gi|359748174|emb|CCE91304.1| hypothetical protein TDEL_0C04150 [Torulaspora delbrueckii]
Length = 614
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQALVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 256 MEFFEANEIARPITIRTNTLKTRRRDLAQALVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 315
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL G+YILQ AS + PH R +AA ALMKNTG +FAND
Sbjct: 316 TPEYLAGNYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISALMKNTGCVFANDA 375
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 376 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 407
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+E VV+YALRKR +VKLV GL G EGF +YR K + P ++
Sbjct: 480 EEDEMVVDYALRKRPNVKLVEAGLAIGKEGFTSYR-GKKFHPSLK 523
>gi|151944473|gb|EDN62751.1| nucleolar protein [Saccharomyces cerevisiae YJM789]
gi|349580877|dbj|GAA26036.1| K7_Nop2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 618
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>gi|71005896|ref|XP_757614.1| hypothetical protein UM01467.1 [Ustilago maydis 521]
gi|46097107|gb|EAK82340.1| hypothetical protein UM01467.1 [Ustilago maydis 521]
Length = 674
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIR NTL+TRRRDLAQAL+NRGVNL+PIG WSKVGL ++ S+VPIGA
Sbjct: 318 IEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLEPIGAWSKVGLQVFESSVPIGA 377
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + C AP + +ALM+NTG +FAND
Sbjct: 378 TPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPGGKSTYLSALMQNTGTVFANDS 437
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R K++V N HRLG N VV DGRQ+ K
Sbjct: 438 NKNRIKSLVANIHRLGCKNVVVCNYDGRQFPK 469
>gi|401623874|gb|EJS41955.1| nop2p [Saccharomyces arboricola H-6]
Length = 618
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV TGL G EGF +YR K + P ++
Sbjct: 483 EEDEAVVDYALRKRPNVKLVETGLAIGKEGFTSYR-GKKFHPSVK 526
>gi|126140362|ref|XP_001386703.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
gi|126093987|gb|ABN68674.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
Length = 625
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL +++S VPIGA
Sbjct: 270 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQVFDSQVPIGA 329
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP R +AA ALMKNTG +FAND
Sbjct: 330 TPEYLAGHYILQAASSFLPVIALAPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDA 389
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 390 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 421
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENE+VV+YALRKR +VKL+ GL+ G EGF +YR K + P +
Sbjct: 494 DENESVVDYALRKRPNVKLIEAGLEIGKEGFTSYR-GKHFNPSL 536
>gi|171696268|ref|XP_001913058.1| hypothetical protein [Podospora anserina S mat+]
gi|170948376|emb|CAP60540.1| unnamed protein product [Podospora anserina S mat+]
Length = 747
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL +++S VP+GA
Sbjct: 296 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNVPLGA 355
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 356 TPEYLAGHYILQAASSFLPVMALCPQENERCLDMASAPGGKTTHMAALMKNTGVIFANDP 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK R+K ++GN HRLGV N++V D R++
Sbjct: 416 SKARAKGLIGNIHRLGVRNTIVCNYDAREF 445
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +V+LV TGL FG EGF ++ K + P ++
Sbjct: 520 EENEQVVAYALSRRPNVRLVETGLPFGKEGFTSF-MGKEFHPSLK 563
>gi|363750754|ref|XP_003645594.1| hypothetical protein Ecym_3284 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889228|gb|AET38777.1| Hypothetical protein Ecym_3284 [Eremothecium cymbalariae
DBVPG#7215]
Length = 606
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 248 LEFFEANEVSRPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGTWTKVGLQIFDSQVPIGA 307
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 308 TPEYLAGHYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 367
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 368 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 399
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAVV+YALRKR +VKLV +GL G EGF +YR K + P +
Sbjct: 472 EENEAVVDYALRKRPNVKLVDSGLAIGKEGFTSYR-GKKFHPSI 514
>gi|344304004|gb|EGW34253.1| hypothetical protein SPAPADRAFT_59678, partial [Spathaspora
passalidarum NRRL Y-27907]
Length = 581
Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 242 MEFFEANEIARPITIRTNTLKTRRRDLAQKLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 301
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP R +AA ALMKNTG +FAND
Sbjct: 302 TPEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDA 361
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 362 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 393
>gi|50310429|ref|XP_455234.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644370|emb|CAG97942.1| KLLA0F03399p [Kluyveromyces lactis]
Length = 619
Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 256 MEFFEANEIARPVTIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 315
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +A+MKNTG +FAND
Sbjct: 316 TPEYLAGHYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 375
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 376 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 407
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+ENEAVV+YALRKR +VKLV T L G EGF +YR K++ P ++
Sbjct: 480 DENEAVVDYALRKRPNVKLVETKLAIGKEGFTSYR-GKTFHPSVK 523
>gi|322705288|gb|EFY96875.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium anisopliae
ARSEF 23]
Length = 659
Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 105/153 (68%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 291 FAFFEANETARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSVPLGA 350
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + C AP AA+MKNTGV+ AND
Sbjct: 351 TPEYLAGHYILQAASSFLPCMALDPQENERVLDMAAAPGGKTTYMAAMMKNTGVIIANDP 410
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
+K R+K ++GN HRLG N +V+ D R++ KP
Sbjct: 411 NKARAKGLIGNIHRLGARNVIVSNYDAREFPKP 443
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YALR+R +VKLV TGL FG EGF ++ K + P ++
Sbjct: 515 EENEQVVQYALRRRPNVKLVDTGLAFGKEGFTSF-MGKKFDPSLR 558
>gi|255721331|ref|XP_002545600.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
gi|240136089|gb|EER35642.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
Length = 623
Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQALVN+GVNL PIG W+KVGL I++S VPIGA
Sbjct: 268 MEFFEANEIARPVTIRTNTLKTRRRDLAQALVNKGVNLQPIGSWTKVGLQIFDSQVPIGA 327
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 328 TPEYLAGHYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 387
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 388 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 419
>gi|603587|emb|CAA58502.1| Yna1p [Saccharomyces cerevisiae]
Length = 473
Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 114 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 173
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 174 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 233
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 234 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 265
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 338 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 381
>gi|323303251|gb|EGA57049.1| Nop2p [Saccharomyces cerevisiae FostersB]
Length = 509
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
>gi|403337775|gb|EJY68110.1| Ribosomal RNA methyltransferase nop2-like protein [Oxytricha
trifallax]
Length = 715
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 106/149 (71%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E QRP+TIRTNTLKT+R+DLA+ L+ RGVNLDP+ +WSKVGL IY+S VPIGA
Sbjct: 184 LEFIEANENQRPMTIRTNTLKTKRKDLAKTLIQRGVNLDPVAEWSKVGLKIYDSAVPIGA 243
Query: 61 TPEYLGGHYILQGASKYW---ICAPHRAAK---LAAA----------LMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP K +AAA LMKNTGVL AND+
Sbjct: 244 TPEYLAGHYILQSASSFLPVIALAPQPNEKILDMAAAPGGKTTYIAQLMKNTGVLVANDL 303
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
KER K++ N HRLGV N+VV DGR+
Sbjct: 304 KKERLKSLNANLHRLGVTNTVVINHDGRK 332
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE VV+YAL+ R VKLV TG++ G GF +++ K + P +
Sbjct: 408 EENEWVVDYALKSRYVKLVETGVEIGEPGFTKHKE-KRFHPSL 449
>gi|343428144|emb|CBQ71674.1| probable NOP2-nucleolar protein [Sporisorium reilianum SRZ2]
Length = 666
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIR NTL+TRRRDLAQAL+NRGVNL+PIG WSKVGL ++ S+VP+GA
Sbjct: 315 IEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLEPIGAWSKVGLQVFESSVPVGA 374
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + C AP + +ALM+NTG +FAND
Sbjct: 375 TPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPGGKSTYLSALMQNTGTVFANDS 434
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R K++V N HRLG N VV DGRQ+ K
Sbjct: 435 NKNRIKSLVANIHRLGCKNVVVCNYDGRQFPK 466
>gi|167521191|ref|XP_001744934.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776548|gb|EDQ90167.1| predicted protein [Monosiga brevicollis MX1]
Length = 585
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 106/149 (71%), Gaps = 16/149 (10%)
Query: 4 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPE 63
LEA+E +RP+TIRTNTLKTRRRDLAQAL+NRGV+LDP+GKWSKVGLVI+ S+VPIGATPE
Sbjct: 169 LEANEVERPVTIRTNTLKTRRRDLAQALINRGVSLDPVGKWSKVGLVIFESSVPIGATPE 228
Query: 64 YLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKE 107
YL GHY++Q AS + AP AA+MKNTG++ ND +K
Sbjct: 229 YLAGHYLVQSASSFLPVMALSPLPNEKVLDMAAAPGGKTTHMAAMMKNTGMVVVNDFNKA 288
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R+K++ GN HRLG N+V+ DGR++ K
Sbjct: 289 RTKSLFGNIHRLGCTNTVICNYDGREFPK 317
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
+ENE+VV+YALRKR+VKLV TGLDFG GF N+R K + P + EK R P
Sbjct: 390 DENESVVDYALRKRNVKLVDTGLDFGRPGFTNFR-GKRFHPTL-EKTRRYYP 439
>gi|323331975|gb|EGA73387.1| Nop2p [Saccharomyces cerevisiae AWRI796]
Length = 485
Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 114 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 173
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 174 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 233
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 234 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 265
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 338 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 381
>gi|45187619|ref|NP_983842.1| ADL254Wp [Ashbya gossypii ATCC 10895]
gi|44982357|gb|AAS51666.1| ADL254Wp [Ashbya gossypii ATCC 10895]
Length = 603
Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VP+GA
Sbjct: 246 MEFFEANEVARPVTIRTNTLKTRRRDLAQNLVNRGVNLQPIGSWTKVGLQIFDSQVPVGA 305
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 306 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 365
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 366 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 397
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSY 176
EENEAVV+YALRKR +VKLV TGL G EGF +YR K +
Sbjct: 470 EENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKKFH 509
>gi|403217478|emb|CCK71972.1| hypothetical protein KNAG_0I01870 [Kazachstania naganishii CBS
8797]
Length = 629
Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQ+LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 271 LEFFEANEIARPITIRTNTLKTRRRDLAQSLVNRGVNLQPIGNWTKVGLQIFDSQVPIGA 330
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +A+MKNTG +FAND
Sbjct: 331 TPEYLAGHYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 390
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 391 NKNRTKSLIANIHRLGCTNTIVCNYDAREFPK 422
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV TGL G EGF ++R K + P ++
Sbjct: 495 EEDEAVVDYALRKRPNVKLVETGLLIGKEGFTSFR-GKKFHPSVK 538
>gi|448084192|ref|XP_004195543.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
gi|359376965|emb|CCE85348.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
Length = 615
Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLK RRRDLAQALVNRGVNL PIG W+KVGL +++S VPIGA
Sbjct: 260 MEFFEANEIARPITIRTNTLKARRRDLAQALVNRGVNLQPIGPWTKVGLQVFDSQVPIGA 319
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 320 TPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDA 379
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 380 NKSRTKSLIANIHRLGCKNTIVCNYDAREFPK 411
>gi|374107055|gb|AEY95963.1| FADL254Wp [Ashbya gossypii FDAG1]
Length = 603
Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VP+GA
Sbjct: 246 MEFFEANEVARPVTIRTNTLKTRRRDLAQNLVNRGVNLQPIGSWTKVGLQIFDSQVPVGA 305
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 306 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 365
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 366 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 397
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSY 176
EENEAVV+YALRKR +VKLV TGL G EGF +YR K +
Sbjct: 470 EENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYRGKKFH 509
>gi|448079709|ref|XP_004194444.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
gi|359375866|emb|CCE86448.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
Length = 609
Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLK RRRDLAQALVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 254 MEFFEANEIARPITIRTNTLKARRRDLAQALVNRGVNLQPIGPWTKVGLQIFDSQVPIGA 313
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 314 TPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDA 373
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 374 NKSRTKSLIANIHRLGCKNTIVCNYDAREFPK 405
>gi|358339374|dbj|GAA47450.1| ribosomal RNA methyltransferase Nop2 [Clonorchis sinensis]
Length = 700
Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 110/150 (73%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RP+T+RTNTLKTRRR+LAQAL+NRGVNLDP+ WS+VGLV+Y+S VP+GA
Sbjct: 415 IEFIEANEIDRPVTLRTNTLKTRRRELAQALINRGVNLDPLEPWSRVGLVVYSSQVPLGA 474
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS +C AP A A LMKNTG LFAN++
Sbjct: 475 TPEYLAGHYILQGASSMLPVMALAPKPGERILDLCAAPGGKATYIAQLMKNTGTLFANEL 534
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+ R+KA++GN HR+G++N++V DGR++
Sbjct: 535 NPTRAKALIGNCHRMGIVNTIVCVEDGRKF 564
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENEA++ YA++KR + +V T L FG GF+N++ + P+M E+ R P
Sbjct: 635 EENEAIIWYAMKKRKLAIVETKL-FGENGFINFK-GFHFHPKM-ERTRRYYP 683
>gi|336464921|gb|EGO53161.1| hypothetical protein NEUTE1DRAFT_150546 [Neurospora tetrasperma
FGSC 2508]
Length = 746
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 105/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL +++S VP+GA
Sbjct: 294 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNVPLGA 353
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 354 TPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIFANDP 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK+R+K ++GN HRLG N +V D R++
Sbjct: 414 SKQRAKGLIGNIHRLGARNVIVCNYDAREF 443
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +VKLV TGL FG EGF ++ KS+ P ++
Sbjct: 518 EENEQVVAYALSRRPNVKLVETGLAFGKEGFTSF-MGKSFHPSLK 561
>gi|340379018|ref|XP_003388024.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Amphimedon queenslandica]
Length = 566
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 107/152 (70%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FL+A ET RP+TIRTNTLKTRRRDLA AL++RGVNLDPIG WSKVGLVIY+S VPIGA
Sbjct: 252 LEFLDACETPRPVTIRTNTLKTRRRDLAGALISRGVNLDPIGDWSKVGLVIYDSQVPIGA 311
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y++QGAS +C AP A AALMKNTG+L ND
Sbjct: 312 TPEYLSGKYMMQGASSLLPVMALAPQVNERILDMCAAPGGKATYIAALMKNTGLLVCNDY 371
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
KER K+++ N +R+GV N++V DGR++ K
Sbjct: 372 KKERCKSLIANIYRMGVQNTIVCNYDGRKFTK 403
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE V++YAL +R+VK+V TGL+FG GF +R+ K + P +
Sbjct: 476 EENEGVIDYALSRRNVKVVDTGLNFGVSGFTRFRE-KRFHPSL 517
>gi|213405703|ref|XP_002173623.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
gi|212001670|gb|EEB07330.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
Length = 617
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 107/155 (69%), Gaps = 18/155 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIRTNTLKT RR+LAQAL+NRGVNL+PIGKW+KVGL +++S VPIGA
Sbjct: 256 IEFFEANETPRPMTIRTNTLKTNRRELAQALINRGVNLEPIGKWTKVGLQVFDSQVPIGA 315
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AAL KN+GV+FAND
Sbjct: 316 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMSSAPGGKVTYIAALQKNSGVIFANDS 375
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEE 139
+K R KA+ N HRLGV N++V DGR++ PEE
Sbjct: 376 NKARIKALSANIHRLGVRNTIVCNYDGRKF--PEE 408
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+E+EAV+ YAL+KR +VKLV TGL+FG EGF YR+ K + P ++
Sbjct: 481 DEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRYRE-KRFHPSLK 524
>gi|85119485|ref|XP_965642.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Neurospora crassa OR74A]
gi|28927454|gb|EAA36406.1| hypothetical protein NCU02511 [Neurospora crassa OR74A]
Length = 746
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 105/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL +++S VP+GA
Sbjct: 294 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNVPLGA 353
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 354 TPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIFANDP 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK+R+K ++GN HRLG N +V D R++
Sbjct: 414 SKQRAKGLIGNIHRLGARNVIVCNYDAREF 443
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +VKLV TGL FG EGF ++ KS+ P ++
Sbjct: 518 EENEQVVAYALSRRPNVKLVETGLAFGKEGFTSF-MGKSFHPSLK 561
>gi|367044302|ref|XP_003652531.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Thielavia terrestris NRRL
8126]
gi|346999793|gb|AEO66195.1| hypothetical protein THITE_2114134 [Thielavia terrestris NRRL 8126]
Length = 712
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 297 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESNVPLGA 356
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 357 TPEYLAGHYILQAASSFLPVMALCPQENERVLDMAAAPGGKTTHMAALMKNTGVIFANDP 416
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K ++GN HRLGV N++V D R++ K
Sbjct: 417 NKARAKGLIGNIHRLGVRNAIVCNYDAREFPK 448
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +VKLV TGL FG EGF +Y K++ P ++
Sbjct: 521 EENEQVVAYALSRRPNVKLVETGLPFGKEGFTSY-MGKTFHPSLK 564
>gi|350297026|gb|EGZ78003.1| NOL1/NOP2/sun family putative RNA met [Neurospora tetrasperma FGSC
2509]
Length = 746
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 105/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL +++S VP+GA
Sbjct: 294 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNVPLGA 353
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 354 TPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIFANDP 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK+R+K ++GN HRLG N +V D R++
Sbjct: 414 SKQRAKGLIGNIHRLGARNVIVCNYDAREF 443
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +VKLV TGL FG EGF ++ KS+ P ++
Sbjct: 518 EENEQVVAYALSRRPNVKLVETGLAFGKEGFTSF-MGKSFHPSLK 561
>gi|444320603|ref|XP_004180958.1| hypothetical protein TBLA_0E03850 [Tetrapisispora blattae CBS 6284]
gi|387514001|emb|CCH61439.1| hypothetical protein TBLA_0E03850 [Tetrapisispora blattae CBS 6284]
Length = 632
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQALVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 273 IEFFEANEVSRPITIRTNTLKTRRRDLAQALVNRGVNLQPIGAWTKVGLQIFDSQVPIGA 332
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+YILQ AS + AP +ALMKNTG +FAND
Sbjct: 333 TPEYLAGNYILQAASSFLPVIALDPQENERVLDMASAPGGKTTYISALMKNTGCIFANDA 392
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 393 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 424
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV TGL G EGF +YR K + P ++
Sbjct: 497 EEDEAVVDYALRKRPNVKLVETGLAIGKEGFTSYR-GKKFHPSVK 540
>gi|388852682|emb|CCF53600.1| probable NOP2-nucleolar protein [Ustilago hordei]
Length = 681
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIR NTL+TRRRDLAQAL+NRGVNL+P+G WSKVGL ++ S+VP+GA
Sbjct: 326 IEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVNLEPLGAWSKVGLQVFESSVPVGA 385
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + C AP + +ALM+NTG +FAND
Sbjct: 386 TPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASAPGGKSTYLSALMQNTGTVFANDS 445
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R K++V N HRLG N VV DGRQ+ K
Sbjct: 446 NKNRIKSLVANIHRLGCKNVVVCNYDGRQFPK 477
>gi|19113319|ref|NP_596527.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe
972h-]
gi|74582834|sp|O94268.1|NOP2_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase nop2;
AltName: Full=Nucleolar protein 2
gi|3810844|emb|CAA21805.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe]
Length = 608
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 104/150 (69%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKT+RR+LAQAL+NRGVNL+PIGKWSKVGL ++ S VPIGA
Sbjct: 253 VEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQVPIGA 312
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AAL KNTG++FAND
Sbjct: 313 TPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDS 372
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+KA+ N HRLGV N++V DGR++
Sbjct: 373 NKARTKALSANIHRLGVRNAIVCNYDGRKF 402
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+E+EAV+ YAL+KR +VKLV TGL+FG EGF +R+ K + P ++
Sbjct: 478 DEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRFRE-KRFHPSLK 521
>gi|336272654|ref|XP_003351083.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Sordaria macrospora k-hell]
gi|380093642|emb|CCC08606.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 744
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 105/150 (70%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL +++S VP+GA
Sbjct: 286 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFDSNVPLGA 345
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 346 TPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHMAALMKNTGVIFANDP 405
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK+R+K ++GN HRLG N +V D R++
Sbjct: 406 SKQRAKGLIGNIHRLGARNVIVCNYDAREF 435
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +VKLV TGL FG EGF ++ KS+ P ++
Sbjct: 510 EENEQVVAYALSRRPNVKLVETGLAFGKEGFTSF-MGKSFHPSLK 553
>gi|50546513|ref|XP_500726.1| YALI0B10560p [Yarrowia lipolytica]
gi|49646592|emb|CAG82971.1| YALI0B10560p [Yarrowia lipolytica CLIB122]
Length = 609
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIR NTLKTRRRDLAQ+LVNRGVNL PIGKW+KVGL I++S VPIGA
Sbjct: 244 IEFFEANEVPRPVTIRANTLKTRRRDLAQSLVNRGVNLQPIGKWTKVGLQIFDSAVPIGA 303
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +P +ALMKNTG++FANDV
Sbjct: 304 TPEYLCGHYILQAASSFLPVMAMDPQEGERVLDMAASPGGKTTYISALMKNTGMVFANDV 363
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
SK R K+++ N HRLG N+VV D R++ K
Sbjct: 364 SKPRIKSLIANIHRLGCKNTVVCNYDAREFPK 395
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV+YALRKR +V+LV TGL+ G EGF ++R K++ P+++
Sbjct: 468 EENEAVVDYALRKRPNVRLVETGLEIGKEGFTSFR-GKTFSPKLK 511
>gi|302915517|ref|XP_003051569.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Nectria haematococca mpVI
77-13-4]
gi|256732508|gb|EEU45856.1| hypothetical protein NECHADRAFT_38896 [Nectria haematococca mpVI
77-13-4]
Length = 673
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 297 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESNVPLGA 356
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + C AP AA+MKNTGV+ AND
Sbjct: 357 TPEYLAGHYILQAASSFLPCMALEPQENERVLDMAAAPGGKTTYMAAMMKNTGVIVANDP 416
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
+K R+K ++GN HRLG N VV+ D R++ KP
Sbjct: 417 NKARAKGLIGNIHRLGTRNVVVSNYDAREFPKP 449
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +V+LV +GL FG EGF +Y K + P M+
Sbjct: 521 EENEQVVQYALSRRPNVRLVESGLPFGKEGFTSY-MGKKFDPSMR 564
>gi|367019554|ref|XP_003659062.1| hypothetical protein MYCTH_2295642 [Myceliophthora thermophila ATCC
42464]
gi|347006329|gb|AEO53817.1| hypothetical protein MYCTH_2295642 [Myceliophthora thermophila ATCC
42464]
Length = 733
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 104/150 (69%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 301 FAFFEANETARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSVPLGA 360
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP AALMKNTGV+FAND
Sbjct: 361 TPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMAALMKNTGVIFANDP 420
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+K ++GN HRLG N +V D R++
Sbjct: 421 NKSRAKGLIGNIHRLGARNVIVCNYDAREF 450
>gi|303273764|ref|XP_003056234.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462318|gb|EEH59610.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 353
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M LEA+ETQRP+T+RTNTLK RRR+LA AL+NRGVNLDPIGKWSKVGL++Y+S VPIGA
Sbjct: 66 MELLEANETQRPVTLRTNTLKCRRRELAAALINRGVNLDPIGKWSKVGLLVYDSRVPIGA 125
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQ AS + C AP AALM+NTG +FAN+
Sbjct: 126 TPEYMAGHYMLQSASSFLPCMALAPQDGERVLDMAAAPGGKTTYVAALMRNTGQIFANEF 185
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
K+R ++V N R+G N+VV DGRQ K
Sbjct: 186 QKKRLSSLVANLQRMGCTNAVVCNYDGRQLPK 217
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENEAVV+Y L+KRDVKLV TGL+FG E F +YR K++ P + K R P
Sbjct: 290 EENEAVVDYLLKKRDVKLVSTGLEFGREAFASYR-GKNFHPSVT-KARRFYP 339
>gi|402085166|gb|EJT80064.1| nucleolar protein NOP2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 715
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 104/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQALVNRGV L+P+GKWSKVGL I+++ VP+GA
Sbjct: 301 FAFFEANETPRPVVIRTNTLRTSRRDLAQALVNRGVTLEPVGKWSKVGLQIFDANVPLGA 360
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYLGGHYILQ AS + +C AP AALMKNTGV+ AND
Sbjct: 361 TPEYLGGHYILQAASSFLPVMALCPQEGERVLDMAAAPGGKTTHCAALMKNTGVIIANDP 420
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N +V+ D R+
Sbjct: 421 SKSRAKGLIGNIHRLGAKNVIVSNYDARE 449
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VVNYAL +R +V+L+ TGL FG EGF N+ K + P ++
Sbjct: 521 EENEQVVNYALSRRPNVELLETGLPFGKEGFTNF-MGKKFHPSLK 564
>gi|302754002|ref|XP_002960425.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii]
gi|300171364|gb|EFJ37964.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii]
Length = 579
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 108/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+ET RPL++RTNTLKTRRRDLA L+NRGVNLDPIGKWSKVGLV+Y+S VP+GA
Sbjct: 198 VEFLEANETPRPLSLRTNTLKTRRRDLAGVLINRGVNLDPIGKWSKVGLVVYDSQVPVGA 257
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ GHY+LQ AS + AP ++ AALMKNTG+++AN++
Sbjct: 258 TPEYMAGHYMLQSASSFLPVMALAPQEKERIVDVAAAPGGKTTYIAALMKNTGLIYANEL 317
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R K++ N +R+GV NSVV DGR+ K
Sbjct: 318 KVQRLKSLTANIYRMGVTNSVVCNYDGRELPK 349
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
ENEAVV+YAL+KR VK+VP+GL+FG EGF+ +R+ K + P +
Sbjct: 425 ENEAVVDYALKKRHVKVVPSGLEFGKEGFIRFRE-KRFHPSL 465
>gi|342886300|gb|EGU86169.1| hypothetical protein FOXB_03305 [Fusarium oxysporum Fo5176]
Length = 679
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 105/153 (68%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 300 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSVPLGA 359
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + C AP AA+MKNTG++ AND
Sbjct: 360 TPEYLAGHYILQAASSFLPCMALDPQENERVLDMAAAPGGKTTYMAAMMKNTGIVVANDP 419
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
+K R+K ++GN HRLG N +V+ D R++ KP
Sbjct: 420 NKARAKGLIGNIHRLGTRNVIVSNYDAREFPKP 452
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +V+LV GL FG EGF +Y K + P M+
Sbjct: 524 EENEQVVQYALSRRPNVRLVDAGLAFGKEGFTSY-MGKKFDPSMR 567
>gi|190344542|gb|EDK36232.2| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
6260]
Length = 641
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLK+RRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 289 MEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVNLQPIGAWTKVGLQIFDSQVPIGA 348
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 349 TPEYLAGHYILQAASSFLPVMALQPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 408
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 409 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 440
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV T L G EGF +YR K++ P++
Sbjct: 513 DENEAVVDYALRKRPNVKLVDTELQIGKEGFTSYR-GKNFSPKL 555
>gi|412990472|emb|CCO19790.1| predicted protein [Bathycoccus prasinos]
Length = 713
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M LEA+ETQRP+T+RTNTLK RRRDLA L+NRGVNLDPIGKWSKVGL++Y+S VPIGA
Sbjct: 351 MELLEANETQRPVTLRTNTLKIRRRDLAAQLINRGVNLDPIGKWSKVGLLVYDSRVPIGA 410
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEY+ G Y+LQ AS + C AP AALM+NTG++FAN+
Sbjct: 411 TPEYMAGMYMLQSASSFLPCMALSPQEGERVLDVAAAPGGKTTYLAALMRNTGIIFANEF 470
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
K+R ++V N R+G NSVV DGRQ K
Sbjct: 471 QKKRLNSLVANLQRMGCTNSVVCNYDGRQLPK 502
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENE VV+Y L+KRDVK+V TGL+FG +GF +YR K++ P + E
Sbjct: 575 EENEQVVDYILKKRDVKIVSTGLEFGRKGFTSYR-GKTFHPSVSE 618
>gi|255718325|ref|XP_002555443.1| KLTH0G09460p [Lachancea thermotolerans]
gi|238936827|emb|CAR25006.1| KLTH0G09460p [Lachancea thermotolerans CBS 6340]
Length = 637
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTN+LKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 270 LEFFEANEVSRPVTIRTNSLKTRRRDLAQTLVNRGVNLKPIGPWTKVGLQIFDSQVPIGA 329
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 330 TPEYLAGHYILQAASSFLPVVALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 389
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 390 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 421
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV+YALRKR +VKLV GL G E FV+YR K + P ++
Sbjct: 494 EENEAVVDYALRKRPNVKLVDAGLAIGKEAFVSYR-GKKFHPSVK 537
>gi|146422021|ref|XP_001486953.1| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
6260]
Length = 641
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLK+RRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 289 MEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVNLQPIGAWTKVGLQIFDSQVPIGA 348
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 349 TPEYLAGHYILQAASSFLPVMALQPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 408
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 409 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 440
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV T L G EGF +YR K++ P++
Sbjct: 513 DENEAVVDYALRKRPNVKLVDTELQIGKEGFTSYR-GKNFSPKL 555
>gi|241958522|ref|XP_002421980.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
gi|223645325|emb|CAX39981.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
Length = 620
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQALVN+GVNL PIG W+KVGL I++S VPIGA
Sbjct: 265 MEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVNLQPIGSWTKVGLQIFDSQVPIGA 324
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 325 TPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 384
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 385 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 416
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV TGL G EGF +YR K + P++
Sbjct: 489 DENEAVVDYALRKRPNVKLVDTGLTIGKEGFTSYR-GKHFNPKI 531
>gi|256071291|ref|XP_002571974.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
gi|353229498|emb|CCD75669.1| putative nucleolar protein nol1/nop2 [Schistosoma mansoni]
Length = 434
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 108/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LEA+E RP+TIRTNTLKTRRR+LAQAL+NRGVNLDP+ WSKVGLV+Y+S VP+GA
Sbjct: 184 VEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNLDPLEPWSKVGLVVYSSQVPLGA 243
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS +C AP A LMKNTG +FAN++
Sbjct: 244 TPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQLMKNTGTIFANEI 303
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ R+KA++GN HR+GV N+V+ +GR++ K
Sbjct: 304 NPSRAKALLGNCHRMGVTNTVICTENGRKFPK 335
>gi|440634815|gb|ELR04734.1| hypothetical protein GMDG_06963 [Geomyces destructans 20631-21]
Length = 699
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTN+L+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 296 FAFFEANETARPVVIRTNSLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESAVPLGA 355
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTG +FAND
Sbjct: 356 TPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYIAALMKNTGCIFANDS 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K ++GN HRLGV N++V D R++ K
Sbjct: 416 NKARAKGLIGNIHRLGVKNTIVCNYDAREFPK 447
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE+VV YAL KR +V+LV TGL FG EGF Y K++ +M+
Sbjct: 520 EENESVVQYALSKRPNVRLVETGLTFGKEGFTAY-MGKNFDAKMK 563
>gi|256071289|ref|XP_002571973.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
gi|353229500|emb|CCD75671.1| putative nucleolar protein nol1/nop2 [Schistosoma mansoni]
Length = 490
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 109/156 (69%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LEA+E RP+TIRTNTLKTRRR+LAQAL+NRGVNLDP+ WSKVGLV+Y+S VP+GA
Sbjct: 195 VEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNLDPLEPWSKVGLVVYSSQVPLGA 254
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQGAS +C AP A LMKNTG +FAN++
Sbjct: 255 TPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQLMKNTGTIFANEI 314
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
+ R+KA++GN HR+GV N+V+ +GR++ K N
Sbjct: 315 NPSRAKALLGNCHRMGVTNTVICTENGRKFPKIMSN 350
>gi|68476951|ref|XP_717453.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
gi|68477142|ref|XP_717364.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
gi|46439073|gb|EAK98395.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
gi|46439166|gb|EAK98487.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
Length = 618
Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQALVN+GVNL PIG W+KVGL I++S VPIGA
Sbjct: 263 MEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVNLQPIGSWTKVGLQIFDSQVPIGA 322
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 323 TPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 382
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 383 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 414
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV TGL G EGF +YR K + P++
Sbjct: 487 DENEAVVDYALRKRPNVKLVDTGLTIGKEGFTSYR-GKHFNPKI 529
>gi|260944772|ref|XP_002616684.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
gi|238850333|gb|EEQ39797.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
Length = 599
Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/268 (41%), Positives = 135/268 (50%), Gaps = 89/268 (33%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 247 MEFFEANEVARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGAWTKVGLQIFDSQVPIGA 306
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 307 TPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDA 366
Query: 105 SKERSKA-------------------------IVGNFHRL---------GVINS------ 124
+K R+K+ ++G F R+ GVI
Sbjct: 367 NKARTKSLIANIQRLGCKNTIVCHYDAREFPKVIGGFDRVLLDAPCSGTGVIAKDESVKV 426
Query: 125 -----------------VVTCLDGRQYGKP--------------EENEAVVNYALRKR-D 152
+++ +D P +ENEAVV+YALRKR +
Sbjct: 427 SRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGVIVYSTCSIAVDENEAVVDYALRKRPN 486
Query: 153 VKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
VKLV TGL G EGF +YR K + P++
Sbjct: 487 VKLVETGLQIGKEGFTSYR-GKRFNPKI 513
>gi|256071287|ref|XP_002571972.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
gi|353229499|emb|CCD75670.1| putative nucleolar protein nol1/nop2 [Schistosoma mansoni]
Length = 479
Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 107/149 (71%), Gaps = 16/149 (10%)
Query: 4 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPE 63
LEA+E RP+TIRTNTLKTRRR+LAQAL+NRGVNLDP+ WSKVGLV+Y+S VP+GATPE
Sbjct: 187 LEANEVDRPVTIRTNTLKTRRRELAQALINRGVNLDPLEPWSKVGLVVYSSQVPLGATPE 246
Query: 64 YLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSKE 107
YL GHYILQGAS +C AP A LMKNTG +FAN+++
Sbjct: 247 YLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQLMKNTGTIFANEINPS 306
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R+KA++GN HR+GV N+V+ +GR++ K
Sbjct: 307 RAKALLGNCHRMGVTNTVICTENGRKFPK 335
>gi|116181006|ref|XP_001220352.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Chaetomium globosum CBS
148.51]
gi|88185428|gb|EAQ92896.1| hypothetical protein CHGG_01131 [Chaetomium globosum CBS 148.51]
Length = 722
Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 104/150 (69%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ STVP+GA
Sbjct: 296 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESTVPLGA 355
Query: 61 TPEYLGGHYILQGASKYW----IC------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + +C AP +ALMKNTGV+FAND
Sbjct: 356 TPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMSALMKNTGVVFANDP 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK R+K ++GN HRLG N +V D R++
Sbjct: 416 SKSRAKGLIGNIHRLGARNVIVCNYDAREF 445
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 138 EEN--EAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EEN E VV YAL +R +VKLV TGL FG EGF +Y K++ P ++
Sbjct: 520 EENFSEQVVAYALSRRPNVKLVETGLPFGKEGFTSY-MGKAFHPSLK 565
>gi|366995557|ref|XP_003677542.1| hypothetical protein NCAS_0G03030 [Naumovozyma castellii CBS 4309]
gi|342303411|emb|CCC71190.1| hypothetical protein NCAS_0G03030 [Naumovozyma castellii CBS 4309]
Length = 490
Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQALVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 131 LEFFEANEIARPITIRTNTLKTRRRDLAQALVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 190
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL G+YILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 191 TPEYLAGNYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 250
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 251 NKNRTKSLIANIHRLGCTNTIVCNYDAREFPK 282
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV TGL G EGF ++R K + P ++
Sbjct: 355 EEDEAVVDYALRKRPNVKLVDTGLAIGKEGFTSFR-GKKFHPSIK 398
>gi|448525808|ref|XP_003869206.1| Nop2 protein [Candida orthopsilosis Co 90-125]
gi|380353559|emb|CCG23070.1| Nop2 protein [Candida orthopsilosis]
Length = 626
Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 102/150 (68%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIRTNTLKTRRRDLAQ+LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 271 IEFFEANETARPITIRTNTLKTRRRDLAQSLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 330
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 331 TPEYLAGQYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 390
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+K+++ N HRLG N++V D R++
Sbjct: 391 NKARTKSLIANIHRLGCKNTIVCNYDAREF 420
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAVV+YALRKR +VKLV TGL G EGF +YR K + P++
Sbjct: 495 EENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYR-GKHFNPKL 537
>gi|393908574|gb|EFO18951.2| nucleolar protein [Loa loa]
Length = 726
Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+ IR+N+LKTRR +LA+ L+NRG+N+DP +W+KVGL++Y+S VP+GA
Sbjct: 303 LEFLEANEQPRPVIIRSNSLKTRRAELARNLINRGMNVDPAAEWTKVGLIVYDSQVPVGA 362
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQG S + +C AP + AALMKNTGVL+AND
Sbjct: 363 TPEYLAGHYMLQGLSSFLPVMALAPQPEETILDVCSAPGGKSSHIAALMKNTGVLYANDA 422
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R +A++GN HRLGV N+VV+ LDGR++ K
Sbjct: 423 NMQRCRAVIGNLHRLGVNNAVVSNLDGREFAK 454
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENEAVV+YALRKRD KLV GLD G +GF +R+
Sbjct: 528 EENEAVVDYALRKRDCKLVAMGLDIGVQGFTKFRE 562
>gi|238879878|gb|EEQ43516.1| nucleolar protein NOP2 [Candida albicans WO-1]
Length = 618
Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQALVN+GVNL PIG W+KVGL I++S VPIGA
Sbjct: 263 MEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVNLQPIGSWTKVGLQIFDSQVPIGA 322
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 323 TPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 382
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 383 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 414
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV TGL G EGF +YR K + P++
Sbjct: 487 DENEAVVDYALRKRPNVKLVDTGLTIGKEGFTSYR-GKHFNPKI 529
>gi|312086545|ref|XP_003145118.1| nucleolar protein [Loa loa]
Length = 692
Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+ IR+N+LKTRR +LA+ L+NRG+N+DP +W+KVGL++Y+S VP+GA
Sbjct: 269 LEFLEANEQPRPVIIRSNSLKTRRAELARNLINRGMNVDPAAEWTKVGLIVYDSQVPVGA 328
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQG S + +C AP + AALMKNTGVL+AND
Sbjct: 329 TPEYLAGHYMLQGLSSFLPVMALAPQPEETILDVCSAPGGKSSHIAALMKNTGVLYANDA 388
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R +A++GN HRLGV N+VV+ LDGR++ K
Sbjct: 389 NMQRCRAVIGNLHRLGVNNAVVSNLDGREFAK 420
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENEAVV+YALRKRD KLV GLD G +GF +R+
Sbjct: 494 EENEAVVDYALRKRDCKLVAMGLDIGVQGFTKFRE 528
>gi|354545845|emb|CCE42574.1| hypothetical protein CPAR2_202170 [Candida parapsilosis]
Length = 629
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIRTNTLKT+RRDLAQ+LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 274 IEFFEANETARPITIRTNTLKTKRRDLAQSLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 333
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 334 TPEYLAGQYILQAASSFLPVIALDPKENERILDMAAAPGGKTTYISALMKNTGCVFANDA 393
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 394 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 425
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAVV+YALRKR +VKLV TGL G EGF +YR + + P++
Sbjct: 498 EENEAVVDYALRKRPNVKLVETGLAIGKEGFTSYR-GRHFNPKL 540
>gi|255081408|ref|XP_002507926.1| predicted protein [Micromonas sp. RCC299]
gi|226523202|gb|ACO69184.1| predicted protein [Micromonas sp. RCC299]
Length = 592
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M LEA+ETQRP+T+RTNTLK RRR+LA +L+NRGVNLDPIGKWSKVGL++Y+S VPIGA
Sbjct: 189 MELLEANETQRPVTLRTNTLKCRRRELAASLINRGVNLDPIGKWSKVGLLVYDSRVPIGA 248
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQ AS + C AP AALM+NTG++FAN+
Sbjct: 249 TPEYMAGHYMLQSASSFLPCMALAPQDGERVLDVAAAPGGKTTYLAALMRNTGMIFANEF 308
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
K+R ++V N R+G N+ V DGRQ K
Sbjct: 309 QKKRLSSLVANLQRMGCTNATVCNYDGRQLPK 340
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENEAV++Y L+KRDVKLVPTGL+FG GF +YR K++ P + EK R P
Sbjct: 413 EENEAVLDYILKKRDVKLVPTGLEFGRPGFTSYR-GKNFHPSV-EKSRRFYP 462
>gi|46123731|ref|XP_386419.1| hypothetical protein FG06243.1 [Gibberella zeae PH-1]
Length = 678
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 105/153 (68%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 301 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSVPLGA 360
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + C AP +A+MKNTG++ AND
Sbjct: 361 TPEYLAGHYILQAASSFLPCMALDPQENERVLDMASAPGGKTTYMSAMMKNTGIVVANDP 420
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
+K R+K ++GN HRLG N +V+ D R++ KP
Sbjct: 421 NKARAKGLIGNIHRLGCRNVIVSNYDAREFPKP 453
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE VVNYAL +R +V+LV GL FG EGF +Y K + P +
Sbjct: 525 EENEQVVNYALSRRPNVRLVDAGLTFGKEGFTSY-MGKKFDPSV 567
>gi|50425343|ref|XP_461265.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
gi|49656934|emb|CAG89654.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
Length = 611
Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 257 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 316
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +A+MKNTG +FAND
Sbjct: 317 TPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 376
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 377 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 408
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE+VV+YALRKR +VKLV GL G EGF +YR K + P +
Sbjct: 481 EENESVVDYALRKRPNVKLVDAGLQIGKEGFTSYR-GKHFSPSI 523
>gi|170585061|ref|XP_001897306.1| NOL1/NOP2/sun family putative RNA methylase containing protein
[Brugia malayi]
gi|158595285|gb|EDP33851.1| NOL1/NOP2/sun family putative RNA methylase containing protein
[Brugia malayi]
Length = 739
Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+ IR+N+LKTRR +LA+ L+NRG+N+DP +W+K+GL++Y+S VP+GA
Sbjct: 312 LEFLEANEQPRPVIIRSNSLKTRRAELARNLINRGMNVDPAAEWTKIGLIVYDSQVPVGA 371
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQG S + +C AP + AALMKNTGVL+AND
Sbjct: 372 TPEYLAGHYMLQGLSSFLPVMALAPRPEETILDVCSAPGGKSSHIAALMKNTGVLYANDA 431
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R +A++GN HRLGV N+VV+ LDGR++ K
Sbjct: 432 NMQRCRAVIGNLHRLGVNNAVVSNLDGREFAK 463
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENEAVV+YALRKRD KLVP GLD G +GF +R+
Sbjct: 537 EENEAVVDYALRKRDCKLVPMGLDVGVQGFTKFRE 571
>gi|408399720|gb|EKJ78813.1| hypothetical protein FPSE_00956 [Fusarium pseudograminearum CS3096]
Length = 679
Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 105/153 (68%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 302 FAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSVPLGA 361
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + C AP +A+MKNTG++ AND
Sbjct: 362 TPEYLAGHYILQAASSFLPCMALDPQENERVLDMASAPGGKTTYMSAMMKNTGIVVANDP 421
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
+K R+K ++GN HRLG N +V+ D R++ KP
Sbjct: 422 NKARAKGLIGNIHRLGCRNVIVSNYDAREFPKP 454
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE VVNYAL +R +V+LV GL FG EGF +Y K + P +
Sbjct: 526 EENEQVVNYALSRRPNVRLVDAGLTFGKEGFTSY-MGKKFDPSV 568
>gi|291000320|ref|XP_002682727.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi]
gi|284096355|gb|EFC49983.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi]
Length = 702
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 104/148 (70%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RPLTIR+N LKTRRR+LAQ L+NRG+NLDP+ KWSK GL IY++ VP+GA
Sbjct: 301 IEFLEANEKPRPLTIRSNILKTRRRELAQNLINRGINLDPLDKWSKAGLKIYDANVPVGA 360
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEYL GHY+LQGAS + AP K+ +ALMKNTGV+FANDV
Sbjct: 361 TPEYLAGHYMLQGASSFLPVMALAPKENEKVIDMAAAPGGKTTYLSALMKNTGVIFANDV 420
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
+ +R+KA++ N HR+G N +V DGR
Sbjct: 421 NVDRTKALIANIHRMGCRNCIVANYDGR 448
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFV 168
+ENEAVVNYAL+KR VK+VPTGL FGT GF+
Sbjct: 526 DENEAVVNYALKKRHVKIVPTGLQFGTPGFI 556
>gi|145344001|ref|XP_001416528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576754|gb|ABO94821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 485
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M LEA+E QRP+TIRTNTLK RRR+LA++L+NRGVNLDP+GKWSKVGL++Y+S VPIGA
Sbjct: 186 MELLEANEQQRPVTIRTNTLKVRRRELAESLINRGVNLDPVGKWSKVGLLVYDSRVPIGA 245
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHYILQ AS + C AP AALM+NTG++FAN+
Sbjct: 246 TPEYMAGHYILQSASSFLPCMALAPQEGERVLDMAAAPGGKTTYLAALMRNTGMIFANEY 305
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
K+R ++V N RLG NS V DGR K
Sbjct: 306 QKKRLNSLVANLQRLGCTNSTVCNYDGRALPK 337
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV+Y LRKRDVK+V +GL+FG +GF +YR K++ P ++
Sbjct: 410 EENEAVVDYILRKRDVKIVSSGLEFGRKGFTSYR-GKNFHPSVE 452
>gi|254569392|ref|XP_002491806.1| Probable RNA m(5)C methyltransferase [Komagataella pastoris GS115]
gi|238031603|emb|CAY69526.1| Probable RNA m(5)C methyltransferase [Komagataella pastoris GS115]
gi|328351694|emb|CCA38093.1| Putative ribosomal RNA methyltransferase Nop2 [Komagataella
pastoris CBS 7435]
Length = 608
Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+T+RTNTLK RRRDLAQ LVN+GVNL PIGKW+KVGL I++S VPIGA
Sbjct: 251 IEFFEANEIARPVTVRTNTLKARRRDLAQKLVNKGVNLQPIGKWTKVGLQIFDSQVPIGA 310
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +A+MKNTG +FAND
Sbjct: 311 TPEYLAGHYILQAASSFLPVMALDPQENERILDMAAAPGGKTTFISAMMKNTGCVFANDS 370
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N+VV+ D R++ K
Sbjct: 371 NKARTKSLIANIHRLGCRNTVVSNYDAREFPK 402
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAVVNYAL+KR +V+LV TGL G GF +YR K Y P +
Sbjct: 475 EENEAVVNYALKKRPNVRLVDTGLTIGKPGFTSYRGMK-YHPSV 517
>gi|410083445|ref|XP_003959300.1| hypothetical protein KAFR_0J00970 [Kazachstania africana CBS 2517]
gi|372465891|emb|CCF60165.1| hypothetical protein KAFR_0J00970 [Kazachstania africana CBS 2517]
Length = 610
Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 254 VEFFEANEVARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGNWTKVGLQIFDSQVPIGA 313
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 314 TPEYLAGQYILQAASSFLPVIALDPQENERILDMASAPGGKTTYISALMKNTGCVFANDA 373
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 374 NKNRTKSLIANIHRLGCTNTIVCNYDAREFPK 405
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV T L G EGF ++R K + P ++
Sbjct: 478 EEDEAVVDYALRKRPNVKLVETNLAIGKEGFTSFR-GKKFHPSLK 521
>gi|50291427|ref|XP_448146.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527457|emb|CAG61097.1| unnamed protein product [Candida glabrata]
Length = 619
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKT RRDLAQALVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 262 LEFFEANEIARPITIRTNTLKTSRRDLAQALVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 321
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+YILQ AS + AP +ALMKNTG +FAND
Sbjct: 322 TPEYLAGNYILQAASSFLPVVALDPQENERVLDMASAPGGKTTYISALMKNTGCVFANDA 381
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R+K+++ N HRLG N++V D R++ K
Sbjct: 382 NKKRTKSLIANIHRLGCTNTIVCNYDAREFPK 413
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV TGL G EGFV++R K + P ++
Sbjct: 486 EEDEAVVDYALRKRPNVKLVDTGLQIGKEGFVSFR-GKKFHPSLK 529
>gi|353237259|emb|CCA69236.1| probable NOP2-nucleolar protein [Piriformospora indica DSM 11827]
Length = 683
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RP+TIRTNTL+ RRRDLAQAL+NRGVNL+PIGKWSK GL ++ S+VPIGA
Sbjct: 323 IEFFEANETPRPVTIRTNTLRCRRRDLAQALINRGVNLEPIGKWSKEGLQVFESSVPIGA 382
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +ALM+NTG++FAND
Sbjct: 383 TPEYLAGHYMLQSASSFLPVLALDPKPNERVLDMASAPGGKTTYISALMQNTGLVFANDA 442
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N +V DGR++ K
Sbjct: 443 TKARTKSLSANVHRLGCKNVIVCNYDGREFPK 474
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 137 PEENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
PEE+EAVV YALRKR VKLVPTGL+FG EGF N+R
Sbjct: 544 PEEDEAVVAYALRKRPHVKLVPTGLEFGKEGFTNFR 579
>gi|313225604|emb|CBY07078.1| unnamed protein product [Oikopleura dioica]
Length = 700
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 106/151 (70%), Gaps = 18/151 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F EA+E RP+TIRTNTLK RRR+LAQAL+NRGVNLDP+GKWSKVGLVIY+S VPIGA
Sbjct: 209 VAFFEANEVHRPVTIRTNTLKCRRRELAQALINRGVNLDPVGKWSKVGLVIYDSAVPIGA 268
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP K + AA LMKNTG++ AND
Sbjct: 269 TPEYLAGHYMLQSASSFLPVMALAPQEGEKVLDMCAAPGGKTTYISQLMKNTGMVLANDK 328
Query: 105 SKERSKAIVGNFHRLGVINSVVTC-LDGRQY 134
+K R KA+V N HRLG N V TC DGR +
Sbjct: 329 NKLRMKALVANSHRLGCSN-VATCNYDGRSF 358
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE VV+Y L+ R+VKLV TGL+ G EGF YR + + P M
Sbjct: 433 EENEWVVDYGLKNRNVKLVETGLELGEEGFTKYRSWR-FHPSM 474
>gi|409045898|gb|EKM55378.1| hypothetical protein PHACADRAFT_255965 [Phanerochaete carnosa
HHB-10118-sp]
Length = 704
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+ RRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 352 IEFFEANEVPRPVTIRTNTLRARRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 411
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AALM+NTGV+FAN++
Sbjct: 412 TPEYLAGHYMLQAASSFLPVIALGPQPGERVLDMASAPGGKTTHMAALMQNTGVIFANEL 471
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 472 NKARTKSLTANVHRLGCKNVVVCSYDGREFPK 503
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 2/42 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRP 178
+ENEAVV+YALRKR +VKLV TGL+FG GF +YR K++ P
Sbjct: 576 DENEAVVDYALRKRPNVKLVETGLEFGVPGFKSYR-GKTFDP 616
>gi|149239082|ref|XP_001525417.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450910|gb|EDK45166.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
Length = 637
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQ+LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 276 IEFFEANEIARPITIRTNTLKTRRRDLAQSLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 335
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +A+MKNTG +FAND
Sbjct: 336 TPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISAMMKNTGCIFANDA 395
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 396 NKARTKSLIANIHRLGCRNTIVCNYDAREFPK 427
>gi|302767744|ref|XP_002967292.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii]
gi|300165283|gb|EFJ31891.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii]
Length = 505
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 108/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+ET RP+++RTNTLKTRRRDLA L+NRGVNLDPIGKWSKVGLV+Y+S VP+GA
Sbjct: 210 VEFLEANETPRPVSLRTNTLKTRRRDLAGVLINRGVNLDPIGKWSKVGLVVYDSQVPVGA 269
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ GHY+LQ AS + AP ++ AALMKNTG+++AN++
Sbjct: 270 TPEYMAGHYMLQSASSFLPVMALAPQEKERIVDVAAAPGGKTTYIAALMKNTGLIYANEL 329
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R K++ N +R+GV NSVV DGR+ K
Sbjct: 330 KVQRLKSLTANIYRMGVTNSVVCNYDGRELPK 361
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Query: 140 NEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
NEAVV+YAL+KR VK+VPTGL+FG EGF+ +R+ K + P +
Sbjct: 435 NEAVVDYALKKRHVKVVPTGLEFGKEGFIRFRE-KRFHPSL 474
>gi|361128689|gb|EHL00619.1| putative ribosomal RNA methyltransferase Nop2 [Glarea lozoyensis
74030]
Length = 727
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLA +L+NRGV L+P+GKWSK+GL ++ S VP+GA
Sbjct: 288 FAFFEANETARPVVIRTNTLRTHRRDLATSLINRGVTLEPVGKWSKIGLQVFESAVPLGA 347
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTGV+FAND
Sbjct: 348 TPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHLAALMKNTGVIFANDS 407
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K ++GN HRLG N++V D R++ K
Sbjct: 408 NKSRAKGLIGNIHRLGAKNTIVCNYDAREFPK 439
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNY 170
EENE VV YAL KR +VKLV TGL FG EGF +Y
Sbjct: 512 EENEQVVQYALSKRPNVKLVETGLVFGKEGFTSY 545
>gi|440803888|gb|ELR24771.1| NOL1/NOP2/sun family putative RNA methylase subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 689
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 102/150 (68%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RPLTIRTNTLKTRRR+LAQ+L+ RGVNLDP+ KWS VGL IY+S VPIGA
Sbjct: 306 MEFFEANEAPRPLTIRTNTLKTRRRELAQSLIQRGVNLDPLSKWSNVGLQIYDSPVPIGA 365
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + +C AP A +MKNTGVLF+ND
Sbjct: 366 TPEYLTGQYMLQSASSFIPVLALDPQPGERVLDMCAAPGGKTTYIAQMMKNTGVLFSNDK 425
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
ER +A+V N HR+G+ N+V+T DGR +
Sbjct: 426 HSERVRAVVANVHRMGIRNTVITNYDGRMF 455
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 142 AVVNYALRKRDVKLVPTGLDFGTEGF 167
AVV+YAL+KR VK+VP+G+ FG GF
Sbjct: 547 AVVDYALKKRAVKVVPSGVPFGKPGF 572
>gi|30696661|ref|NP_850927.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
gi|9758212|dbj|BAB08657.1| nucleolar protein-like [Arabidopsis thaliana]
gi|332009316|gb|AED96699.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
Length = 682
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E QRP +IRTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLVIY+S VPIGA
Sbjct: 273 MELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVIYDSQVPIGA 332
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+Y+LQGAS + AP AALMKNTG+++AN++
Sbjct: 333 TPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEM 392
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N++V DGR+ K
Sbjct: 393 KVPRLKSLTANLHRMGVTNTIVCNYDGRELPK 424
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KRDVKLV GLDFG +GF +R+++ ++P + +K R P
Sbjct: 500 ENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHR-FQPSL-DKTRRFYP 548
>gi|156063948|ref|XP_001597896.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Sclerotinia sclerotiorum 1980
UF-70]
gi|154697426|gb|EDN97164.1| hypothetical protein SS1G_02092 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 713
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 297 FAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVVLEPVGKWSKVGLQIFESAVPLGA 356
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTG +FAND
Sbjct: 357 TPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTHIAALMKNTGCIFANDS 416
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K ++GN HRLG N +V D R++ K
Sbjct: 417 NKSRAKGLIGNIHRLGAKNVIVCNYDAREFPK 448
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV Y L KR +VKLV TGL FG EGF +Y KS+ M+
Sbjct: 521 EENEQVVQYVLNKRPNVKLVETGLAFGKEGFTSY-MGKSFDKNMK 564
>gi|406863282|gb|EKD16330.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1016
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSK+GL I+ S VP+GA
Sbjct: 290 FAFFEANETHRPVVIRTNTLRTHRRDLAQALINRGVVLEPVGKWSKIGLQIFESAVPLGA 349
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTG +FAND
Sbjct: 350 TPEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHIAALMKNTGCIFANDS 409
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K ++GN HRLG N++V D R++ K
Sbjct: 410 NKSRAKGLIGNIHRLGAKNTIVCNYDAREFPK 441
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNY 170
EENE VV YAL +R +VKLV TGL FG EGF Y
Sbjct: 514 EENEGVVQYALSRRPNVKLVETGLVFGKEGFTAY 547
>gi|429862273|gb|ELA36929.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 727
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 103/153 (67%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ +RTNTL+T RRDLAQAL+ RGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 289 FAFFEANESARPVVLRTNTLRTHRRDLAQALIGRGVTLEPVGKWSKVGLQVFESNVPLGA 348
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AA+MKNTGV+ AND
Sbjct: 349 TPEYLAGHYILQAASSFLPVMALEPQENERCLDMAAAPGGKTTHMAAMMKNTGVIVANDP 408
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
SK+R+K ++GN HRLG N VV+ D R++ KP
Sbjct: 409 SKQRAKGLIGNIHRLGARNVVVSNYDAREFPKP 441
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV YAL +R +VKLV T L FG EGF ++ K + P ++
Sbjct: 513 EENEAVVQYALSRRPNVKLVDTNLPFGREGFTSF-MGKKFDPSLK 556
>gi|222423014|dbj|BAH19490.1| AT5G55920 [Arabidopsis thaliana]
Length = 625
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E QRP +IRTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLVIY+S VPIGA
Sbjct: 273 MELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVIYDSQVPIGA 332
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+Y+LQGAS + AP AALMKNTG+++AN++
Sbjct: 333 TPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEM 392
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N++V DGR+ K
Sbjct: 393 KVPRLKSLTANLHRMGVTNTIVCNYDGRELPK 424
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KRDVKLV GLDFG +GF +R+++ ++P + +K R P
Sbjct: 500 ENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHR-FQPSL-DKTRRFYP 548
>gi|310794553|gb|EFQ30014.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001]
Length = 741
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 104/153 (67%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL++RGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 291 FAFFEANESARPVVIRTNTLRTHRRDLAQALISRGVTLEPVGKWSKVGLQIFESNVPLGA 350
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+YILQ AS + AP AA+MKNTGV+ AND
Sbjct: 351 TPEYLAGYYILQAASSFLPVMALEPQENERVLDMAAAPGGKTTHMAAMMKNTGVIVANDP 410
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
SK+R+K ++GN HRLG N VV+ D R++ KP
Sbjct: 411 SKQRAKGLIGNIHRLGARNVVVSNYDAREFPKP 443
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV YAL +R +V+LV T L FG EGF +Y K + P ++
Sbjct: 515 EENEAVVQYALSRRPNVRLVDTNLPFGREGFTSY-MGKKFDPSLK 558
>gi|443926035|gb|ELU44783.1| nucleolar RNA m(5)C methyltransferase [Rhizoctonia solani AG-1 IA]
Length = 915
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+ RRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 540 IEFFEANEVPRPVTIRTNTLRARRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 599
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AALM+NTG++FAND
Sbjct: 600 TPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTHMAALMQNTGLIFANDA 659
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 660 NKARTKSLSANVHRLGCKNVVVCSYDGREFPK 691
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNK 174
+ENE+VV+YALRKR +VKLV TGL+FG GF +R K
Sbjct: 762 DENESVVDYALRKRPNVKLVDTGLEFGVPGFTKFRGKK 799
>gi|154303546|ref|XP_001552180.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Botryotinia fuckeliana
B05.10]
gi|347840919|emb|CCD55491.1| hypothetical protein [Botryotinia fuckeliana]
Length = 718
Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 100/149 (67%), Gaps = 16/149 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL I+ S VP+GAT
Sbjct: 297 AFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVVLEPVGKWSKVGLQIFESAVPLGAT 356
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL GHYILQ AS + AP AALMKNTG +FAND +
Sbjct: 357 PEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTHIAALMKNTGCIFANDSN 416
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQY 134
K R+K ++GN HRLG N +V D R++
Sbjct: 417 KSRAKGLIGNIHRLGAKNVIVCNYDAREF 445
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV Y L KR +VKLV TGL FG EGF +Y KS+ M+
Sbjct: 520 EENEQVVQYVLNKRPNVKLVETGLAFGKEGFTSY-MGKSFDKNMK 563
>gi|297796467|ref|XP_002866118.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp.
lyrata]
gi|297311953|gb|EFH42377.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp.
lyrata]
Length = 674
Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E QRP +IRTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLVIY+S VPIGA
Sbjct: 264 MELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVIYDSQVPIGA 323
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+Y+LQGAS + AP AALMKNTG+++AN++
Sbjct: 324 TPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEM 383
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N++V DGR+ K
Sbjct: 384 KVPRLKSLTANLHRMGVTNTIVCNYDGRELPK 415
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KRDVKLV GLDFG +GF +R+++ ++P + +K R P
Sbjct: 491 ENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHR-FQPSL-DKTRRFYP 539
>gi|320586046|gb|EFW98725.1| nucleolar RNA methyltransferase [Grosmannia clavigera kw1407]
Length = 722
Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 100/150 (66%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ +RTNTLKT RR+LAQAL+NRGV L+P+G+WSKVGL ++ S VP+GA
Sbjct: 282 FAFFEANETPRPVVLRTNTLKTHRRELAQALINRGVTLEPVGRWSKVGLQVFESNVPLGA 341
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTGV+FAND
Sbjct: 342 TPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHMAALMKNTGVVFANDP 401
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
SK RSK ++GN HRLG N +V D R +
Sbjct: 402 SKARSKGLIGNIHRLGARNVIVCNYDARDF 431
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV YAL++R +V+LV TGL FG EGF + K++ P ++
Sbjct: 506 EENEAVVAYALKRRPNVRLVETGLPFGKEGFTSI-MGKTFDPTLK 549
>gi|407922983|gb|EKG16073.1| Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Macrophomina
phaseolina MS6]
Length = 786
Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL I+ S VPIGA
Sbjct: 330 FAFFEANETPRPVVIRTNTLRTHRRQLAQALINRGVTLEPVGKWSKVGLQIFESQVPIGA 389
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTG +FAND
Sbjct: 390 TPEYLAGHYILQAASSFLPVMALAPQENERILDMASAPGGKTTHIAALMKNTGCIFANDA 449
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K+R+K ++GN HRLGV N++V D ++
Sbjct: 450 NKDRAKGLIGNIHRLGVKNTIVCNYDAMEF 479
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
+ENE VV YAL KR +VKLV TGL FG EGF ++ Q + + ++E
Sbjct: 554 DENERVVQYALEKRPNVKLVSTGLTFGKEGFTSF-QGRQFHHSLKE 598
>gi|392595710|gb|EIW85033.1| NOL1/NOP2/sun family RNA met [Coniophora puteana RWD-64-598 SS2]
Length = 410
Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKTRRRDLAQ L+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 56 IEFFEANEVARPVTIRTNTLKTRRRDLAQVLINRGVNLEPIGKWTNVGLQVFESSVPIGA 115
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AAL++NTGV+FAND
Sbjct: 116 TPEYLAGHYMLQAASSFLPVVALAPQPEERVLDMASAPGGKTTHIAALLQNTGVVFANDA 175
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N V DGR++ K
Sbjct: 176 NKARTKSLTANVHRLGCKNVTVCSYDGREFPK 207
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV TG+ FG EGF +R K + P +
Sbjct: 280 DENEAVVDYALRKRPNVKLVDTGIGFGREGFTKFR-GKVFHPSV 322
>gi|320581196|gb|EFW95417.1| RNA m(5)C methyltransferase, putative [Ogataea parapolymorpha DL-1]
Length = 608
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL TRRR+LAQ LVN+GVNL PIG W+KVGL +++S VPIGA
Sbjct: 246 IEFFEANEIHRPVTIRTNTLVTRRRELAQTLVNKGVNLQPIGPWTKVGLQVFDSQVPIGA 305
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 306 TPEYLAGHYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 365
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N+VV D R++ K
Sbjct: 366 NKARTKSLIANIHRLGCTNTVVCNYDAREFPK 397
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAVV+YALRKR +VKLV TGL G GF +YR K + P++
Sbjct: 470 EENEAVVDYALRKRPNVKLVETGLAIGKPGFTSYR-GKQFNPKV 512
>gi|281203041|gb|EFA77242.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
Length = 403
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/150 (58%), Positives = 107/150 (71%), Gaps = 17/150 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+ETQRPLTIRTNTLKT+R+DLA L RGV+L+PI KWS+VGL IY+S V IGA
Sbjct: 25 LEFLEANETQRPLTIRTNTLKTKRKDLADVLSTRGVHLEPI-KWSQVGLTIYDSQVAIGA 83
Query: 61 TPEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI Q AS + +CA P A+LMKNTGVL AND+
Sbjct: 84 TPEYLAGHYIQQSASSFLPVLALEPQPGERVLDMCASPGGKTTYIASLMKNTGVLVANDI 143
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+KER +++V N HRLGV N+VV+ LDGR+Y
Sbjct: 144 NKERMRSLVANIHRLGVRNTVVSNLDGREY 173
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAVV+YAL+KR V+LV T ++FG +GF NYR+ + + P +
Sbjct: 248 EENEAVVDYALKKRHVQLVDTSIEFGVQGFTNYREQR-FNPNL 289
>gi|146185731|ref|XP_001032410.2| NOL1/NOP2/sun family putative RNA methylase containing protein
[Tetrahymena thermophila]
gi|146143105|gb|EAR84747.2| NOL1/NOP2/sun family putative RNA methylase containing protein
[Tetrahymena thermophila SB210]
Length = 759
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F E++E QRPLTIRTNTLKTRR++LAQ L+ RGVNLD + +W+KVGL IY+S VPIGA
Sbjct: 188 VQFFESNEQQRPLTIRTNTLKTRRKELAQILIQRGVNLDSLAEWTKVGLKIYDSKVPIGA 247
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP A LMKNTGVLFANDV
Sbjct: 248 TPEYLAGHYMLQSASSFLPVIALAPQPNEKILDMAAAPGGKTTYIAQLMKNTGVLFANDV 307
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R+KA++ N R+G+ N +VT DGR+ K
Sbjct: 308 KADRNKALIFNVQRMGINNCIVTNYDGRKLNK 339
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
+ENE+VV+YAL+ R VKLV G++ G EG+ Y Q+K + P+++ K R+ P
Sbjct: 408 QENESVVDYALKNRFVKLVDMGIEVGEEGYTKY-QDKRFDPQLK-KTRRILP 457
>gi|209881801|ref|XP_002142338.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
gi|209557944|gb|EEA07989.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
Length = 539
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F +A+E QRPLTIRTN LKTRRRDLA L++RG N+DPIG+W+KVGL++Y+S+VPIGA
Sbjct: 141 IEFFDANENQRPLTIRTNMLKTRRRDLAHKLISRGANVDPIGEWTKVGLIVYSSSVPIGA 200
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDV 104
TPEYL G+Y++Q AS AP K +AAA LMKN+G+L+AND+
Sbjct: 201 TPEYLSGYYMIQSASSLIPVMALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDL 260
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
++R A++ N HR+G+ NSVV +DG++ GK
Sbjct: 261 RRDRCTALIANLHRMGICNSVVINMDGKELGK 292
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENEAVV+Y L+ R+VKLVP G++ G+ G +R+N+ P + + R+ P
Sbjct: 365 EENEAVVDYILKVRNVKLVPLGIEIGSPGLSKFRENR-LNPTISKYSRRIYP 415
>gi|328874823|gb|EGG23188.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
Length = 713
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 106/152 (69%), Gaps = 17/152 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+ETQRPLTIRTNTLK RR+DLA AL RGV+L+PI KWS VGL IY++ V IGA
Sbjct: 308 LEFLEANETQRPLTIRTNTLKARRKDLADALGGRGVHLEPI-KWSPVGLTIYDTQVAIGA 366
Query: 61 TPEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI Q AS + +CA P AALMKNTG L AND+
Sbjct: 367 TPEYLAGHYIQQSASSFLPVVALEPQPGERILDLCASPGGKTTYVAALMKNTGTLVANDI 426
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
++ER +++V N HRLGV N++V+ LDGR+Y K
Sbjct: 427 NEERMRSLVANIHRLGVKNTIVSNLDGREYPK 458
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE VV+YALR RDV L+ TG++FG +GF YR ++
Sbjct: 531 EENEGVVDYALRNRDVILLDTGVEFGVQGFTAYRHHR 567
>gi|384252054|gb|EIE25531.1| NOL1/NOP2/sun family putative RNA met [Coccomyxa subellipsoidea
C-169]
Length = 461
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +EA+E +RP+T+RTNTLKTRRR+LA AL+NRGVNLDPIGKWSKVGLV+Y S VP+GA
Sbjct: 95 LELVEANEGRRPITLRTNTLKTRRRELAAALINRGVNLDPIGKWSKVGLVVYESNVPVGA 154
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQGAS + AP AALM+N+G++FAN+V
Sbjct: 155 TPEYMAGHYMLQGASSFLPVMALAPQEGEQVLDMAAAPGGKTTYIAALMRNSGIVFANEV 214
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ R K+I GN R+GV N++V+ DGR K
Sbjct: 215 NPLRLKSIQGNLQRMGVTNTIVSNYDGRDLPK 246
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQ 184
EENE VVNY LRKR VK+VPTGLDFG G++ YR+ + + P + E +
Sbjct: 321 EENENVVNYVLRKRHVKVVPTGLDFGRPGYMRYREFR-FHPSLAESR 366
>gi|380494596|emb|CCF33035.1| tRNA (Cytosine-5-)-methyltransferase NCL1, partial [Colletotrichum
higginsianum]
Length = 469
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 104/153 (67%), Gaps = 16/153 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RRDLAQAL++RGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 293 FAFFEANESARPVVIRTNTLRTHRRDLAQALISRGVTLEPVGKWSKVGLQIFESNVPLGA 352
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+YILQ AS + AP AA+MKNTGV+ AND
Sbjct: 353 TPEYLAGYYILQAASSFLPVMALEPQENERVLDMAAAPGGKTTHMAAMMKNTGVIVANDP 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
SK+R+K ++GN HRLG N VV+ D R++ KP
Sbjct: 413 SKQRAKGLIGNIHRLGARNVVVSNYDAREFPKP 445
>gi|358058763|dbj|GAA95726.1| hypothetical protein E5Q_02383 [Mixia osmundae IAM 14324]
Length = 762
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++FL+AS+T RP+TIR NTLKTRRR+LAQ+L+NRGVNL+PIGKW+KVGL ++ S VPIGA
Sbjct: 411 ITFLDASDTPRPITIRANTLKTRRRELAQSLINRGVNLEPIGKWTKVGLQVFESPVPIGA 470
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AA+++NTGV+FAND
Sbjct: 471 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMSAAPGGKTTFLAAMLQNTGVVFANDS 530
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ GN R+G N ++ DGR++ K
Sbjct: 531 NKHRTKSLAGNVARMGCKNVIICNHDGREFPK 562
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENE+VV+YALRKR VKLV TGL+FG EG +++
Sbjct: 635 DENESVVDYALRKRAHVKLVETGLEFGKEGHTSFK 669
>gi|340502431|gb|EGR29121.1| nucleolar protein 1, putative [Ichthyophthirius multifiliis]
Length = 479
Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 145/272 (53%), Gaps = 85/272 (31%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLE++ETQRP+TIRTNTLKTRR++LAQ L RGVNLD + +W+KVGL IY+S VPIGA
Sbjct: 180 VQFLESNETQRPVTIRTNTLKTRRKELAQILAQRGVNLDSLAEWTKVGLKIYDSKVPIGA 239
Query: 61 TPEYLGGHYILQGASKYW---ICAPHRAAKL-------------AAALMKNTGVLFANDV 104
TPEYL G+Y+LQ AS + AP + K+ A LMKNTG+LFAND+
Sbjct: 240 TPEYLAGYYMLQSASSFIPVIALAPQQNEKILDMSAAPGGKTTYVAQLMKNTGILFANDI 299
Query: 105 SKERSKAIV-------------------------GNFHR---------LGVINS------ 124
ER+KA++ NF R LG+I+
Sbjct: 300 KSERNKALIYNVQRMGITNCVVTNYDGRKLPKCINNFDRVLLDAPCTGLGIISRDQSIKA 359
Query: 125 -----------------VVTCLDGRQYG----------KPEENEAVVNYALRKRDVKLVP 157
+++ +D + G +ENE+V++YAL+ R VKLV
Sbjct: 360 TKQLIDVYKHSHLQRELILSAIDCCKKGGYIVYSTCSVSVQENESVIDYALKNRFVKLVD 419
Query: 158 TGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
TG+D G EG++ Y Q+K + P ++ K R+ P
Sbjct: 420 TGVDVGEEGYIKY-QDKRFDPSIK-KCRRILP 449
>gi|403166005|ref|XP_003889974.1| hypothetical protein PGTG_21386 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166030|gb|EHS63044.1| hypothetical protein PGTG_21386 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 715
Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F EA+ET RP+TIRTNTL+T RRDLAQ+L+NRGVNL+PIGKWSKVGL ++ S+VPIGA
Sbjct: 294 LAFFEANETARPVTIRTNTLRTNRRDLAQSLINRGVNLEPIGKWSKVGLQVFESSVPIGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +A+MKNTG LFAND
Sbjct: 354 TPEYLAGHYMLQAASSFLPVIALDPQPGEKCLDMSAAPGGKTTFMSAMMKNTGKLFANDS 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
SK R K+++ N R+G N +++ D R + K
Sbjct: 414 SKARCKSLMANVSRMGCHNVIISNHDARDFPK 445
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE+VV+YAL+KR +VKLV TG+ FG EGFV +R K + P ++
Sbjct: 518 EENESVVDYALKKRPNVKLVETGIGFGKEGFVRFR-GKIFNPSLK 561
>gi|388583315|gb|EIM23617.1| NOL1/NOP2/sun family putative RNA met [Wallemia sebi CBS 633.66]
Length = 465
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F +A+ET RP+TIR NTLKTRRRDLAQAL+NRGV+L+PIGKW+KVGL I++S VP+GA
Sbjct: 81 VAFFDANETPRPVTIRANTLKTRRRDLAQALINRGVSLEPIGKWTKVGLQIFDSNVPVGA 140
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ S + AP +ALM+NTGV+FAND
Sbjct: 141 TPEYLAGHYMLQSPSSFLPVMALDPQPNERVLDMASAPGGKTSYMSALMQNTGVVFANDA 200
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ R+K++ N HRLG N VV DGRQ+ K
Sbjct: 201 NAARTKSLSANVHRLGCKNVVVCTHDGRQFPK 232
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVN 169
+E+E VV+YAL+KR +VKLV TGL+FG EGF N
Sbjct: 305 DEDEGVVDYALKKRPNVKLVDTGLEFGVEGFTN 337
>gi|221484442|gb|EEE22738.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221505587|gb|EEE31232.1| ribosomal RNA small subunit methyltransferase B, putative
[Toxoplasma gondii VEG]
Length = 804
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 103/147 (70%), Gaps = 16/147 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+E RP+T+RTN+LKTRRRDLA AL+ RG N+DP+G+W+KVGL +Y STVP+GAT
Sbjct: 302 AFFEANEENRPMTLRTNSLKTRRRDLAAALIARGCNVDPLGEWTKVGLKVYESTVPVGAT 361
Query: 62 PEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDVS 105
PEYL GHY+LQ A+ AP K +AAA L+KN G+LFAND
Sbjct: 362 PEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPGGKTTYIAQLLKNEGILFANDAK 421
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGR 132
KER +++ N HRLGV N +V+C+DGR
Sbjct: 422 KERCTSLMANLHRLGVTNCIVSCVDGR 448
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
EENE VV+Y L R+VKLVP G+D G G +R
Sbjct: 525 EENEQVVDYILTARNVKLVPLGVDIGVPGLSGFR 558
>gi|344228747|gb|EGV60633.1| NOL1/NOP2/sun family putative RNA met [Candida tenuis ATCC 10573]
Length = 357
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRR+LAQ LVNRGVNL PIG W+KVGL +++S VPIGA
Sbjct: 1 MEFFEANEIARPITIRTNTLKTRRRELAQTLVNRGVNLQPIGTWTKVGLQVFDSQVPIGA 60
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 61 TPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 120
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 121 NKARTKSLIANIHRLGCKNTIVCNYDAREFPK 152
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
EENEAVV+YALRKR +VKLV T L G GFV+YR
Sbjct: 225 EENEAVVDYALRKRPNVKLVETHLQVGKPGFVSYR 259
>gi|169626371|ref|XP_001806586.1| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
gi|160705823|gb|EAT76170.2| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
Length = 725
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 99/142 (69%), Gaps = 16/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR+LAQ+L+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 286 FAFFEANETPRPIVIRTNTLRTHRRELAQSLINRGVQLEPVGKWSKVGLQIFESQVPLGA 345
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALMKNTG +FAND
Sbjct: 346 TPEYLAGHYILQAASSFLPVMALAPQEHERVLDMTAAPGGKTTHIAALMKNTGCIFANDA 405
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
+K+R+K ++GN HRLGV NSVV
Sbjct: 406 NKDRAKGLIGNIHRLGVRNSVV 427
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRP 178
EENE V+ YAL KR +VKLV TGL FG EGF N Y P
Sbjct: 510 EENEQVIQYALNKRPNVKLVETGLTFGKEGFTNIAGKVRYYP 551
>gi|237837991|ref|XP_002368293.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
ME49]
gi|211965957|gb|EEB01153.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
ME49]
Length = 804
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 103/147 (70%), Gaps = 16/147 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+E RP+T+RTN+LKTRRRDLA AL+ RG N+DP+G+W+KVGL +Y STVP+GAT
Sbjct: 302 AFFEANEENRPMTLRTNSLKTRRRDLAAALIARGCNVDPLGEWTKVGLKVYESTVPVGAT 361
Query: 62 PEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDVS 105
PEYL GHY+LQ A+ AP K +AAA L+KN G+LFAND
Sbjct: 362 PEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPGGKTTYIAQLLKNEGILFANDAK 421
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGR 132
KER +++ N HRLGV N +V+C+DGR
Sbjct: 422 KERCTSLMANLHRLGVTNCIVSCVDGR 448
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
EENE VV+Y L R+VKLVP G+D G G +R
Sbjct: 525 EENEQVVDYILTARNVKLVPLGVDIGVPGLSGFR 558
>gi|145512139|ref|XP_001441986.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409258|emb|CAK74589.1| unnamed protein product [Paramecium tetraurelia]
Length = 554
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 108/156 (69%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++FL+A++ RP+TIR NTL+TRR++LAQ LV RGVNLD +G W+KVGLVIY S VPIGA
Sbjct: 221 VAFLDANDAPRPITIRVNTLRTRRKELAQTLVQRGVNLDSVGDWTKVGLVIYESKVPIGA 280
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP R +AAA LMKN+GV+FAND
Sbjct: 281 TPEYLSGHYMLQSASSFLPVLALAPQMNERILDMAAAPGGKTTYIAQLMKNSGVIFANDT 340
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
SK+R KA+ N R+GV N +VT DGR++ K +N
Sbjct: 341 SKDREKALFYNLQRMGVTNCIVTNYDGRKFPKVMKN 376
>gi|156842997|ref|XP_001644568.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156115214|gb|EDO16710.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 633
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP++IRTNTLKTRRRDLAQALVN+GVNL PIG W+KVGL I++S VPIGA
Sbjct: 274 LEFFEANEVPRPISIRTNTLKTRRRDLAQALVNKGVNLQPIGAWTKVGLQIFDSQVPIGA 333
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
T EYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 334 TSEYLAGQYILQAASSFLPVVALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDA 393
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 394 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 425
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +VKLV +GL G EGF ++R K + P ++
Sbjct: 498 EEDEAVVDYALRKRPNVKLVESGLAIGKEGFTSFR-GKKFHPSLK 541
>gi|402589831|gb|EJW83762.1| NOL1/NOP2/sun family protein, partial [Wuchereria bancrofti]
Length = 382
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA++ RP+ IR+N+LKTRR +LA+ L+NRG+N+DP +W+K+GL++Y+S VP+GA
Sbjct: 86 LEFLEANDQPRPVIIRSNSLKTRRAELARNLINRGMNVDPAAEWTKIGLIVYDSQVPVGA 145
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQG S + +C AP + AALMKNTGVL+AND
Sbjct: 146 TPEYLAGHYMLQGLSSFLPVMALAPRPEETILDVCSAPGGKSSHIAALMKNTGVLYANDA 205
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R +A++GN HRLGV N+VV+ LDGR++ K
Sbjct: 206 NMQRCRAVIGNLHRLGVNNAVVSNLDGREFAK 237
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENEAVV+YALRKRD KLVP GLD G +GF +R+ + + P +
Sbjct: 311 EENEAVVDYALRKRDCKLVPMGLDVGVQGFTKFREYR-FHPSL 352
>gi|168051136|ref|XP_001778012.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670660|gb|EDQ57225.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 492
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 103/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLE++E RP+++RTNTLK+RRRDLAQ L+NRGVNLDP+GKW+KVGLV+Y S VP+GA
Sbjct: 184 LEFLESNEKPRPISLRTNTLKSRRRDLAQVLINRGVNLDPLGKWTKVGLVVYESQVPVGA 243
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQ S + AP AALMKNTGV++AN++
Sbjct: 244 TPEYMAGHYMLQSGSSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGVIYANEL 303
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ R K++ N HR+GV N+++ DGRQ
Sbjct: 304 KEPRIKSLSANLHRMGVTNTIICNYDGRQ 332
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 34/38 (89%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
ENEAVV+YALRKRDVK+VPTGL+FG EGF +R+++ +
Sbjct: 411 ENEAVVDYALRKRDVKIVPTGLEFGREGFTKFRESRFH 448
>gi|449462383|ref|XP_004148920.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Cucumis sativus]
gi|449484971|ref|XP_004157033.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
methyltransferase NOP2-like [Cucumis sativus]
Length = 611
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 219 MELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 278
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ G Y+LQGAS + AP ++ AALMKN+G++FAN++
Sbjct: 279 TPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGMIFANEI 338
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R K++ N HR+GV N+VV DG++ K
Sbjct: 339 KAQRLKSLTANLHRMGVTNTVVCNYDGKELPK 370
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
+ENEA+V+YALRKRDVKLVP GLDFG GF+ +R+ K + P + EK R P
Sbjct: 445 DENEAIVDYALRKRDVKLVPCGLDFGRPGFIRFRE-KRFHPSL-EKTRRFYP 494
>gi|302652446|ref|XP_003018073.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
gi|291181678|gb|EFE37428.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
Length = 690
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 100/148 (67%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 299 FSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP A+ALM+NTG + AND
Sbjct: 359 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++V+ LD R
Sbjct: 419 SKTRAKGLIGNIHRLGCKNTIVSNLDAR 446
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV YALRKR +VK+V TGL +FGT GF Y NK + +M
Sbjct: 524 EENEGVVQYALRKRPNVKIVDTGLGNFGTPGFKTY-MNKKFDDKM 567
>gi|451999452|gb|EMD91914.1| hypothetical protein COCHEDRAFT_1133863 [Cochliobolus
heterostrophus C5]
Length = 728
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 99/142 (69%), Gaps = 16/142 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL I+++ VP+GAT
Sbjct: 290 AFFEANETPRPIVIRTNTLRTHRRDLAQALINRGVQLEPVGKWSKVGLQIFDAQVPLGAT 349
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL GHYILQ AS + AP AALMKNTG +FAND +
Sbjct: 350 PEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDAN 409
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
K+R+K ++GN HRLG N +V+
Sbjct: 410 KDRAKGLIGNIHRLGARNVIVS 431
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL KR +VKLV TGL FG EGF K++ P M+
Sbjct: 513 EENEQVVQYALNKRPNVKLVETGLTFGKEGFTRI-GGKTFHPSMK 556
>gi|67619571|ref|XP_667654.1| nucleolar protein-like [Cryptosporidium hominis TU502]
gi|54658807|gb|EAL37423.1| nucleolar protein-like [Cryptosporidium hominis]
Length = 542
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 106/151 (70%), Gaps = 16/151 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E +RPLTIRTN LK+RRRDLAQ L++RG N+DP G+W+KVGL IY+S+VPIGA
Sbjct: 148 LDFFEANENKRPLTIRTNMLKSRRRDLAQKLISRGANVDPTGEWTKVGLTIYSSSVPIGA 207
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDV 104
TPEYL GHY++Q AS AP K +AAA LMKN+G+L+AND+
Sbjct: 208 TPEYLAGHYMIQSASSLIPVMALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDL 267
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
K+R ++ N HR+G+ NS+V +DG++ G
Sbjct: 268 RKDRCTGLIANLHRMGINNSIVVNMDGKELG 298
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENE VV+Y LR R VKLVP G++ G+ G +R+++ + P + R+ P
Sbjct: 372 EENEMVVDYILRTRHVKLVPLGVEIGSNGISKFREHR-FNPTISTYTRRIYP 422
>gi|66475704|ref|XP_627668.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
II]
gi|32398900|emb|CAD98365.1| nucleolar protein-like, probable [Cryptosporidium parvum]
gi|46229100|gb|EAK89949.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
II]
gi|323508963|dbj|BAJ77374.1| cgd6_3230 [Cryptosporidium parvum]
Length = 542
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 106/151 (70%), Gaps = 16/151 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E +RPLTIRTN LK+RRRDLAQ L++RG N+DP G+W+KVGL IY+S+VPIGA
Sbjct: 148 LDFFEANENKRPLTIRTNMLKSRRRDLAQKLISRGANVDPTGEWTKVGLTIYSSSVPIGA 207
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDV 104
TPEYL GHY++Q AS AP K +AAA LMKN+G+L+AND+
Sbjct: 208 TPEYLAGHYMIQSASSLIPVMALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDL 267
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
K+R ++ N HR+G+ NS+V +DG++ G
Sbjct: 268 RKDRCTGLIANLHRMGINNSIVVNMDGKELG 298
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENE V++Y LR R VKLVP G++ G+ G +R+++ + P + R+ P
Sbjct: 372 EENEMVIDYILRTRHVKLVPLGVEIGSNGISKFREHR-FNPTISTYTRRIYP 422
>gi|326436780|gb|EGD82350.1| hypothetical protein PTSG_03014 [Salpingoeca sp. ATCC 50818]
Length = 880
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 99/147 (67%), Gaps = 16/147 (10%)
Query: 4 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPE 63
LEA+E +RP+TIRTNTL+TR+RDL QAL NRGV+LD +G WSKVGLV++ S VPIGATPE
Sbjct: 325 LEANEVRRPVTIRTNTLRTRQRDLMQALSNRGVSLDSVGNWSKVGLVVFESNVPIGATPE 384
Query: 64 YLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKE 107
YL GHYI+Q AS + AP AALMKNTGVLFAND +K
Sbjct: 385 YLCGHYIIQSASSFLPVMALAPQPNERVLDMAAAPGGKTTYIAALMKNTGVLFANDANKA 444
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQY 134
R K++ N RLGV N+VV DGR +
Sbjct: 445 RIKSLAANISRLGVTNTVVCNYDGRSF 471
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
+ENE VVNYALRKR+VKLV TGL FG GF +YR
Sbjct: 546 DENEEVVNYALRKRNVKLVDTGLTFGRPGFKSYR 579
>gi|451854377|gb|EMD67670.1| hypothetical protein COCSADRAFT_34463 [Cochliobolus sativus ND90Pr]
Length = 728
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 99/142 (69%), Gaps = 16/142 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+ET RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL I+++ VP+GAT
Sbjct: 290 AFFEANETPRPIVIRTNTLRTHRRDLAQALINRGVQLEPVGKWSKVGLQIFDAQVPLGAT 349
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL GHYILQ AS + AP AALMKNTG +FAND +
Sbjct: 350 PEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDAN 409
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
K+R+K ++GN HRLG N +V+
Sbjct: 410 KDRAKGLIGNIHRLGARNVIVS 431
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL KR +VKLV TGL FG EGF K++ P M+
Sbjct: 513 EENEQVVQYALNKRPNVKLVETGLTFGKEGFTRI-GGKTFHPSMK 556
>gi|296817387|ref|XP_002849030.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Arthroderma otae CBS 113480]
gi|238839483|gb|EEQ29145.1| nucleolar protein NOP2 [Arthroderma otae CBS 113480]
Length = 683
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 100/148 (67%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 302 FSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 361
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP A+ALM+NTG + AND
Sbjct: 362 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSILANDA 421
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++V+ LD R
Sbjct: 422 SKTRAKGLIGNIHRLGCKNTIVSNLDAR 449
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV YALRKR +VK+V TGL FGT GF +Y NK + +M
Sbjct: 527 EENEGVVQYALRKRPNVKIVDTGLGSFGTPGFKSY-MNKKFDDKM 570
>gi|296423329|ref|XP_002841207.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Tuber melanosporum Mel28]
gi|295637442|emb|CAZ85398.1| unnamed protein product [Tuber melanosporum]
Length = 643
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E +RP IRTNTLKT RR+LAQAL+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 276 FSFFEANEKERPHVIRTNTLKTGRRELAQALINRGVTLEPVGKWSKVGLQIFESQVPLGA 335
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALMKNTG +FAND
Sbjct: 336 TPEYLAGHYILQAASSFLPVMALAPQENERILDMAAAPGGKTTYISALMKNTGCVFANDS 395
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
++ R+K ++GN HRLGV N++V D +++ K
Sbjct: 396 NRARTKGLIGNIHRLGVKNTIVCNYDAKEFPK 427
>gi|115443216|ref|XP_001218415.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus terreus NIH2624]
gi|114188284|gb|EAU29984.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624]
Length = 734
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 286 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 345
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 346 TPEYLAGHYILQAASSFLPVMALAPQPEERILDMAAAPGGKTTYISALMRNTGCVIANDA 405
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT LD R
Sbjct: 406 SKPRAKGLIGNIHRLGCKNTIVTNLDAR 433
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y L+KR +VKLV TGL DFG+ GF NY K + P+M
Sbjct: 511 EENEAVVQYVLKKRPNVKLVDTGLGDFGSPGFTNY-MGKHFDPKM 554
>gi|346322970|gb|EGX92568.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Cordyceps militaris
CM01]
Length = 633
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 100/150 (66%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S++P+GA
Sbjct: 258 FAFFEANEAPRPIVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSIPLGA 317
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AA+MKNTGV+ AND
Sbjct: 318 TPEYLAGHYILQAASSFLPVMALSPQPGERVLDMAAAPGGKTTHCAAMMKNTGVIVANDP 377
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+K ++GN HRLG N +V D R++
Sbjct: 378 NKARAKGLIGNIHRLGAKNVIVCSYDAREF 407
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +++LV TGL FG EGF +Y K++ P ++
Sbjct: 481 EENEQVVAYALSRRPNIRLVDTGLPFGKEGFTSY-MGKTFDPSLK 524
>gi|148910608|gb|ABR18374.1| unknown [Picea sitchensis]
gi|224286369|gb|ACN40892.1| unknown [Picea sitchensis]
Length = 641
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +EA+E RP +RTNTLKTRRRDLA L+NRGVNLDP+GKWSKVGL++Y+S VPIGA
Sbjct: 219 VELIEANEISRPTCLRTNTLKTRRRDLAGVLINRGVNLDPLGKWSKVGLIVYDSQVPIGA 278
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQ AS + AP AALMKNTG+++AN++
Sbjct: 279 TPEYMAGHYMLQSASSFLPVMALAPQEKERVLDMAAAPGGKTTYIAALMKNTGIIYANEL 338
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV NS++ DGR+ K
Sbjct: 339 KNSRLKSLSANIHRMGVTNSIICNYDGRELPK 370
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAVVNYAL KRDVK+VP GLDFG GFV +R+++ + P + EK R P
Sbjct: 446 ENEAVVNYALSKRDVKVVPCGLDFGQHGFVRFREHR-FHPSL-EKTRRFYP 494
>gi|302501985|ref|XP_003012984.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
gi|291176545|gb|EFE32344.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
Length = 689
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 100/148 (67%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 298 FSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP A+ALM+NTG + AND
Sbjct: 358 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++V+ +D R
Sbjct: 418 SKTRAKGLIGNIHRLGCKNTIVSNMDAR 445
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV YALRKR +VK+V TGL +FGT GF +Y NK + +M
Sbjct: 523 EENEGVVQYALRKRPNVKIVDTGLGNFGTPGFKSY-MNKKFDEKM 566
>gi|169771881|ref|XP_001820410.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus oryzae RIB40]
gi|83768269|dbj|BAE58408.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874756|gb|EIT83601.1| tRNA and rRNA cytosine-C5-methylase [Aspergillus oryzae 3.042]
Length = 751
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 287 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 346
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 347 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYISALMRNTGCVIANDA 406
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT LD R
Sbjct: 407 SKPRAKGLIGNIHRLGCKNTLVTHLDAR 434
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNY 170
EENEAVV Y LRKR +VK+V TGL DFG+ GF Y
Sbjct: 512 EENEAVVQYVLRKRPNVKIVDTGLGDFGSPGFKEY 546
>gi|330790279|ref|XP_003283225.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
gi|325086906|gb|EGC40289.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
Length = 672
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 104/150 (69%), Gaps = 17/150 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RPLTIR NTLKTRR+DLA+AL+ RGV+L+PI KWS+VGL IY++ V IGA
Sbjct: 273 LEFFEANETHRPLTIRANTLKTRRKDLAEALIARGVHLEPI-KWSQVGLTIYDTQVAIGA 331
Query: 61 TPEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YI Q AS + +CA P AA+MKNTG L ANDV
Sbjct: 332 TPEYLAGQYIQQSASSFLPVLALAPQPNERVLDMCASPGGKTTYIAAMMKNTGTLVANDV 391
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+KER K++V N HRLGV N VV+ +DGR+Y
Sbjct: 392 NKERIKSLVANIHRLGVKNCVVSNMDGREY 421
>gi|119499195|ref|XP_001266355.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Neosartorya fischeri NRRL
181]
gi|119414519|gb|EAW24458.1| nucleolar RNA methyltransferase (Nop2), putative [Neosartorya
fischeri NRRL 181]
Length = 750
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 102/148 (68%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 294 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 353
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP R +AA ALM+NTG + AND
Sbjct: 354 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVIANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT LD R
Sbjct: 414 SKPRAKGLIGNIHRLGCKNTIVTNLDAR 441
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VKLV TGL DFG+ GF +Y K + P+M
Sbjct: 519 EENEAVVQYVLRKRPNVKLVDTGLGDFGSPGFTSY-MGKKFDPKM 562
>gi|327301379|ref|XP_003235382.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326462734|gb|EGD88187.1| nucleolar protein NOP2 [Trichophyton rubrum CBS 118892]
Length = 690
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 100/148 (67%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 299 FSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP A+ALM+NTG + AND
Sbjct: 359 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++V+ +D R
Sbjct: 419 SKTRAKGLIGNIHRLGCKNTIVSNMDAR 446
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV YALRKR +VK+V TGL +FGT GF ++ NK + +M
Sbjct: 524 EENEGVVQYALRKRPNVKIVDTGLGNFGTPGFKSF-MNKKFDDKM 567
>gi|303319389|ref|XP_003069694.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240109380|gb|EER27549.1| Nucleolar protein NOP2, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 682
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 103/148 (69%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 293 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 352
Query: 61 TPEYLGGHYILQGASKYWIC-----APH-RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA ALM+NTG + AND
Sbjct: 353 TPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMSALMRNTGCVLANDA 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
+KER+K ++GN HRLG N++V+ LD R
Sbjct: 413 NKERAKGLIGNIHRLGCKNTIVSNLDAR 440
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VK+V TGL +FG+EGF +Y+ K + P M
Sbjct: 518 EENEAVVQYVLRKRPNVKIVDTGLGNFGSEGFKSYK-GKQFDPRM 561
>gi|67902172|ref|XP_681342.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
gi|40740505|gb|EAA59695.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
gi|259480830|tpe|CBF73828.1| TPA: nucleolar RNA methyltransferase (Nop2), putative
(AFU_orthologue; AFUA_5G01760) [Aspergillus nidulans
FGSC A4]
Length = 788
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 303 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 362
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 363 TPEYLAGHYILQAASSFLPVMALAPQENERILDMASAPGGKTTYISALMRNTGCVIANDA 422
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT LD R
Sbjct: 423 SKPRAKGLIGNIHRLGCKNTIVTNLDAR 450
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 28/35 (80%), Gaps = 2/35 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNY 170
EENEAVV Y L+KR +VKLV TGL DFG+ GF +Y
Sbjct: 528 EENEAVVQYVLKKRPNVKLVETGLGDFGSPGFTHY 562
>gi|320040863|gb|EFW22796.1| nucleolar RNA methyltransferase [Coccidioides posadasii str.
Silveira]
Length = 682
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 103/148 (69%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 293 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 352
Query: 61 TPEYLGGHYILQGASKYWIC-----APH-RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA ALM+NTG + AND
Sbjct: 353 TPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMSALMRNTGCVLANDA 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
+KER+K ++GN HRLG N++V+ LD R
Sbjct: 413 NKERAKGLIGNIHRLGCKNTIVSNLDAR 440
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VK+V TGL +FG+EGF +Y+ K + P M
Sbjct: 518 EENEAVVQYVLRKRPNVKIVDTGLGNFGSEGFKSYK-GKQFDPRM 561
>gi|119182737|ref|XP_001242484.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Coccidioides immitis RS]
gi|392865382|gb|EAS31163.2| nucleolar RNA methyltransferase [Coccidioides immitis RS]
Length = 682
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 103/148 (69%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 293 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 352
Query: 61 TPEYLGGHYILQGASKYWIC-----APH-RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA ALM+NTG + AND
Sbjct: 353 TPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMSALMRNTGCVLANDA 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
+KER+K ++GN HRLG N++V+ LD R
Sbjct: 413 NKERAKGLIGNIHRLGCKNTIVSNLDAR 440
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VK+V TGL +FG+EGF +Y+ K + P M
Sbjct: 518 EENEAVVQYVLRKRPNVKIVDTGLGNFGSEGFKSYK-GKQFDPRM 561
>gi|326468870|gb|EGD92879.1| nucleolar protein NOP2 [Trichophyton tonsurans CBS 112818]
Length = 690
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 100/148 (67%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 299 FSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP A+ALM+NTG + AND
Sbjct: 359 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++V+ +D R
Sbjct: 419 SKTRAKGLIGNIHRLGCKNTIVSNMDAR 446
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV YALRKR +VK+V TGL +FGT GF +Y NK + M
Sbjct: 524 EENEGVVQYALRKRPNVKIVDTGLGNFGTPGFKSY-MNKKFDDRM 567
>gi|300121088|emb|CBK21470.2| unnamed protein product [Blastocystis hominis]
Length = 690
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ + +A+E+ RPL IRTNTLKTRRRDLAQ L+NRG+NLDP+G+WS++GL IY++ VPIGA
Sbjct: 192 VEWFDANESDRPLVIRTNTLKTRRRDLAQVLINRGINLDPLGEWSRLGLKIYDTPVPIGA 251
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS +C AP A LMKNTGVL AND+
Sbjct: 252 TPEYLAGHYMLQSASSMLPVMALNPQPNERILDMCAAPGGKTTHIAQLMKNTGVLVANDL 311
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
KER A V N HRLGV N++VT G ++ K
Sbjct: 312 KKERLIATVANLHRLGVTNTIVTNYHGCKFPK 343
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
ENEAVVNYALRKR VKLV TGL FGT GF ++RQ K Y P M
Sbjct: 417 ENEAVVNYALRKRHVKLVDTGLTFGTPGFTSFRQFK-YHPSM 457
>gi|326480150|gb|EGE04160.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Trichophyton equinum CBS
127.97]
Length = 690
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 100/147 (68%), Gaps = 16/147 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
SF EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GAT
Sbjct: 300 SFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGAT 359
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL GHYILQ AS + AP A+ALM+NTG + AND S
Sbjct: 360 PEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSILANDAS 419
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGR 132
K R+K ++GN HRLG N++V+ +D R
Sbjct: 420 KTRAKGLIGNIHRLGCKNTIVSNMDAR 446
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV YALRKR +VK+V TGL +FGT GF +Y NK + M
Sbjct: 524 EENEGVVQYALRKRPNVKIVDTGLGNFGTPGFKSY-MNKKFDDRM 567
>gi|238485520|ref|XP_002373998.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus flavus NRRL3357]
gi|220698877|gb|EED55216.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
flavus NRRL3357]
Length = 751
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 287 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 346
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 347 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYISALMRNTGCVIANDA 406
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT LD R
Sbjct: 407 SKPRAKGLIGNIHRLGCKNTLVTHLDAR 434
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNY 170
EENEAVV Y LRKR +VK+V TGL DFG+ GF Y
Sbjct: 512 EENEAVVQYVLRKRPNVKIVDTGLGDFGSPGFKEY 546
>gi|449701642|gb|EMD42424.1| proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica KU27]
Length = 503
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 108/153 (70%), Gaps = 19/153 (12%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RP+TIR NTLK+RRR+LAQ L+NRGVN+D I +WSK GLV+Y+S VPIGA
Sbjct: 210 VDFMEANEAPRPVTIRVNTLKSRRRELAQKLINRGVNVDMI-EWSKSGLVVYDSQVPIGA 268
Query: 61 TPEYLGGHYILQGASKYWIC----APHRAAKL-------------AAALMKNTGVLFAND 103
TPEYL G YILQ +S W+ AP K+ AALMK+TGVL AND
Sbjct: 269 TPEYLAGQYILQSSSS-WVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVAND 327
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+SK+R KA++GN HRLG+ N+++T DG ++ K
Sbjct: 328 ISKDRLKAVIGNVHRLGITNTIITNCDGHEFPK 360
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%), Gaps = 2/37 (5%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLD--FGTEGFVNYRQ 172
EENEAV++YAL+KR+VK+VP L G +G+VN+RQ
Sbjct: 433 EENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ 469
>gi|428162505|gb|EKX31642.1| hypothetical protein GUITHDRAFT_82915 [Guillardia theta CCMP2712]
Length = 444
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEASE QRP+T+RTNTLKTRR++LA AL+ RGVNLDPI +WS VGLV+Y+S+VP+GA
Sbjct: 86 IEFLEASERQRPVTLRTNTLKTRRKELATALIARGVNLDPIDRWSSVGLVVYDSSVPVGA 145
Query: 61 TPEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + +CA P AA+MKN G++ +ND
Sbjct: 146 TPEYLAGHYMLQSASSFLPVMALSAGEHEKVLDMCASPGGKTTYIAAMMKNAGMIVSNDA 205
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
+++R K++VGN R+GV N+VVT DGR
Sbjct: 206 NEKRLKSLVGNIQRMGVRNAVVTNYDGR 233
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKRDVKLVPT-GLDFGTEGFVNYRQNKSYRPEM 180
EENEAV++YAL+KR VKL+ T GLDFG G+ YR K + P +
Sbjct: 310 EENEAVIDYALKKRHVKLLDTAGLDFGVPGYGRYR-GKQFHPSV 352
>gi|356569611|ref|XP_003552992.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Glycine max]
Length = 610
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 100/152 (65%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 207 MELIEAFEKPRPMCLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 266
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEY+ G Y+LQ AS + AP AALMKNTG++FAN++
Sbjct: 267 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGIIFANEM 326
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ GN HR+GV N+VV DG++ K
Sbjct: 327 KVPRLKSLTGNLHRMGVSNTVVCNYDGKELPK 358
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KRDVKLVP GLDFG GF +R+ + + P + EK R P
Sbjct: 434 ENEAVIDYALKKRDVKLVPCGLDFGRPGFTRFREQR-FHPSL-EKTRRFYP 482
>gi|70985320|ref|XP_748166.1| nucleolar RNA methyltransferase (Nop2) [Aspergillus fumigatus
Af293]
gi|66845794|gb|EAL86128.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
fumigatus Af293]
gi|159125911|gb|EDP51027.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
fumigatus A1163]
Length = 751
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 294 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 354 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVIANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT LD R
Sbjct: 414 SKPRAKGLIGNIHRLGCKNTIVTNLDAR 441
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV YALRKR +VKLV TGL DFG+ GF +Y K + P+M
Sbjct: 519 EENEAVVQYALRKRPNVKLVDTGLGDFGSPGFTSY-MGKKFDPKM 562
>gi|401401630|ref|XP_003881058.1| ribosomal RNA small subunit methyltransferase F (RRNA(Cytosine-C)),
related [Neospora caninum Liverpool]
gi|325115470|emb|CBZ51025.1| ribosomal RNA small subunit methyltransferase F (RRNA(Cytosine-C)),
related [Neospora caninum Liverpool]
Length = 803
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 102/147 (69%), Gaps = 16/147 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+E RP+T+RTN+LKTRRRDLA AL+ RG N+DP+G W+KVGL +Y S+VP+GAT
Sbjct: 301 AFFEANEENRPMTLRTNSLKTRRRDLAAALIARGCNVDPLGDWTKVGLKVYESSVPVGAT 360
Query: 62 PEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDVS 105
PEYL GHY+LQ A+ AP K +AAA L+KN G+LFAND
Sbjct: 361 PEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPGGKTTYIAQLLKNEGILFANDAK 420
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGR 132
KER +++ N HRLGV N +V+C+DGR
Sbjct: 421 KERCTSLMANLHRLGVTNCIVSCVDGR 447
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
EENE VV+Y L R VKLVP G+D G G +R
Sbjct: 524 EENEQVVDYILTARKVKLVPLGVDIGVPGLSGFR 557
>gi|67479223|ref|XP_654993.1| Proliferating-cell nucleolar antigen p120 [Entamoeba histolytica
HM-1:IMSS]
gi|56472094|gb|EAL49607.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 495
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 108/153 (70%), Gaps = 19/153 (12%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RP+TIR NTLK+RRR+LAQ L+NRGVN+D I +WSK GLV+Y+S VPIGA
Sbjct: 202 VDFMEANEAPRPVTIRVNTLKSRRRELAQKLINRGVNVDMI-EWSKSGLVVYDSQVPIGA 260
Query: 61 TPEYLGGHYILQGASKYWIC----APHRAAKL-------------AAALMKNTGVLFAND 103
TPEYL G YILQ +S W+ AP K+ AALMK+TGVL AND
Sbjct: 261 TPEYLAGQYILQSSSS-WVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVAND 319
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+SK+R KA++GN HRLG+ N+++T DG ++ K
Sbjct: 320 ISKDRLKAVIGNVHRLGITNTIITNCDGHEFPK 352
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%), Gaps = 2/37 (5%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLD--FGTEGFVNYRQ 172
EENEAV++YAL+KR+VK+VP L G +G+VN+RQ
Sbjct: 425 EENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ 461
>gi|315049127|ref|XP_003173938.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Arthroderma gypseum CBS
118893]
gi|311341905|gb|EFR01108.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS
118893]
Length = 696
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 100/148 (67%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 299 FSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 358
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP A+ALM+NTG + AND
Sbjct: 359 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYASALMRNTGSILANDA 418
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++V+ +D R
Sbjct: 419 SKTRAKGLIGNIHRLGCKNTIVSNMDAR 446
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV YALRKR +VK+V TGL FGT GF +Y NK + +M
Sbjct: 524 EENEGVVQYALRKRPNVKIVDTGLGSFGTPGFKSY-MNKKFDDKM 567
>gi|121719340|ref|XP_001276369.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus clavatus NRRL 1]
gi|119404567|gb|EAW14943.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
clavatus NRRL 1]
Length = 755
Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 102/148 (68%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 296 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 355
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP R +AA ALM+NTG + AND
Sbjct: 356 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVVANDA 415
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT LD R
Sbjct: 416 SKPRAKGLIGNIHRLGCKNTIVTNLDAR 443
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VKLV TGL DFGT GF Y K + P+M
Sbjct: 521 EENEAVVQYVLRKRPNVKLVDTGLGDFGTPGFTAY-MGKKFDPKM 564
>gi|400596163|gb|EJP63947.1| NOL1/NOP2/sun family protein [Beauveria bassiana ARSEF 2860]
Length = 631
Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 100/150 (66%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F E++E RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL ++ S++P+GA
Sbjct: 258 FAFFESNEAPRPIVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQVFESSIPLGA 317
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AA+MKNTGV+ AND
Sbjct: 318 TPEYLAGHYILQAASSFLPVMALSPQPGERVLDMAAAPGGKTTHCAAMMKNTGVVVANDP 377
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+K ++GN HRLG N +V D R++
Sbjct: 378 NKARAKGLIGNIHRLGAKNVIVCSYDAREF 407
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL +R +V+LV T L FG EGF +Y K++ P ++
Sbjct: 481 EENEQVVAYALSRRPNVRLVDTELPFGKEGFTSY-MGKTFDPSLK 524
>gi|452982279|gb|EME82038.1| hypothetical protein MYCFIDRAFT_165230 [Pseudocercospora fijiensis
CIRAD86]
Length = 658
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+++ +A+ET RP+ IRTNTL+T RRDLA AL+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 271 LAYFDANETPRPMVIRTNTLRTHRRDLAHALINRGVTLEPVGKWSKVGLQIFESQVPLGA 330
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALM+NTGV+F+ND
Sbjct: 331 TPEYLAGHYILQAASSFLPAMALAPQEHERVLDMAAAPGGKTTHLAALMRNTGVIFSNDS 390
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R+K ++GN HRLGV N+VV ++ K
Sbjct: 391 NKDRAKGLIGNIHRLGVKNTVVCNYSALEFPK 422
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENE VV Y L KR +VKLVPTGL FG EGFV Y Q K + M+E
Sbjct: 495 EENEQVVQYVLNKRPNVKLVPTGLAFGKEGFVKY-QAKRFHQSMKE 539
>gi|452841420|gb|EME43357.1| hypothetical protein DOTSEDRAFT_72685 [Dothistroma septosporum
NZE10]
Length = 660
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F +A+ET RP+ IRTNTL+T RRDLA +L+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 278 LAFFDANETPRPMVIRTNTLRTHRRDLAHSLINRGVTLEPVGKWSKVGLQIFESQVPLGA 337
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALM+NTG +F+ND
Sbjct: 338 TPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHLAALMRNTGCIFSNDA 397
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K+R+K ++GN HRLGV N++V Q+
Sbjct: 398 NKDRAKGLIGNIHRLGVKNTIVCNYSALQF 427
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EE+E VV Y L KR ++KLVPTGL FG EGF Y Q+K + P M+E
Sbjct: 502 EEDEQVVQYVLNKRPNIKLVPTGLVFGKEGFTRY-QSKRFHPSMKE 546
>gi|340522301|gb|EGR52534.1| predicted protein [Trichoderma reesei QM6a]
Length = 688
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL I+ + VP+GA
Sbjct: 293 FAFFEANEMPRPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQIFETNVPLGA 352
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+Q A+ + AP +A+M NTGV+FAND
Sbjct: 353 TPEYLAGHYIIQAAASFLPVMALSPQPNERVLDMASAPGGKTTYCSAMMNNTGVVFANDP 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+KER+K ++GN RLGV N +V DGR++
Sbjct: 413 NKERAKGLIGNVARLGVRNVIVCSYDGREF 442
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVVNYAL +R +VKLV TG+ FG EGF ++ K + P ++
Sbjct: 517 EENEAVVNYALSRRPNVKLVDTGIPFGKEGFTSF-MGKKFHPSLK 560
>gi|66812796|ref|XP_640577.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
gi|60468601|gb|EAL66604.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
Length = 647
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 136/267 (50%), Gaps = 89/267 (33%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+ET RPLTIR NTLK RR+DLA+AL+ RGV+L+PI KWS+VGL IY++ V IGA
Sbjct: 273 LEFFEANETHRPLTIRANTLKVRRKDLAEALIARGVHLEPI-KWSQVGLTIYDTQVAIGA 331
Query: 61 TPEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YI Q AS + +CA P AA+MKNTG L ANDV
Sbjct: 332 TPEYLAGQYIQQSASSFLPVLALAPQPNERVLDMCASPGGKTTYIAAMMKNTGTLVANDV 391
Query: 105 SKERSKAIVGNFHR----------------------------------LGVIN------- 123
+K+R K++V N HR LGVI+
Sbjct: 392 NKDRIKSLVANIHRLGVKNCMVSNLDGRQYPSVLSGFDRVLVDAPCVGLGVISKDPQIKI 451
Query: 124 -----SVVTC-----------LDGRQYGKP--------------EENEAVVNYALRKRDV 153
V+TC +D P EENEAVV+YALR RDV
Sbjct: 452 SKSEQDVITCTHTQKELLLKAIDSVDASSPTGGIIVYSTCSLTVEENEAVVDYALRNRDV 511
Query: 154 KLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+V T ++FG +GF ++R+++ + P +
Sbjct: 512 IVVDTTIEFGVDGFTSFRESR-FHPSL 537
>gi|328850880|gb|EGG00040.1| hypothetical protein MELLADRAFT_45567 [Melampsora larici-populina
98AG31]
Length = 468
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F EA+ET RP+TIRTNTL+T RRDLAQ L+NRGVNL+PIGKWSKVGL ++ S+VPIGA
Sbjct: 74 LAFFEANETARPVTIRTNTLRTNRRDLAQCLINRGVNLEPIGKWSKVGLQVFESSVPIGA 133
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + AP +A+M+NTGVLFAND
Sbjct: 134 TPEYLAGQYMLQAASSFLPVIALAPQPNERCLDMSAAPGGKTTFMSAMMQNTGVLFANDA 193
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
SK R K+++ N RLG N V+ D R++ K
Sbjct: 194 SKNRCKSLMANVTRLGCHNVVICNHDAREFPK 225
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 36/45 (80%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE+VV+YALRKR +VKLV +GL FG EGF N+R K++ P ++
Sbjct: 298 EENESVVDYALRKRPNVKLVESGLTFGREGFTNFR-GKTFHPSLK 341
>gi|321252144|ref|XP_003192304.1| nucleolar RNA m(5)C methyltransferase; Nop2p [Cryptococcus gattii
WM276]
gi|317458772|gb|ADV20517.1| Nucleolar RNA m(5)C methyltransferase, putative; Nop2p
[Cryptococcus gattii WM276]
Length = 696
Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F E++E+ RP+TIR NTL+TRRRDLAQAL+NRGV L+PIGKWSKVGL ++ S VPIGA
Sbjct: 329 LAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPIGA 388
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +AL++NTG++FAND
Sbjct: 389 TPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTYISALLQNTGIVFANDS 448
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HR+G N VV D R++ K
Sbjct: 449 NKARTKSLTANVHRMGCKNVVVCNYDAREFPK 480
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENE+VV+YALRKR +VKLV TGLDFG GF ++
Sbjct: 553 DENESVVDYALRKRPNVKLVETGLDFGVHGFKSFE 587
>gi|358389714|gb|EHK27306.1| hypothetical protein TRIVIDRAFT_114247, partial [Trichoderma virens
Gv29-8]
Length = 684
Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL I+ + VP+GA
Sbjct: 291 FAFFEANEMARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQIFEANVPLGA 350
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+Q A+ + AP +A+M NTG++FAND
Sbjct: 351 TPEYLAGHYIIQAAASFLPVMALSPQPNERVLDMASAPGGKTTYCSAMMNNTGIVFANDP 410
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+KER+K ++GN RLGV N +V DGR++
Sbjct: 411 NKERAKGLIGNVARLGVRNVIVCSYDGREF 440
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE+VV YAL +R +VKLV G+ FG EGF +Y K + P ++
Sbjct: 515 EENESVVAYALSRRPNVKLVDAGIPFGKEGFTSY-MGKKFHPSLK 558
>gi|398394152|ref|XP_003850535.1| hypothetical protein MYCGRDRAFT_74360, partial [Zymoseptoria
tritici IPO323]
gi|339470413|gb|EGP85511.1| hypothetical protein MYCGRDRAFT_74360 [Zymoseptoria tritici IPO323]
Length = 658
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F +A+ET RP+ IRTNTL+T RRDLA AL+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 283 LAFFDANETPRPMVIRTNTLRTHRRDLAHALINRGVTLEPVGKWSKVGLQIFESQVPLGA 342
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALM+NTG +F+ND
Sbjct: 343 TPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHLAALMRNTGCIFSNDS 402
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R+K ++GN HRLGV N+VV ++ K
Sbjct: 403 NKDRAKGLIGNIHRLGVKNTVVCNYSALEFPK 434
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENE VV Y L KR +VKLVPTGL FG EGF Y Q+K + P M+E
Sbjct: 507 EENEQVVQYVLNKRPNVKLVPTGLIFGKEGFTKY-QSKRFHPSMKE 551
>gi|58263482|ref|XP_569151.1| nucleolus protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134108332|ref|XP_777117.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259802|gb|EAL22470.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223801|gb|AAW41844.1| nucleolus protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 695
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F E++E+ RP+TIR NTL+TRRRDLAQAL+NRGV L+PIGKWSKVGL ++ S VPIGA
Sbjct: 328 LAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPIGA 387
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +AL++NTG++FAND
Sbjct: 388 TPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTYISALLQNTGIVFANDS 447
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HR+G N VV D R++ K
Sbjct: 448 NKARTKSLTANVHRMGCKNVVVCNYDAREFPK 479
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNY 170
+ENE+VV+YALRKR +VKLV TGLDFG GF ++
Sbjct: 552 DENESVVDYALRKRPNVKLVETGLDFGVHGFKSF 585
>gi|258571405|ref|XP_002544506.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
gi|237904776|gb|EEP79177.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
Length = 1027
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 100/148 (67%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 249 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 308
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 309 TPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYMSALMRNTGCVMANDA 368
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
+KER+K ++GN HRLG N++VT LD R
Sbjct: 369 NKERAKGLIGNIHRLGCKNTIVTNLDAR 396
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +V++V TGL FG+EGF +Y+ K + P+M
Sbjct: 474 EENEAVVQYVLRKRPNVRIVDTGLGTFGSEGFKSYK-GKQFDPKM 517
>gi|453084235|gb|EMF12280.1| NOL1/NOP2/sun family putative RNA met [Mycosphaerella populorum
SO2202]
Length = 674
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F +A+ET RP+ IRTNTL+T RRDLA +L+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 275 LQFFDANETPRPMVIRTNTLRTHRRDLAHSLINRGVTLEPVGKWSKVGLQIFESQVPLGA 334
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AALM+NTGV+F+ND
Sbjct: 335 TPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAAAPGGKTTHLAALMRNTGVIFSNDS 394
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R+K ++GN HRLGV N++V ++ K
Sbjct: 395 NKDRAKGLIGNIHRLGVKNTIVCNYSALEFPK 426
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENE VV Y L KR +VKLVPTGL FG EGF + Q+K + P M+E
Sbjct: 499 EENEQVVQYVLNKRPNVKLVPTGLVFGKEGFTKF-QSKRFYPSMKE 543
>gi|145251900|ref|XP_001397463.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus niger CBS 513.88]
gi|134083004|emb|CAK42767.1| unnamed protein product [Aspergillus niger]
Length = 762
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 284 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 343
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+Q AS + AP +ALM+NTG + AND
Sbjct: 344 TPEYLAGHYIIQAASSFLPVMALAPQPNERVLDMASAPGGKTTYISALMRNTGCVIANDA 403
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT +D R
Sbjct: 404 SKPRAKGLIGNIHRLGCKNTIVTNMDAR 431
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VKLV TGL DFG+ G +Y K + P+M
Sbjct: 509 EENEAVVQYVLRKRPNVKLVDTGLGDFGSPGMTSY-MGKHFDPKM 552
>gi|405118456|gb|AFR93230.1| nucleolar protein [Cryptococcus neoformans var. grubii H99]
Length = 695
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F E++E+ RP+TIR NTL+TRRRDLAQAL+NRGV L+PIGKWSKVGL ++ S VPIGA
Sbjct: 328 LAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPIGA 387
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +AL++NTG++FAND
Sbjct: 388 TPEYLAGHYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTYISALLQNTGIVFANDS 447
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HR+G N VV D R++ K
Sbjct: 448 NKARTKSLTANVHRMGCKNVVVCNYDAREFPK 479
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNY 170
+ENE+VV+YALRKR +VKLV TGLDFG GF ++
Sbjct: 552 DENESVVDYALRKRPNVKLVETGLDFGVHGFKSF 585
>gi|452823461|gb|EME30471.1| RNA cytosine methyltransferase [Galdieria sulphuraria]
Length = 572
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 103/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F+EAS+ RPL IRTNTLKT+RR LAQAL++RGVN+DP+ WSK GLV+Y S VPIGA
Sbjct: 273 MEFIEASDKPRPLVIRTNTLKTKRRQLAQALISRGVNVDPLENWSKEGLVVYESRVPIGA 332
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+Y++Q +S + +P +ALM+NTG+++AND
Sbjct: 333 TPEYLAGYYMIQASSSFIPVLALSPQEKEKILDMAASPGGKTTFVSALMRNTGIVYANDS 392
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ +R K++V N HRLGV N++V+C DGR+
Sbjct: 393 NADRIKSLVANIHRLGVENTIVSCYDGRK 421
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENEAV++Y L+ R VK+V +G+ FG GF YR K + P +QE
Sbjct: 497 EENEAVIDYCLKHRFVKVVSSGIPFGIPGFTKYR-GKQFHPSLQE 540
>gi|225554205|gb|EEH02543.1| nucleolar protein NOP2 [Ajellomyces capsulatus G186AR]
Length = 704
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL I+ S +P+GA
Sbjct: 281 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQIFESAIPLGA 340
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP R +AA ALM+NTG + AND
Sbjct: 341 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVLANDA 400
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N++++ LD RQ
Sbjct: 401 SKPRAKGLIGNIHRLGCKNTIISNLDARQ 429
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNK 174
EENEAVV YALR R +VK+V TGL +FGT GF +Y K
Sbjct: 506 EENEAVVQYALRNRPNVKIVDTGLGNFGTPGFKSYMGKK 544
>gi|407036203|gb|EKE38056.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
nuttalli P19]
Length = 497
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 108/153 (70%), Gaps = 19/153 (12%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RP+TIR NTLK+RRR+LAQ L+NRGVN+D + +WSK GLV+Y+S VPIGA
Sbjct: 204 VDFMEANEAPRPVTIRVNTLKSRRRELAQKLINRGVNVDMV-EWSKSGLVVYDSQVPIGA 262
Query: 61 TPEYLGGHYILQGASKYWIC----APHRAAKL-------------AAALMKNTGVLFAND 103
TPEYL G YILQ +S W+ AP K+ AALMK+TGVL AND
Sbjct: 263 TPEYLAGQYILQSSSS-WVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVAND 321
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+SK+R KA++GN HRLG+ N+++T DG ++ K
Sbjct: 322 ISKDRLKAVIGNVHRLGITNTIITNYDGHEFPK 354
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%), Gaps = 2/37 (5%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLD--FGTEGFVNYRQ 172
EENEAV++YAL+KR+VK+VP L G +G+VN+RQ
Sbjct: 427 EENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ 463
>gi|261200155|ref|XP_002626478.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239593550|gb|EEQ76131.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
gi|239607570|gb|EEQ84557.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ER-3]
Length = 654
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 274 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 333
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP R +AA ALM+NTG + AND
Sbjct: 334 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVLANDA 393
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N++V+ LD R+
Sbjct: 394 SKPRAKGLIGNIHRLGCKNTIVSNLDARE 422
>gi|255955391|ref|XP_002568448.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590159|emb|CAP96330.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 733
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 274 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 333
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 334 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYMSALMRNTGCVVANDA 393
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT +D R
Sbjct: 394 SKPRAKGLIGNIHRLGCKNTIVTNMDAR 421
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VK+V TGL FG+ GF++Y K++ P+M
Sbjct: 499 EENEAVVQYVLRKRPNVKIVDTGLGGFGSPGFLSY-MGKTFDPKM 542
>gi|425775228|gb|EKV13508.1| Nucleolar RNA methyltransferase (Nop2), putative [Penicillium
digitatum Pd1]
gi|425779664|gb|EKV17704.1| Nucleolar RNA methyltransferase (Nop2), putative [Penicillium
digitatum PHI26]
Length = 732
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 273 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESPVPLGA 332
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 333 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASAPGGKTTYMSALMRNTGCVVANDA 392
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT +D R
Sbjct: 393 SKPRAKGLIGNIHRLGCKNTIVTNMDAR 420
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VK+V TGL +FG+ GF++Y KS+ P+M
Sbjct: 498 EENEAVVQYVLRKRPNVKIVDTGLGNFGSPGFLSY-MGKSFDPKM 541
>gi|358368159|dbj|GAA84776.1| nucleolar RNA methyltransferase [Aspergillus kawachii IFO 4308]
Length = 758
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 284 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 343
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+Q AS + AP +ALM+NTG + AND
Sbjct: 344 TPEYLAGHYIIQAASSFLPVMALAPQPNERVLDMASAPGGKTTYISALMRNTGCVIANDA 403
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT +D R
Sbjct: 404 SKPRAKGLIGNIHRLGCKNTIVTNMDAR 431
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VKLV TGL DFG+ G +Y K + P+M
Sbjct: 509 EENEAVVQYVLRKRPNVKLVDTGLGDFGSPGMTSY-MGKHFDPKM 552
>gi|240277116|gb|EER40626.1| nucleolar protein NOP2 [Ajellomyces capsulatus H143]
gi|325096756|gb|EGC50066.1| nucleolar protein NOP2 [Ajellomyces capsulatus H88]
Length = 670
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL I+ S +P+GA
Sbjct: 282 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQIFESAIPLGA 341
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 342 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVLANDA 401
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N++++ LD RQ
Sbjct: 402 SKPRAKGLIGNIHRLGCKNTIISNLDARQ 430
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNK 174
EENEAVV YALR R +VK+V TGL +FGT GF +Y K
Sbjct: 507 EENEAVVQYALRNRPNVKIVDTGLGNFGTPGFKSYMGKK 545
>gi|159476732|ref|XP_001696465.1| hypothetical protein CHLREDRAFT_38989 [Chlamydomonas reinhardtii]
gi|158282690|gb|EDP08442.1| predicted protein [Chlamydomonas reinhardtii]
Length = 360
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +EA+E RP+T+RTNTLKTRRR+LA AL+ RGV+LDPIG WSKVGLV+Y + VPIGA
Sbjct: 65 LELMEANEVPRPVTLRTNTLKTRRRELAAALIQRGVSLDPIGPWSKVGLVVYETKVPIGA 124
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQGAS + AP AALM+NTG +FAN++
Sbjct: 125 TPEYMAGHYMLQGASSFMPVMALAPQPEETVVDMAAAPGGKTTYIAALMRNTGTVFANEI 184
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+K+R K+I GN RLGV N+VV DG++
Sbjct: 185 NKDRLKSITGNLTRLGVTNTVVCNYDGKE 213
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EE+EAVVNYALRKR+VK+VPTGL+FG EGF+ YR + + P ++
Sbjct: 291 EEDEAVVNYALRKRNVKVVPTGLEFGREGFIRYRDFR-FHPSLKH 334
>gi|167540287|ref|XP_001741734.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893617|gb|EDR21802.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 505
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 108/153 (70%), Gaps = 19/153 (12%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+E RP+TIR NTLK+RRR+LAQ L+NRGVN+D I +WSK GLV+Y+S VPIGA
Sbjct: 212 VDFMEANEAPRPVTIRVNTLKSRRRELAQKLINRGVNVDMI-EWSKSGLVVYDSQVPIGA 270
Query: 61 TPEYLGGHYILQGASKYWIC----APHRAAKL-------------AAALMKNTGVLFAND 103
TPEYL G YILQ +S W+ AP K+ AALMK+TG+L AND
Sbjct: 271 TPEYLAGQYILQSSSS-WVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGILVAND 329
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+SK+R KA++GN HRLG+ N+++T DG ++ K
Sbjct: 330 ISKDRLKAVIGNVHRLGITNTIITNYDGHEFPK 362
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%), Gaps = 2/37 (5%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLD--FGTEGFVNYRQ 172
EENEAV++YAL+KR+VK+VP L G +G+VN+RQ
Sbjct: 435 EENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ 471
>gi|22328952|ref|NP_194390.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana]
gi|22136852|gb|AAM91770.1| unknown protein [Arabidopsis thaliana]
gi|332659825|gb|AEE85225.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
Length = 671
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 100/152 (65%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E +RP +IRTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGL++Y+S VPIGA
Sbjct: 256 MELIEAFEKKRPTSIRTNTLKTRRRDLADILLNRGVNLDPLSKWSKVGLIVYDSQVPIGA 315
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + AP AALMKNTG+++AN++
Sbjct: 316 TPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMKNTGIIYANEM 375
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N++V DGR+ K
Sbjct: 376 KVPRLKSLSANLHRMGVTNTIVCNYDGRELTK 407
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+ RDVKLVP GLDFG GF ++R+++ + P + EK R P
Sbjct: 483 ENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFREHR-FHPSL-EKTRRFYP 531
>gi|350633373|gb|EHA21738.1| hypothetical protein ASPNIDRAFT_210766 [Aspergillus niger ATCC
1015]
Length = 681
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 99/148 (66%), Gaps = 16/148 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 284 FAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 343
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+Q AS + AP +ALM+NTG + AND
Sbjct: 344 TPEYLAGHYIIQAASSFLPVMALAPQPNERVLDMASAPGGKTTYISALMRNTGCVIANDA 403
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
SK R+K ++GN HRLG N++VT +D R
Sbjct: 404 SKPRAKGLIGNIHRLGCKNTIVTNMDAR 431
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VKLV TGL DFG+ G +Y K + P+M
Sbjct: 509 EENEAVVQYVLRKRPNVKLVDTGLGDFGSPGMTSY-MGKHFDPKM 552
>gi|327355493|gb|EGE84350.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ATCC
18188]
Length = 692
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S VP+GA
Sbjct: 274 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGA 333
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP R +AA ALM+NTG + AND
Sbjct: 334 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVLANDA 393
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N++V+ LD R+
Sbjct: 394 SKPRAKGLIGNIHRLGCKNTIVSNLDARE 422
>gi|295658139|ref|XP_002789632.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226283185|gb|EEH38751.1| Nop16-like protein NOP2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 677
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 101/149 (67%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 288 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESSVPLGA 347
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 348 TPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYISALMRNTGCVLANDA 407
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N++V+ LD R+
Sbjct: 408 SKLRAKGLIGNIHRLGCKNTIVSHLDARE 436
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNK 174
EENE+VV YALRKR +VK+V TGL +FGT GF +Y K
Sbjct: 513 EENESVVQYALRKRPNVKIVDTGLGNFGTPGFKSYMGKK 551
>gi|324510580|gb|ADY44425.1| Ribosomal RNA methyltransferase, partial [Ascaris suum]
Length = 583
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 106/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M FL++++ RP+T+RTN+LK RR +LA+ L+NRG+N+DP KW+KVGLV+Y+S P+GA
Sbjct: 314 MQFLDSNDQPRPVTVRTNSLKIRRGELAKMLINRGMNVDPAAKWTKVGLVVYDSQFPVGA 373
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QG S + +C AP AALMKNTGV+FAND
Sbjct: 374 TPEYLAGHYMIQGLSSFLPVMALAPQPNELVLDMCAAPGGKTSHIAALMKNTGVVFANDS 433
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ R +AI+GN HR+GV N+VV+ LDG+ + K
Sbjct: 434 NMVRCRAIIGNLHRMGVNNAVVSNLDGKVFAK 465
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENEAVV+Y LRKRD KLVPTGL+ G EGF +R+
Sbjct: 539 EENEAVVDYVLRKRDCKLVPTGLEIGVEGFTKFRE 573
>gi|297803436|ref|XP_002869602.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp.
lyrata]
gi|297315438|gb|EFH45861.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp.
lyrata]
Length = 650
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 100/152 (65%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E +RP +IRTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGL++Y+S VPIGA
Sbjct: 235 MELIEAFEKKRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLIVYDSQVPIGA 294
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + AP AALMKNTG+++AN++
Sbjct: 295 TPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMKNTGIIYANEM 354
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N++V DGR+ K
Sbjct: 355 KVPRLKSLSANLHRMGVTNTIVCNYDGRELPK 386
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+ RDVKLVP GLDFG GF ++ +++ + P + EK R P
Sbjct: 462 ENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFIEHR-FHPSL-EKTRRFYP 510
>gi|224061242|ref|XP_002300386.1| predicted protein [Populus trichocarpa]
gi|222847644|gb|EEE85191.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 91 MELIEAFEKPRPTCLRTNTLKTRRRDLANVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGA 150
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ GHY+LQ AS + AP ++ AALMKN+G+++AN++
Sbjct: 151 TPEYMAGHYMLQSASSFMPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIYANEI 210
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R +++ N HR+GV N++V DGR+ K
Sbjct: 211 KAQRLRSLTANLHRMGVTNTIVCNYDGRELPK 242
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEA V+YAL+KR+VKLVP GLDFG GFV +RQ++ + P + EK R P
Sbjct: 318 ENEAAVDYALKKRNVKLVPCGLDFGRPGFVRFRQHR-FHPSL-EKTRRFYP 366
>gi|356524384|ref|XP_003530809.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Glycine max]
Length = 614
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 99/152 (65%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 213 MELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 272
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEY+ G Y+LQ AS + AP AALMKNTG++FAN++
Sbjct: 273 TPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEM 332
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N+VV DG++ K
Sbjct: 333 KVPRLKSLTANLHRMGVSNTVVCNYDGKELPK 364
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENE+V++YAL+KRDVKLVP GLDFG GF +R+ + + P + EK R P
Sbjct: 440 ENESVIDYALKKRDVKLVPCGLDFGRPGFTKFREQR-FHPSL-EKTRRFYP 488
>gi|392576504|gb|EIW69635.1| hypothetical protein TREMEDRAFT_30413 [Tremella mesenterica DSM
1558]
Length = 678
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F EA+E+ RP+TIR NTL+TRRRDLAQ L NRGV L+PIGKWSKVGL ++ S VP+GA
Sbjct: 313 IAFFEANESPRPVTIRANTLRTRRRDLAQTLSNRGVVLEPIGKWSKVGLQVFESPVPVGA 372
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +ALM+NTG++FAND
Sbjct: 373 TPEYLAGHYMLQSASSFLPVIALAPQPEERILDMASAPGGKTTYISALMQNTGIVFANDS 432
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R+K++ N HRLG N VV D R++ K
Sbjct: 433 NKQRTKSLTANVHRLGCKNVVVCNYDAREFPK 464
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGF 167
+ENEAVV+YALRKR KLV TGL+FG EGF
Sbjct: 537 DENEAVVDYALRKRPHCKLVDTGLEFGVEGF 567
>gi|189190438|ref|XP_001931558.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973164|gb|EDU40663.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 739
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 98/142 (69%), Gaps = 16/142 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+ET RP+ IRTNTL+T RR+LAQ L+NRGV L+P+GKWSKVGL I+++ VP+GAT
Sbjct: 289 AFFEANETPRPIVIRTNTLRTHRRELAQTLINRGVQLEPVGKWSKVGLQIFDTQVPLGAT 348
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL GHYILQ AS + AP AALMKNTG +FAND +
Sbjct: 349 PEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDAN 408
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
K+R+K ++GN HRLG N +V+
Sbjct: 409 KDRAKGLIGNIHRLGARNVIVS 430
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL KR +VKLV TGL FG EGF Q K + P M+
Sbjct: 512 EENEQVVQYALNKRPNVKLVETGLTFGKEGFTKI-QGKIFHPSMK 555
>gi|268534138|ref|XP_002632199.1| C. briggsae CBR-NOL-1 protein [Caenorhabditis briggsae]
Length = 664
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA++ RP+TIR N+LK +RRDLA+ L+NRG+N+DP +W+KVGLV+Y+S VP+GA
Sbjct: 218 LEFLEANDNPRPVTIRANSLKVKRRDLAKNLINRGMNVDPAAEWTKVGLVVYDSQVPVGA 277
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QG + +C AP AALMKN+G LFAND
Sbjct: 278 TPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGTLFANDA 337
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
S +R +AI+GN HRLGV N+VV L G ++ K + N
Sbjct: 338 SFDRCRAIIGNLHRLGVNNAVVCNLGGEEFSKIKPN 373
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
EENEAVVN+ L +R +LVPTGL G +G+ +R
Sbjct: 443 EENEAVVNFLLERRHCELVPTGLAIGVDGYTRFR 476
>gi|357460225|ref|XP_003600394.1| hypothetical protein MTR_3g060700 [Medicago truncatula]
gi|355489442|gb|AES70645.1| hypothetical protein MTR_3g060700 [Medicago truncatula]
Length = 1069
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 637 MELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 696
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ G Y+LQ AS + AP ++ AALMKN+G++FAN++
Sbjct: 697 TPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEM 756
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N+VV+ DG++ K
Sbjct: 757 KVPRLKSLTANLHRMGVSNTVVSNYDGKELPK 788
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++Y L++RDVKLVP GLDFG GF +R+ + + P + +K R P
Sbjct: 864 ENEAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQR-FHPSL-DKTRRFYP 912
>gi|393220344|gb|EJD05830.1| NOL1/NOP2/sun family RNA met [Fomitiporia mediterranea MF3/22]
Length = 420
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F E++E RP+TIRTNTL+TRR+DLAQAL+ RGV+L+P+GKWS VGL ++ S+VP+GA
Sbjct: 56 IEFFESNELPRPVTIRTNTLRTRRKDLAQALIARGVSLEPLGKWSPVGLQVFESSVPLGA 115
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP + +ALM+NTGV+FAND
Sbjct: 116 TPEYLAGHYMLQAASSFLPVMALDPQPNERILDMASAPGGKSSYISALMQNTGVVFANDA 175
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 176 NKSRTKSLTANIHRLGCKNVVVCNYDGREFPK 207
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+ENEAVV+YALRKR V+L+ TGL FG +GF YR K + P ++
Sbjct: 281 DENEAVVDYALRKRPHVQLLETGLAFGRDGFTRYR-GKVFDPSVK 324
>gi|358401369|gb|EHK50675.1| hypothetical protein TRIATDRAFT_157738 [Trichoderma atroviride IMI
206040]
Length = 681
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E RP+ IRTNTL+T RRDLAQAL+NRGV L+P+GKWSKVGL I+ + VP+GA
Sbjct: 292 FAFFEANEMPRPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQIFEANVPLGA 351
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI+Q A+ + AP +A+M NTG++FAND
Sbjct: 352 TPEYLAGHYIIQAAASFLPVMALSPQPNERVLDMASAPGGKTTYCSAMMNNTGMVFANDP 411
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K+R+K ++GN RLGV N +V DGR++
Sbjct: 412 NKQRAKGLIGNVARLGVRNVIVCSYDGREF 441
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE+VV YAL +R +V+LV G+ FG EGF +Y K + P ++
Sbjct: 516 EENESVVAYALSRRPNVRLVDAGIPFGKEGFTSY-MGKRFHPSLK 559
>gi|341896868|gb|EGT52803.1| CBN-NOL-1 protein [Caenorhabditis brenneri]
Length = 687
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA++ RP+TIR N+LK +RRDLA+ L+NRG+N+DP W+KVGLV+Y+S VP+GA
Sbjct: 244 LEFLEANDNPRPVTIRANSLKVKRRDLAKNLINRGMNVDPAADWTKVGLVVYDSQVPVGA 303
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QG + +C AP AALMKN+G LFAND
Sbjct: 304 TPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGTLFANDA 363
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S +R +AI+GN HRLGV N+VV L G ++ K
Sbjct: 364 SFDRCRAIIGNLHRLGVNNAVVCNLGGEEFAK 395
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
EENEAVVN+ L +R +LVPTGL G +G+ +R
Sbjct: 469 EENEAVVNFLLERRHCELVPTGLSIGVDGYTRFR 502
>gi|330915499|ref|XP_003297055.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Pyrenophora teres f. teres
0-1]
gi|311330482|gb|EFQ94850.1| hypothetical protein PTT_07336 [Pyrenophora teres f. teres 0-1]
Length = 745
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 98/142 (69%), Gaps = 16/142 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA+ET RP+ IRTNTL+T RR+LAQ L+NRGV L+P+GKWSKVGL I+++ VP+GAT
Sbjct: 289 AFFEANETPRPIVIRTNTLRTHRRELAQTLINRGVQLEPVGKWSKVGLQIFDTQVPLGAT 348
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL GHYILQ AS + AP AALMKNTG +FAND +
Sbjct: 349 PEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGCIFANDAN 408
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
K+R+K ++GN HRLG N +V+
Sbjct: 409 KDRAKGLIGNIHRLGARNVIVS 430
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL KR +VKLV TGL FG EGF Q K + P M+
Sbjct: 512 EENEQVVQYALNKRPNVKLVETGLTFGKEGFTKI-QGKIFHPSMK 555
>gi|401888795|gb|EJT52744.1| nucleolar RNA m(5)C methyltransferase, Nop2p [Trichosporon asahii
var. asahii CBS 2479]
Length = 669
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F E++E+ RP+TIR NTL+TRRRDLAQAL+NRGV L+PIGKWSKVGL ++ S VP+GA
Sbjct: 289 LAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPVGA 348
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +ALM+NTG +FAND
Sbjct: 349 TPEYLAGHYMLQAASSFLPVIALAPQPGERVLDMASAPGGKTTYLSALMQNTGTVFANDS 408
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+K++ N HR+G N VV D R++
Sbjct: 409 NKARTKSLTANVHRMGCKNVVVCNYDAREF 438
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+E+E+VV+YALRKR VKLV TGL+FG GF ++ + K + P +
Sbjct: 513 DEDESVVDYALRKRPHVKLVETGLEFGVPGFTSF-EGKHFHPSL 555
>gi|406697452|gb|EKD00711.1| nucleolar RNA m(5)C methyltransferase, Nop2p [Trichosporon asahii
var. asahii CBS 8904]
Length = 669
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F E++E+ RP+TIR NTL+TRRRDLAQAL+NRGV L+PIGKWSKVGL ++ S VP+GA
Sbjct: 289 LAFFESNESPRPVTIRANTLRTRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPVGA 348
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +ALM+NTG +FAND
Sbjct: 349 TPEYLAGHYMLQAASSFLPVIALAPQPGERVLDMASAPGGKTTYLSALMQNTGTVFANDS 408
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+K++ N HR+G N VV D R++
Sbjct: 409 NKARTKSLTANVHRMGCKNVVVCNYDAREF 438
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+E+E+VV+YALRKR VKLV TGL+FG GF ++ + K + P +
Sbjct: 513 DEDESVVDYALRKRPHVKLVETGLEFGVPGFTSF-EGKHFHPSL 555
>gi|154277144|ref|XP_001539413.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
gi|150412998|gb|EDN08381.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
Length = 1980
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL I+ S +P+GA
Sbjct: 1644 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQIFESAIPLGA 1703
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 1704 TPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVIANDA 1763
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N++++ LD RQ
Sbjct: 1764 SKPRAKGLIGNIHRLGCKNTIISNLDARQ 1792
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNK 174
EENEAVV YALR R +VK+V TGL +FGT GF +Y K
Sbjct: 1869 EENEAVVQYALRNRPNVKIVDTGLGNFGTPGFKSYMGKK 1907
>gi|449019801|dbj|BAM83203.1| RNA cytosine methyltransferase [Cyanidioschyzon merolae strain 10D]
Length = 677
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F+EA+E+ RPL IRTNTLK RR+ LA AL+ RG+N+DP+G WS VGL +Y S VP+GA
Sbjct: 286 LAFIEANESPRPLVIRTNTLKVRRQRLAMALIARGMNVDPVGSWSPVGLTVYQSEVPVGA 345
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+Y++Q A+ + AP A A LMK TG+LFANDV
Sbjct: 346 TPEYLAGYYMIQAAASFLPVMALAPREHERILDMAAAPGGKATYIAQLMKGTGLLFANDV 405
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
++ER KA+V N RLGV N+VV LDGR K
Sbjct: 406 NRERCKALVANLQRLGVPNAVVMSLDGRTLSK 437
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 138 EENEAVVNYALRK--RDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
+ENE VV+Y LRK VK+V TG+ FG GF+ +R+ K + P + E
Sbjct: 521 DENEEVVDYVLRKLGSRVKVVSTGIPFGLPGFIRFRE-KRFHPSLAE 566
>gi|308456988|ref|XP_003090900.1| CRE-NOL-1 protein [Caenorhabditis remanei]
gi|308260037|gb|EFP03990.1| CRE-NOL-1 protein [Caenorhabditis remanei]
Length = 677
Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 104/156 (66%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA++ RP+TIR N+LK +RRDLA+ L+NRG+N+DP W+KVGLV+Y+S VP+GA
Sbjct: 230 LEFLEANDNPRPVTIRANSLKVKRRDLARNLINRGMNVDPAADWTKVGLVVYDSQVPVGA 289
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QG + +C AP AALMKN+G LFAND
Sbjct: 290 TPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGTLFANDA 349
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
S +R +AI+GN HRLGV N+VV L G ++ K N
Sbjct: 350 SFDRCRAIIGNLHRLGVNNAVVCNLGGEEFAKIRPN 385
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENEAVVN+ L +R +LVPTGL G +G+ +R
Sbjct: 455 EENEAVVNFLLERRHCELVPTGLSIGVDGYTRFRD 489
>gi|226290863|gb|EEH46291.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb18]
Length = 660
Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 99/147 (67%), Gaps = 16/147 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 288 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESSVPLGA 347
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG + AND
Sbjct: 348 TPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYISALMRNTGCVLANDA 407
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDG 131
SK R+K ++GN HRLG N++V+ LD
Sbjct: 408 SKHRAKGLIGNIHRLGCKNTIVSHLDA 434
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNK 174
EENE VV YALRKR +VK+V TGL +FGT GF +Y K
Sbjct: 513 EENEGVVQYALRKRPNVKIVDTGLGNFGTPGFKSYMGKK 551
>gi|17536757|ref|NP_493742.1| Protein NOL-1 [Caenorhabditis elegans]
gi|351050956|emb|CCD73642.1| Protein NOL-1 [Caenorhabditis elegans]
Length = 664
Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA++ RP+TIR N+LK +RRDLA+ L+NRG+N+DP W+KVGLV+Y+S VP+GA
Sbjct: 219 LEFLEANDNPRPVTIRANSLKVKRRDLAKNLINRGMNVDPAADWTKVGLVVYDSQVPVGA 278
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++QG + +C AP AALMKN+GVLFAND
Sbjct: 279 TPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGVLFANDA 338
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ R +AI+GN HRLGV N+VV L G ++ K
Sbjct: 339 NFTRCRAIIGNLHRLGVNNTVVCNLGGEEFSK 370
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
EENEAVVN+ L +R +LVPTGL G +G+ +R
Sbjct: 444 EENEAVVNFLLERRHCELVPTGLSIGVDGYTRFR 477
>gi|397575761|gb|EJK49876.1| hypothetical protein THAOC_31203 [Thalassiosira oceanica]
Length = 716
Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 97/151 (64%), Gaps = 16/151 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEAS+ RPL +R NTLK RR+DLA AL+ RGV LDP+ WSKVGL IY STVPIGA
Sbjct: 308 LEFLEASDKSRPLVVRVNTLKARRKDLAAALMKRGVRLDPLAPWSKVGLKIYESTVPIGA 367
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
TPEYL GHY+LQ A+ AP R ++AA LM+N GV+ AND+
Sbjct: 368 TPEYLAGHYMLQSAASMCPVMALAPQPGDRVMDMSAAPGGKTSYIAQLMRNKGVVIANDL 427
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
ER KA V N HRLGV N V C DGR+ G
Sbjct: 428 KPERQKATVANLHRLGVRNVVTCCYDGRKLG 458
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFG 163
ENE VVNY L KRDVK+V TGLDFG
Sbjct: 535 ENEEVVNYLLSKRDVKIVETGLDFG 559
>gi|378727985|gb|EHY54444.1| ribosomal RNA small subunit methyltransferase F [Exophiala
dermatitidis NIH/UT8656]
Length = 717
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 101/149 (67%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+ET RP+ +RTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ + VP+GA
Sbjct: 294 FAFFEANETPRPVVLRTNTLRTNRRTLAQALINRGVVLEPVGKWSKVGLQVFEAPVPLGA 353
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTGV+FAND
Sbjct: 354 TPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYISALMRNTGVVFANDA 413
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+K+R+K ++GN HRLG N++V D ++
Sbjct: 414 NKQRAKGLIGNIHRLGCKNTIVCNYDAQK 442
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENEAVV Y LRKR +VK+V TGL +FG+EGF +Y NK + +M
Sbjct: 519 EENEAVVQYVLRKRPNVKIVDTGLGNFGSEGFKSY-MNKKFDDKM 562
>gi|449301057|gb|EMC97068.1| hypothetical protein BAUCODRAFT_68561 [Baudoinia compniacensis UAMH
10762]
Length = 663
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 16/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F +A+ET RP+ IRTNTL+T RR+LA AL+NRGV L+P+GKWSKVGL I+ S VP+GA
Sbjct: 282 LAFFDANETPRPMVIRTNTLRTHRRNLAHALINRGVTLEPVGKWSKVGLQIFESQVPLGA 341
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G YILQ AS + AP AALM+NTG +FAND
Sbjct: 342 TPEYLAGQYILQAASSFLPVMALAPQEHERCLDMAAAPGGKTTHMAALMRNTGCIFANDA 401
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
+K R+KA++GN HR+GV N++V
Sbjct: 402 NKSRAKALIGNIHRMGVKNTIV 423
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENE VV Y L KR +V+LV TGL FG EGFV Y K + P M+E
Sbjct: 506 EENEQVVQYVLNKRPNVRLVSTGLVFGREGFVKY-MGKRFHPSMKE 550
>gi|147778971|emb|CAN71575.1| hypothetical protein VITISV_037193 [Vitis vinifera]
Length = 741
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 228 MELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGA 287
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ G Y+LQ AS + AP ++ AALMKN+G++FAN++
Sbjct: 288 TPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGMIFANEM 347
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ R K++ N HR+GV N+VV DG++ K
Sbjct: 348 KEPRLKSLTANLHRMGVTNTVVCNYDGKELPK 379
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KR+VKLVP GLDFG GF +R+++ + + EK R P
Sbjct: 455 ENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFH--QSLEKTRRFYP 503
>gi|359494318|ref|XP_002266863.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Vitis vinifera]
Length = 633
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 226 MELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGA 285
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ G Y+LQ AS + AP ++ AALMKN G++FAN++
Sbjct: 286 TPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNGGMIFANEM 345
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ R K++ N HR+GV N+VV DG++ K
Sbjct: 346 KEPRLKSLTANLHRMGVTNTVVCNYDGKELPK 377
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYR 177
ENEAV++YAL+KR+VKLVP GLDFG GF +R+++ ++
Sbjct: 453 ENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQ 491
>gi|298712110|emb|CBJ32991.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 605
Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 98/149 (65%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEAS+ RPL IR NTLKTRR+DLA+AL+ RGV+L+P+ KWSKVGL I S +PIGA
Sbjct: 372 VEFLEASDKPRPLVIRANTLKTRRKDLAEALIKRGVSLEPVAKWSKVGLKITESQIPIGA 431
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ A+ AP + A LM+NTGV+ AND+
Sbjct: 432 TPEYLAGHYMLQSAASMCPVMALAPQQGERVLDMSAAPGGKSTYIAQLMRNTGVVIANDL 491
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+R +A V N HRLGV N++V C DGR+
Sbjct: 492 RPQRQRATVANLHRLGVRNALVCCHDGRK 520
>gi|255563570|ref|XP_002522787.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus
communis]
gi|223538025|gb|EEF39638.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus
communis]
Length = 624
Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 223 IELIEACEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGA 282
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDV 104
TPEY+ G Y+LQ A+ + AP ++ AALMKN+G+++AN++
Sbjct: 283 TPEYMAGFYMLQSANSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIYANEI 342
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K++ N HR+GV N++V DGR+ K
Sbjct: 343 KVPRLKSLTANLHRMGVTNTIVCNYDGRELIK 374
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KRDVKLVP GLDFG GF+ +R+++ + P + EK R P
Sbjct: 450 ENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREHR-FHPSL-EKTRRFYP 498
>gi|212541847|ref|XP_002151078.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Talaromyces marneffei ATCC
18224]
gi|210065985|gb|EEA20078.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
marneffei ATCC 18224]
Length = 764
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 98/149 (65%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E RP+ IRTNTL+T RR LAQAL+NRGV L P+GKWSKVGL ++ S VP+GA
Sbjct: 310 FAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSKVGLQVFESAVPLGA 369
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG++ AND
Sbjct: 370 TPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYISALMRNTGIVVANDA 429
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK R+K ++GN HRLG N++V +G++
Sbjct: 430 SKVRTKGLIGNIHRLGCKNTIVCNYNGQE 458
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNK 174
EENE VV Y LRKR +VK+V TGL FG+EGF +Y K
Sbjct: 535 EENEQVVQYVLRKRPNVKIVDTGLGSFGSEGFTSYMGKK 573
>gi|225679156|gb|EEH17440.1| Yna1p [Paracoccidioides brasiliensis Pb03]
Length = 664
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 96/136 (70%), Gaps = 3/136 (2%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E+ RP+ IRTNTL+T RR LAQAL+NRGV L+P+GKWSKVGL ++ S+VP+GA
Sbjct: 288 FAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESSVPLGA 347
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFH 117
TPEYL GHYILQ AS + AP ++ G + AND SK R+K ++GN H
Sbjct: 348 TPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGCVLANDASKHRAKGLIGNIH 407
Query: 118 RLGVINSVVTCLDGRQ 133
RLG N++V+ LD R+
Sbjct: 408 RLGCKNTIVSHLDARE 423
>gi|224000816|ref|XP_002290080.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973502|gb|EED91832.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 494
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 96/152 (63%), Gaps = 18/152 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEAS+ RPL +R NTLK RR+DLA AL+ RGV LDP+ WSKVGL IY STVPIGA
Sbjct: 144 LEFLEASDKPRPLVVRVNTLKARRKDLAAALMKRGVRLDPLAPWSKVGLKIYESTVPIGA 203
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ A+ AP + LMKN GV+ AND+
Sbjct: 204 TPEYLAGHYMLQSAASMCPVMALGPQPGDRVLDMSAAPGGKTSYVSQLMKNKGVVIANDL 263
Query: 105 SKERSKAIVGNFHRLGVINSVVTCL-DGRQYG 135
ER KA V N HRLGV N VVTC+ DGR+ G
Sbjct: 264 KPERQKATVANLHRLGVRN-VVTCVYDGRKIG 294
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
ENE VVNY L KRDVKLV TGLDFG GF + ++K + P +
Sbjct: 371 ENEEVVNYLLSKRDVKLVETGLDFGKPGFTRF-EHKRFHPSL 411
>gi|399217017|emb|CCF73704.1| unnamed protein product [Babesia microti strain RI]
Length = 412
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 98/152 (64%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F E++ RPLTIRTNTLKT+RRDLAQ L++RG N+DPIG WSK+GLV+ + T+PIGA
Sbjct: 88 LEFFESTAKSRPLTIRTNTLKTKRRDLAQMLISRGANVDPIGDWSKIGLVVNDHTIPIGA 147
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYI Q A+ AP LM NTG+L+ANDV
Sbjct: 148 TPEYLAGHYIQQSAASLIPVMALDPMPDEKILDMSAAPGGKCTHIGQLMNNTGILYANDV 207
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R ++V N HR+G+ N++V DGR+ K
Sbjct: 208 NKDRCTSLVANIHRMGLTNTIVINYDGRELVK 239
>gi|403222159|dbj|BAM40291.1| nucleolar protein [Theileria orientalis strain Shintoku]
Length = 515
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 99/147 (67%), Gaps = 16/147 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E P+TIRTNTLKT+R++LA AL+NRG N+DPIG W++ GLV+++S VPIGA
Sbjct: 127 IQFFEANEQPLPVTIRTNTLKTKRKELAVALINRGANVDPIGDWTREGLVVHSSKVPIGA 186
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYLGGHY+LQ AS +C AP A M NTG+LFAND
Sbjct: 187 TPEYLGGHYMLQSASSLIPVLALGPKQNEKVLDMCAAPGGKTTHIAQFMNNTGILFANDA 246
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDG 131
+KER K++V N HR+G+ N++V+ G
Sbjct: 247 NKERCKSLVSNIHRMGIFNTIVSNYSG 273
>gi|242770399|ref|XP_002341972.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Talaromyces stipitatus ATCC
10500]
gi|218725168|gb|EED24585.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
stipitatus ATCC 10500]
Length = 770
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 94/142 (66%), Gaps = 16/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+F EA+E RP+ IRTNTL+T RR LAQAL+NRGV L P+GKWSKVGL ++ S VP+GA
Sbjct: 312 FAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSKVGLQVFESAVPLGA 371
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP +ALM+NTG++ AND
Sbjct: 372 TPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYISALMRNTGIVVANDA 431
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
SK R+K ++GN HRLG N++V
Sbjct: 432 SKARTKGLIGNIHRLGCKNTIV 453
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNK 174
EENE VV Y LRKR +VK+V TGL FG+EGF +Y K
Sbjct: 537 EENEQVVQYVLRKRPNVKIVDTGLGSFGSEGFTSYMGKK 575
>gi|84994868|ref|XP_952156.1| nucleolar protein [Theileria annulata strain Ankara]
gi|65302317|emb|CAI74424.1| nucleolar protein, putative [Theileria annulata]
Length = 463
Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 99/152 (65%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F +A+E PLTIRTNTLKT+R+DLA L+NRG N+DPIG W+K GLV+++S VPIGA
Sbjct: 176 IQFFDANEQPLPLTIRTNTLKTKRKDLAVNLINRGANVDPIGDWTKEGLVVHSSKVPIGA 235
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS +C AP LM NTG+LFAND
Sbjct: 236 TPEYLAGHYILQSASSLIPVLSLSPKPNEMILDMCAAPGGKTTHIGQLMNNTGILFANDS 295
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R K++V N HRLG++NS+V G + K
Sbjct: 296 NKQRCKSLVSNIHRLGILNSIVCNYKGEELLK 327
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENE V++Y L+K ++KL+P GL+ G+ N+R K + P + + R P
Sbjct: 396 EENEQVLHYCLKKFNIKLLPLGLEIGSPAISNFR-GKKFHPSISKFARRFYP 446
>gi|430814129|emb|CCJ28594.1| unnamed protein product [Pneumocystis jirovecii]
Length = 601
Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 80/152 (52%), Positives = 100/152 (65%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKT RRDL AL+NRG+NL+ I KWSKVG+ I+ S VPIGA
Sbjct: 249 IEFFEANEVPRPVTIRTNTLKTTRRDLMNALINRGMNLEAIEKWSKVGIQIFESQVPIGA 308
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y++Q AS + AP AAL KNTGV+FAND
Sbjct: 309 TPEYLSGKYMIQAASSFLPVMALSPQINERILDISAAPGGKTAYIAALQKNTGVIFANDS 368
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
SK+R K++V N HRLG+ N++V DGR++ K
Sbjct: 369 SKDRIKSLVANIHRLGIKNTIVCNHDGREFPK 400
Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENE V++YAL+KR ++KLV TGL FG +GF +R
Sbjct: 473 DENEMVIDYALKKRPNIKLVDTGLSFGIDGFTRFR 507
>gi|429327745|gb|AFZ79505.1| NOL1/NOP2/sun RNA methylase family member protein [Babesia equi]
Length = 487
Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 101/147 (68%), Gaps = 16/147 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E PLTIRTNTLKTRR++LA +L+NRG N+DP G W+K GLV+++S VPIGA
Sbjct: 148 IQFFEANEQPLPLTIRTNTLKTRRKELAVSLINRGANVDPTGDWTKEGLVVHSSKVPIGA 207
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAK---LAAA----------LMKNTGVLFANDV 104
TPEYL GHY+LQ AS AP K +AAA +M NTG+++AND
Sbjct: 208 TPEYLAGHYMLQSASSLIPVLALAPKEGEKVLDIAAAPGGKTTHIGQIMNNTGLIYANDF 267
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDG 131
+K+R KA+V N HRLGV N++VT DG
Sbjct: 268 NKDRCKALVANIHRLGVTNTIVTNYDG 294
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENE VVNYALR R+VKLVP GLD G+ F +R K + P + R P
Sbjct: 372 EENEEVVNYALRMRNVKLVPLGLDIGSPAFSRFRGRK-FHPSIAAHARRFYP 422
>gi|323449480|gb|EGB05368.1| hypothetical protein AURANDRAFT_59367 [Aureococcus anophagefferens]
Length = 373
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 96/150 (64%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F++A++ RP+ IRTNTLKTRR+DLAQ L+ RGV+L+P+ WSKV L I S+VP+GA
Sbjct: 73 VEFMDANDKPRPVVIRTNTLKTRRKDLAQTLIKRGVHLEPMAAWSKVALKITESSVPVGA 132
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ A+ AP + A LMKN+G L ND+
Sbjct: 133 TPEYLAGHYMLQSAASQCPVLALGPEPGERVLELAAAPGGKSSYCAQLMKNSGTLVCNDL 192
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
KER KA V N HRLGV N+VV C DGR +
Sbjct: 193 KKERHKATVANLHRLGVSNAVVCCHDGRAF 222
>gi|71030964|ref|XP_765124.1| nuclear protein [Theileria parva strain Muguga]
gi|68352080|gb|EAN32841.1| nuclear protein, putative [Theileria parva]
Length = 428
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 98/149 (65%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F +A+E PLTIRTNTLKT+R+DLA +L+NRG N+DPIG W+K GLV+++S VPIGA
Sbjct: 127 IQFFDANEQPLPLTIRTNTLKTKRKDLAVSLINRGANVDPIGDWTKEGLVVHSSKVPIGA 186
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS +C AP LM NTG+LFAND
Sbjct: 187 TPEYLAGHYILQSASSLIPVLSLAPRPNELVLDMCAAPGGKTTHIGQLMNNTGILFANDS 246
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+K R K++V N HRLG++NS+V G +
Sbjct: 247 NKSRCKSLVSNIHRLGILNSIVCNYKGDE 275
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENE V++YA+RK +VKLVP GL+ GT F ++R K + P + + R P
Sbjct: 347 EENEQVIHYAIRKFNVKLVPLGLEIGTPAFSSFRGRK-FHPSIAKFARRFYP 397
>gi|440299348|gb|ELP91916.1| hypothetical protein EIN_399460 [Entamoeba invadens IP1]
Length = 521
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 17/152 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+EA+ET RP TIR NTLK++RRDLAQ L+ +GVN+D I +W K GLV+Y S +PIGA
Sbjct: 228 VDFMEANETPRPTTIRVNTLKSKRRDLAQKLIAKGVNVDMI-EWCKSGLVVYESQIPIGA 286
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
T EYL G YILQ +S + +C AP + AALMKNTG L ANDV
Sbjct: 287 TVEYLSGMYILQSSSSWAAVIALAPQPNERILDMCSAPGGKSTHIAALMKNTGTLVANDV 346
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
SK+R KA+VGN RLG+ N++VT DG ++ K
Sbjct: 347 SKDRLKAVVGNVQRLGITNTIVTSYDGHEFPK 378
>gi|342320777|gb|EGU12716.1| Nucleolar protein NOP2 [Rhodotorula glutinis ATCC 204091]
Length = 749
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 101/154 (65%), Gaps = 18/154 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPI-GKWSKVGLVIYN-STVPI 58
+ F AS+T RPLTIR NTLKTRRRDLAQAL+NRGVNL P+ G WSKVGL +++ S+VPI
Sbjct: 377 LEFFAASDTPRPLTIRVNTLKTRRRDLAQALINRGVNLQPLEGGWSKVGLQVFSGSSVPI 436
Query: 59 GATPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFAN 102
GATPEYL GHYILQ AS + AP +ALM NTG ++AN
Sbjct: 437 GATPEYLAGHYILQAASSFLPVMALDPQPHERCLDMSAAPGGKTTYMSALMGNTGEVWAN 496
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
D S+ R K + GN RLG N V+T +DGR++ K
Sbjct: 497 DSSRGRIKGLGGNVARLGCRNVVITNVDGREFPK 530
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
EENEAVV+YALRKR VKLV TGL FG GF +Y+
Sbjct: 603 EENEAVVSYALRKRPHVKLVDTGLPFGKPGFKSYK 637
>gi|242066150|ref|XP_002454364.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor]
gi|241934195|gb|EES07340.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor]
Length = 640
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LEA E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 193 VELLEAFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 252
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 253 TTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 312
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V+ DG++ K
Sbjct: 313 NEKRLHGLLGNIHRMGVTNTIVSNYDGKELPK 344
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAV++YAL+KR+VKLVP GLDFG GF+ YR+++
Sbjct: 420 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHR 455
>gi|422294853|gb|EKU22153.1| ribosomal rna methyltransferase nop2 [Nannochloropsis gaditana
CCMP526]
Length = 753
Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 96/150 (64%), Gaps = 17/150 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPI-GKWSKVGLVIYNSTVPIG 59
+ F+ A++ RPL +R NTLKTRR+DLAQAL+ RGV+L+P+ G WSKV L I +S VP+G
Sbjct: 274 VEFMAANDRPRPLVVRANTLKTRRKDLAQALLKRGVSLEPLAGGWSKVALKIIDSQVPVG 333
Query: 60 ATPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFAND 103
ATPEYL GHYILQ AS AP A A LMKNTG+L AND
Sbjct: 334 ATPEYLAGHYILQSASSMTPVMALAPQPHERVLDLSAAPGGKASYCAQLMKNTGLLVAND 393
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ ER KA + N HRLGV N+VV DGR+
Sbjct: 394 LKSERQKATIANLHRLGVRNAVVCSYDGRR 423
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQNKSYRPEM 180
EENE VV+Y LR R +V++VPTGL DFG GF +++ + P +
Sbjct: 499 EENELVVDYILRARPNVRVVPTGLGDFGRPGFTRVAEHR-FHPSL 542
>gi|398019893|ref|XP_003863110.1| nucleolar protein, putative [Leishmania donovani]
gi|322501342|emb|CBZ36420.1| nucleolar protein, putative [Leishmania donovani]
Length = 628
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 96/150 (64%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP TIR NTLK +RRDL QALV RG+N++P+ KWSKVGL ++ S VPI
Sbjct: 250 VDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAG 309
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A+ + AP R ++AA LMKNTGVLFANDV
Sbjct: 310 TIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGGKTTYIAQLMKNTGVLFANDV 369
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
S+ R K++ N RLGV N +VT DG Y
Sbjct: 370 SEPRCKSLNANLQRLGVTNCIVTNYDGTGY 399
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
EE+EA+V++ALR+RDV++V GL FG GF YR ++ +
Sbjct: 470 EEDEAIVDFALRRRDVQVVEMGLPFGRPGFTKYRHHRYH 508
>gi|146094454|ref|XP_001467280.1| putative nucleolar protein [Leishmania infantum JPCM5]
gi|134071645|emb|CAM70335.1| putative nucleolar protein [Leishmania infantum JPCM5]
Length = 628
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 96/150 (64%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP TIR NTLK +RRDL QALV RG+N++P+ KWSKVGL ++ S VPI
Sbjct: 250 VDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAG 309
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A+ + AP R ++AA LMKNTGVLFANDV
Sbjct: 310 TIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGGKTTYIAQLMKNTGVLFANDV 369
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
S+ R K++ N RLGV N +VT DG Y
Sbjct: 370 SEPRCKSLNANLQRLGVTNCIVTNYDGTGY 399
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
EE+EA+V++ALR+RDV++V GL FG GF YR ++ +
Sbjct: 470 EEDEAIVDFALRRRDVQVVEMGLPFGRPGFTKYRHHRYH 508
>gi|115480547|ref|NP_001063867.1| Os09g0551300 [Oryza sativa Japonica Group]
gi|50726314|dbj|BAD33889.1| putative nucleolar protein [Oryza sativa Japonica Group]
gi|113632100|dbj|BAF25781.1| Os09g0551300 [Oryza sativa Japonica Group]
gi|218202587|gb|EEC85014.1| hypothetical protein OsI_32305 [Oryza sativa Indica Group]
Length = 699
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LE+ E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 255 VELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 314
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 315 TVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 374
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V DG++ K
Sbjct: 375 NEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 406
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAV++YAL+KR+VKLVP GLDFG GF+ +R+++
Sbjct: 482 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRFREHR 517
>gi|218191489|gb|EEC73916.1| hypothetical protein OsI_08757 [Oryza sativa Indica Group]
Length = 695
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LE+ E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 250 VELLESFEKKPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 309
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 310 TVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 369
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V DG++ K
Sbjct: 370 NEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 401
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAVV+YAL+KR+VKLVP GLDFG GF+ +R+++
Sbjct: 477 ENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREHR 512
>gi|401426108|ref|XP_003877538.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493784|emb|CBZ29073.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 625
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 96/150 (64%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP TIR NTLK +RRDL QALV RG+N++P+ KWSKVGL ++ S VPI
Sbjct: 247 VDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAG 306
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A+ + AP R ++AA LMKNTGVLFANDV
Sbjct: 307 TIEYLAGHYMLQAAASFLPVMALAPQENDRVLDMSAAPGGKTTYIAQLMKNTGVLFANDV 366
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
S+ R K++ N RLGV N +VT DG Y
Sbjct: 367 SEPRCKSLNANLQRLGVTNCIVTNYDGTGY 396
>gi|222642043|gb|EEE70175.1| hypothetical protein OsJ_30252 [Oryza sativa Japonica Group]
Length = 688
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LE+ E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 255 VELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 314
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 315 TVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 374
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V DG++ K
Sbjct: 375 NEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 406
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAV++YAL+KR+VKLVP GLDFG GF+ +R+++
Sbjct: 482 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRFREHR 517
>gi|212275840|ref|NP_001130579.1| uncharacterized protein LOC100191678 [Zea mays]
gi|194689536|gb|ACF78852.1| unknown [Zea mays]
gi|413923706|gb|AFW63638.1| hypothetical protein ZEAMMB73_244854 [Zea mays]
Length = 718
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LEA E + P +RTNTLK+RRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 256 VELLEAFEKRPPECLRTNTLKSRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 315
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 316 TTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 375
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N+++ DG++ K
Sbjct: 376 NEKRLHGLMGNIHRMGVTNTIICNYDGKELPK 407
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAV++YAL+KR+VKLVP GLDFG GF+ YR+++
Sbjct: 483 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHR 518
>gi|413923705|gb|AFW63637.1| hypothetical protein ZEAMMB73_244854 [Zea mays]
Length = 619
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LEA E + P +RTNTLK+RRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 157 VELLEAFEKRPPECLRTNTLKSRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 216
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 217 TTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 276
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N+++ DG++ K
Sbjct: 277 NEKRLHGLMGNIHRMGVTNTIICNYDGKELPK 308
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
ENEAV++YAL+KR+VKLVP GLDFG GF+ YR+++ +
Sbjct: 384 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFH 421
>gi|45735882|dbj|BAD12915.1| putative proliferating cell nuclear protein P120 [Oryza sativa
Japonica Group]
gi|45736012|dbj|BAD13040.1| putative proliferating cell nuclear protein P120 [Oryza sativa
Japonica Group]
Length = 682
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LE+ E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 250 VELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 309
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 310 TVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 369
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V DG++ K
Sbjct: 370 NEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 401
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAVV+YAL+KR+VKLVP GLDFG GF+ +R+++
Sbjct: 477 ENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREHR 512
>gi|222623587|gb|EEE57719.1| hypothetical protein OsJ_08204 [Oryza sativa Japonica Group]
Length = 713
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LE+ E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 250 VELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 309
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 310 TVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 369
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V DG++ K
Sbjct: 370 NEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 401
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAVV+YAL+KR+VKLVP GLDFG GF+ +R+++
Sbjct: 497 ENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREHR 532
>gi|340053400|emb|CCC47690.1| putative nucleolar protein [Trypanosoma vivax Y486]
Length = 552
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 99/156 (63%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA E RP TIR NT+K +RRDL QALV RG+N++P+ KWSKVGL ++ S VPI
Sbjct: 194 VEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAG 253
Query: 61 TPEYLGGHYILQGASKYWIC-----APH-RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A + PH R LAAA LMKNTGV+FANDV
Sbjct: 254 TVEYLAGHYMLQSAVSFLPVMALAPQPHERVLDLAAAPGGKTTYIAQLMKNTGVIFANDV 313
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
S+ R+K++ N RLGV N++VT DG Y + +N
Sbjct: 314 SEPRTKSLNANLQRLGVTNTIVTNYDGVGYERVMKN 349
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
EENEAVV++ LR R V +V TGL FG G YR ++ +
Sbjct: 414 EENEAVVDFVLRHRPVTVVDTGLPFGRPGLTKYRHHRFH 452
>gi|357143629|ref|XP_003572989.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Brachypodium distachyon]
Length = 772
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +E+ E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 249 VELVESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISSGA 308
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN++
Sbjct: 309 TVEYMAGHYMKQGASSFLPVIALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEL 368
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V DG++ K
Sbjct: 369 NEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 400
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
ENEAV++YAL+KRDVKLVP GLDFG GF+ +R+++
Sbjct: 476 ENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREHR 511
>gi|342180762|emb|CCC90238.1| putative nucleolar protein [Trypanosoma congolense IL3000]
Length = 568
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 96/152 (63%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP TIR NT+K +RRDL QALV RG+N++P+ KWSKVGL I+ S VPI
Sbjct: 211 IEFLEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEPLEKWSKVGLQIFESNVPISG 270
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A + AP R +AAA LMKNTGV+FAND+
Sbjct: 271 TVEYLAGHYMLQSAVSFLPVMALAPQPQERVLDMAAAPGGKTTYIAQLMKNTGVIFANDI 330
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K++ N RLGV NS+VT DG Y K
Sbjct: 331 SAPRIKSLNANLQRLGVTNSIVTNYDGVGYEK 362
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENEAVV++AL +RDV +V TGL FG G YR ++
Sbjct: 431 EENEAVVDFALHRRDVTIVETGLPFGRPGLAKYRHHR 467
>gi|157872965|ref|XP_001685003.1| putative nucleolar protein [Leishmania major strain Friedlin]
gi|68128074|emb|CAJ08197.1| putative nucleolar protein [Leishmania major strain Friedlin]
Length = 629
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 96/150 (64%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP TIR NTLK +RRDL QALV RG++++P+ KWSKVGL ++ S VPI
Sbjct: 251 VDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMSVEPLEKWSKVGLQVFESNVPIAG 310
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A+ + AP R ++AA LMKNTGVLFANDV
Sbjct: 311 TIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGGKTTYIAQLMKNTGVLFANDV 370
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
S+ R K++ N RLGV N +VT DG Y
Sbjct: 371 SEPRCKSLNANLQRLGVTNCIVTNYDGTGY 400
>gi|123446653|ref|XP_001312075.1| NOL1/NOP2/sun family RNA methylase containing protein [Trichomonas
vaginalis G3]
gi|121893909|gb|EAX99145.1| NOL1/NOP2/sun family putative RNA methylase containing protein
[Trichomonas vaginalis G3]
Length = 476
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 99/150 (66%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F++A+E QRP+ IRTNTL+TRR +L + L RGV L P+ KW+K+GL++Y+S VPIGA
Sbjct: 136 IDFIDANEHQRPVVIRTNTLRTRRNELERVLSERGVRLGPVDKWTKLGLIVYDSQVPIGA 195
Query: 61 TPEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++Q S + +C AP A LMKN GV+ AND+
Sbjct: 196 TPEYLSGHYMIQSPSSFLPVMALNPQPGMRTLDMCAAPGGKTTHMAQLMKNQGVIIANDI 255
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
++ R++A++ N HRLGV N++V DGR +
Sbjct: 256 NRTRAQALIANIHRLGVTNTIVVNYDGRAF 285
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFG-----TEGFVNYRQNKSYRPEMQ 181
EENEAVV+Y + R K++P+GLD EG VNY+ + P +Q
Sbjct: 357 EENEAVVDYLINNRKCKVIPSGLDSDFDQDLAEGIVNYK-GHHFHPSVQ 404
>gi|413938658|gb|AFW73209.1| hypothetical protein ZEAMMB73_133498, partial [Zea mays]
Length = 275
Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LEA E + P +RTNTLKTRRRDLA AL+ RG NLDPIGKWSKVGLV+Y+ST+ GA
Sbjct: 8 VELLEAFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGKWSKVGLVVYDSTISAGA 67
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
T EY+ GHY+ QGAS + AP R +AA ALMKNTG+++AN+
Sbjct: 68 TTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEF 127
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+++R ++GN HR+GV N++V DG++ K
Sbjct: 128 NEKRLHGLLGNIHRMGVTNTIVCNYDGKELPK 159
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
ENEAV++YAL+KR+VKLVP GLDFG GF+ YR+++ +
Sbjct: 235 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFH 272
>gi|449547463|gb|EMD38431.1| hypothetical protein CERSUDRAFT_113588 [Ceriporiopsis subvermispora
B]
Length = 708
Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 345 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 404
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AALM+NTGV+FAND
Sbjct: 405 TPEYLAGHYMLQAASSFLPVIALGPQPGERVLDMASAPGGKTTHMAALMQNTGVVFANDA 464
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 465 TKARTKSLTANVHRLGCKNVVVCSYDGREFPK 496
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENEAVV+YALRKR +VKLV TGL+FG GF YR
Sbjct: 569 DENEAVVDYALRKRPNVKLVDTGLEFGVPGFTKYR 603
>gi|261327715|emb|CBH10692.1| nucleolar protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 579
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 99/156 (63%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA E RP TIR NT+K +RRDL QALV RG+N++P+ KWSKVGL ++ S VPI
Sbjct: 224 VEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPISG 283
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A + AP R +AAA LMKNTGV+FANDV
Sbjct: 284 TVEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGGKTTYIAQLMKNTGVIFANDV 343
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
S+ R+K++ N RLGV N+VVT DG + K +N
Sbjct: 344 SEPRTKSLNANLQRLGVTNTVVTNYDGVGFEKVMKN 379
>gi|71408722|ref|XP_806747.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
gi|70870582|gb|EAN84896.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 538
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 98/156 (62%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA E RP TIR NTLK +RRDL QAL+ RG++++P+ KWSKVGL ++ S VPI
Sbjct: 182 VEFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEPLEKWSKVGLQVFESNVPIAG 241
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL G Y+LQ A + AP R +AAA LMKNTGVLFANDV
Sbjct: 242 TIEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTGVLFANDV 301
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
S+ R+KA+ N RLGV N+VVT DG Y K +N
Sbjct: 302 SEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKN 337
>gi|154342166|ref|XP_001567031.1| putative nucleolar protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064360|emb|CAM42450.1| putative nucleolar protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 625
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 95/150 (63%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA E RP TIR NTLK +RRDL QALV RG+N++P+ KWSKVGL ++ S VPI
Sbjct: 242 VDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPIAG 301
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL G Y+LQ A+ + AP R ++AA LMKNTGVLFANDV
Sbjct: 302 TIEYLAGQYMLQAAASFLPVMALAPQEHERVLDMSAAPGGKTTYIAQLMKNTGVLFANDV 361
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
S+ R K++ N RLGV N +VT DG Y
Sbjct: 362 SEPRCKSLNSNLQRLGVTNCIVTNYDGTGY 391
>gi|72388220|ref|XP_844534.1| nucleolar protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359769|gb|AAX80199.1| nucleolar protein, putative [Trypanosoma brucei]
gi|70801067|gb|AAZ10975.1| nucleolar protein, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 525
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 99/156 (63%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA E RP TIR NT+K +RRDL QALV RG+N++P+ KWSKVGL ++ S VPI
Sbjct: 170 VEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEPLEKWSKVGLQVFESNVPISG 229
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL GHY+LQ A + AP R +AAA LMKNTGV+FANDV
Sbjct: 230 TVEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGGKTTYIAQLMKNTGVIFANDV 289
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
S+ R+K++ N RLGV N+VVT DG + K +N
Sbjct: 290 SEPRTKSLNANLQRLGVTNTVVTNYDGVGFEKVMKN 325
>gi|156085270|ref|XP_001610117.1| nucleolar protein-like protein with NOL1/NOP2/sun family RNA
methylase domain [Babesia bovis T2Bo]
gi|154797369|gb|EDO06549.1| nucleolar protein-like protein with NOL1/NOP2/sun family putative
RNA methylase domain [Babesia bovis]
Length = 515
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 94/147 (63%), Gaps = 16/147 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E P+T+R NTLKTRR++LA AL+ RG N+DP+G WSK GLV+++S VPIGA
Sbjct: 127 IQFFEANERPLPMTLRVNTLKTRRKELAAALIARGANVDPVGDWSKEGLVVHSSQVPIGA 186
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY++Q A+ AP A +M N G+L+AND
Sbjct: 187 TPEYLAGHYMMQSAASLIPVLALSPKDGEKVLDIAAAPGGKTTHIAQMMNNGGILYANDF 246
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDG 131
+KER A+V N HRLG+ N++VT DG
Sbjct: 247 NKERCTALVANIHRLGITNTIVTNYDG 273
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENE V++YALR RDVKLVP G++ G+ ++R + + P + + R P
Sbjct: 351 EENEQVIDYALRMRDVKLVPLGVEAGSPALSSFR-GRHFHPSIGQHARRFYP 401
>gi|392566845|gb|EIW60020.1| NOL1/NOP2/sun family RNA met [Trametes versicolor FP-101664 SS1]
Length = 707
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 347 IEFFEANEIPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 406
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AALM+NTGV+FAND
Sbjct: 407 TPEYLAGHYMLQAASSFLPVIALGSQPGERVLDMASAPGGKTTHMAALMQNTGVVFANDA 466
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 467 NKARTKSLTANVHRLGCKNVVVCSYDGREFPK 498
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENEAVV+YALRKR VKLV TGL+FG GF +YR
Sbjct: 571 DENEAVVDYALRKRPHVKLVDTGLEFGRPGFTSYR 605
>gi|402225311|gb|EJU05372.1| NOL1/NOP2/sun family RNA met [Dacryopinax sp. DJM-731 SS1]
Length = 573
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F E++E RP+TIRTNTL+TRRR+LAQAL+NRGVNL+PIGKWSKVGL ++ S+VPIGA
Sbjct: 207 IEFFESNELPRPVTIRTNTLRTRRRELAQALINRGVNLEPIGKWSKVGLQVFESSVPIGA 266
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +ALM+NTGV+FAND
Sbjct: 267 TPEYLAGHYMLQAASSFLPVIALDPQPGERVLDMASAPGGKTTYISALMQNTGVVFANDA 326
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+KER+K + N HRLG N VV DGR++ K
Sbjct: 327 NKERTKGLTANVHRLGCRNVVVCNYDGREFPK 358
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENE+V+ YALRKR V+LV TGL+FG EGF +R K++ EM
Sbjct: 429 DENESVIAYALRKRPHVRLVDTGLEFGREGFKAFR-GKTFGEEM 471
>gi|409082406|gb|EKM82764.1| hypothetical protein AGABI1DRAFT_118201 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 551
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL I+ S+VP+GA
Sbjct: 202 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQIFESSVPVGA 261
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP A AAL++NTGV+FAND
Sbjct: 262 TPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGKATHIAALLQNTGVVFANDA 321
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 322 NKARTKSLTANVHRLGCKNVVVCSYDGREFPK 353
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +V LV TGL FG EGF YR K + P +
Sbjct: 426 DENEAVVDYALRKRPNVTLVDTGLPFGREGFTKYR-GKVFNPSI 468
>gi|254576911|ref|XP_002494442.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
gi|238937331|emb|CAR25509.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
Length = 617
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 102/150 (68%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQALVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 260 LEFFEANEISRPITIRTNTLRTRRRDLAQALVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 319
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G+YILQ AS + AP +ALMKNTG +FAND
Sbjct: 320 TPEYLAGNYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDA 379
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+K++V N HRLG N++V D R++
Sbjct: 380 NKSRTKSLVANIHRLGCTNTIVCNYDAREF 409
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+E VV+YALRKR ++KL+ TGL G EGF +YR K + P ++
Sbjct: 484 EEDEQVVDYALRKRPNIKLIETGLAIGKEGFASYR-GKKFHPSLK 527
>gi|407852470|gb|EKG05950.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 538
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 98/156 (62%), Gaps = 16/156 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA E RP TIR NTLK +RRDL QAL+ RG++++P+ KWSKVGL ++ S VPI
Sbjct: 182 VEFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEPLEKWSKVGLQVFESNVPIAG 241
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL G Y+LQ A + AP R +AAA LMKNTGVLFAND+
Sbjct: 242 TVEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTGVLFANDM 301
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
S+ R+KA+ N RLGV N+VVT DG Y K +N
Sbjct: 302 SEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKN 337
>gi|390598058|gb|EIN07457.1| NOL1/NOP2/sun family RNA met [Punctularia strigosozonata HHB-11173
SS5]
Length = 419
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 56 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 115
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AALM+NTG++FAND
Sbjct: 116 TPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGKTTHMAALMQNTGIIFANDA 175
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N +V DGR++ K
Sbjct: 176 TKARTKSLTANVHRLGCKNVIVCSYDGREFPK 207
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENEAVV+YAL+KR VKLV TGL+FG GF +R
Sbjct: 280 DENEAVVDYALKKRPHVKLVDTGLEFGVPGFTKFR 314
>gi|395333608|gb|EJF65985.1| NOL1/NOP2/sun family RNA met [Dichomitus squalens LYAD-421 SS1]
Length = 718
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 351 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 410
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AALM+NTGV+FAND
Sbjct: 411 TPEYLAGHYMLQAASSFLPVIALSPQPGERVLDMASAPGGKTTHMAALMQNTGVVFANDA 470
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R K++ N HRLG N VV DGR++ K
Sbjct: 471 NKARVKSLTANVHRLGCKNVVVCSYDGREFPK 502
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENEAVV+YALRKR +VKLV TGL+FG G+ +YR
Sbjct: 575 DENEAVVDYALRKRPNVKLVDTGLEFGRPGYTSYR 609
>gi|219112587|ref|XP_002178045.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410930|gb|EEC50859.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 528
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 89/151 (58%), Gaps = 16/151 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F+ AS+ RPL IR NTLKTRR+DLA AL+ RGV LDP+ WSKVGL I S VPIGA
Sbjct: 233 VEFVNASDKTRPLVIRANTLKTRRKDLAAALMKRGVTLDPLANWSKVGLKIMESPVPIGA 292
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ A+ AP A LM+NTG + AND+
Sbjct: 293 TPEYLSGMYMLQSAASMCPVLALAPEPKERVLDMSAAPGGKTSYIAQLMRNTGTIVANDL 352
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
ER KA V N HRLGV N + DGR+ G
Sbjct: 353 KPERQKATVANMHRLGVKNVIACAHDGRKMG 383
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
ENE VVNYAL KRD+K+V TGLDFG GF Y Q + +
Sbjct: 459 ENEEVVNYALSKRDIKIVDTGLDFGKPGFTRYMQKRFH 496
>gi|241173797|ref|XP_002410886.1| nucleolar protein, putative [Ixodes scapularis]
gi|215495039|gb|EEC04680.1| nucleolar protein, putative [Ixodes scapularis]
Length = 420
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 87/122 (71%), Gaps = 16/122 (13%)
Query: 29 QALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYW---------- 78
QAL+NRGVNLDP+GKWSKVGL++YNS VP+GATPEYL GHY+LQGA+
Sbjct: 11 QALINRGVNLDPVGKWSKVGLIVYNSQVPVGATPEYLAGHYVLQGAASMLPVMALAPQEN 70
Query: 79 -----IC-APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132
+C AP AA+MKNTG+LFAN++ +ER KAI+GN HRLGV N++V DGR
Sbjct: 71 ERILDMCAAPGGKTTHIAAIMKNTGLLFANELHQERCKAIIGNLHRLGVNNTIVCSYDGR 130
Query: 133 QY 134
++
Sbjct: 131 KF 132
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
PEENE V++YAL+KR+VKLVPTGLDFG EG YR+
Sbjct: 206 PEENEWVIDYALKKRNVKLVPTGLDFGREGLTRYRE 241
>gi|426200239|gb|EKV50163.1| hypothetical protein AGABI2DRAFT_216573 [Agaricus bisporus var.
bisporus H97]
Length = 551
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VP+GA
Sbjct: 202 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPVGA 261
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP A AAL++NTGV+FAND
Sbjct: 262 TPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGKATHIAALLQNTGVVFANDA 321
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 322 NKARTKSLTANVHRLGCKNVVVCSYDGREFPK 353
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +V LV TGL FG EGF YR K + P +
Sbjct: 426 DENEAVVDYALRKRPNVTLVDTGLPFGREGFTKYR-GKVFNPSI 468
>gi|389748961|gb|EIM90138.1| NOL1/NOP2/sun family RNA met [Stereum hirsutum FP-91666 SS1]
Length = 699
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 337 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 396
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AAL++NTGV+FAND
Sbjct: 397 TPEYLAGHYMLQAASSFLPVIALSPQPQERVLDMASAPGGKTTHIAALLQNTGVVFANDA 456
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 457 NKARTKSLTANVHRLGCKNVVVCSYDGREFPK 488
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENEAVV+YALRKR +VKLV TGL+FG G+ YR
Sbjct: 561 DENEAVVDYALRKRPNVKLVDTGLEFGKPGYARYR 595
>gi|407404207|gb|EKF29767.1| nucleolar protein, putative [Trypanosoma cruzi marinkellei]
Length = 555
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 95/152 (62%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA E RP TIR NTLK +RRDL QAL+ RG++++P+ KWSKVGL ++ S VPI
Sbjct: 197 VEFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEPLEKWSKVGLQVFESNVPIAG 256
Query: 61 TPEYLGGHYILQGASKY---WICAPH---RAAKLAAA----------LMKNTGVLFANDV 104
T EYL G Y+LQ A + AP R +AAA LMKNTG LFANDV
Sbjct: 257 TIEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTGALFANDV 316
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S+ R+KA+ N RLGV N+VVT DG Y K
Sbjct: 317 SEPRTKALNANLQRLGVTNTVVTNYDGVGYNK 348
>gi|302828600|ref|XP_002945867.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
nagariensis]
gi|300268682|gb|EFJ52862.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
nagariensis]
Length = 829
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ +EA+E RP+T+RTNTL+TRRR+LA AL+ RGV+LDPIG WSKVGLV+Y S VPIGA
Sbjct: 244 LELMEANEVPRPITLRTNTLRTRRRELAAALIQRGVSLDPIGPWSKVGLVVYESKVPIGA 303
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEY+ GHY+LQGAS + AP AALM+NTG +FAN++
Sbjct: 304 TPEYMAGHYMLQGASSFMPVMALAPQPEETVVDMAAAPGGKTTYIAALMRNTGTIFANEI 363
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
SK+R K+I GN RLGV N++V DGR+
Sbjct: 364 SKDRLKSITGNLTRLGVTNTIVCNYDGRE 392
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+E ++NYALRKR+VK+VPTGL+FG EGFV YR + + P ++
Sbjct: 470 EEDEVIINYALRKRNVKVVPTGLEFGREGFVRYRDFR-FHPSLK 512
>gi|170087176|ref|XP_001874811.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650011|gb|EDR14252.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 561
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 103/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQALVNRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 206 IEFFEANEVSRPVTIRTNTLRTRRRDLAQALVNRGVNLEPIGKWTNVGLQVFESSVPIGA 265
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS AP AAL++NTGV+FAND
Sbjct: 266 TPEYLAGHYMLQAASSLLPVIALSPQPNERVLDMASAPGGKTTHIAALLQNTGVVFANDA 325
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 326 NKARTKSLTANVHRLGCKNVVVCSYDGREFPK 357
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV TGL FG EGF YR K++ P +
Sbjct: 430 DENEAVVDYALRKRPNVKLVDTGLSFGREGFTKYR-GKTFNPSL 472
>gi|403411733|emb|CCL98433.1| predicted protein [Fibroporia radiculosa]
Length = 655
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 102/152 (67%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 293 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 352
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + AP AALM+NTGV+FAND
Sbjct: 353 TPEYLAGQYMLQAASSFLPVIALAPQPNERVLDMASAPGGKTTHMAALMENTGVVFANDA 412
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
K R+K++ N HRLG N VV DGR++ K
Sbjct: 413 KKARTKSLTANVHRLGCKNVVVCSYDGREFPK 444
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENEAVV+YALRKR +VKLV TGL+FG G+ YR
Sbjct: 517 DENEAVVDYALRKRPNVKLVDTGLEFGRPGYTKYR 551
>gi|302691038|ref|XP_003035198.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
gi|300108894|gb|EFJ00296.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
Length = 422
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 107/152 (70%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQ L+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 56 IEFFEANEVPRPVTIRTNTLRTRRRDLAQTLINRGVNLEPIGKWTNVGLQVFESSVPIGA 115
Query: 61 TPEYLGGHYILQGASKYWIC-----APH-RAAKLA----------AALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + PH R +A AAL++NTGV+FAND
Sbjct: 116 TPEYLAGHYMLQAASSFLPVIALDPQPHERVLDMASAPGGKTTHIAALLQNTGVVFANDA 175
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K+R+K++ N HR+G N VV DGR++ K
Sbjct: 176 NKQRTKSLTANVHRMGCKNVVVCSYDGREFPK 207
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAV++YALRKR +VKLV TGL+FG + ++R K++ P +
Sbjct: 280 DENEAVIDYALRKRPNVKLVDTGLEFGRPAYTSFR-GKTFHPSV 322
>gi|294887892|ref|XP_002772268.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
marinus ATCC 50983]
gi|239876343|gb|EER04084.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
marinus ATCC 50983]
Length = 658
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 16/149 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ EA++ RP+TIR NT+KTRRR LAQ L+ RG ++P G+W+KVGL + S VPIGA
Sbjct: 253 VQLFEANDRPRPMTIRANTIKTRRRLLAQQLIARGCQVEPTGEWTKVGLTVKESKVPIGA 312
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + AP +M+N GVLFAND+
Sbjct: 313 TPEYLSGRYMLQSASSFVPVQALNAQPGETVLDMSAAPGGKTTYIGQMMQNQGVLFANDL 372
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
++R A++ N HRLG+ N VVT +DGR+
Sbjct: 373 REDRCTALIANVHRLGLSNVVVTAMDGRK 401
>gi|393245574|gb|EJD53084.1| NOL1/NOP2/sun family putative RNA met [Auricularia delicata
TFB-10046 SS5]
Length = 460
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRGVNL+PIGKW+ VGL ++ S+VPIGA
Sbjct: 92 IEFFEANEVPRPVTIRTNTLRTRRRDLAQALINRGVNLEPIGKWTNVGLQVFESSVPIGA 151
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP +AL++NTG++FAND
Sbjct: 152 TPEYLAGHYMLQAASSFLPVIALGPQPNERILDMASAPGGKTTYISALLQNTGLVFANDA 211
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 212 NKARTKSLTANIHRLGCKNVVVCNYDGREFPK 243
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
+ENEAVV+YALRKR +V+L+PTGL+FG EG+ YR
Sbjct: 316 DENEAVVDYALRKRPNVRLLPTGLEFGKEGYTRYR 350
>gi|367000333|ref|XP_003684902.1| hypothetical protein TPHA_0C03150 [Tetrapisispora phaffii CBS 4417]
gi|357523199|emb|CCE62468.1| hypothetical protein TPHA_0C03150 [Tetrapisispora phaffii CBS 4417]
Length = 608
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQALVN+GVNL PIG W+KVGL I++S VPIGA
Sbjct: 254 LEFFEANEIARPITIRTNTLRTRRRDLAQALVNKGVNLQPIGTWTKVGLQIFDSQVPIGA 313
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
T EYL G YILQ AS + AP +ALMKNTG +FAND
Sbjct: 314 TSEYLAGQYILQAASSFLPVVALDPQLNERVLDMAAAPGGKTTYISALMKNTGCVFANDA 373
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 374 NKARTKSLIANIHRLGCTNTIVCNYDAREFPK 405
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAVV+YALRKR +V+LV TGL G EGF ++R K + P ++
Sbjct: 478 EEDEAVVDYALRKRPNVRLVDTGLAIGKEGFTSFR-GKKFHPSVK 521
>gi|308801207|ref|XP_003077917.1| Cytoskeleton-associated protein and related proteins (ISS)
[Ostreococcus tauri]
gi|116056368|emb|CAL52657.1| Cytoskeleton-associated protein and related proteins (ISS), partial
[Ostreococcus tauri]
Length = 768
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 84/123 (68%), Gaps = 16/123 (13%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M LEA+E QRP+TIRTNTLK RRR+LA++L+NRGVNLDP+GKWSKVGL++Y+S VPIGA
Sbjct: 491 MELLEANEQQRPVTIRTNTLKVRRRELAESLINRGVNLDPVGKWSKVGLIVYDSRVPIGA 550
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
TPEY+ G YILQ AS + C AP AALM+NTG+ F V
Sbjct: 551 TPEYMAGQYILQSASSFLPCMALAPQEGERVLDMAAAPGGKTTYLAALMRNTGMDFCKRV 610
Query: 105 SKE 107
+E
Sbjct: 611 PEE 613
>gi|302412531|ref|XP_003004098.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102]
gi|261356674|gb|EEY19102.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102]
Length = 713
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 29/201 (14%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RRDLAQ+L++RGV L+P+GKWSKVGL ++ S++P+GA
Sbjct: 284 FSFFEANESPRPIVIRTNTLRTHRRDLAQSLISRGVVLEPVGKWSKVGLQVFESSIPLGA 343
Query: 61 TPEYLGGHYILQGASKYWICAPHRAAK-----------LAAALMKNTGVLFANDVS---- 105
+PEYL GHYIL GA + + + + A + L A TGV+ A D S
Sbjct: 344 SPEYLAGHYILLGA-RNVVVSNYDAREFPKPMGGFDRVLLDAPCSGTGVI-AKDPSVKTN 401
Query: 106 -KERSKAIVGNFHRLGVINSVVTCLDGRQYG----------KPEENEAVVNYALRKR-DV 153
ER ++ + + ++ ++ + + G EENEAVV YAL +R +V
Sbjct: 402 KTERDFMMLPHMQKQLLLAAIDSVNHNSKTGGFIVYSTCSVTIEENEAVVQYALSRRPNV 461
Query: 154 KLVPTGLDFGTEGFVNYRQNK 174
KLV TGL FG EGF +Y K
Sbjct: 462 KLVDTGLPFGKEGFTSYMGKK 482
>gi|346975283|gb|EGY18735.1| Nop16-like protein NOP2 [Verticillium dahliae VdLs.17]
Length = 703
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 29/197 (14%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
SF EA+E+ RP+ IRTNTL+T RRDLAQ+L++RGV L+P+GKWSKVGL ++ S++P+GA
Sbjct: 284 FSFFEANESPRPIVIRTNTLRTHRRDLAQSLISRGVVLEPVGKWSKVGLQVFESSIPLGA 343
Query: 61 TPEYLGGHYILQGASKYWICAPHRAAK-----------LAAALMKNTGVLFANDVS---- 105
+PEYL GHYIL GA + + + + A + L A TGV+ A D S
Sbjct: 344 SPEYLAGHYILLGA-RNVVVSNYDAREFPKPMGGFDRVLLDAPCSGTGVI-AKDPSVKTN 401
Query: 106 -KERSKAIVGNFHRLGVINSVVTCLDGRQYG----------KPEENEAVVNYALRKR-DV 153
ER ++ + + ++ ++ + + G EENEAVV YAL +R +V
Sbjct: 402 KTERDFMMLPHMQKQLLLAAIDSVNHNSKTGGFIVYSTCSVTIEENEAVVQYALSRRPNV 461
Query: 154 KLVPTGLDFGTEGFVNY 170
KLV TGL FG EGF +Y
Sbjct: 462 KLVDTGLPFGKEGFTSY 478
>gi|336379782|gb|EGO20936.1| hypothetical protein SERLADRAFT_475366 [Serpula lacrymans var.
lacrymans S7.9]
Length = 491
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 100/150 (66%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQ LVNRGV L+PIGKW+ VGL ++ S VPIGA
Sbjct: 132 IEFFEANEVARPVTIRTNTLRTRRRDLAQTLVNRGVTLEPIGKWTNVGLQVFESGVPIGA 191
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AAL++NTGV+FAND
Sbjct: 192 TPEYLAGHYMLQAASSFLPVIALAPQPNERILDMASAPGGKTTHIAALLQNTGVVFANDA 251
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
++ R+K++ N HRLG N +V DGR++
Sbjct: 252 NQARTKSLTANVHRLGCKNVIVCSYDGREF 281
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV TGL+FG EGF +R K + P +
Sbjct: 356 DENEAVVDYALRKRSNVKLVDTGLEFGREGFTRFR-GKIFNPSL 398
>gi|336367055|gb|EGN95400.1| hypothetical protein SERLA73DRAFT_112877 [Serpula lacrymans var.
lacrymans S7.3]
Length = 450
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 100/150 (66%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQ LVNRGV L+PIGKW+ VGL ++ S VPIGA
Sbjct: 91 IEFFEANEVARPVTIRTNTLRTRRRDLAQTLVNRGVTLEPIGKWTNVGLQVFESGVPIGA 150
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AAL++NTGV+FAND
Sbjct: 151 TPEYLAGHYMLQAASSFLPVIALAPQPNERILDMASAPGGKTTHIAALLQNTGVVFANDA 210
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
++ R+K++ N HRLG N +V DGR++
Sbjct: 211 NQARTKSLTANVHRLGCKNVIVCSYDGREF 240
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
+ENEAVV+YALRKR +VKLV TGL+FG EGF +R K + P +
Sbjct: 315 DENEAVVDYALRKRSNVKLVDTGLEFGREGFTRFR-GKIFNPSL 357
>gi|164655415|ref|XP_001728837.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966]
gi|159102723|gb|EDP41623.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966]
Length = 763
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++F EA+E RP+TIRTNTL+TRRRDLAQ L+NRGV+L+P+G WSKVGL ++ S+VPIGA
Sbjct: 405 IAFFEANEVPRPVTIRTNTLRTRRRDLAQKLINRGVSLEPVGPWSKVGLQVFESSVPIGA 464
Query: 61 TPEYLGGHYILQGASKYWIC-----APH-RAAKLA----------AALMKNTGVLFANDV 104
TPEYL G Y+LQ S + C PH R +A +ALM+NTG +FAND
Sbjct: 465 TPEYLVGEYMLQAVSSFLPCMALAPQPHERILDMASAPGGKVTYLSALMQNTGCVFANDS 524
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R K++ N HR+G N VV DGRQ+ K
Sbjct: 525 NKARIKSLTANIHRMGCRNVVVCNYDGRQFPK 556
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 146 YALRKR-DVKLVPTGLDFGTEGFVNYRQNK 174
YALRKR +V++VPTG+DFG +G +R K
Sbjct: 637 YALRKRPNVRIVPTGIDFGRDGLKCFRGKK 666
>gi|253741386|gb|EES98257.1| Nucleolar protein NOP2 [Giardia intestinalis ATCC 50581]
Length = 497
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 94/151 (62%), Gaps = 16/151 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
SF+ A E RPLTIR N+LK +RR LAQ L+ RGVNLDP+G W K GL I++S VPIGAT
Sbjct: 208 SFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDPLGDWCKDGLQIFSSQVPIGAT 267
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL G+Y++Q A+ + AP ALM+++G++ AND++
Sbjct: 268 PEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMN 327
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
++R A+ N R+GV +V++C D R+ +
Sbjct: 328 RDRIPALQANLARMGVTCAVISCSDARELAQ 358
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++Y L KR+V++V FG G + SY P +Q K R P
Sbjct: 432 ENEAVIDYILHKRNVEVVDLPFSFGKPGITKF-NGMSYHPSIQ-KARRFYP 480
>gi|159118308|ref|XP_001709373.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
gi|157437489|gb|EDO81699.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
Length = 502
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 94/151 (62%), Gaps = 16/151 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+ A E RPLTIR N+LK +RR LAQ L+ RGVNLDP+G W K GL I++S VPIGAT
Sbjct: 213 AFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDPLGDWCKDGLQIFSSQVPIGAT 272
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL G+Y++Q A+ + AP ALM+++G++ AND++
Sbjct: 273 PEYLRGYYMIQDAASFLPPMALSPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMN 332
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
++R A+ N R+GV +V++C D R+ +
Sbjct: 333 RDRIPALQANLARMGVTCAVISCSDARELAQ 363
>gi|308159767|gb|EFO62287.1| Nucleolar protein NOP2 [Giardia lamblia P15]
Length = 502
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 16/148 (10%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+ A E RPLTIR N+LK +RR LAQ L+ RGVNLDP+G W K GL I++S VPIGAT
Sbjct: 213 AFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDPLGDWCKDGLQIFSSQVPIGAT 272
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
PEYL G+Y++Q A+ + AP ALM+++G++ AND++
Sbjct: 273 PEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMN 332
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQ 133
++R A+ N R+GV +V++C D R+
Sbjct: 333 RDRIPALQANLARMGVTCAVISCSDARE 360
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++Y L KR+V++V FG G + SY P ++ K R P
Sbjct: 437 ENEAVIDYILHKRNVEVVDLPFSFGKPGITRF-NGMSYHPAIR-KARRFYP 485
>gi|401825209|ref|XP_003886700.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
gi|395459845|gb|AFM97719.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 91/147 (61%), Gaps = 17/147 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
F+E SE QRP TIR NTL RR+D+++ L RGV+LD + W G VI+ S+VPIGATP
Sbjct: 24 FIEESEKQRPTTIRINTLLKRRKDVSKLLRGRGVDLDDLS-WIDSGCVIFKSSVPIGATP 82
Query: 63 EYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+Y LQGA+ +CA P AALM+NTGV++ANDV++
Sbjct: 83 EYLAGYYCLQGAASMLPVLNMELKEGLSVVDLCAAPGGKTTHIAALMENTGVIYANDVNE 142
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQ 133
ER + N R+GV N +V +DGR+
Sbjct: 143 ERIAGLKSNIQRMGVRNCIVMNMDGRK 169
>gi|387592440|gb|EIJ87464.1| nucleolar protein [Nematocida parisii ERTm3]
gi|387596924|gb|EIJ94544.1| nucleolar protein [Nematocida parisii ERTm1]
Length = 415
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 91/147 (61%), Gaps = 17/147 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+ AS+ +RPLTIR NTL +R + + LVNRGVN+D I +W+ V+YNS VPIGAT
Sbjct: 61 AFMIASDQKRPLTIRVNTLFDKRAAIMKKLVNRGVNIDGI-QWNDCSAVVYNSDVPIGAT 119
Query: 62 PEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVS 105
PEYL G YILQ S +CA P AALM NTG ++ANDVS
Sbjct: 120 PEYLAGLYILQSPSSSLAVIALDPQENEVIVDMCAAPGGKTTHIAALMNNTGTIYANDVS 179
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGR 132
+ER+ ++ N R+GV N++VT + GR
Sbjct: 180 EERALSLAANLQRMGVSNTIVTVMGGR 206
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYR 171
EENE +V+Y L+KR + K++ T L G EGF +YR
Sbjct: 280 EENEYIVDYLLKKRKNAKVIETNLPIGKEGFKSYR 314
>gi|392513053|emb|CAD24979.2| NUCLEOLAR PROTEIN (NOL1/NOP2 family) [Encephalitozoon cuniculi
GB-M1]
Length = 306
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 92/148 (62%), Gaps = 17/148 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+E SE QRP+TIR NTL R+D+ + L RGV+LD + W+ G V++ S+VPIGAT
Sbjct: 23 AFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVDLDAL-SWTDSGCVVFKSSVPIGAT 81
Query: 62 PEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVS 105
PEYL G+Y LQGA+ +CA P AALM+NTGV++ANDV+
Sbjct: 82 PEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTGVIYANDVN 141
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ER + N R+GV N +V +DGR+
Sbjct: 142 EERIAGLKSNIQRMGVRNCIVMNMDGRK 169
>gi|85691089|ref|XP_965944.1| nucleolar protein [Encephalitozoon cuniculi GB-M1]
Length = 370
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 92/148 (62%), Gaps = 17/148 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+E SE QRP+TIR NTL R+D+ + L RGV+LD + W+ G V++ S+VPIGAT
Sbjct: 87 AFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVDLDAL-SWTDSGCVVFKSSVPIGAT 145
Query: 62 PEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVS 105
PEYL G+Y LQGA+ +CA P AALM+NTGV++ANDV+
Sbjct: 146 PEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTGVIYANDVN 205
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ER + N R+GV N +V +DGR+
Sbjct: 206 EERIAGLKSNIQRMGVRNCIVMNMDGRK 233
>gi|449329777|gb|AGE96046.1| nucleolar protein [Encephalitozoon cuniculi]
Length = 370
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 92/148 (62%), Gaps = 17/148 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+E SE QRP+TIR NTL R+D+ + L RGV+LD + W+ G V++ S+VPIGAT
Sbjct: 87 AFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVDLDAL-SWTDSGCVVFKSSVPIGAT 145
Query: 62 PEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVS 105
PEYL G+Y LQGA+ +CA P AALM+NTGV++ANDV+
Sbjct: 146 PEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTGVIYANDVN 205
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ER + N R+GV N +V +DGR+
Sbjct: 206 EERIAGLKSNIQRMGVRNCIVMNMDGRK 233
>gi|396080811|gb|AFN82432.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
romaleae SJ-2008]
Length = 306
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 17/147 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
F+E SE QRP TIR NTL R+D+++ L RGV+LD + W+ G V++ S+VPIGATP
Sbjct: 24 FIEESEKQRPTTIRINTLLKHRKDVSKLLRGRGVDLDDLS-WTDSGCVVFKSSVPIGATP 82
Query: 63 EYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+Y LQGA+ +CA P AALM+NTG+++ANDV++
Sbjct: 83 EYLAGYYCLQGAASMLPVLNMELKEGLTVVDLCAAPGGKTTHIAALMENTGIIYANDVNE 142
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+R + N R+GV N +V +DGR+
Sbjct: 143 DRMAGLKSNIQRMGVRNCIVMNMDGRK 169
>gi|303388173|ref|XP_003072321.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
gi|303301460|gb|ADM10961.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
Length = 306
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 17/147 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
F+E SE QRP TIR NTL RR+D+++ L RGV++D + W+ G VI+ S+VPIGATP
Sbjct: 24 FIEESEKQRPTTIRINTLLKRRKDVSKLLRGRGVDIDDLS-WTDSGCVIFKSSVPIGATP 82
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+Y LQGA+ +C AP AALM+NTG ++AND+++
Sbjct: 83 EYLAGYYCLQGAASMLPVLNMELKEGLTVVDLCAAPGGKTTHIAALMENTGTIYANDMNE 142
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQ 133
ER + N R+GV N ++ +DGR+
Sbjct: 143 ERIAGLKSNVQRMGVKNCIIMNMDGRK 169
>gi|296089948|emb|CBI39767.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 75/114 (65%), Gaps = 16/114 (14%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M +EA E RP+ +RTNTLKTRRRDLA L+NRGVNLDP+ KWSKVGLV+Y+S VPIGA
Sbjct: 226 MELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGA 285
Query: 61 TPEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGV 98
TPEY+ G Y+LQ AS + AP ++ AALMKN G+
Sbjct: 286 TPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNGGL 339
>gi|47221584|emb|CAF97849.1| unnamed protein product [Tetraodon nigroviridis]
Length = 448
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 81/152 (53%), Gaps = 44/152 (28%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E QRP+TIRTNTLKTRRRDLAQA A
Sbjct: 64 VDFLEANEIQRPVTIRTNTLKTRRRDLAQA----------------------------SA 95
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQGAS + AP A LM+NTGV+ AND
Sbjct: 96 TPEYLSGQYMLQGASSFLPVMALSPQEGELVLDMSSAPGGKTTYIAQLMRNTGVIVANDA 155
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N+VV DGRQ+ K
Sbjct: 156 NAERLKSVVGNIHRLGVTNTVVCNYDGRQFPK 187
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGF 167
EENE VV+YAL+KR+VKLVPTGLDFG EGF
Sbjct: 260 EENEWVVDYALKKRNVKLVPTGLDFGKEGF 289
>gi|269859444|ref|XP_002649447.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
H348]
gi|220067210|gb|EED44677.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
H348]
Length = 311
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 90/149 (60%), Gaps = 17/149 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FL+A+E +RP+ +R NT+ RR+D+ L R V ++ + +W + G++ ++S VP+GATP
Sbjct: 29 FLDANEKKRPIILRVNTMLKRRKDILNLLYQRKVEMEKL-EWCEEGIIAFSSAVPLGATP 87
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+YI+Q A+ + +C AP AA+M NTG+++AN++ K
Sbjct: 88 EYLAGYYIVQSANSFLPVLNLELNNDLTVVDLCAAPGGKTTHIAAIMNNTGIVYANEICK 147
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
ER+ A+ N R+G N ++T +D + +
Sbjct: 148 ERTYALRSNIQRMGFTNCIITNMDAKLFN 176
>gi|294897435|ref|XP_002775969.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239882366|gb|EER07785.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 150
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 74/124 (59%), Gaps = 16/124 (12%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ EA++ RP+TIR NT+KTRRR LAQ L+ RG ++P G+W+KVGL + S VPIGA
Sbjct: 27 VQLFEANDRPRPMTIRANTIKTRRRLLAQQLIARGCQVEPTGEWTKVGLTVKESKVPIGA 86
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G Y+LQ AS + AP +M+N GVLFAND+
Sbjct: 87 TPEYLSGRYMLQSASSFVPVQALNAQPGETVLDMSAAPGGKTTYIGQMMQNQGVLFANDL 146
Query: 105 SKER 108
++R
Sbjct: 147 REDR 150
>gi|71404146|ref|XP_804805.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
gi|70867957|gb|EAN82954.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 328
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 16/127 (12%)
Query: 30 ALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKY---WICAPH--- 83
AL+ RG++++P+ KWSKVGL ++ S VPI T EYL G Y+LQ A + AP
Sbjct: 1 ALLKRGMHVEPLEKWSKVGLQVFESNVPIAGTIEYLAGQYMLQSAVSFLPVMALAPQEKE 60
Query: 84 RAAKLAAA----------LMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
R +AAA LMKNTGVLFANDVS+ R+KA+ N RLGV N+VVT DG
Sbjct: 61 RVLDMAAAPGGKTTYIAQLMKNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAG 120
Query: 134 YGKPEEN 140
Y K +N
Sbjct: 121 YNKIMKN 127
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV +A+R+R V++V GL FG G YR ++ ++ +MQ
Sbjct: 192 EENEAVVEFAVRRRHVEIVEMGLPFGRPGLTKYRHHR-FQEKMQ 234
>gi|385303600|gb|EIF47664.1| nucleolar protein nop2 [Dekkera bruxellensis AWRI1499]
Length = 354
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 67/77 (87%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTL+TRRRDLAQALVNRGVNL PIGKW+KVGL I++S VPIGA
Sbjct: 275 MEFFEANEVHRPITIRTNTLRTRRRDLAQALVNRGVNLQPIGKWTKVGLQIFDSQVPIGA 334
Query: 61 TPEYLGGHYILQGASKY 77
TPEYL GHYILQ AS +
Sbjct: 335 TPEYLAGHYILQAASSF 351
>gi|378754470|gb|EHY64502.1| nucleolar protein [Nematocida sp. 1 ERTm2]
Length = 201
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 78/136 (57%), Gaps = 17/136 (12%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+FL AS+ +RP TIR NTL+ R + + L+NRG+N++PI KW+ V+YNS +PIGAT
Sbjct: 51 AFLIASDQKRPTTIRINTLRETRESVIKKLINRGINIEPI-KWNNCSAVVYNSDIPIGAT 109
Query: 62 PEYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVS 105
PEYL G YILQ + +C AP AALM NTG L+ANDV
Sbjct: 110 PEYLAGSYILQSPTSTLAAIALNPTENETVVDMCAAPGGKTTHLAALMNNTGTLYANDVC 169
Query: 106 KERSKAIVGNFHRLGV 121
R+ ++V F G
Sbjct: 170 PNRALSLVRKFTTDGC 185
>gi|440492091|gb|ELQ74688.1| tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
[Trachipleistophora hominis]
Length = 305
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 17/140 (12%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE SE +RP+ IR NTLK +++LA+ L+ RG+ ++ + +S L IY+S VP+GATP
Sbjct: 25 FLEESEKKRPIVIRVNTLKATKKELAKNLLQRGMTVESLDFYSNC-LTIYDSKVPVGATP 83
Query: 63 EYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSK 106
EYL G Y +QGAS +CA P + A +MKNTG+L+ + +
Sbjct: 84 EYLDGWYYIQGASSILAVMNLDVKEHMSVLDMCASPGGKSTFIAEMMKNTGMLYLVENNP 143
Query: 107 ERSKAIVGNFHRLGVINSVV 126
ER ++ GN R+GV NSVV
Sbjct: 144 ERISSLSGNLLRMGVQNSVV 163
>gi|429965868|gb|ELA47865.1| hypothetical protein VCUG_00585 [Vavraia culicis 'floridensis']
Length = 305
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 17/140 (12%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE SE +RP+ IR NTLKT +++LA+ L RG+ ++ + ++ L IY+S VPIGATP
Sbjct: 25 FLEESEKKRPVVIRVNTLKTTKKELAKNLSQRGMAIENLDFYNNC-LTIYDSKVPIGATP 83
Query: 63 EYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSK 106
EYL G Y +QGAS +CA P + A +MKNTG+L+ + +
Sbjct: 84 EYLDGWYYIQGASSILSVINLDVKEHMSVLDMCASPGGKSTFIAEMMKNTGMLYLVENNP 143
Query: 107 ERSKAIVGNFHRLGVINSVV 126
+R ++ GN R+GV NSVV
Sbjct: 144 DRISSLAGNLLRMGVQNSVV 163
>gi|402470997|gb|EJW04946.1| hypothetical protein EDEG_00921 [Edhazardia aedis USNM 41457]
Length = 465
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F+E SE RP IRTNTLK RR+DLA+ L+ RG+++DP+ +W K GLV+Y S VP+GA
Sbjct: 55 MQFMEESEKSRPTVIRTNTLKIRRKDLAKLLIGRGMDVDPL-EWCKEGLVVYKSAVPVGA 113
Query: 61 TPEYLGGHYILQGASKYW 78
TPEYL G Y +QGAS +
Sbjct: 114 TPEYLCGLYSVQGASSFL 131
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 81 APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
AP AALM+N G+L+AND+ KER KAI N RLG+ N+VV C DGR+
Sbjct: 273 APGGKTTHIAALMQNNGILYANDIDKERCKAIQSNLSRLGITNTVVMCQDGRE 325
>gi|299753547|ref|XP_001833346.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
okayama7#130]
gi|298410351|gb|EAU88451.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
okayama7#130]
Length = 576
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 86/152 (56%), Gaps = 31/152 (20%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTL+TRRRDLAQAL+NRG + P P A
Sbjct: 237 IEFFEANEVSRPVTIRTNTLRTRRRDLAQALINRGSSKVP---------------SPSCA 281
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQ AS + AP AALM+NTGV+FAND
Sbjct: 282 TPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGKTTHMAALMQNTGVIFANDA 341
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K++ N HRLG N VV DGR++ K
Sbjct: 342 NKARTKSLTANVHRLGCKNVVVCSYDGREFPK 373
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV+YAL+KR +V+LV TGL FG EGF YR K++ P ++
Sbjct: 446 EENEAVVDYALKKRPNVRLVDTGLSFGREGFTQYR-GKTFHPSVK 489
>gi|300699440|ref|XP_002994849.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01]
gi|239601481|gb|EEQ81178.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01]
Length = 185
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 16/107 (14%)
Query: 43 KWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYW---------------ICA-PHRAA 86
+W LVI+NS+VP+GATPEYL G+ I+QGAS +CA P +
Sbjct: 7 EWCDDALVIFNSSVPVGATPEYLAGYLIIQGASSMLSVLNLDVKENLKIIDMCAAPGGKS 66
Query: 87 KLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
+ +ALM NTGVL++ND+S +R KA+ N R+GV N++VT LD R+
Sbjct: 67 QYISALMNNTGVLYSNDISDDRIKALRSNLLRMGVTNAIVTNLDARK 113
>gi|162605886|ref|XP_001713458.1| nucleolar protein [Guillardia theta]
gi|13794390|gb|AAK39767.1|AF083031_124 nucleolar protein [Guillardia theta]
Length = 358
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FL ++E +RPL+IR N+LK + +V +G+ L ++ + + NS++ +G+T
Sbjct: 68 FLTSNEKKRPLSIRINSLKKNSIETVNLIVRKGIKLCRFNHFNDLAFICLNSSISLGSTT 127
Query: 63 EYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+Y LQ S AP + L + M+N G+L +ND+ K
Sbjct: 128 EYLCGYYTLQSISSLLPVISLDPTTNEKILDLAAAPGNKSTLISQFMRNNGILISNDIKK 187
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDG 131
R K++V + HRL V NS++ DG
Sbjct: 188 LRIKSLVNSIHRLNVDNSIIANYDG 212
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
EENE V+ Y L KR+V+++ TG+DFG G Y+ + E +K +R P
Sbjct: 289 EENECVIQYVLSKRNVEIISTGIDFGLPGLTTYKNIRF--DESMKKCKRFYP 338
>gi|156098789|ref|XP_001615410.1| proliferating-cell nucleolar antigen p120 [Plasmodium vivax Sal-1]
gi|148804284|gb|EDL45683.1| proliferating-cell nucleolar antigen p120, putative [Plasmodium
vivax]
Length = 615
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE + + + +RTNT+K R +L L ++ +N + W+ VG+VI ++ +G+
Sbjct: 223 FLEMNNLPKEIHLRTNTVKITRNNLLNILKSQNINAEEGANWNNVGIVINDANSNVGSLN 282
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+Y+LQ AS +C AP AL KN G ++ANDV+K
Sbjct: 283 EYLYGYYMLQSASSLIPVLELNVNPEDTILDMCAAPGGKCTFICALQKNRGHVYANDVNK 342
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R KAI N RLG+ N ++T D + GK
Sbjct: 343 MRCKAIEANASRLGIQNLIITSFDALKIGK 372
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENE V+NY L+KRDV ++PT + G G +YR+
Sbjct: 441 EENEQVINYILKKRDVNVLPTDIQIGDPGITHYRK 475
>gi|399949975|gb|AFP65631.1| nucleolar protein [Chroomonas mesostigmatica CCMP1168]
Length = 367
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F + + RPLTIR N +K + + + + +G+ L +S +I G
Sbjct: 77 LEFFKYNHRPRPLTIRFNDIKIKNIQIKEIMEKKGIKLFLDKNFSNFAAIINKKGFNFGG 136
Query: 61 TPEYLGGHYILQGASKYW-ICA--PHRAAK---LAAA----------LMKNTGVLFANDV 104
+PEYL G+Y LQG S ++ I A P + K LAAA LM N+G+L AND
Sbjct: 137 SPEYLAGYYTLQGFSSFFPIFALNPKKKEKILDLAAAPGGKSSYISQLMNNSGILVANDK 196
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R K++V N HRLG+ N ++T DG +
Sbjct: 197 NKSRLKSLVSNIHRLGIENIIITNFDGSVF 226
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEM 180
EENE ++ YA+ KR +K++PTGL FG GF+NY++ K++ M
Sbjct: 301 EENEMIIQYAIEKRKIKILPTGLKFGLPGFLNYKR-KNFHKSM 342
>gi|221056324|ref|XP_002259300.1| methyltransferase [Plasmodium knowlesi strain H]
gi|193809371|emb|CAQ40073.1| methyltransferase, putative [Plasmodium knowlesi strain H]
Length = 641
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE + + + +RTNT+K R++L L ++ +N + W+ VG+VI + +G+
Sbjct: 246 FLEMNNLPKEIHLRTNTVKITRKNLMNILKSQNINAEEGENWNNVGIVINDVNSNVGSLN 305
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EY+ G+Y++Q AS +C AP AL KN G ++AND++K
Sbjct: 306 EYMYGYYMIQSASSLIPVLELNVQPDDTVLDMCAAPGGKCTFICALQKNRGFVYANDINK 365
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R KAI N R+G+ N V+T D + G+
Sbjct: 366 MRCKAIEANASRMGIHNLVITSFDALKVGQ 395
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENE V+NY L+KRDV ++P G G +YR+
Sbjct: 464 EENEQVINYILKKRDVNILPLDTQIGDPGITHYRK 498
>gi|389583837|dbj|GAB66571.1| proliferating-cell nucleolar antigen p120, partial [Plasmodium
cynomolgi strain B]
Length = 329
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE + + + +RTNT+K R++L L ++ ++ + W+ VG+VI ++ +G+
Sbjct: 44 FLEMNNLPKEIHLRTNTIKITRKNLLHILKSQNISAEEGENWNNVGIVINDANSNVGSLN 103
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EY+ G+Y++Q AS +C AP AL KN G ++ANDV+K
Sbjct: 104 EYMYGYYMIQSASSLIPVLELNVQPNEIILDMCAAPGGKCTFICALQKNKGFVYANDVNK 163
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R KAI N R+G+ N +VT D + G+
Sbjct: 164 MRCKAIEANASRMGIHNLIVTSFDALKIGE 193
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENE V+NY L+KRDV ++PT + G G +YR+
Sbjct: 262 EENEQVINYILKKRDVNVLPTNIQIGDPGITHYRK 296
>gi|124804351|ref|XP_001347976.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
gi|23496230|gb|AAN35889.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
Length = 634
Score = 86.7 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE + + + +RTNTLK R +L + L N+ V++ W+ VG+ I + +G+
Sbjct: 220 FLEINNMPKEIHLRTNTLKITRNNLMKILKNQNVSVQEGESWNHVGITIKDVNTNVGSLN 279
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+YI+Q +S +C AP L KN GV++AND++K
Sbjct: 280 EYLYGYYIIQSSSSLMPVLELNIQEDDMVLDMCAAPGGKCTFMCTLKKNRGVVYANDINK 339
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R KAI + R+G+ N +VTC+D + K
Sbjct: 340 LRCKAIEAHASRMGINNLIVTCIDALKIQK 369
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE V+NY L+KRDV L+PT ++ G G YR+ +
Sbjct: 438 EENEQVINYILKKRDVNLLPTNINIGDPGITQYRKKQ 474
>gi|331226503|ref|XP_003325921.1| Yna1p [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 601
Score = 86.7 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 45 SKVGLVIYNSTVPIGATPEYLGGHYILQGASKY----------------WICAPHRAAKL 88
+KVGL ++ S+VPIGATPEYL GHY+LQ AS + AP
Sbjct: 224 NKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPGEKCLDMSAAPGGKTTF 283
Query: 89 AAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+A+MKNTG LFAND SK R K+++ N R+G N +++ D R + K
Sbjct: 284 MSAMMKNTGKLFANDSSKARCKSLMANVSRMGCHNVIISNHDARDFPK 331
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE+VV+YAL+KR +VKLV TG+ FG EGFV +R K + P ++
Sbjct: 404 EENESVVDYALKKRPNVKLVETGIGFGKEGFVRFR-GKIFNPSLK 447
>gi|160331223|ref|XP_001712319.1| nop2 [Hemiselmis andersenii]
gi|159765766|gb|ABW97994.1| nop2 [Hemiselmis andersenii]
Length = 366
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
F +++ET RPLTIR N+++ + L N G+ K +I + +G P
Sbjct: 78 FFKSNETPRPLTIRINSIRNGEENFQNNLRNMGIQKIFEEKLLNFAGIIKRKNIRLGKNP 137
Query: 63 EYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
E+L G++ LQG S ++ AP A + +M+NTG+ AND +K
Sbjct: 138 EFLAGYFTLQGLSSFFSVIALDPQKGERILEIAAAPGGKATFISQIMENTGICIANDKNK 197
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDG 131
R ++V HRLG+ NS+VT DG
Sbjct: 198 SRLNSLVSTIHRLGIENSIVTNFDG 222
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE+++ YA+ KR+VK+V TGL FG GFV Y+ N+ + +M
Sbjct: 300 EENESIIQYAVEKRNVKIVKTGLSFGIPGFVKYK-NEIFNKKMH 342
>gi|429963035|gb|ELA42579.1| hypothetical protein VICG_00331 [Vittaforma corneae ATCC 50505]
Length = 131
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLEA+E QRP +R N L TRR+DLA L R V + + +W+ LV + S VP+GATP
Sbjct: 26 FLEANEKQRPTVLRVNPLLTRRKDLAYTLSQRKVETENL-EWTDTALVAFKSDVPLGATP 84
Query: 63 EYLGGHYILQGAS 75
EYL GHYI+QGA+
Sbjct: 85 EYLAGHYIMQGAN 97
>gi|330038980|ref|XP_003239753.1| nucleolar protein [Cryptomonas paramecium]
gi|327206678|gb|AEA38855.1| nucleolar protein [Cryptomonas paramecium]
Length = 348
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FL S+ RPL+IR NTLK +D+ LV + + + + + ++ + + I A
Sbjct: 57 VEFLLHSQINRPLSIRFNTLKKSPKDIFFVLVKKKIKIFFLKNLYNLVGIVKQTKMKICA 116
Query: 61 TPEYLGGHYILQGASKYW--IC--------------APHRAAKLAAALMKNTGVLFANDV 104
PEYL G Y +Q S ++ IC AP L + +M NTG++ AND+
Sbjct: 117 IPEYLAGLYTIQSISSFFSVICMNIKKNEKILDLAAAPGSKTTLISQVMNNTGIVVANDI 176
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDG 131
+ R K+++GN HRLGV N+V+ +G
Sbjct: 177 NFLRIKSLIGNIHRLGVKNTVIINYNG 203
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE V+ YAL K+ V+++ T L G G+VN+ +N+
Sbjct: 281 EENECVIEYALNKKRVEILATHLGCGMPGYVNFDKNR 317
>gi|68067801|ref|XP_675834.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495242|emb|CAI04459.1| conserved hypothetical protein [Plasmodium berghei]
Length = 533
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE + + + +RTNTLK R +L + L N+ + + W+ V + + +++ +G+
Sbjct: 209 FLEINNMPKEIHLRTNTLKITRTNLLKILKNKNIAIQDGSNWNNVDITLTDTSSNVGSLN 268
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+YI+Q +S +C AP + KN G+++AND++K
Sbjct: 269 EYLYGYYIIQSSSSLIPVLELNIKENELVLDMCAAPGGKCTFICTIQKNKGIVYANDINK 328
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R KAI + R+G+ N ++T D + K
Sbjct: 329 LRCKAIEAHAARMGINNLIITSFDSLKINK 358
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENE V+NY L+KRDV L+P ++ G G ++YR+
Sbjct: 427 EENEQVINYILKKRDVNLLPIDINIGDPGIIHYRK 461
>gi|70945403|ref|XP_742525.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521557|emb|CAH82175.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 511
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE + + + +RTNTLK R +L + L N+ + + W+ V + + +++ +G+
Sbjct: 225 FLEINNMPKEIHLRTNTLKITRTNLLKILKNKNIAIQDGSTWNNVDITLTDTSSNVGSLN 284
Query: 63 EYLGGHYILQGASKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+YI+Q +S +C AP + KN G+++AND++K
Sbjct: 285 EYLYGYYIIQSSSSLIPVLELNIKENELVLDMCAAPGGKCTYICTIKKNKGIVYANDINK 344
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R KAI + R+G+ N ++T D + K
Sbjct: 345 MRCKAIEAHAARMGINNLIITSFDSLKINK 374
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 172
EENE V+NY L+KRDV L+PT ++ G G ++YR+
Sbjct: 443 EENEQVINYILKKRDVNLLPTDINIGDPGIIHYRK 477
>gi|433657747|ref|YP_007275126.1| Ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus BB22OP]
gi|432508435|gb|AGB09952.1| Ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus BB22OP]
Length = 478
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
S QRPL +IR NTLK D + ++G L P+ W G I S VP+G T
Sbjct: 30 SACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALMKN GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|260901577|ref|ZP_05909972.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AQ4037]
gi|308108539|gb|EFO46079.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AQ4037]
Length = 478
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
S QRPL +IR NTLK D + ++G L P+ W G I S VP+G T
Sbjct: 30 SACQRPLRKSIRVNTLKMSVEDFVKRADDKGWTLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALMKN GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|417319664|ref|ZP_12106213.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
parahaemolyticus 10329]
gi|328473635|gb|EGF44470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
parahaemolyticus 10329]
Length = 478
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
S QRPL +IR NTLK D + ++G L P+ W G I S VP+G T
Sbjct: 30 SACQRPLRKSIRVNTLKMSVEDFIKRAEDKGWTLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALMKN GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|28898386|ref|NP_797991.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
parahaemolyticus RIMD 2210633]
gi|153839322|ref|ZP_01991989.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus
AQ3810]
gi|260366026|ref|ZP_05778504.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus K5030]
gi|260876618|ref|ZP_05888973.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AN-5034]
gi|81839808|sp|Q87PA5.1|RSMF_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|28806603|dbj|BAC59875.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149747154|gb|EDM58142.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus
AQ3810]
gi|308094319|gb|EFO44014.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus AN-5034]
gi|308114205|gb|EFO51745.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus K5030]
Length = 478
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
S QRPL +IR NTLK D + ++G L P+ W G I S VP+G T
Sbjct: 30 SACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPV-PWCDNGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALMKN GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|260897142|ref|ZP_05905638.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus Peru-466]
gi|308086702|gb|EFO36397.1| ribosomal RNA small subunit methyltransferase F [Vibrio
parahaemolyticus Peru-466]
Length = 207
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
S QRPL +IR NTLK D + ++G L P+ W G I S VP+G T
Sbjct: 30 SACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPV-PWCDNGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALMKN GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|336124269|ref|YP_004566317.1| 23S rRNA m(5)C methyltransferase [Vibrio anguillarum 775]
gi|335341992|gb|AEH33275.1| Putative 23S rRNA m(5)C methyltransferase [Vibrio anguillarum 775]
Length = 492
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 73/159 (45%), Gaps = 25/159 (15%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
QRPL +IR NTLK Q V +G L P+ W G I S VP+G T E++
Sbjct: 52 QRPLRKSIRVNTLKISVDSFCQRAVEKGWALSPV-PWCNTGFWIEADESVVPLGNTAEHM 110
Query: 66 GGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSKE 107
G + +Q AS AP AA M+N GVL AN+ S
Sbjct: 111 AGLFYIQEASSMMPVSALFTGGESFNSVLDMAAAPGSKTTQIAACMENEGVLVANEFSAS 170
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS ++ DGR +G PE+ +AV+
Sbjct: 171 RVKVLHANIERCGVRNSALSNFDGRVFGGWLPEQFDAVL 209
>gi|407790923|ref|ZP_11138013.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Gallaecimonas
xiamenensis 3-C-1]
gi|407202207|gb|EKE72201.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Gallaecimonas
xiamenensis 3-C-1]
Length = 473
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL IR NTLK D A+ + +G L+ I W G + + +P+G P
Sbjct: 32 AACQRPLRRAIRVNTLKISVADFAEQMAQKGWQLETI-PWCDTGFWLQRPDEDLPLGNEP 90
Query: 63 EYLGGHYILQGASKY------WIC---APHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS W C AP + +AAA LM N G+L AN+
Sbjct: 91 EHLLGLFYVQEASSMLPPQALWHCLSEAPAKVLDVAAAPGSKTTQLAALMNNQGLLVANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N RLGV N + DG+ +G P+ +A++
Sbjct: 151 YSGSRVKVLHANLQRLGVSNCALCHFDGKVFGPALPDTFDAIL 193
>gi|82596191|ref|XP_726160.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481450|gb|EAA17725.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 647
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FLE + + + +RTNTLK R +L + L N+ + + W+ V + + +++ +G+
Sbjct: 244 FLEINNMPKEIHLRTNTLKITRTNLLKILKNKNIAIQDGPTWNNVDITLTDTSSNVGSLN 303
Query: 63 EYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
EYL G+YI+Q +S AP + KN G+++AND++K
Sbjct: 304 EYLYGYYIIQSSSSLIPVLELNVKENELVLDMCAAPGGKCTFICTIQKNKGIVYANDINK 363
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R KAI + R+G+ N +VT D + K
Sbjct: 364 LRCKAIEAHAARMGINNLIVTSFDSLKINK 393
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENE V+NY L+KRDV L+P ++ G G +YR+ +
Sbjct: 462 EENEQVINYILKKRDVNLLPIDINIGDPGITHYRKKQ 498
>gi|365539493|ref|ZP_09364668.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio ordalii ATCC
33509]
Length = 473
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 72/159 (45%), Gaps = 25/159 (15%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
QRPL +IR NTLK Q +G L P+ W G I S VP+G T E++
Sbjct: 33 QRPLRKSIRVNTLKISVDSFCQRAAEKGWVLSPV-PWCNTGFWIEADESVVPLGNTAEHM 91
Query: 66 GGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSKE 107
G + +Q AS AP AA M+N GVL AN+ S
Sbjct: 92 AGLFYIQEASSMMPVSALFTGGESFNSVLDMAAAPGSKTTQIAACMENKGVLVANEFSAS 151
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS ++ DGR +G PE+ +AV+
Sbjct: 152 RVKVLHANIERCGVRNSALSNFDGRVFGGWLPEQFDAVL 190
>gi|260772859|ref|ZP_05881775.1| ribosomal RNA small subunit methyltransferase F [Vibrio
metschnikovii CIP 69.14]
gi|260611998|gb|EEX37201.1| ribosomal RNA small subunit methyltransferase F [Vibrio
metschnikovii CIP 69.14]
Length = 473
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
QRPL +IR NTLK D ++G L+PI W + G I VP+G T E++
Sbjct: 33 QRPLRKSIRVNTLKISVADFQTRAADKGWYLEPI-PWCESGFWITADEEQVPLGNTAEHM 91
Query: 66 GGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
G + +Q AS AP AALM N GVL AN+ S
Sbjct: 92 AGLFYIQEASSMMPVSALFMQSGAPFEHVLDMAAAPGSKTTQIAALMDNQGVLIANEYSA 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ NS +T DG+ +G PE+ +AV+
Sbjct: 152 SRVKILHANIERCGIRNSALTNFDGQIFGGWLPEQFDAVL 191
>gi|297631959|emb|CBM41787.1| hypothetical protein [Simulium squamosum]
Length = 87
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 16/83 (19%)
Query: 52 YNSTVPIGATPEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKN 95
Y S VP+GATPEYL G+Y++QGAS +CA P + AALM+N
Sbjct: 5 YTSRVPLGATPEYLSGYYMIQGASSMLPVMTLDPQENERILDMCAAPGGKSSHIAALMRN 64
Query: 96 TGVLFANDVSKERSKAIVGNFHR 118
TG LF+ND+ ++R I+GNFHR
Sbjct: 65 TGTLFSNDLKRDRIHGIIGNFHR 87
>gi|258625050|ref|ZP_05719971.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603]
gi|258582683|gb|EEW07511.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603]
Length = 473
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK D Q + + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVADFCQRVAEKNWQLSPV-PWCENGFWIEADESQVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALTNFDGCVFGGWLPERFDAVL 190
>gi|415842427|ref|ZP_11523101.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
RN587/1]
gi|417283711|ref|ZP_12071008.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3003]
gi|425278078|ref|ZP_18669342.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ARS4.2123]
gi|323186840|gb|EFZ72159.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
RN587/1]
gi|386243654|gb|EII85387.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3003]
gi|408202863|gb|EKI27921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ARS4.2123]
Length = 479
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|433198395|ref|ZP_20382307.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE94]
gi|431723061|gb|ELJ87023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE94]
Length = 481
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|422381587|ref|ZP_16461751.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
57-2]
gi|432616799|ref|ZP_19852920.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE75]
gi|432732521|ref|ZP_19967354.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE45]
gi|432759605|ref|ZP_19994100.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE46]
gi|324007208|gb|EGB76427.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
57-2]
gi|431155039|gb|ELE55800.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE75]
gi|431275708|gb|ELF66735.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE45]
gi|431308778|gb|ELF97057.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE46]
Length = 481
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432441244|ref|ZP_19683585.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE189]
gi|432446364|ref|ZP_19688663.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE191]
gi|433013969|ref|ZP_20202331.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE104]
gi|433023598|ref|ZP_20211599.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE106]
gi|430967085|gb|ELC84447.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE189]
gi|430972637|gb|ELC89605.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE191]
gi|431531955|gb|ELI08610.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE104]
gi|431537249|gb|ELI13397.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE106]
Length = 481
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432801985|ref|ZP_20035966.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE84]
gi|431348962|gb|ELG35804.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE84]
Length = 481
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|215487048|ref|YP_002329479.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O127:H6 str. E2348/69]
gi|312967035|ref|ZP_07781253.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2362-75]
gi|417755879|ref|ZP_12403963.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2B]
gi|418997111|ref|ZP_13544711.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1A]
gi|419002230|ref|ZP_13549767.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1B]
gi|419007886|ref|ZP_13555326.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1C]
gi|419018495|ref|ZP_13565806.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1E]
gi|419024139|ref|ZP_13571370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2A]
gi|419029187|ref|ZP_13576359.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2C]
gi|419034631|ref|ZP_13581722.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2D]
gi|419039783|ref|ZP_13586824.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2E]
gi|254766863|sp|B7USL2.1|RSMF_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|215265120|emb|CAS09508.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|312288499|gb|EFR16401.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2362-75]
gi|377845728|gb|EHU10750.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1A]
gi|377846395|gb|EHU11407.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1C]
gi|377850161|gb|EHU15129.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1B]
gi|377862225|gb|EHU27038.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1E]
gi|377865620|gb|EHU30411.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2A]
gi|377876130|gb|EHU40738.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2B]
gi|377880225|gb|EHU44796.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2C]
gi|377881701|gb|EHU46258.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2D]
gi|377894034|gb|EHU58459.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC2E]
Length = 479
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|218558698|ref|YP_002391611.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S88]
gi|422749060|ref|ZP_16802972.1| NOL1/NOP2/sun family protein [Escherichia coli H252]
gi|146325691|sp|A1AC00.2|RSMF_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325694|sp|Q1RAV2.2|RSMF_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725333|sp|B7MBP2.1|RSMF_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218365467|emb|CAR03194.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
S88]
gi|323952336|gb|EGB48209.1| NOL1/NOP2/sun family protein [Escherichia coli H252]
Length = 479
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|91211057|ref|YP_541043.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UTI89]
gi|117623991|ref|YP_852904.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O1]
gi|237705787|ref|ZP_04536268.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
3_2_53FAA]
gi|386599631|ref|YP_006101137.1| NOL1/NOP2/sun family putative RNA methylase [Escherichia coli
IHE3034]
gi|386604201|ref|YP_006110501.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UM146]
gi|419946661|ref|ZP_14463052.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
HM605]
gi|422359647|ref|ZP_16440284.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
110-3]
gi|422838249|ref|ZP_16886222.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H397]
gi|432358165|ref|ZP_19601394.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE4]
gi|432362791|ref|ZP_19605962.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE5]
gi|432573862|ref|ZP_19810344.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE55]
gi|432588090|ref|ZP_19824446.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE58]
gi|432597812|ref|ZP_19834088.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE62]
gi|432754573|ref|ZP_19989124.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE22]
gi|432778703|ref|ZP_20012946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE59]
gi|432787649|ref|ZP_20021781.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE65]
gi|432821085|ref|ZP_20054777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE118]
gi|432827229|ref|ZP_20060881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE123]
gi|433005282|ref|ZP_20193712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE227]
gi|433007780|ref|ZP_20196198.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE229]
gi|433153900|ref|ZP_20338855.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE176]
gi|433163610|ref|ZP_20348355.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE179]
gi|433168731|ref|ZP_20353364.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE180]
gi|91072631|gb|ABE07512.1| hypothetical protein YebU [Escherichia coli UTI89]
gi|115513115|gb|ABJ01190.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|226900544|gb|EEH86803.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
3_2_53FAA]
gi|294490935|gb|ADE89691.1| NOL1/NOP2/sun family putative RNA methylase [Escherichia coli
IHE3034]
gi|307626685|gb|ADN70989.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UM146]
gi|315286546|gb|EFU45981.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
110-3]
gi|371614173|gb|EHO02658.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H397]
gi|388412369|gb|EIL72453.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
HM605]
gi|430878149|gb|ELC01581.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE4]
gi|430887330|gb|ELC10157.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE5]
gi|431108573|gb|ELE12545.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE55]
gi|431120423|gb|ELE23421.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE58]
gi|431130679|gb|ELE32762.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE62]
gi|431302774|gb|ELF91953.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE22]
gi|431326856|gb|ELG14201.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE59]
gi|431337366|gb|ELG24454.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE65]
gi|431367932|gb|ELG54400.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE118]
gi|431372478|gb|ELG58140.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE123]
gi|431515187|gb|ELH93014.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE227]
gi|431524313|gb|ELI01260.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE229]
gi|431675357|gb|ELJ41502.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE176]
gi|431688697|gb|ELJ54215.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE179]
gi|431689055|gb|ELJ54572.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE180]
Length = 481
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|422755171|ref|ZP_16808996.1| NOL1/NOP2/sun family protein [Escherichia coli H263]
gi|323956465|gb|EGB52207.1| NOL1/NOP2/sun family protein [Escherichia coli H263]
Length = 479
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|433323069|ref|ZP_20400439.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J96]
gi|432348237|gb|ELL42688.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J96]
Length = 479
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|331657881|ref|ZP_08358843.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA206]
gi|416337559|ref|ZP_11673922.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
WV_060327]
gi|419700627|ref|ZP_14228233.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SCI-07]
gi|320194451|gb|EFW69082.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
WV_060327]
gi|331056129|gb|EGI28138.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA206]
gi|380348403|gb|EIA36685.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SCI-07]
Length = 479
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|222156579|ref|YP_002556718.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
LF82]
gi|387617172|ref|YP_006120194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O83:H1 str. NRG 857C]
gi|222033584|emb|CAP76325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
LF82]
gi|312946433|gb|ADR27260.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O83:H1 str. NRG 857C]
Length = 481
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|422368318|ref|ZP_16448730.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
16-3]
gi|432898806|ref|ZP_20109498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE192]
gi|433028760|ref|ZP_20216622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE109]
gi|315299940|gb|EFU59178.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
16-3]
gi|431426458|gb|ELH08502.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE192]
gi|431543869|gb|ELI18835.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE109]
Length = 481
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|387829745|ref|YP_003349682.1| hypothetical protein ECSF_1692 [Escherichia coli SE15]
gi|432422093|ref|ZP_19664641.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE178]
gi|432500186|ref|ZP_19741946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE216]
gi|432558913|ref|ZP_19795591.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE49]
gi|432694577|ref|ZP_19929784.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE162]
gi|432710739|ref|ZP_19945801.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE6]
gi|432919253|ref|ZP_20123384.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE173]
gi|432927060|ref|ZP_20128600.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE175]
gi|432981237|ref|ZP_20170013.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE211]
gi|433096652|ref|ZP_20282849.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE139]
gi|433106016|ref|ZP_20292007.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE148]
gi|281178902|dbj|BAI55232.1| conserved hypothetical protein [Escherichia coli SE15]
gi|430944852|gb|ELC64941.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE178]
gi|431029056|gb|ELD42088.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE216]
gi|431091964|gb|ELD97672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE49]
gi|431234776|gb|ELF30170.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE162]
gi|431249531|gb|ELF43686.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE6]
gi|431444567|gb|ELH25589.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE173]
gi|431445287|gb|ELH26214.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE175]
gi|431491992|gb|ELH71595.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE211]
gi|431616913|gb|ELI85936.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE139]
gi|431629240|gb|ELI97606.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE148]
Length = 481
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432465820|ref|ZP_19707911.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE205]
gi|432583974|ref|ZP_19820373.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE57]
gi|432894650|ref|ZP_20106471.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE165]
gi|433072942|ref|ZP_20259607.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE129]
gi|433120372|ref|ZP_20306050.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE157]
gi|433183391|ref|ZP_20367656.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE85]
gi|430994301|gb|ELD10632.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE205]
gi|431116293|gb|ELE19741.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE57]
gi|431422563|gb|ELH04755.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE165]
gi|431589063|gb|ELI60282.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE129]
gi|431643467|gb|ELJ11159.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE157]
gi|431707863|gb|ELJ72392.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE85]
Length = 481
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|442604501|ref|ZP_21019346.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
Nissle 1917]
gi|146325693|sp|Q8FGS9.2|RSMF_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|441714758|emb|CCQ05323.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
Nissle 1917]
Length = 479
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|386619403|ref|YP_006138983.1| rRNA cytosine-C5-methyltransferase [Escherichia coli NA114]
gi|333969904|gb|AEG36709.1| rRNA cytosine-C5-methyltransferase [Escherichia coli NA114]
Length = 479
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|26248098|ref|NP_754138.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CFT073]
gi|227885738|ref|ZP_04003543.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
83972]
gi|300994213|ref|ZP_07180770.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
45-1]
gi|301050816|ref|ZP_07197670.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
185-1]
gi|306814337|ref|ZP_07448503.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
NC101]
gi|386629535|ref|YP_006149255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i2']
gi|386634455|ref|YP_006154174.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i14']
gi|386639360|ref|YP_006106158.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ABU 83972]
gi|422366946|ref|ZP_16447403.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
153-1]
gi|432381499|ref|ZP_19624444.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE15]
gi|432412048|ref|ZP_19654714.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE39]
gi|432431983|ref|ZP_19674415.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE187]
gi|432436000|ref|ZP_19678393.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE188]
gi|432456859|ref|ZP_19699046.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE201]
gi|432495893|ref|ZP_19737692.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE214]
gi|432504559|ref|ZP_19746289.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE220]
gi|432514066|ref|ZP_19751292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE224]
gi|432523934|ref|ZP_19761066.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE230]
gi|432568826|ref|ZP_19805344.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE53]
gi|432593049|ref|ZP_19829367.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE60]
gi|432607656|ref|ZP_19843845.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE67]
gi|432611568|ref|ZP_19847731.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE72]
gi|432646332|ref|ZP_19882122.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE86]
gi|432651267|ref|ZP_19887024.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE87]
gi|432655910|ref|ZP_19891616.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE93]
gi|432699186|ref|ZP_19934344.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE169]
gi|432745810|ref|ZP_19980479.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE43]
gi|432783711|ref|ZP_20017892.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE63]
gi|432844648|ref|ZP_20077547.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE141]
gi|432904998|ref|ZP_20113904.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE194]
gi|432938014|ref|ZP_20136391.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE183]
gi|432971989|ref|ZP_20160857.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE207]
gi|432978434|ref|ZP_20167256.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE209]
gi|432985518|ref|ZP_20174242.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE215]
gi|432995493|ref|ZP_20184104.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE218]
gi|433000069|ref|ZP_20188599.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE223]
gi|433038754|ref|ZP_20226358.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE113]
gi|433058217|ref|ZP_20245276.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE124]
gi|433082698|ref|ZP_20269163.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE133]
gi|433087364|ref|ZP_20273748.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE137]
gi|433101289|ref|ZP_20287386.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE145]
gi|433115682|ref|ZP_20301486.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE153]
gi|433125319|ref|ZP_20310894.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE160]
gi|433139382|ref|ZP_20324653.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE167]
gi|433144363|ref|ZP_20329515.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE168]
gi|433149330|ref|ZP_20334366.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE174]
gi|433188564|ref|ZP_20372667.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE88]
gi|433207930|ref|ZP_20391612.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE97]
gi|433212634|ref|ZP_20396237.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE99]
gi|26108501|gb|AAN80703.1|AE016761_278 Hypothetical protein yebU [Escherichia coli CFT073]
gi|227837311|gb|EEJ47777.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
83972]
gi|300297505|gb|EFJ53890.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
185-1]
gi|300406341|gb|EFJ89879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
45-1]
gi|305852496|gb|EFM52947.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
NC101]
gi|307553852|gb|ADN46627.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ABU 83972]
gi|315290364|gb|EFU49740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
153-1]
gi|355420434|gb|AER84631.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i2']
gi|355425354|gb|AER89550.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
'clone D i14']
gi|430908502|gb|ELC29895.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE15]
gi|430935274|gb|ELC55596.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE39]
gi|430953532|gb|ELC72430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE187]
gi|430964422|gb|ELC81869.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE188]
gi|430982741|gb|ELC99430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE201]
gi|431024436|gb|ELD37601.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE214]
gi|431039542|gb|ELD50362.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE220]
gi|431042664|gb|ELD53152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE224]
gi|431053036|gb|ELD62672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE230]
gi|431100677|gb|ELE05647.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE53]
gi|431128027|gb|ELE30319.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE60]
gi|431138754|gb|ELE40566.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE67]
gi|431148992|gb|ELE50265.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE72]
gi|431180369|gb|ELE80256.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE86]
gi|431191136|gb|ELE90521.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE87]
gi|431191968|gb|ELE91342.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE93]
gi|431244435|gb|ELF38743.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE169]
gi|431291947|gb|ELF82443.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE43]
gi|431329579|gb|ELG16865.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE63]
gi|431394975|gb|ELG78488.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE141]
gi|431433298|gb|ELH14970.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE194]
gi|431464098|gb|ELH44220.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE183]
gi|431480606|gb|ELH60325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE209]
gi|431482690|gb|ELH62392.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE207]
gi|431500955|gb|ELH79941.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE215]
gi|431507206|gb|ELH85492.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE218]
gi|431510086|gb|ELH88333.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE223]
gi|431552214|gb|ELI26176.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE113]
gi|431570860|gb|ELI43768.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE124]
gi|431603025|gb|ELI72452.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE133]
gi|431607084|gb|ELI76455.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE137]
gi|431620419|gb|ELI89296.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE145]
gi|431635208|gb|ELJ03423.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE153]
gi|431646704|gb|ELJ14196.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE160]
gi|431661760|gb|ELJ28572.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE167]
gi|431662909|gb|ELJ29677.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE168]
gi|431671994|gb|ELJ38267.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE174]
gi|431706607|gb|ELJ71177.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE88]
gi|431730697|gb|ELJ94259.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE97]
gi|431734916|gb|ELJ98292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE99]
Length = 481
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432397627|ref|ZP_19640408.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE25]
gi|432406843|ref|ZP_19649552.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE28]
gi|432723251|ref|ZP_19958171.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE17]
gi|432727838|ref|ZP_19962717.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE18]
gi|432741529|ref|ZP_19976248.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE23]
gi|432990839|ref|ZP_20179503.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE217]
gi|433111050|ref|ZP_20296915.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE150]
gi|430915731|gb|ELC36809.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE25]
gi|430929602|gb|ELC50111.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE28]
gi|431265805|gb|ELF57367.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE17]
gi|431273527|gb|ELF64601.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE18]
gi|431283220|gb|ELF74079.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE23]
gi|431494921|gb|ELH74507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE217]
gi|431628354|gb|ELI96730.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE150]
Length = 481
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|258622869|ref|ZP_05717885.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573]
gi|424809774|ref|ZP_18235147.1| NOL1/NOP2/sun family protein [Vibrio mimicus SX-4]
gi|258584808|gb|EEW09541.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573]
gi|342322871|gb|EGU18658.1| NOL1/NOP2/sun family protein [Vibrio mimicus SX-4]
Length = 473
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK D Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVADFCQRAAEKNWQLSPV-PWCENGFWIEADESQVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALTNFDGCVFGGWLPERFDAVL 190
>gi|218689772|ref|YP_002397984.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
ED1a]
gi|254766865|sp|B7MVW5.1|RSMF_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218427336|emb|CAR08231.2| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
ED1a]
Length = 479
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|425300602|ref|ZP_18690546.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
07798]
gi|408216749|gb|EKI41063.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
07798]
Length = 479
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|422835794|ref|ZP_16883846.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E101]
gi|371611567|gb|EHO00089.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E101]
Length = 506
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 55 DFLAAC--QRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 111
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 112 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 171
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 172 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 219
>gi|262171479|ref|ZP_06039157.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
MB-451]
gi|261892555|gb|EEY38541.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
MB-451]
Length = 473
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK D Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVADFCQRAAEKNWQLSPV-PWCENGFWIEADESQVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALTNFDGCVFGGWLPERFDAVL 190
>gi|419914047|ref|ZP_14432454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD1]
gi|388387762|gb|EIL49371.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD1]
Length = 481
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432387252|ref|ZP_19630143.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE16]
gi|430907234|gb|ELC28733.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE16]
Length = 499
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|329296317|ref|ZP_08253653.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Plautia stali
symbiont]
Length = 443
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL ++R NTLK D + G L PI W + GL I + ++P+G+ E+
Sbjct: 18 SQQPLRRSLRVNTLKISVEDFLTRVAGYGWQLTPI-PWCREGLWIARDDESLPLGSVAEH 76
Query: 65 LGGHYILQGASKY------WICAP--HRAAKLAAA----------LMKNTGVLFANDVSK 106
G + +Q AS + AP H+ +AAA LM+N G + AN+ S
Sbjct: 77 FSGLFYIQEASSMLPVSALFDAAPDAHQVMDVAAAPGSKTTQMAALMRNQGAILANEYSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE+ +A+V
Sbjct: 137 SRVKVLHANISRCGVSNVALTHFDGRVFGAALPEQFDAIV 176
>gi|432580580|ref|ZP_19817006.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE56]
gi|431105411|gb|ELE09746.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE56]
Length = 481
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N GV
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGV 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|417596964|ref|ZP_12247612.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
3030-1]
gi|345355276|gb|EGW87487.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
3030-1]
Length = 479
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I T+
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDTL 84
Query: 57 PIGATPEYLGGHYILQGASKYWIC--------APHRAAKLA----------AALMKNTGV 98
P+G+T E+L G + +Q AS AP R +A AA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|404375195|ref|ZP_10980383.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
1_1_43]
gi|404291256|gb|EJZ48146.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
1_1_43]
Length = 481
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N GV
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGV 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|339999675|ref|YP_004730558.1| rRNA (cytosine-C(5)-)-methyltransferase [Salmonella bongori NCTC
12419]
gi|339513036|emb|CCC30780.1| rRNA (cytosine-C(5)-)-methyltransferase [Salmonella bongori NCTC
12419]
Length = 513
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D G +L PI W K G I +T+P+G+T
Sbjct: 65 AACQRPLRRSIRINTLKISVTDFLTLTAPYGWSLTPI-PWCKEGFWIERDDEATLPLGST 123
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA M N G + AN+
Sbjct: 124 AEHLSGLFYIQEASSMLPVAALFADDTHPLRVMDMAAAPGSKTTQIAARMGNHGAILANE 183
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 184 FSASRVKVLHANLSRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|432661067|ref|ZP_19896713.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE111]
gi|431200183|gb|ELE98909.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE111]
Length = 481
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N GV
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGV 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|262165707|ref|ZP_06033444.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
VM223]
gi|262025423|gb|EEY44091.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
VM223]
Length = 492
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK D Q + L P+ W + G I S VP+G T E+
Sbjct: 51 CQRPLRKSIRVNTLKISVADFCQRAAEKNWQLSPV-PWCENGFWIEADESQVPLGNTAEH 109
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 110 MAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 169
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DG +G PE +AV+
Sbjct: 170 SRVKVLHANIERCGIRNTALTNFDGCVFGGWLPERFDAVL 209
>gi|417084775|ref|ZP_11952414.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
cloneA_i1]
gi|355351950|gb|EHG01137.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
cloneA_i1]
Length = 479
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWALTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|387612323|ref|YP_006115439.1| hypothetical protein ETEC_1868 [Escherichia coli ETEC H10407]
gi|419175464|ref|ZP_13719309.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7B]
gi|421774194|ref|ZP_16210807.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
AD30]
gi|422766401|ref|ZP_16820128.1| NOL1/NOP2/sun family protein [Escherichia coli E1520]
gi|309702059|emb|CBJ01373.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|323937093|gb|EGB33373.1| NOL1/NOP2/sun family protein [Escherichia coli E1520]
gi|378034995|gb|EHV97559.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7B]
gi|408460824|gb|EKJ84602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
AD30]
Length = 479
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N GV
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGV 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|110641953|ref|YP_669683.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 536]
gi|110343545|gb|ABG69782.1| hypothetical protein YebU [Escherichia coli 536]
Length = 481
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YN-STV 56
FL A QRPL +IR NTLK D Q G L PI W + G I YN +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|300982043|ref|ZP_07175862.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
200-1]
gi|422377099|ref|ZP_16457342.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
60-1]
gi|432471131|ref|ZP_19713178.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE206]
gi|432713542|ref|ZP_19948583.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE8]
gi|433077912|ref|ZP_20264463.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE131]
gi|300307345|gb|EFJ61865.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
200-1]
gi|324011607|gb|EGB80826.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
60-1]
gi|430998349|gb|ELD14590.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE206]
gi|431257345|gb|ELF50269.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE8]
gi|431597583|gb|ELI67489.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE131]
Length = 481
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YN-STV 56
FL A QRPL +IR NTLK D Q G L PI W + G I YN +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|191172977|ref|ZP_03034511.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
F11]
gi|190906688|gb|EDV66293.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
F11]
Length = 479
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YN-STV 56
FL A QRPL +IR NTLK D Q G L PI W + G I YN +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|170769367|ref|ZP_02903820.1| ribosomal RNA small subunit methyltransferase F [Escherichia
albertii TW07627]
gi|170121691|gb|EDS90622.1| ribosomal RNA small subunit methyltransferase F [Escherichia
albertii TW07627]
Length = 479
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVP 57
FL A QRPL +IR NTLK D Q G L PI W + G I S +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERSDDDALP 85
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADDNSPQRVMDVAAAPGSKTTQIAARMNNEGAI 145
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|146325692|sp|Q0TGZ7.2|RSMF_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YN-STV 56
FL A QRPL +IR NTLK D Q G L PI W + G I YN +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|343506087|ref|ZP_08743602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio ichthyoenteri
ATCC 700023]
gi|342804191|gb|EGU39521.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio ichthyoenteri
ATCC 700023]
Length = 459
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 73/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK + Q ++G L P+ W G I S VP+G T E+
Sbjct: 18 CQRPLRKSVRVNTLKLSVDEFKQRAASKGWQLFPV-PWCHEGFWIEADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA MKN GVL AN+ S
Sbjct: 77 MTGLFYIQEASSMMPVSALFKGDSNYDAVLDMAAAPGSKTTQVAACMKNDGVLIANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGVRNTALSNYDGRVFGGWLPEHFDAVL 176
>gi|406677066|ref|ZP_11084251.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC35]
gi|404625380|gb|EKB22197.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC35]
Length = 476
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATP 62
+ +RPL +IR NTLK D + G LDP+ W G + S TVP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKIAVSDFVALMQPLGWQLDPV-PWCDTGFWLTRSDETVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|407072061|ref|ZP_11102899.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cyclitrophicus
ZF14]
Length = 473
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK D ++G L+P+ W + G I S P+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEDFLVRAKDKGWELEPV-PWCETGFWITANESETPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPPSALFQSEEDYQAVLDTAAAPGSKTTQIAALMNNRGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNTALSNFDGRVFGGWLPEQFDAVL 190
>gi|375265555|ref|YP_005022998.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. EJY3]
gi|369840876|gb|AEX22020.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. EJY3]
Length = 478
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
S Q+PL +IR NTLK Q +G L P+ W + G I S VP+G T
Sbjct: 30 SSCQKPLRKSIRVNTLKISVEAFIQRAEEKGWKLSPV-PWCESGFWIDADESQVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNNEAYHAILDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|423206670|ref|ZP_17193226.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC34]
gi|404622222|gb|EKB19087.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AMC34]
Length = 476
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATP 62
+ +RPL +IR NTLK D + G LDP+ W G + S TVP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|416756017|ref|ZP_11862395.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323261753|gb|EGA45324.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
Length = 337
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDED 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|423209618|ref|ZP_17196172.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER397]
gi|404617476|gb|EKB14412.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER397]
Length = 476
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATP 62
+ +RPL +IR NTLK D + G LDP+ W G + S TVP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|417365271|ref|ZP_12137967.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
gi|353594928|gb|EHC52297.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|330829687|ref|YP_004392639.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
B565]
gi|328804823|gb|AEB50022.1| Ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
B565]
Length = 476
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATP 62
+ +RPL +IR NTLK D + G LDP+ W G + S TVP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVMALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|168259905|ref|ZP_02681878.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|205351006|gb|EDZ37637.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|423199869|ref|ZP_17186449.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER39]
gi|404621481|gb|EKB18368.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
AER39]
Length = 476
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATP 62
+ +RPL +IR NTLK D + G LDP+ W G + S TVP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKIAVSDFVALMEPLGWQLDPV-PWCDTGFWLTRSDETVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFASDKIKADGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|197248818|ref|YP_002146175.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|440764786|ref|ZP_20943810.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|440768205|ref|ZP_20947178.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|440774654|ref|ZP_20953541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|226725341|sp|B5F3P3.1|RSMF_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197212521|gb|ACH49918.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|436412877|gb|ELP10815.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|436415469|gb|ELP13388.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|436418085|gb|ELP15971.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|167553462|ref|ZP_02347211.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205322100|gb|EDZ09939.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|417348606|ref|ZP_12127516.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|452119959|ref|YP_007470207.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
gi|353575186|gb|EHC37993.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|451908963|gb|AGF80769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|445240234|ref|ZP_21407492.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|444891184|gb|ELY14454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 375
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 59 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 117
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 118 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 177
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 178 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 227
>gi|416651666|ref|ZP_11811183.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|418486671|ref|ZP_13055621.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|418493689|ref|ZP_13060151.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|418497648|ref|ZP_13064065.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|418502380|ref|ZP_13068752.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|418527679|ref|ZP_13093635.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|366063834|gb|EHN28045.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|366073117|gb|EHN37194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|366075405|gb|EHN39462.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|366075736|gb|EHN39788.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|366827413|gb|EHN54319.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|372204307|gb|EHP17835.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDED 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|257096813|sp|A9MV57.2|RSMF_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|168238457|ref|ZP_02663515.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|257096814|sp|B4TY18.2|RSMF_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197288700|gb|EDY28075.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|437819509|ref|ZP_20843060.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|435307536|gb|ELO82661.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|56413232|ref|YP_150307.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197362157|ref|YP_002141794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|81821455|sp|Q5PHN5.1|RSMF_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725345|sp|B5BHA6.1|RSMF_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|56127489|gb|AAV76995.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197093634|emb|CAR59104.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 479
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|262402183|ref|ZP_06078744.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586]
gi|262350965|gb|EEZ00098.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586]
Length = 473
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 74/160 (46%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKNWQLSPV-PWCENGFWIEADESQVPLGNTAEH 90
Query: 65 LGGHYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS + C AP AALM+N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGDAEYDCVLDMAAAPGSKTTQMAALMENQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALTNFDGCVFGGWLPERFDAVL 190
>gi|438128973|ref|ZP_20873244.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|434941950|gb|ELL48318.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
Length = 507
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|436637313|ref|ZP_20516010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|434957668|gb|ELL51296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
Length = 493
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|417415097|ref|ZP_12158852.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|353623703|gb|EHC72916.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
Length = 492
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 37 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 95
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 96 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 155
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 156 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 205
>gi|416570776|ref|ZP_11766271.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|363575229|gb|EHL59087.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
Length = 513
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDED 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|445181961|ref|ZP_21398453.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|444871448|gb|ELX95875.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
Length = 413
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|417390446|ref|ZP_12153937.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Minnesota str. A4-603]
gi|417457914|ref|ZP_12163918.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|353618779|gb|EHC69362.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Minnesota str. A4-603]
gi|353633546|gb|EHC80324.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
Length = 479
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|416491776|ref|ZP_11727287.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322649242|gb|EFY45680.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
Length = 436
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDED 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|416421608|ref|ZP_11689606.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|416433683|ref|ZP_11697106.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|416436504|ref|ZP_11698306.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|416448964|ref|ZP_11706615.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|416451132|ref|ZP_11708025.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|416456454|ref|ZP_11711458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|416468962|ref|ZP_11718256.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|416481673|ref|ZP_11723407.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416498117|ref|ZP_11730043.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416504757|ref|ZP_11733339.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|416512103|ref|ZP_11737647.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|416541678|ref|ZP_11751110.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|416562527|ref|ZP_11762227.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|416579253|ref|ZP_11771111.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|416585123|ref|ZP_11774676.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|416589989|ref|ZP_11777505.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|416601182|ref|ZP_11784846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|416604407|ref|ZP_11786167.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|416612082|ref|ZP_11791261.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|416619450|ref|ZP_11795112.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|416629427|ref|ZP_11800091.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|416639198|ref|ZP_11804405.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|416666375|ref|ZP_11817449.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|416680836|ref|ZP_11823447.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|416698498|ref|ZP_11828429.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|416704964|ref|ZP_11830576.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|416710950|ref|ZP_11834908.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|416716817|ref|ZP_11839109.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|416721953|ref|ZP_11843012.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|416733534|ref|ZP_11850532.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|416737341|ref|ZP_11852573.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|416762252|ref|ZP_11866248.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|416771620|ref|ZP_11872855.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|418484129|ref|ZP_13053133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|418509461|ref|ZP_13075755.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|322616846|gb|EFY13754.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618085|gb|EFY14977.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625756|gb|EFY22575.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626206|gb|EFY23016.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633812|gb|EFY30552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322638966|gb|EFY35659.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322640784|gb|EFY37434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644171|gb|EFY40716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322655402|gb|EFY51710.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322660842|gb|EFY57073.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322662861|gb|EFY59068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668045|gb|EFY64204.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674193|gb|EFY70287.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322675452|gb|EFY71526.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322683133|gb|EFY79149.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686827|gb|EFY82805.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323195281|gb|EFZ80461.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199174|gb|EFZ84269.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203806|gb|EFZ88825.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323217413|gb|EGA02132.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323220550|gb|EGA05001.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323224660|gb|EGA08933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323231436|gb|EGA15549.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235876|gb|EGA19955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240445|gb|EGA24488.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323245338|gb|EGA29338.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323246705|gb|EGA30677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323253560|gb|EGA37388.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323266811|gb|EGA50297.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269017|gb|EGA52473.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|363557205|gb|EHL41412.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|363570037|gb|EHL53976.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|363572858|gb|EHL56746.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|366059914|gb|EHN24181.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|366078168|gb|EHN42173.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDED 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|418817852|ref|ZP_13373336.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|418820762|ref|ZP_13376194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|418826519|ref|ZP_13381733.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
gi|257096812|sp|B4SV89.2|RSMF_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|392787391|gb|EJA43933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|392792322|gb|EJA48786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|392806198|gb|EJA62312.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
Length = 479
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|417341295|ref|ZP_12122396.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|357958077|gb|EHJ82843.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|168241450|ref|ZP_02666382.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|198244837|ref|YP_002215291.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205352487|ref|YP_002226288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207856644|ref|YP_002243295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|375118769|ref|ZP_09763936.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|419730494|ref|ZP_14257440.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|419732180|ref|ZP_14259086.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|419739099|ref|ZP_14265853.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|419743839|ref|ZP_14270502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|419750189|ref|ZP_14276655.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|421358704|ref|ZP_15809001.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|421362674|ref|ZP_15812926.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|421367874|ref|ZP_15818067.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|421370459|ref|ZP_15820624.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|421377947|ref|ZP_15828036.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|421382555|ref|ZP_15832601.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|421387717|ref|ZP_15837716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|421391820|ref|ZP_15841786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|421394976|ref|ZP_15844915.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|421401240|ref|ZP_15851116.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|421403158|ref|ZP_15853012.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|421410525|ref|ZP_15860306.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|421412790|ref|ZP_15862544.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|421416783|ref|ZP_15866502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|421421778|ref|ZP_15871446.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|421425947|ref|ZP_15875581.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|421431915|ref|ZP_15881492.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|421436669|ref|ZP_15886196.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|421441269|ref|ZP_15890739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|421446794|ref|ZP_15896206.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|421447903|ref|ZP_15897299.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|421570899|ref|ZP_16016582.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|421574764|ref|ZP_16020385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|421579629|ref|ZP_16025191.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|421583002|ref|ZP_16028531.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|436675697|ref|ZP_20517622.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|436799090|ref|ZP_20523644.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|436811341|ref|ZP_20530221.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436815713|ref|ZP_20533264.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436847043|ref|ZP_20539675.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851305|ref|ZP_20541904.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858070|ref|ZP_20546590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865245|ref|ZP_20551212.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875582|ref|ZP_20557489.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436883295|ref|ZP_20561724.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436887844|ref|ZP_20564173.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896366|ref|ZP_20569122.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436906345|ref|ZP_20575191.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911707|ref|ZP_20577536.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436921183|ref|ZP_20583654.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930435|ref|ZP_20588660.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436935659|ref|ZP_20591099.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942848|ref|ZP_20595794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436951658|ref|ZP_20600713.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436964633|ref|ZP_20606269.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436971392|ref|ZP_20609785.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436985461|ref|ZP_20614981.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436991571|ref|ZP_20617582.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437012214|ref|ZP_20624727.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437020815|ref|ZP_20627626.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437029894|ref|ZP_20631076.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437042468|ref|ZP_20636059.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437052368|ref|ZP_20641791.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437058179|ref|ZP_20645026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437069159|ref|ZP_20651114.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437075870|ref|ZP_20654233.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086568|ref|ZP_20660577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437095457|ref|ZP_20664561.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|437116276|ref|ZP_20669624.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|437125918|ref|ZP_20674187.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|437134593|ref|ZP_20679017.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|437139835|ref|ZP_20682099.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|437147025|ref|ZP_20686577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|437155317|ref|ZP_20691536.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|437163123|ref|ZP_20696477.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|437167307|ref|ZP_20698625.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|437177260|ref|ZP_20703740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|437186348|ref|ZP_20709577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|437250976|ref|ZP_20715290.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|437261235|ref|ZP_20718305.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|437265834|ref|ZP_20720649.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|437282063|ref|ZP_20729064.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|437286500|ref|ZP_20730154.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|437308349|ref|ZP_20735390.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|437331044|ref|ZP_20741872.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|437343962|ref|ZP_20745976.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|437425005|ref|ZP_20755260.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|437435337|ref|ZP_20756423.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|437478444|ref|ZP_20767457.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|437497853|ref|ZP_20773587.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|437500916|ref|ZP_20774218.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|437542848|ref|ZP_20782677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|437553250|ref|ZP_20783892.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|437575136|ref|ZP_20789932.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|437591955|ref|ZP_20794933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|437601401|ref|ZP_20797645.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|437617172|ref|ZP_20802808.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|437657855|ref|ZP_20811290.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|437670137|ref|ZP_20815590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|437695445|ref|ZP_20822086.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|437723730|ref|ZP_20829411.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|437763753|ref|ZP_20834970.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|437813442|ref|ZP_20841844.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|437890591|ref|ZP_20849255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|438004701|ref|ZP_20854248.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|438090156|ref|ZP_20860458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|438101114|ref|ZP_20864065.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|438112375|ref|ZP_20868972.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|445129011|ref|ZP_21380559.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|445141337|ref|ZP_21385359.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|445155292|ref|ZP_21392256.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|445173488|ref|ZP_21396711.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|445221416|ref|ZP_21403107.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|445330961|ref|ZP_21414010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|445349267|ref|ZP_21420046.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|445363390|ref|ZP_21424558.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|226725342|sp|B5FTI4.1|RSMF_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725343|sp|B5R2S1.1|RSMF_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725344|sp|B5R8V2.1|RSMF_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096811|sp|B4TKI0.2|RSMF_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197939353|gb|ACH76686.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205272268|emb|CAR37145.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205339225|gb|EDZ25989.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|206708447|emb|CAR32768.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326623036|gb|EGE29381.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|381294502|gb|EIC35641.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|381300433|gb|EIC41495.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|381303029|gb|EIC44058.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|381307487|gb|EIC48341.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|381311404|gb|EIC52223.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|395986394|gb|EJH95558.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|395987144|gb|EJH96307.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|395990498|gb|EJH99629.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|395997252|gb|EJI06293.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|395997663|gb|EJI06703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|396006542|gb|EJI15505.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|396008542|gb|EJI17476.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|396010783|gb|EJI19695.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|396013713|gb|EJI22600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|396021305|gb|EJI30131.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|396022658|gb|EJI31471.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|396030189|gb|EJI38924.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|396039878|gb|EJI48502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|396041093|gb|EJI49716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|396044960|gb|EJI53555.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|396051166|gb|EJI59684.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|396053011|gb|EJI61516.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|396055800|gb|EJI64277.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|396062376|gb|EJI70789.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|396064872|gb|EJI73255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|396074200|gb|EJI82491.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|402521104|gb|EJW28442.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|402522534|gb|EJW29856.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|402524964|gb|EJW32261.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|402532468|gb|EJW39660.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|434960150|gb|ELL53557.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|434963972|gb|ELL56994.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434973829|gb|ELL66217.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434977207|gb|ELL69356.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434986607|gb|ELL78258.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990222|gb|ELL81772.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434995173|gb|ELL86490.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996280|gb|ELL87596.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435001740|gb|ELL92829.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435009211|gb|ELM00003.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|435009554|gb|ELM00340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435014922|gb|ELM05479.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435016255|gb|ELM06781.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435025952|gb|ELM16083.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435027305|gb|ELM17434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032090|gb|ELM22034.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435038497|gb|ELM28278.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435043047|gb|ELM32764.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435048490|gb|ELM38055.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435052125|gb|ELM41627.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435057681|gb|ELM47050.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062301|gb|ELM51483.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435063534|gb|ELM52682.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435068148|gb|ELM57177.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435079443|gb|ELM68154.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435082928|gb|ELM71539.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435084393|gb|ELM72979.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435090968|gb|ELM79369.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435092577|gb|ELM80932.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435093992|gb|ELM82331.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435102714|gb|ELM90817.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435105167|gb|ELM93204.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435109834|gb|ELM97780.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|435114107|gb|ELN01925.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|435116999|gb|ELN04711.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|435120072|gb|ELN07674.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|435131240|gb|ELN18467.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|435134655|gb|ELN21781.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|435138185|gb|ELN25212.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|435142373|gb|ELN29284.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|435151929|gb|ELN38568.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|435154940|gb|ELN41498.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|435158723|gb|ELN45102.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|435162727|gb|ELN48887.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|435163691|gb|ELN49827.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|435168681|gb|ELN54513.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|435177198|gb|ELN62530.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|435184397|gb|ELN69326.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|435185944|gb|ELN70800.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|435188992|gb|ELN73640.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|435191016|gb|ELN75583.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|435200042|gb|ELN84065.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|435213832|gb|ELN96698.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|435221263|gb|ELO03536.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|435224938|gb|ELO06877.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|435235250|gb|ELO16071.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|435239195|gb|ELO19802.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|435244897|gb|ELO25004.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|435245101|gb|ELO25188.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|435253565|gb|ELO33035.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|435260937|gb|ELO40099.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|435261171|gb|ELO40332.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|435271051|gb|ELO49531.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|435277721|gb|ELO55653.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|435281726|gb|ELO59381.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|435293497|gb|ELO70190.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|435296672|gb|ELO73035.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|435308419|gb|ELO83372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|435316727|gb|ELO89840.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|435324686|gb|ELO96614.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|435327462|gb|ELO99153.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435330453|gb|ELP01719.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|435335571|gb|ELP05769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|444849341|gb|ELX74454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|444851039|gb|ELX76134.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|444854321|gb|ELX79385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|444859882|gb|ELX84816.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|444870212|gb|ELX94738.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|444875765|gb|ELX99962.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|444877685|gb|ELY01824.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|444883707|gb|ELY07577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
Length = 479
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|437462514|ref|ZP_20762665.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|437712007|ref|ZP_20826999.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|435219180|gb|ELO01543.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|435287902|gb|ELO65007.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
Length = 309
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|16765191|ref|NP_460806.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|374980864|ref|ZP_09722194.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378445253|ref|YP_005232885.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378450437|ref|YP_005237796.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|378699726|ref|YP_005181683.1| hypothetical protein SL1344_1779 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378989190|ref|YP_005252354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|383496537|ref|YP_005397226.1| hypothetical protein UMN798_1947 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422026030|ref|ZP_16372447.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|422031067|ref|ZP_16377248.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|427550200|ref|ZP_18927755.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|427566070|ref|ZP_18932470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|427586168|ref|ZP_18937259.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|427609556|ref|ZP_18942124.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|427633615|ref|ZP_18947020.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|427656081|ref|ZP_18951785.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|427661227|ref|ZP_18956696.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|427668448|ref|ZP_18961496.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|427766659|ref|ZP_18966664.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|81522670|sp|Q8ZNZ2.1|RSMF_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|16420383|gb|AAL20765.1| putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|261247032|emb|CBG24849.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993815|gb|ACY88700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301158374|emb|CBW17873.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|321224484|gb|EFX49547.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|332988737|gb|AEF07720.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|380463358|gb|AFD58761.1| hypothetical protein UMN798_1947 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414018770|gb|EKT02408.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|414019248|gb|EKT02867.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|414021238|gb|EKT04794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|414032936|gb|EKT15919.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|414034823|gb|EKT17739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|414037769|gb|EKT20518.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|414047745|gb|EKT30013.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|414049237|gb|EKT31456.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|414053550|gb|EKT35538.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|414059829|gb|EKT41375.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|414065300|gb|EKT46067.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
Length = 479
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|62128049|gb|AAX65752.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GTILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|418859954|ref|ZP_13414541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|392828320|gb|EJA84015.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|213419894|ref|ZP_03352960.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 371
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|162139578|ref|YP_216833.2| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|224583660|ref|YP_002637458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|375114743|ref|ZP_09759913.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|146325698|sp|Q57NF9.2|RSMF_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|254766867|sp|C0Q2Y5.1|RSMF_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|224468187|gb|ACN46017.1| hypothetical protein SPC_1879 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714889|gb|EFZ06460.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 479
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GTILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|418789154|ref|ZP_13344942.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|418794654|ref|ZP_13350372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|418797012|ref|ZP_13352703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|392760868|gb|EJA17699.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|392761114|gb|EJA17944.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|392770385|gb|EJA27113.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|421885200|ref|ZP_16316401.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|379985262|emb|CCF88674.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
Length = 464
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 9 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 67
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 68 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 127
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 128 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 177
>gi|417325870|ref|ZP_12111720.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|353574832|gb|EHC37748.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|417372851|ref|ZP_12143043.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
gi|353604188|gb|EHC59045.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
Length = 460
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 5 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 63
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 64 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 123
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 124 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 173
>gi|417333243|ref|ZP_12116865.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Alachua str. R6-377]
gi|353579208|gb|EHC40821.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Alachua str. R6-377]
Length = 464
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 9 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 67
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 68 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 127
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 128 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 177
>gi|375001008|ref|ZP_09725348.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
gi|353075696|gb|EHB41456.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNH 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|194734489|ref|YP_002114882.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|194709991|gb|ACF89212.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|432850818|ref|ZP_20081513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE144]
gi|431400140|gb|ELG83522.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE144]
Length = 481
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|378955354|ref|YP_005212841.1| hypothetical protein SPUL_1667 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357205965|gb|AET54011.1| hypothetical protein SPUL_1667 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|375123295|ref|ZP_09768459.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|326627545|gb|EGE33888.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|204931095|ref|ZP_03221921.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|204320139|gb|EDZ05344.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|194444109|ref|YP_002041104.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|200391079|ref|ZP_03217690.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|417538327|ref|ZP_12190956.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|418809386|ref|ZP_13364938.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|418813541|ref|ZP_13369062.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|418833521|ref|ZP_13388444.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|418836737|ref|ZP_13391621.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|418840489|ref|ZP_13395318.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|418845061|ref|ZP_13399847.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|418850524|ref|ZP_13405240.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|418852355|ref|ZP_13407057.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|418863417|ref|ZP_13417955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|418867034|ref|ZP_13421495.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|194402772|gb|ACF62994.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|199603524|gb|EDZ02070.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|353666779|gb|EHD04483.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|392773471|gb|EJA30167.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|392774767|gb|EJA31462.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|392795355|gb|EJA51727.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|392801098|gb|EJA57328.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|392810979|gb|EJA66991.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|392813870|gb|EJA69834.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|392818374|gb|EJA74258.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|392829571|gb|EJA85241.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|392833285|gb|EJA88900.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|392840146|gb|EJA95684.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|238912085|ref|ZP_04655922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|213161347|ref|ZP_03347057.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213424193|ref|ZP_03357058.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|378959186|ref|YP_005216672.1| RNA methylase, NOL1/NOP2/sun [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|374353058|gb|AEZ44819.1| RNA methylase, NOL1/NOP2/sun [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|205359812|ref|ZP_03224420.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|409249815|ref|YP_006885630.1| Ribosomal RNA small subunit methyltransferase F rRNA
(cytosine-C(5)-)-methyltransferase rsmF; 16S rRNA
m5C1407 methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|205342570|gb|EDZ29334.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|320085643|emb|CBY95421.1| Ribosomal RNA small subunit methyltransferase F rRNA
(cytosine-C(5)-)-methyltransferase rsmF; 16S rRNA
m5C1407 methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|205358008|ref|ZP_02574896.2| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|378984412|ref|YP_005247567.1| 16S rRNA methyltransferase F [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|379701027|ref|YP_005242755.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|205328183|gb|EDZ14947.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|312912840|dbj|BAJ36814.1| 16S rRNA methyltransferase F [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|323130126|gb|ADX17556.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|16760738|ref|NP_456355.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29141504|ref|NP_804846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|81853268|sp|Q8Z662.1|RSMF_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|25511826|pir||AB0729 conserved hypothetical protein STY1981 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503035|emb|CAD05532.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137131|gb|AAO68695.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 479
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|416535199|ref|ZP_11747563.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|416550307|ref|ZP_11755890.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|417357582|ref|ZP_12132689.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417378938|ref|ZP_12147446.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|417530088|ref|ZP_12185526.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Urbana str. R8-2977]
gi|353593695|gb|EHC51389.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353618957|gb|EHC69497.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|353666686|gb|EHD04417.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Urbana str. R8-2977]
gi|363566341|gb|EHL50358.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|363568740|gb|EHL52716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|197264965|ref|ZP_03165039.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197243220|gb|EDY25840.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|213615624|ref|ZP_03371450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 418
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|161613635|ref|YP_001587600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|417510243|ref|ZP_12175208.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|161362999|gb|ABX66767.1| hypothetical protein SPAB_01359 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|353646917|gb|EHC90184.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
Length = 513
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|195873256|ref|ZP_02696581.2| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|418762923|ref|ZP_13319048.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|418765791|ref|ZP_13321872.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|418772500|ref|ZP_13328504.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|418777456|ref|ZP_13333385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|418778951|ref|ZP_13334858.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|418785926|ref|ZP_13341752.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|418802213|ref|ZP_13357841.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|419788328|ref|ZP_14314019.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|419793714|ref|ZP_14319332.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|195634470|gb|EDX52822.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|392616640|gb|EIW99072.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|392617842|gb|EIX00257.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|392732614|gb|EIZ89825.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|392735257|gb|EIZ92434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|392739544|gb|EIZ96677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|392743915|gb|EJA00977.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|392750798|gb|EJA07758.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|392754401|gb|EJA11318.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|392778055|gb|EJA34736.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
Length = 513
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|289826537|ref|ZP_06545617.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 510
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|213858028|ref|ZP_03384999.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 261
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|194449925|ref|YP_002045895.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|386591678|ref|YP_006088078.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|194408229|gb|ACF68448.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|383798722|gb|AFH45804.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
Length = 513
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|418513375|ref|ZP_13079606.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|366082272|gb|EHN46209.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
Length = 513
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|437650123|ref|ZP_20809752.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|435267930|gb|ELO46567.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
Length = 462
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 7 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 65
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 66 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 125
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 126 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 175
>gi|417474637|ref|ZP_12169677.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353646786|gb|EHC90100.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
Length = 513
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|343514433|ref|ZP_08751505.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. N418]
gi|342800206|gb|EGU35748.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sp. N418]
Length = 459
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK + Q ++G L P+ W G I S VP+G T E+
Sbjct: 18 CQRPLRKSVRVNTLKLSVEEFKQRAASKGWQLYPV-PWCDEGFWIEADESVVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA M N GVL AN+ S
Sbjct: 77 MTGLFYIQEASSMMPVSALFMGEASYNAVLDMAAAPGSKTTQVAACMNNDGVLIANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGVRNTALSNYDGRVFGAWLPEHFDAVL 176
>gi|366157844|ref|ZP_09457706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
TW09308]
Length = 479
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L P+ W K G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPV-PWCKEGFWIERDDEEAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAASMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|417138330|ref|ZP_11982063.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0259]
gi|417308301|ref|ZP_12095154.1| Ribosomal RNA small subunit methyltransferase F
(RRNA(Cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli PCN033]
gi|338770151|gb|EGP24918.1| Ribosomal RNA small subunit methyltransferase F
(RRNA(Cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli PCN033]
gi|386158315|gb|EIH14652.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0259]
Length = 479
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI WS+ G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWSEGGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|323492622|ref|ZP_08097766.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis
LMG 20546]
gi|323312997|gb|EGA66117.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis
LMG 20546]
Length = 474
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
QRPL +IR NTLK + Q +G L+P+ W + G I S VP+G + E++
Sbjct: 33 QRPLRKSIRVNTLKVTIEEFTQRAQQKGWQLEPV-PWCEEGFWIEADESEVPLGNSAEHM 91
Query: 66 GGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
G + +Q AS AP A+ M N GVL AN+ S
Sbjct: 92 SGLFYIQEASSMMPVSALFLDQQQEFTSVLDMAAAPGSKTTQIASKMSNQGVLVANEFSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 152 SRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 191
>gi|417952066|ref|ZP_12595140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
ATCC 33789]
gi|342803115|gb|EGU38495.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
ATCC 33789]
Length = 473
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK D ++G L+P+ W + G I + P+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEDFLVRAKDKGWELEPV-PWCETGFWITADETEAPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPPSALFQGEENYQAVLDTAAAPGSKTTQIAALMNNCGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|419013668|ref|ZP_13561023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1D]
gi|377858652|gb|EHU23491.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC1D]
Length = 479
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAENLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|218705334|ref|YP_002412853.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
UMN026]
gi|293405330|ref|ZP_06649322.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1412]
gi|298380972|ref|ZP_06990571.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1302]
gi|331663326|ref|ZP_08364236.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA143]
gi|417586712|ref|ZP_12237484.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_C165-02]
gi|226725338|sp|B7NBI3.1|RSMF_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218432431|emb|CAR13323.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
UMN026]
gi|291427538|gb|EFF00565.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1412]
gi|298278414|gb|EFI19928.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FVEC1302]
gi|331059125|gb|EGI31102.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA143]
gi|345338215|gb|EGW70646.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_C165-02]
Length = 479
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 192
>gi|450189481|ref|ZP_21890544.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SEPT362]
gi|449321424|gb|EMD11436.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SEPT362]
Length = 479
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|432543346|ref|ZP_19780195.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE236]
gi|432548836|ref|ZP_19785610.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE237]
gi|432622033|ref|ZP_19858067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE76]
gi|432815529|ref|ZP_20049314.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE115]
gi|431074945|gb|ELD82482.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE236]
gi|431080656|gb|ELD87451.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE237]
gi|431159732|gb|ELE60276.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE76]
gi|431364585|gb|ELG51116.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE115]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|422335244|ref|ZP_16416245.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
4_1_47FAA]
gi|373243729|gb|EHP63228.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
4_1_47FAA]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 194
>gi|254508779|ref|ZP_05120891.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C
[Vibrio parahaemolyticus 16]
gi|219548299|gb|EED25312.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C
[Vibrio parahaemolyticus 16]
Length = 474
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
QRPL +IR NTLKT D +G L P+ W G I S VP+G T E++
Sbjct: 33 QRPLRKSIRVNTLKTTVADFLTRANEKGWQLYPV-PWCDEGFWIEADESVVPLGNTAEHM 91
Query: 66 GGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
G + +Q AS AP AA M N GVL AN+ S
Sbjct: 92 SGLFYIQEASSMMPVSALFKSDTDVYDTVLDMAAAPGSKTTQIAAKMANEGVLVANEYSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE+ EAV+
Sbjct: 152 SRVKVLHANIERCGVRNAALSNYDGRVFGGWLPEQFEAVL 191
>gi|417689821|ref|ZP_12339049.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
5216-82]
gi|332089959|gb|EGI95059.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
5216-82]
Length = 325
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 85
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAI 145
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|387607453|ref|YP_006096309.1| hypothetical protein EC042_2000 [Escherichia coli 042]
gi|284921753|emb|CBG34826.1| conserved hypothetical protein [Escherichia coli 042]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432793038|ref|ZP_20027123.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE78]
gi|432798995|ref|ZP_20033018.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE79]
gi|431339782|gb|ELG26836.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE78]
gi|431343862|gb|ELG30818.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE79]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 194
>gi|331653241|ref|ZP_08354246.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M718]
gi|331049339|gb|EGI21411.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M718]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|86148632|ref|ZP_01066914.1| Sun/nucleolar protein family protein [Vibrio sp. MED222]
gi|85833588|gb|EAQ51764.1| Sun/nucleolar protein family protein [Vibrio sp. MED222]
Length = 473
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK D +G L+P+ W + G I S P+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPV-PWCETGFWITADESEAPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPPSALFQGEADYQAVLDTAAAPGSKTTQIAALMNNHGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|300899079|ref|ZP_07117364.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
198-1]
gi|419932391|ref|ZP_14449706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
576-1]
gi|432353745|ref|ZP_19597019.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE2]
gi|432402098|ref|ZP_19644851.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE26]
gi|432426269|ref|ZP_19668774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE181]
gi|432460888|ref|ZP_19703039.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE204]
gi|432476011|ref|ZP_19718011.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE208]
gi|432489442|ref|ZP_19731323.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE213]
gi|432517899|ref|ZP_19755091.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE228]
gi|432537997|ref|ZP_19774900.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE235]
gi|432631569|ref|ZP_19867498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE80]
gi|432641214|ref|ZP_19877051.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE83]
gi|432666201|ref|ZP_19901783.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE116]
gi|432770799|ref|ZP_20005143.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE50]
gi|432774921|ref|ZP_20009203.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE54]
gi|432839457|ref|ZP_20072944.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE140]
gi|432886774|ref|ZP_20100863.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE158]
gi|432912873|ref|ZP_20118683.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE190]
gi|432961853|ref|ZP_20151643.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE202]
gi|433018793|ref|ZP_20207038.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE105]
gi|433053337|ref|ZP_20240532.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE122]
gi|433063227|ref|ZP_20250160.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE125]
gi|433068116|ref|ZP_20254917.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE128]
gi|433158865|ref|ZP_20343712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE177]
gi|433178476|ref|ZP_20362888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE82]
gi|433203410|ref|ZP_20387191.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE95]
gi|300357288|gb|EFJ73158.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
198-1]
gi|388417411|gb|EIL77255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
576-1]
gi|430875986|gb|ELB99507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE2]
gi|430926928|gb|ELC47515.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE26]
gi|430956609|gb|ELC75283.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE181]
gi|430989601|gb|ELD06055.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE204]
gi|431005952|gb|ELD20959.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE208]
gi|431021478|gb|ELD34801.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE213]
gi|431051947|gb|ELD61609.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE228]
gi|431069911|gb|ELD78231.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE235]
gi|431171037|gb|ELE71218.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE80]
gi|431183479|gb|ELE83295.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE83]
gi|431201576|gb|ELF00273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE116]
gi|431315999|gb|ELG03898.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE50]
gi|431318636|gb|ELG06331.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE54]
gi|431389609|gb|ELG73320.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE140]
gi|431416819|gb|ELG99290.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE158]
gi|431440302|gb|ELH21631.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE190]
gi|431474809|gb|ELH54615.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE202]
gi|431532856|gb|ELI09360.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE105]
gi|431571733|gb|ELI44603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE122]
gi|431583061|gb|ELI55071.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE125]
gi|431585808|gb|ELI57755.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE128]
gi|431678899|gb|ELJ44817.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE177]
gi|431704840|gb|ELJ69465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE82]
gi|431722478|gb|ELJ86444.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE95]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 194
>gi|218709402|ref|YP_002417023.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
LGP32]
gi|254766870|sp|B7VNJ8.1|RSMF_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218322421|emb|CAV18574.1| NOL1/NOP2/sun family protein [Vibrio splendidus LGP32]
Length = 473
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK D +G L+P+ W + G I S P+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPV-PWCETGFWITADESEAPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPPSALFQGEADYQAVLDTAAAPGSKTTQIAALMNNRGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|84394273|ref|ZP_00992999.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01]
gi|84375112|gb|EAP92033.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01]
Length = 473
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK D +G L+P+ W + G I S P+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPV-PWCETGFWITADESEAPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPPSALFQGEVDYQAVLDTAAAPGSKTTQIAALMNNRGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|15668197|ref|NP_246989.1| proliferating cell nuclear antigen [Methanocaldococcus jannaschii
DSM 2661]
gi|2500953|sp|Q60343.1|TRM4_METJA RecName: Full=tRNA (cytosine(48)-C(5))-methyltransferase; AltName:
Full=aTrm4; AltName: Full=tRNA
(cytosine-5-)-methyltransferase Trm4
gi|299856663|pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
gi|299856664|pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
gi|299856676|pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
gi|1592257|gb|AAB98007.1| proliferating-cell nucleolar antigen, FMU/NOL1/NOP2 family
[Methanocaldococcus jannaschii DSM 2661]
Length = 274
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 18/136 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L + L N+GV L+ + + S IG+TPEYL G+Y+ Q
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LMKN G + A ++SK R+KA+ N +R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 119 LGVINSVVTCLDGRQY 134
+GV+N+++ D R+Y
Sbjct: 131 MGVLNTIIINADMRKY 146
>gi|389840619|ref|YP_006342703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
ES15]
gi|387851095|gb|AFJ99192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
ES15]
Length = 480
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W G I +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVADFLAQVAPYGWQLTPV-PWCPEGFWIERDDEDALPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AALM+N G + AN+
Sbjct: 91 AEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 YSASRVKVLHANISRCGIHNVGLTHFDGRVFGAALPEQFDAIL 193
>gi|213026395|ref|ZP_03340842.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 202
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
S QRPL +IR NTLK D + G +L PI W G I +P+G+T
Sbjct: 6 SACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPLGST 64
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA M N G + AN+
Sbjct: 65 AEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANE 124
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 125 FSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 167
>gi|419221581|ref|ZP_13764512.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8E]
gi|378067476|gb|EHW29598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8E]
Length = 423
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|419255052|ref|ZP_13797575.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10A]
gi|378102094|gb|EHW63778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10A]
Length = 331
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGAI 145
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|419136597|ref|ZP_13681398.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5E]
gi|377985785|gb|EHV48997.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5E]
Length = 479
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|188025255|ref|ZP_02997418.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4113]
gi|189406265|ref|ZP_02827395.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC508]
gi|208810551|ref|ZP_03252427.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4206]
gi|416312347|ref|ZP_11657548.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1044]
gi|452968413|ref|ZP_21966640.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EC4009]
gi|188013980|gb|EDU52102.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4113]
gi|189375610|gb|EDU94026.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC508]
gi|208725067|gb|EDZ74774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4206]
gi|326342214|gb|EGD65995.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1044]
Length = 506
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLKT D + G L PI W + G I +P
Sbjct: 56 FLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 112
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 113 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAI 172
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 173 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 219
>gi|15802248|ref|NP_288272.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EDL933]
gi|15831799|ref|NP_310572.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. Sakai]
gi|195939736|ref|ZP_03085118.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EC4024]
gi|387882943|ref|YP_006313245.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
Xuzhou21]
gi|12515885|gb|AAG56825.1|AE005406_4 putative nucleolar proteins [Escherichia coli O157:H7 str. EDL933]
gi|13362013|dbj|BAB35968.1| putative rRNA methylase [Escherichia coli O157:H7 str. Sakai]
gi|209767728|gb|ACI82176.1| putative rRNA methylase [Escherichia coli]
gi|209767730|gb|ACI82177.1| putative rRNA methylase [Escherichia coli]
gi|209767732|gb|ACI82178.1| putative rRNA methylase [Escherichia coli]
gi|209767736|gb|ACI82180.1| putative rRNA methylase [Escherichia coli]
gi|386796401|gb|AFJ29435.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
Xuzhou21]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|343511741|ref|ZP_08748894.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio scophthalmi
LMG 19158]
gi|342797049|gb|EGU32705.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio scophthalmi
LMG 19158]
Length = 459
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK + Q ++G L P+ W G I S VP+G T E+
Sbjct: 18 CQRPLRKSVRVNTLKLSVEEFKQRAASKGWQLYPV-PWCDEGFWIEADESVVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA M N G+L AN+ S
Sbjct: 77 MTGLFYIQEASSMMPVSALFMGESSYNAVLDMAAAPGSKTTQVAACMNNDGILIANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGVRNTALSNYDGRVFGAWLPEHFDAVL 176
>gi|209767734|gb|ACI82179.1| putative rRNA methylase [Escherichia coli]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|387507081|ref|YP_006159337.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. RM12579]
gi|419126169|ref|ZP_13671058.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5C]
gi|419131771|ref|ZP_13676612.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5D]
gi|374359075|gb|AEZ40782.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. RM12579]
gi|377976224|gb|EHV39535.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5C]
gi|377977174|gb|EHV40475.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5D]
Length = 479
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|432449848|ref|ZP_19692120.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE193]
gi|433033573|ref|ZP_20221305.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE112]
gi|430981424|gb|ELC98152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE193]
gi|431553563|gb|ELI27489.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE112]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|260868356|ref|YP_003234758.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|257764712|dbj|BAI36207.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|444375577|ref|ZP_21174831.1| Ribosomal RNA small subunit methyltransferase F [Enterovibrio sp.
AK16]
gi|443680307|gb|ELT86953.1| Ribosomal RNA small subunit methyltransferase F [Enterovibrio sp.
AK16]
Length = 476
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYN---STV 56
F+E+ +RPL ++R NTLK D + +G NL P+ W G + + V
Sbjct: 27 DFIES--CKRPLRRSLRVNTLKISVEDFLERANEKGWNLSPV-PWCDTGFWLDDYDEDNV 83
Query: 57 PIGATPEYLGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGV 98
P+G T E++ G + +Q AS AP AA + N G+
Sbjct: 84 PLGNTAEHMAGLFYIQEASSMLPVTALLENDITLNRVLDMAAAPGSKTTQIAAALNNEGL 143
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
L AN+ S R K + N R GV+NS +T DGR +G PE +A++
Sbjct: 144 LVANEYSASRVKVLHANLLRCGVVNSALTNYDGRVFGDWLPETFDAIL 191
>gi|189403504|ref|ZP_03007106.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4486]
gi|217328807|ref|ZP_03444888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. TW14588]
gi|416327317|ref|ZP_11667324.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1125]
gi|189360318|gb|EDU78737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4486]
gi|217318154|gb|EEC26581.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. TW14588]
gi|326343764|gb|EGD67526.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. 1125]
Length = 514
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLKT D + G L PI W + G I +P
Sbjct: 64 FLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 120
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 121 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAI 180
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 181 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 227
>gi|291283017|ref|YP_003499835.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O55:H7 str. CB9615]
gi|290762890|gb|ADD56851.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O55:H7 str. CB9615]
Length = 506
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLKT D + G L PI W + G I +P
Sbjct: 56 FLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 112
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 113 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAI 172
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 173 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 219
>gi|421812516|ref|ZP_16248263.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0416]
gi|408602296|gb|EKK76017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0416]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|415817991|ref|ZP_11507907.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1180]
gi|417195325|ref|ZP_12015739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0522]
gi|417591973|ref|ZP_12242672.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2534-86]
gi|419197220|ref|ZP_13740613.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8A]
gi|419887834|ref|ZP_14408386.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9570]
gi|419897168|ref|ZP_14416761.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9574]
gi|420091432|ref|ZP_14603179.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9602]
gi|420093785|ref|ZP_14605420.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9634]
gi|424770347|ref|ZP_18197552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CFSAN001632]
gi|323180615|gb|EFZ66160.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1180]
gi|345340633|gb|EGW73051.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
2534-86]
gi|378048532|gb|EHW10886.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8A]
gi|386189367|gb|EIH78133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0522]
gi|388355746|gb|EIL20568.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9574]
gi|388361751|gb|EIL25828.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9570]
gi|394383017|gb|EJE60625.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9602]
gi|394398298|gb|EJE74485.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CVM9634]
gi|421942545|gb|EKT99872.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H8 str. CFSAN001632]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|417213137|ref|ZP_12022499.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
JB1-95]
gi|419203416|ref|ZP_13746615.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8B]
gi|378051398|gb|EHW13715.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8B]
gi|386194525|gb|EIH88776.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
JB1-95]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|432602355|ref|ZP_19838599.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE66]
gi|431140929|gb|ELE42694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE66]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVTDFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|187776449|ref|ZP_02802778.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4196]
gi|189010611|ref|ZP_02808140.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4076]
gi|189402623|ref|ZP_02783593.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4401]
gi|189404116|ref|ZP_02787380.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4501]
gi|189405107|ref|ZP_02813260.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC869]
gi|208816841|ref|ZP_03257961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4045]
gi|208821320|ref|ZP_03261640.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4042]
gi|209399709|ref|YP_002270917.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. EC4115]
gi|254793459|ref|YP_003078296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. TW14359]
gi|261227667|ref|ZP_05941948.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258167|ref|ZP_05950700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. FRIK966]
gi|416323062|ref|ZP_11664671.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC1212]
gi|416773921|ref|ZP_11873915.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. G5101]
gi|416785923|ref|ZP_11878819.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. 493-89]
gi|416796902|ref|ZP_11883736.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. H 2687]
gi|416808346|ref|ZP_11888391.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. 3256-97]
gi|416827600|ref|ZP_11897616.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. USDA 5905]
gi|416828981|ref|ZP_11898275.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. LSU-61]
gi|419045306|ref|ZP_13592252.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3A]
gi|419051372|ref|ZP_13598253.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3B]
gi|419057372|ref|ZP_13604187.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3C]
gi|419062751|ref|ZP_13609490.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3D]
gi|419069654|ref|ZP_13615290.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3E]
gi|419075726|ref|ZP_13621257.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3F]
gi|419080888|ref|ZP_13626345.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4A]
gi|419086523|ref|ZP_13631893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4B]
gi|419092504|ref|ZP_13637797.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4C]
gi|419098361|ref|ZP_13643574.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4D]
gi|419104146|ref|ZP_13649287.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4E]
gi|419109698|ref|ZP_13654765.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4F]
gi|419120653|ref|ZP_13665619.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5B]
gi|420269456|ref|ZP_14771829.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA22]
gi|420275598|ref|ZP_14777899.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA40]
gi|420280728|ref|ZP_14782975.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW06591]
gi|420286997|ref|ZP_14789194.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10246]
gi|420292580|ref|ZP_14794712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW11039]
gi|420298367|ref|ZP_14800430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09109]
gi|420304138|ref|ZP_14806145.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10119]
gi|420309594|ref|ZP_14811538.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1738]
gi|420315060|ref|ZP_14816943.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1734]
gi|421818550|ref|ZP_16254062.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0821]
gi|421824171|ref|ZP_16259565.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK920]
gi|421831058|ref|ZP_16266356.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA7]
gi|423711519|ref|ZP_17685828.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA31]
gi|424077674|ref|ZP_17814728.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA505]
gi|424084050|ref|ZP_17820611.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA517]
gi|424090471|ref|ZP_17826499.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1996]
gi|424096996|ref|ZP_17832416.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1985]
gi|424103334|ref|ZP_17838210.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1990]
gi|424110057|ref|ZP_17844376.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93-001]
gi|424115763|ref|ZP_17849694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA3]
gi|424122132|ref|ZP_17855545.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA5]
gi|424128258|ref|ZP_17861234.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA9]
gi|424134449|ref|ZP_17866995.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA10]
gi|424141088|ref|ZP_17873066.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA14]
gi|424147515|ref|ZP_17878976.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA15]
gi|424153448|ref|ZP_17884463.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA24]
gi|424235941|ref|ZP_17889914.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA25]
gi|424313528|ref|ZP_17895821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA28]
gi|424449871|ref|ZP_17901645.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA32]
gi|424456040|ref|ZP_17907268.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA33]
gi|424462346|ref|ZP_17912917.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA39]
gi|424468744|ref|ZP_17918658.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA41]
gi|424475329|ref|ZP_17924738.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA42]
gi|424481071|ref|ZP_17930113.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW07945]
gi|424487250|ref|ZP_17935877.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09098]
gi|424493657|ref|ZP_17941563.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09195]
gi|424500514|ref|ZP_17947514.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4203]
gi|424506669|ref|ZP_17953182.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4196]
gi|424514156|ref|ZP_17958934.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14313]
gi|424520446|ref|ZP_17964640.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14301]
gi|424526355|ref|ZP_17970139.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4421]
gi|424532519|ref|ZP_17975924.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4422]
gi|424538522|ref|ZP_17981539.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4013]
gi|424544488|ref|ZP_17987012.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4402]
gi|424550754|ref|ZP_17992701.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4439]
gi|424557000|ref|ZP_17998477.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4436]
gi|424563348|ref|ZP_18004406.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4437]
gi|424569420|ref|ZP_18010071.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4448]
gi|424575546|ref|ZP_18015719.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1845]
gi|424581405|ref|ZP_18021127.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1863]
gi|425098253|ref|ZP_18501047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4870]
gi|425104433|ref|ZP_18506798.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5.2239]
gi|425110262|ref|ZP_18512259.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
6.0172]
gi|425126052|ref|ZP_18527316.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0586]
gi|425131908|ref|ZP_18532811.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.2524]
gi|425138276|ref|ZP_18538745.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0833]
gi|425144234|ref|ZP_18544295.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0869]
gi|425150302|ref|ZP_18549983.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.0221]
gi|425156147|ref|ZP_18555474.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA34]
gi|425162659|ref|ZP_18561598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA506]
gi|425168332|ref|ZP_18566878.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA507]
gi|425174422|ref|ZP_18572593.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA504]
gi|425180363|ref|ZP_18578143.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1999]
gi|425186599|ref|ZP_18583958.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1997]
gi|425193469|ref|ZP_18590318.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE1487]
gi|425199858|ref|ZP_18596176.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE037]
gi|425206306|ref|ZP_18602186.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK2001]
gi|425212043|ref|ZP_18607529.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA4]
gi|425218172|ref|ZP_18613218.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA23]
gi|425224688|ref|ZP_18619251.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA49]
gi|425230922|ref|ZP_18625050.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA45]
gi|425237072|ref|ZP_18630831.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TT12B]
gi|425243134|ref|ZP_18636514.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
MA6]
gi|425249293|ref|ZP_18642289.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5905]
gi|425255064|ref|ZP_18647657.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
CB7326]
gi|425261358|ref|ZP_18653445.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC96038]
gi|425267397|ref|ZP_18659081.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5412]
gi|425294851|ref|ZP_18685135.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA38]
gi|425311537|ref|ZP_18700782.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1735]
gi|425317464|ref|ZP_18706317.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1736]
gi|425323569|ref|ZP_18712002.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1737]
gi|425329732|ref|ZP_18717699.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1846]
gi|425335899|ref|ZP_18723389.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1847]
gi|425342325|ref|ZP_18729305.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1848]
gi|425348136|ref|ZP_18734708.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1849]
gi|425354437|ref|ZP_18740582.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1850]
gi|425360409|ref|ZP_18746142.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1856]
gi|425366535|ref|ZP_18751821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1862]
gi|425372956|ref|ZP_18757691.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1864]
gi|425385781|ref|ZP_18769429.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1866]
gi|425392470|ref|ZP_18775669.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1868]
gi|425398625|ref|ZP_18781414.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1869]
gi|425411234|ref|ZP_18793077.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE098]
gi|425417541|ref|ZP_18798886.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK523]
gi|425428796|ref|ZP_18809490.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1304]
gi|428947155|ref|ZP_19019542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1467]
gi|428953392|ref|ZP_19025241.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1042]
gi|428959313|ref|ZP_19030693.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
89.0511]
gi|428965766|ref|ZP_19036623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0091]
gi|428971669|ref|ZP_19042088.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0039]
gi|428978192|ref|ZP_19048081.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.2281]
gi|428984004|ref|ZP_19053459.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0055]
gi|428990138|ref|ZP_19059185.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0056]
gi|428995912|ref|ZP_19064593.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
94.0618]
gi|429002033|ref|ZP_19070273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0183]
gi|429008283|ref|ZP_19075885.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.1288]
gi|429014768|ref|ZP_19081737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0943]
gi|429020712|ref|ZP_19087287.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0428]
gi|429026683|ref|ZP_19092778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0427]
gi|429032759|ref|ZP_19098365.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0939]
gi|429038903|ref|ZP_19104093.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0932]
gi|429044934|ref|ZP_19109701.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0107]
gi|429050387|ref|ZP_19114987.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0003]
gi|429055624|ref|ZP_19120017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.1742]
gi|429061269|ref|ZP_19125336.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0007]
gi|429067360|ref|ZP_19130906.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0672]
gi|429073365|ref|ZP_19136656.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0678]
gi|429078690|ref|ZP_19141854.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0713]
gi|429826609|ref|ZP_19357745.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0109]
gi|429832883|ref|ZP_19363363.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0010]
gi|444925049|ref|ZP_21244455.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
09BKT078844]
gi|444930900|ref|ZP_21249986.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0814]
gi|444936192|ref|ZP_21255030.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0815]
gi|444941826|ref|ZP_21260400.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0816]
gi|444947470|ref|ZP_21265825.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0839]
gi|444953019|ref|ZP_21271160.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0848]
gi|444958525|ref|ZP_21276425.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1753]
gi|444963690|ref|ZP_21281349.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1775]
gi|444969573|ref|ZP_21286980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1793]
gi|444974914|ref|ZP_21292096.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1805]
gi|444980409|ref|ZP_21297352.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ATCC 700728]
gi|444985731|ref|ZP_21302546.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA11]
gi|444991016|ref|ZP_21307698.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA19]
gi|444996217|ref|ZP_21312756.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA13]
gi|445001851|ref|ZP_21318269.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA2]
gi|445007314|ref|ZP_21323597.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA47]
gi|445012429|ref|ZP_21328570.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA48]
gi|445018168|ref|ZP_21334163.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA8]
gi|445023819|ref|ZP_21339677.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
7.1982]
gi|445029060|ref|ZP_21344772.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1781]
gi|445034503|ref|ZP_21350065.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1762]
gi|445040220|ref|ZP_21355626.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA35]
gi|445045340|ref|ZP_21360632.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4880]
gi|445050938|ref|ZP_21366032.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0083]
gi|445056748|ref|ZP_21371637.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0670]
gi|146325690|sp|Q8XCL9.2|RSMF_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725334|sp|B5YQX9.1|RSMF_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|187767061|gb|EDU30905.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4196]
gi|188999444|gb|EDU68430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4076]
gi|189354637|gb|EDU73056.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4401]
gi|189367398|gb|EDU85814.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4501]
gi|189372082|gb|EDU90498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC869]
gi|208731184|gb|EDZ79873.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4045]
gi|208741443|gb|EDZ89125.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4042]
gi|209161109|gb|ACI38542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC4115]
gi|254592859|gb|ACT72220.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|320188535|gb|EFW63197.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O157:H7 str. EC1212]
gi|320641687|gb|EFX11075.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. G5101]
gi|320647046|gb|EFX15879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. 493-89]
gi|320652329|gb|EFX20627.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H- str. H 2687]
gi|320657930|gb|EFX25692.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320658503|gb|EFX26197.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O55:H7 str. USDA 5905]
gi|320668402|gb|EFX35229.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H7 str. LSU-61]
gi|377894903|gb|EHU59316.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3A]
gi|377895696|gb|EHU60107.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3B]
gi|377906653|gb|EHU70895.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3C]
gi|377911988|gb|EHU76153.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3D]
gi|377914712|gb|EHU78834.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3E]
gi|377923343|gb|EHU87310.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC3F]
gi|377928370|gb|EHU92281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4A]
gi|377932943|gb|EHU96789.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4B]
gi|377943793|gb|EHV07502.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4C]
gi|377944677|gb|EHV08379.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4D]
gi|377949959|gb|EHV13590.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4E]
gi|377958905|gb|EHV22417.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC4F]
gi|377968860|gb|EHV32251.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5B]
gi|390645077|gb|EIN24261.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA517]
gi|390645270|gb|EIN24453.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1996]
gi|390645951|gb|EIN25089.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA505]
gi|390663541|gb|EIN41037.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93-001]
gi|390664878|gb|EIN42206.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1985]
gi|390665972|gb|EIN43178.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1990]
gi|390681532|gb|EIN57325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA3]
gi|390684575|gb|EIN60186.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA5]
gi|390685555|gb|EIN61025.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA9]
gi|390701404|gb|EIN75628.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA10]
gi|390703016|gb|EIN77067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA15]
gi|390703753|gb|EIN77748.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA14]
gi|390715658|gb|EIN88494.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA22]
gi|390726858|gb|EIN99286.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA25]
gi|390727309|gb|EIN99726.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA24]
gi|390729496|gb|EIO01656.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA28]
gi|390745141|gb|EIO15961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA32]
gi|390745979|gb|EIO16754.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA31]
gi|390747499|gb|EIO18052.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA33]
gi|390759379|gb|EIO28777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA40]
gi|390769862|gb|EIO38758.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA41]
gi|390771440|gb|EIO40120.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA39]
gi|390771843|gb|EIO40498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA42]
gi|390782669|gb|EIO50303.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW06591]
gi|390791177|gb|EIO58572.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10246]
gi|390797043|gb|EIO64309.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW07945]
gi|390798379|gb|EIO65575.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW11039]
gi|390808557|gb|EIO75396.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09109]
gi|390809701|gb|EIO76483.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09098]
gi|390816824|gb|EIO83284.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW10119]
gi|390829173|gb|EIO94781.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4203]
gi|390832383|gb|EIO97639.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW09195]
gi|390833989|gb|EIO98965.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4196]
gi|390848934|gb|EIP12382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14301]
gi|390850617|gb|EIP13978.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW14313]
gi|390852296|gb|EIP15465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4421]
gi|390863608|gb|EIP25740.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4422]
gi|390867969|gb|EIP29735.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4013]
gi|390873673|gb|EIP34854.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4402]
gi|390880628|gb|EIP41304.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4439]
gi|390885081|gb|EIP45330.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4436]
gi|390896525|gb|EIP55911.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4437]
gi|390900523|gb|EIP59742.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4448]
gi|390901041|gb|EIP60225.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1738]
gi|390908761|gb|EIP67562.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1734]
gi|390921216|gb|EIP79439.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1863]
gi|390922106|gb|EIP80214.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1845]
gi|408067100|gb|EKH01543.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA7]
gi|408070881|gb|EKH05237.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK920]
gi|408076210|gb|EKH10438.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA34]
gi|408081984|gb|EKH15976.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA506]
gi|408084454|gb|EKH18226.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA507]
gi|408093220|gb|EKH26319.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FDA504]
gi|408099090|gb|EKH31744.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1999]
gi|408106904|gb|EKH38995.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK1997]
gi|408110645|gb|EKH42432.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE1487]
gi|408118052|gb|EKH49226.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE037]
gi|408123574|gb|EKH54313.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK2001]
gi|408129592|gb|EKH59811.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA4]
gi|408141017|gb|EKH70497.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA23]
gi|408142730|gb|EKH72079.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA49]
gi|408147825|gb|EKH76734.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA45]
gi|408156170|gb|EKH84377.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TT12B]
gi|408163293|gb|EKH91160.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
MA6]
gi|408165714|gb|EKH93391.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5905]
gi|408176842|gb|EKI03675.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
CB7326]
gi|408183588|gb|EKI10013.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC96038]
gi|408184418|gb|EKI10741.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5412]
gi|408220370|gb|EKI44426.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA38]
gi|408229729|gb|EKI53156.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1735]
gi|408241087|gb|EKI63737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1736]
gi|408245145|gb|EKI67538.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1737]
gi|408249524|gb|EKI71454.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1846]
gi|408260010|gb|EKI81145.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1847]
gi|408261993|gb|EKI82946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1848]
gi|408267643|gb|EKI88090.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1849]
gi|408277629|gb|EKI97416.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1850]
gi|408279883|gb|EKI99466.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1856]
gi|408291533|gb|EKJ10130.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1862]
gi|408293872|gb|EKJ12293.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1864]
gi|408310842|gb|EKJ27883.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1868]
gi|408311346|gb|EKJ28356.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1866]
gi|408323585|gb|EKJ39547.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1869]
gi|408328146|gb|EKJ43763.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
NE098]
gi|408338947|gb|EKJ53567.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
FRIK523]
gi|408348739|gb|EKJ62820.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1304]
gi|408551745|gb|EKK28983.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
5.2239]
gi|408552556|gb|EKK29728.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4870]
gi|408553125|gb|EKK30256.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
6.0172]
gi|408574331|gb|EKK50108.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0586]
gi|408582448|gb|EKK57663.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0833]
gi|408583114|gb|EKK58292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.2524]
gi|408594695|gb|EKK68976.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0869]
gi|408598260|gb|EKK72219.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.0221]
gi|408613650|gb|EKK86937.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
10.0821]
gi|427207688|gb|EKV77856.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1042]
gi|427209349|gb|EKV79388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
89.0511]
gi|427210622|gb|EKV80477.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
88.1467]
gi|427226374|gb|EKV94964.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.2281]
gi|427226655|gb|EKV95244.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0091]
gi|427229636|gb|EKV97950.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
90.0039]
gi|427244819|gb|EKW12128.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0056]
gi|427245468|gb|EKW12752.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
93.0055]
gi|427247677|gb|EKW14729.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
94.0618]
gi|427263496|gb|EKW29254.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0943]
gi|427264379|gb|EKW30066.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0183]
gi|427266321|gb|EKW31770.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.1288]
gi|427278696|gb|EKW43152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0428]
gi|427282542|gb|EKW46787.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0427]
gi|427285121|gb|EKW49124.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0939]
gi|427294357|gb|EKW57542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0932]
gi|427301513|gb|EKW64375.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0107]
gi|427301806|gb|EKW64660.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0003]
gi|427315647|gb|EKW77636.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.1742]
gi|427317812|gb|EKW79703.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0007]
gi|427322418|gb|EKW84051.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0672]
gi|427330151|gb|EKW91429.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0678]
gi|427330547|gb|EKW91817.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0713]
gi|429255226|gb|EKY39561.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
96.0109]
gi|429256999|gb|EKY41102.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
97.0010]
gi|444539994|gb|ELV19701.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0814]
gi|444542797|gb|ELV22133.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
09BKT078844]
gi|444548783|gb|ELV27139.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0815]
gi|444559862|gb|ELV37063.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0839]
gi|444561787|gb|ELV38890.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0816]
gi|444565886|gb|ELV42729.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0848]
gi|444575328|gb|ELV51570.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1753]
gi|444579521|gb|ELV55507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1775]
gi|444581713|gb|ELV57551.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1793]
gi|444595311|gb|ELV70415.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA11]
gi|444595491|gb|ELV70593.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
ATCC 700728]
gi|444598218|gb|ELV73154.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1805]
gi|444609137|gb|ELV83596.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA19]
gi|444609508|gb|ELV83966.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA13]
gi|444617410|gb|ELV91526.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA2]
gi|444626319|gb|ELW00115.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA47]
gi|444626700|gb|ELW00492.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA48]
gi|444631880|gb|ELW05463.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA8]
gi|444641171|gb|ELW14410.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
7.1982]
gi|444644106|gb|ELW17230.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1781]
gi|444647379|gb|ELW20353.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.1762]
gi|444655991|gb|ELW28527.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
PA35]
gi|444662806|gb|ELW35058.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3.4880]
gi|444667615|gb|ELW39649.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
95.0083]
gi|444671001|gb|ELW42840.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
99.0670]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|432534081|ref|ZP_19771059.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE234]
gi|431061231|gb|ELD70550.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE234]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|419114978|ref|ZP_13660000.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5A]
gi|377962183|gb|EHV25646.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC5A]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|417662425|ref|ZP_12312006.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
AA86]
gi|330911643|gb|EGH40153.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
AA86]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|331647332|ref|ZP_08348426.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M605]
gi|331044115|gb|EGI16251.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli M605]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|300951450|ref|ZP_07165288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
116-1]
gi|300956658|ref|ZP_07168934.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
175-1]
gi|331642446|ref|ZP_08343581.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H736]
gi|386280895|ref|ZP_10058559.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
4_1_40B]
gi|386595355|ref|YP_006091755.1| RNA methylase [Escherichia coli DH1]
gi|387621555|ref|YP_006129182.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1]
gi|419941928|ref|ZP_14458580.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 75]
gi|423704700|ref|ZP_17679123.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H730]
gi|432417058|ref|ZP_19659669.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE44]
gi|432564032|ref|ZP_19800622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE51]
gi|432627419|ref|ZP_19863399.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE77]
gi|432637061|ref|ZP_19872937.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE81]
gi|432685621|ref|ZP_19920923.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE156]
gi|432691773|ref|ZP_19927004.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE161]
gi|432704590|ref|ZP_19939694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE171]
gi|432737323|ref|ZP_19972089.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE42]
gi|432955267|ref|ZP_20147207.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE197]
gi|433048113|ref|ZP_20235482.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE120]
gi|260449044|gb|ACX39466.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli DH1]
gi|300316536|gb|EFJ66320.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
175-1]
gi|300449302|gb|EFK12922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
116-1]
gi|315136478|dbj|BAJ43637.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1]
gi|331039244|gb|EGI11464.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H736]
gi|385705343|gb|EIG42408.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H730]
gi|386122078|gb|EIG70691.1| ribosomal RNA small subunit methyltransferase F [Escherichia sp.
4_1_40B]
gi|388399343|gb|EIL60144.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 75]
gi|430940420|gb|ELC60603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE44]
gi|431094624|gb|ELE00255.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE51]
gi|431164112|gb|ELE64513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE77]
gi|431172050|gb|ELE72201.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE81]
gi|431222656|gb|ELF19932.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE156]
gi|431227248|gb|ELF24385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE161]
gi|431243896|gb|ELF38224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE171]
gi|431284423|gb|ELF75281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE42]
gi|431467938|gb|ELH47944.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE197]
gi|431566219|gb|ELI39258.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE120]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|427804967|ref|ZP_18972034.1| putative nucleolar proteins [Escherichia coli chi7122]
gi|427809523|ref|ZP_18976588.1| putative nucleolar proteins [Escherichia coli]
gi|432481174|ref|ZP_19723132.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE210]
gi|432674872|ref|ZP_19910345.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE142]
gi|412963149|emb|CCK47067.1| putative nucleolar proteins [Escherichia coli chi7122]
gi|412969702|emb|CCJ44340.1| putative nucleolar proteins [Escherichia coli]
gi|431007831|gb|ELD22642.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE210]
gi|431215373|gb|ELF13069.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE142]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|425404657|ref|ZP_18786988.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1870]
gi|408328964|gb|EKJ44503.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1870]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|422999907|ref|ZP_16990661.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 09-7901]
gi|354872878|gb|EHF33255.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 09-7901]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|260855695|ref|YP_003229586.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. 11368]
gi|300904700|ref|ZP_07122533.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
84-1]
gi|301304407|ref|ZP_07210519.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
124-1]
gi|415861250|ref|ZP_11534916.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
85-1]
gi|433130361|ref|ZP_20315806.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE163]
gi|433135063|ref|ZP_20320417.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE166]
gi|257754344|dbj|BAI25846.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|300403367|gb|EFJ86905.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
84-1]
gi|300840258|gb|EFK68018.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
124-1]
gi|315257353|gb|EFU37321.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
85-1]
gi|431647409|gb|ELJ14893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE163]
gi|431657926|gb|ELJ24888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE166]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|433092243|ref|ZP_20278517.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE138]
gi|431610789|gb|ELI80073.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE138]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432947702|ref|ZP_20142858.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE196]
gi|433043425|ref|ZP_20230926.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE117]
gi|431457680|gb|ELH38017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE196]
gi|431556756|gb|ELI30531.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE117]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLAAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|419261256|ref|ZP_13803684.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10B]
gi|378108587|gb|EHW70200.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10B]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|422828859|ref|ZP_16877028.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B093]
gi|371611960|gb|EHO00478.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B093]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|415791541|ref|ZP_11495365.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
EPECa14]
gi|417298720|ref|ZP_12085958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
900105 (10e)]
gi|417639370|ref|ZP_12289520.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
TX1999]
gi|419170394|ref|ZP_13714284.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7A]
gi|419181043|ref|ZP_13724660.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7C]
gi|419186479|ref|ZP_13729996.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7D]
gi|419191764|ref|ZP_13735224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7E]
gi|419209699|ref|ZP_13752789.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8C]
gi|419215732|ref|ZP_13758739.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8D]
gi|419226913|ref|ZP_13769778.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9A]
gi|419232258|ref|ZP_13775039.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9B]
gi|419238034|ref|ZP_13780759.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9C]
gi|419243473|ref|ZP_13786114.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9D]
gi|419249295|ref|ZP_13791884.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9E]
gi|419266931|ref|ZP_13809292.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10C]
gi|419272765|ref|ZP_13815067.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10D]
gi|419284186|ref|ZP_13826370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10F]
gi|419873598|ref|ZP_14395579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9534]
gi|419900258|ref|ZP_14419714.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9942]
gi|419909256|ref|ZP_14427868.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10026]
gi|420104211|ref|ZP_14614947.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9455]
gi|420109095|ref|ZP_14619283.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9553]
gi|420117140|ref|ZP_14626507.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10021]
gi|420121918|ref|ZP_14630961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10030]
gi|420129763|ref|ZP_14638286.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10224]
gi|420134108|ref|ZP_14642255.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9952]
gi|420385829|ref|ZP_14885188.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPECa12]
gi|424752028|ref|ZP_18180034.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CFSAN001629]
gi|424756014|ref|ZP_18183851.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CFSAN001630]
gi|425379593|ref|ZP_18763705.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1865]
gi|323153088|gb|EFZ39356.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
EPECa14]
gi|345393768|gb|EGX23537.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
TX1999]
gi|378016625|gb|EHV79505.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7A]
gi|378024411|gb|EHV87065.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7C]
gi|378030183|gb|EHV92787.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7D]
gi|378039707|gb|EHW02195.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC7E]
gi|378055564|gb|EHW17826.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8C]
gi|378063591|gb|EHW25759.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC8D]
gi|378076004|gb|EHW38017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9A]
gi|378078751|gb|EHW40730.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9B]
gi|378084584|gb|EHW46486.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9C]
gi|378092081|gb|EHW53908.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9D]
gi|378096668|gb|EHW58438.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC9E]
gi|378112803|gb|EHW74376.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10C]
gi|378118141|gb|EHW79650.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10D]
gi|378134055|gb|EHW95385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10F]
gi|386257759|gb|EIJ13242.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
900105 (10e)]
gi|388352361|gb|EIL17485.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9534]
gi|388373545|gb|EIL36814.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10026]
gi|388378399|gb|EIL41140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9942]
gi|391306075|gb|EIQ63840.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPECa12]
gi|394381779|gb|EJE59444.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10224]
gi|394402494|gb|EJE78213.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10021]
gi|394404947|gb|EJE80253.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9455]
gi|394408010|gb|EJE82743.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CVM9553]
gi|394423002|gb|EJE96301.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM9952]
gi|394424485|gb|EJE97615.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CVM10030]
gi|408298385|gb|EKJ16328.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC1865]
gi|421938317|gb|EKT95891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O26:H11 str. CFSAN001629]
gi|421949824|gb|EKU06734.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O111:H11 str. CFSAN001630]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|309794215|ref|ZP_07688639.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
145-7]
gi|308122120|gb|EFO59382.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
145-7]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|193069919|ref|ZP_03050868.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E110019]
gi|443617913|ref|YP_007381769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O78]
gi|192956819|gb|EDV87273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E110019]
gi|443422421|gb|AGC87325.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
O78]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|432869033|ref|ZP_20089828.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE147]
gi|431410949|gb|ELG94092.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE147]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|301026587|ref|ZP_07190010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
69-1]
gi|419916440|ref|ZP_14434747.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD2]
gi|300395420|gb|EFJ78958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
69-1]
gi|388395891|gb|EIL57026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli KD2]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|74311854|ref|YP_310273.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei
Ss046]
gi|73855331|gb|AAZ88038.1| putative nucleolar proteins [Shigella sonnei Ss046]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|419391752|ref|ZP_13932567.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15A]
gi|419396821|ref|ZP_13937591.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15B]
gi|419402156|ref|ZP_13942881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15C]
gi|419407299|ref|ZP_13947990.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15D]
gi|419412835|ref|ZP_13953491.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15E]
gi|378238476|gb|EHX98477.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15A]
gi|378245172|gb|EHY05110.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15B]
gi|378248015|gb|EHY07930.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15C]
gi|378255549|gb|EHY15407.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15D]
gi|378259700|gb|EHY19512.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC15E]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|331683339|ref|ZP_08383940.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H299]
gi|331079554|gb|EGI50751.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H299]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|419923594|ref|ZP_14441531.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-15]
gi|388393387|gb|EIL54769.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-15]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|386704436|ref|YP_006168283.1| tRNA and rRNA cytosine-C5-methylase [Escherichia coli P12b]
gi|383102604|gb|AFG40113.1| tRNA and rRNA cytosine-C5-methylase [Escherichia coli P12b]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|383177988|ref|YP_005455993.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei 53G]
gi|414575611|ref|ZP_11432811.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3233-85]
gi|415848889|ref|ZP_11526389.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei
53G]
gi|418264593|ref|ZP_12884908.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
str. Moseley]
gi|420358135|ref|ZP_14859128.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3226-85]
gi|420363170|ref|ZP_14864072.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
4822-66]
gi|146325708|sp|Q3Z2H4.2|RSMF_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|323166480|gb|EFZ52243.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei
53G]
gi|391285269|gb|EIQ43849.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3226-85]
gi|391286842|gb|EIQ45376.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
3233-85]
gi|391295287|gb|EIQ53456.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
4822-66]
gi|397901745|gb|EJL18085.1| ribosomal RNA small subunit methyltransferase F [Shigella sonnei
str. Moseley]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|82543759|ref|YP_407706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii
Sb227]
gi|81245170|gb|ABB65878.1| putative nucleolar proteins [Shigella boydii Sb227]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|417287293|ref|ZP_12074580.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
TW07793]
gi|386249626|gb|EII95797.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
TW07793]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|417608403|ref|ZP_12258909.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_DG131-3]
gi|422774265|ref|ZP_16827921.1| NOL1/NOP2/sun family protein [Escherichia coli H120]
gi|425422532|ref|ZP_18803712.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1288]
gi|323948280|gb|EGB44268.1| NOL1/NOP2/sun family protein [Escherichia coli H120]
gi|345358993|gb|EGW91172.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_DG131-3]
gi|408344770|gb|EKJ59119.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
0.1288]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|218554409|ref|YP_002387322.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
IAI1]
gi|293446207|ref|ZP_06662629.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B088]
gi|331668527|ref|ZP_08369375.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA271]
gi|417168095|ref|ZP_12000717.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
99.0741]
gi|417265971|ref|ZP_12053340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.3884]
gi|418044028|ref|ZP_12682177.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W26]
gi|418941099|ref|ZP_13494438.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H43 str. T22]
gi|419805996|ref|ZP_14331116.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli AI27]
gi|422761081|ref|ZP_16814840.1| NOL1/NOP2/sun family protein [Escherichia coli E1167]
gi|226725336|sp|B7M2B1.1|RSMF_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096806|sp|B6IBR3.2|RSMF_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218361177|emb|CAQ98760.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
IAI1]
gi|291323037|gb|EFE62465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B088]
gi|324118895|gb|EGC12784.1| NOL1/NOP2/sun family protein [Escherichia coli E1167]
gi|331063721|gb|EGI35632.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA271]
gi|375323589|gb|EHS69295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O157:H43 str. T22]
gi|383472979|gb|EID65009.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W26]
gi|384470967|gb|EIE55058.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli AI27]
gi|386171121|gb|EIH43169.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
99.0741]
gi|386231964|gb|EII59311.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.3884]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|209919201|ref|YP_002293285.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SE11]
gi|300824225|ref|ZP_07104343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
119-7]
gi|307314087|ref|ZP_07593699.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
gi|331677714|ref|ZP_08378389.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H591]
gi|332279011|ref|ZP_08391424.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
gi|378712724|ref|YP_005277617.1| RNA methylase [Escherichia coli KO11FL]
gi|386609221|ref|YP_006124707.1| putative methyltransferase [Escherichia coli W]
gi|386701196|ref|YP_006165033.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
KO11FL]
gi|386709694|ref|YP_006173415.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli W]
gi|419930537|ref|ZP_14448135.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-1]
gi|419950120|ref|ZP_14466340.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CUMT8]
gi|422353982|ref|ZP_16434729.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
117-3]
gi|432376983|ref|ZP_19619980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE12]
gi|432765189|ref|ZP_19999628.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE48]
gi|432831814|ref|ZP_20065388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE135]
gi|432834825|ref|ZP_20068364.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE136]
gi|432967956|ref|ZP_20156871.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE203]
gi|209912460|dbj|BAG77534.1| conserved hypothetical protein [Escherichia coli SE11]
gi|300523296|gb|EFK44365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
119-7]
gi|306906225|gb|EFN36742.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
gi|315061138|gb|ADT75465.1| predicted methyltransferase [Escherichia coli W]
gi|323378285|gb|ADX50553.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli KO11FL]
gi|324018025|gb|EGB87244.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
117-3]
gi|331074174|gb|EGI45494.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli H591]
gi|332101363|gb|EGJ04709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
gi|383392723|gb|AFH17681.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
KO11FL]
gi|383405386|gb|AFH11629.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli W]
gi|388399929|gb|EIL60703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
541-1]
gi|388417435|gb|EIL77277.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
CUMT8]
gi|430899275|gb|ELC21380.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE12]
gi|431310950|gb|ELF99130.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE48]
gi|431375784|gb|ELG61107.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE135]
gi|431385185|gb|ELG69172.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE136]
gi|431471073|gb|ELH50966.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE203]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|90111341|ref|NP_416349.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|170081491|ref|YP_001730811.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli str.
K-12 substr. DH10B]
gi|238901050|ref|YP_002926846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
BW2952]
gi|388477909|ref|YP_490097.1| methyltransferase [Escherichia coli str. K-12 substr. W3110]
gi|417262064|ref|ZP_12049552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.3916]
gi|417272767|ref|ZP_12060116.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.4168]
gi|417277041|ref|ZP_12064367.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2303]
gi|417291484|ref|ZP_12078765.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B41]
gi|417613256|ref|ZP_12263717.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_EH250]
gi|417618394|ref|ZP_12268814.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
G58-1]
gi|417634751|ref|ZP_12284965.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_S1191]
gi|417943508|ref|ZP_12586756.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH140A]
gi|417974931|ref|ZP_12615732.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH001]
gi|418303104|ref|ZP_12914898.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
UMNF18]
gi|418957798|ref|ZP_13509721.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J53]
gi|419154026|ref|ZP_13698594.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6C]
gi|419159335|ref|ZP_13703844.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6D]
gi|419164556|ref|ZP_13709013.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6E]
gi|419808928|ref|ZP_14333814.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O32:H37 str. P4]
gi|422772290|ref|ZP_16825978.1| NOL1/NOP2/sun family protein [Escherichia coli E482]
gi|425115218|ref|ZP_18517026.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0566]
gi|425119937|ref|ZP_18521643.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0569]
gi|425272947|ref|ZP_18664380.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW15901]
gi|425283429|ref|ZP_18674489.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW00353]
gi|442590260|ref|ZP_21009042.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|450244492|ref|ZP_21900343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S17]
gi|3915994|sp|P76273.2|RSMF_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|226725337|sp|B1XHA3.1|RSMF_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|259495488|sp|C4ZZJ2.1|RSMF_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|85675140|dbj|BAA15648.2| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|87081985|gb|AAC74905.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|169889326|gb|ACB03033.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
DH10B]
gi|238862668|gb|ACR64666.1| predicted methyltransferase [Escherichia coli BW2952]
gi|323940499|gb|EGB36690.1| NOL1/NOP2/sun family protein [Escherichia coli E482]
gi|339415202|gb|AEJ56874.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
UMNF18]
gi|342364834|gb|EGU28933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH140A]
gi|344195540|gb|EGV49609.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
XH001]
gi|345362767|gb|EGW94912.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_EH250]
gi|345376767|gb|EGX08700.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
G58-1]
gi|345388242|gb|EGX18053.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_S1191]
gi|359332313|dbj|BAL38760.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
MDS42]
gi|377998393|gb|EHV61485.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6C]
gi|378009379|gb|EHV72335.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6D]
gi|378010638|gb|EHV73583.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6E]
gi|384379407|gb|EIE37275.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli J53]
gi|385157858|gb|EIF19848.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O32:H37 str. P4]
gi|386225191|gb|EII47526.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.3916]
gi|386236467|gb|EII68443.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
2.4168]
gi|386240530|gb|EII77454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2303]
gi|386253806|gb|EIJ03496.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B41]
gi|408194206|gb|EKI19694.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW15901]
gi|408202717|gb|EKI27779.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TW00353]
gi|408569636|gb|EKK45623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0566]
gi|408570878|gb|EKK46834.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
8.0569]
gi|441609541|emb|CCP94955.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|449321177|gb|EMD11192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S17]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|187732363|ref|YP_001880634.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii CDC
3083-94]
gi|187429355|gb|ACD08629.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
CDC 3083-94]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432718952|ref|ZP_19953921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE9]
gi|431262764|gb|ELF54753.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE9]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|188494314|ref|ZP_03001584.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
53638]
gi|188489513|gb|EDU64616.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
53638]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|157157684|ref|YP_001463137.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
E24377A]
gi|253773210|ref|YP_003036041.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260844181|ref|YP_003221959.1| methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|297517982|ref|ZP_06936368.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
OP50]
gi|300924905|ref|ZP_07140836.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
182-1]
gi|300928863|ref|ZP_07144369.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
187-1]
gi|301327598|ref|ZP_07220815.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
78-1]
gi|422786424|ref|ZP_16839163.1| NOL1/NOP2/sun family protein [Escherichia coli H489]
gi|422816885|ref|ZP_16865099.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
M919]
gi|422956804|ref|ZP_16969278.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H494]
gi|422987886|ref|ZP_16978662.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C227-11]
gi|422994767|ref|ZP_16985531.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C236-11]
gi|423003518|ref|ZP_16994264.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 04-8351]
gi|423010083|ref|ZP_17000821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-3677]
gi|423019310|ref|ZP_17010019.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4404]
gi|423024476|ref|ZP_17015173.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4522]
gi|423030293|ref|ZP_17020981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4623]
gi|423038125|ref|ZP_17028799.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423043245|ref|ZP_17033912.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423044987|ref|ZP_17035648.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423053520|ref|ZP_17042328.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423060484|ref|ZP_17049280.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423705819|ref|ZP_17680202.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B799]
gi|429719342|ref|ZP_19254281.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429724685|ref|ZP_19259552.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429776390|ref|ZP_19308372.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02030]
gi|429781165|ref|ZP_19313097.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429783424|ref|ZP_19315340.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02092]
gi|429790796|ref|ZP_19322654.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02093]
gi|429796528|ref|ZP_19328347.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02281]
gi|429798221|ref|ZP_19330023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02318]
gi|429806734|ref|ZP_19338462.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02913]
gi|429811082|ref|ZP_19342783.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03439]
gi|429817154|ref|ZP_19348796.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-04080]
gi|429822365|ref|ZP_19353964.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03943]
gi|429912882|ref|ZP_19378838.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429913754|ref|ZP_19379702.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429918796|ref|ZP_19384729.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429924603|ref|ZP_19390517.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429928541|ref|ZP_19394443.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935093|ref|ZP_19400980.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429940764|ref|ZP_19406638.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429948397|ref|ZP_19414252.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951042|ref|ZP_19416890.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429954338|ref|ZP_19420174.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432750286|ref|ZP_19984893.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE29]
gi|432809476|ref|ZP_20043369.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE101]
gi|157079714|gb|ABV19422.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli
E24377A]
gi|253324254|gb|ACT28856.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|257759328|dbj|BAI30825.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|300418923|gb|EFK02234.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
182-1]
gi|300463153|gb|EFK26646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
187-1]
gi|300845847|gb|EFK73607.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
78-1]
gi|323961889|gb|EGB57488.1| NOL1/NOP2/sun family protein [Escherichia coli H489]
gi|354861602|gb|EHF22040.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C236-11]
gi|354868955|gb|EHF29367.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. C227-11]
gi|354871051|gb|EHF31451.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 04-8351]
gi|354881451|gb|EHF41781.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-3677]
gi|354891169|gb|EHF51404.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4404]
gi|354894002|gb|EHF54199.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4522]
gi|354896149|gb|EHF56325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354899124|gb|EHF59274.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4623]
gi|354900859|gb|EHF60991.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354913888|gb|EHF73876.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354917617|gb|EHF77580.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354919558|gb|EHF79501.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|371599105|gb|EHN87895.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
H494]
gi|385539556|gb|EIF86388.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
M919]
gi|385713211|gb|EIG50147.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B799]
gi|429346269|gb|EKY83049.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02030]
gi|429348110|gb|EKY84881.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429354811|gb|EKY91507.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02092]
gi|429363011|gb|EKY99655.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02093]
gi|429364910|gb|EKZ01528.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02281]
gi|429366634|gb|EKZ03236.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02318]
gi|429377098|gb|EKZ13623.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-02913]
gi|429381609|gb|EKZ18094.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03943]
gi|429384635|gb|EKZ21092.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-03439]
gi|429393308|gb|EKZ29704.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. 11-04080]
gi|429393999|gb|EKZ30385.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429407518|gb|EKZ43771.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429408375|gb|EKZ44613.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409821|gb|EKZ46047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429426509|gb|EKZ62598.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429426915|gb|EKZ63002.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429431479|gb|EKZ67528.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429433880|gb|EKZ69910.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429440841|gb|EKZ76818.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429444419|gb|EKZ80365.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429450048|gb|EKZ85946.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429453909|gb|EKZ89777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
O104:H4 str. Ec11-9941]
gi|431297203|gb|ELF86861.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE29]
gi|431362244|gb|ELG48822.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE101]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|417231665|ref|ZP_12033063.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0959]
gi|386204664|gb|EII09175.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0959]
Length = 506
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 55 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 111
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 112 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 171
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 172 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 219
>gi|170683942|ref|YP_001743410.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
SMS-3-5]
gi|170521660|gb|ACB19838.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
SMS-3-5]
Length = 481
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|398796683|ref|ZP_10556170.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. YR343]
gi|398202685|gb|EJM89524.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. YR343]
Length = 474
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL ++R NTLK D N G L PI W G I + ++P+G+ E+
Sbjct: 32 SQQPLRRSLRVNTLKISVEDFLARTANYGWRLSPI-PWCAEGFWIERDDESLPLGSVAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AALM+N G + AN+ S
Sbjct: 91 LSGLFYIQEASSMLPVTALFDAAPDARQVMDVAAAPGSKTTQMAALMRNEGAILANEYSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE +A++
Sbjct: 151 SRVKVLHANISRCGVSNVALTHFDGRVFGAALPERFDAIL 190
>gi|417629008|ref|ZP_12279248.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_MHI813]
gi|345374222|gb|EGX06175.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_MHI813]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|416281592|ref|ZP_11645900.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii
ATCC 9905]
gi|320181122|gb|EFW56041.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii
ATCC 9905]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNTPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|417121380|ref|ZP_11970808.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0246]
gi|386148232|gb|EIG94669.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
97.0246]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|417602427|ref|ZP_12252997.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_94C]
gi|345350093|gb|EGW82368.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_94C]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|415809119|ref|ZP_11501920.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
LT-68]
gi|323175088|gb|EFZ60702.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
LT-68]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|257096822|sp|B2U477.2|RSMF_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|417681615|ref|ZP_12330989.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
3594-74]
gi|420352875|ref|ZP_14854003.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
4444-74]
gi|146325704|sp|Q321Y0.2|RSMF_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|332096600|gb|EGJ01594.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
3594-74]
gi|391280662|gb|EIQ39328.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
4444-74]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|194439069|ref|ZP_03071152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
101-1]
gi|194422028|gb|EDX38032.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
101-1]
Length = 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|191168496|ref|ZP_03030283.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B7A]
gi|193066047|ref|ZP_03047104.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E22]
gi|194429657|ref|ZP_03062175.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B171]
gi|218695401|ref|YP_002403068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
55989]
gi|251785283|ref|YP_002999587.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)]
gi|254161895|ref|YP_003045003.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B
str. REL606]
gi|254288683|ref|YP_003054431.1| methyltransferase [Escherichia coli BL21(DE3)]
gi|386614391|ref|YP_006134057.1| hypothetical protein UMNK88_2306 [Escherichia coli UMNK88]
gi|407469636|ref|YP_006783921.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407481700|ref|YP_006778849.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410482249|ref|YP_006769795.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|415805167|ref|ZP_11501376.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
E128010]
gi|415825911|ref|ZP_11513267.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1357]
gi|416346857|ref|ZP_11679948.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4100B]
gi|417132416|ref|ZP_11977201.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0588]
gi|417155758|ref|ZP_11993887.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.0497]
gi|417172282|ref|ZP_12002315.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2608]
gi|417187714|ref|ZP_12012380.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
93.0624]
gi|417222802|ref|ZP_12026242.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.154]
gi|417247598|ref|ZP_12040354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
9.0111]
gi|417252317|ref|ZP_12044080.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0967]
gi|417581312|ref|ZP_12232117.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_B2F1]
gi|417623569|ref|ZP_12273874.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_H.1.8]
gi|417667223|ref|ZP_12316771.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_O31]
gi|417805354|ref|ZP_12452310.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. LB226692]
gi|417865288|ref|ZP_12510332.1| hypothetical protein C22711_2220 [Escherichia coli O104:H4 str.
C227-11]
gi|419142535|ref|ZP_13687282.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6A]
gi|419148387|ref|ZP_13693060.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6B]
gi|419278211|ref|ZP_13820465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10E]
gi|419289729|ref|ZP_13831824.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11A]
gi|419295062|ref|ZP_13837108.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11B]
gi|419300381|ref|ZP_13842382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11C]
gi|419306478|ref|ZP_13848382.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11D]
gi|419311503|ref|ZP_13853370.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11E]
gi|419316860|ref|ZP_13858672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12A]
gi|419322990|ref|ZP_13864696.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12B]
gi|419328980|ref|ZP_13870595.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12C]
gi|419334530|ref|ZP_13876074.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12D]
gi|419340095|ref|ZP_13881570.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12E]
gi|419345451|ref|ZP_13886829.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13A]
gi|419349872|ref|ZP_13891216.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13B]
gi|419355267|ref|ZP_13896529.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13C]
gi|419360292|ref|ZP_13901513.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13D]
gi|419365370|ref|ZP_13906536.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13E]
gi|419370239|ref|ZP_13911360.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14A]
gi|419375709|ref|ZP_13916738.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14B]
gi|419381025|ref|ZP_13921981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14C]
gi|419386299|ref|ZP_13927180.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14D]
gi|419869471|ref|ZP_14391675.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H2 str. CVM9450]
gi|420391517|ref|ZP_14890774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPEC C342-62]
gi|442598221|ref|ZP_21015994.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|450215327|ref|ZP_21895547.1| methyltransferase [Escherichia coli O08]
gi|254766864|sp|B7L7N7.1|RSMF_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096803|sp|A7ZMV8.2|RSMF_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|190901449|gb|EDV61211.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B7A]
gi|192926284|gb|EDV80921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
E22]
gi|194412299|gb|EDX28603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B171]
gi|218352133|emb|CAU97871.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
55989]
gi|242377556|emb|CAQ32311.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)]
gi|253973796|gb|ACT39467.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253977990|gb|ACT43660.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
gi|320198015|gb|EFW72623.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
EC4100B]
gi|323158681|gb|EFZ44695.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
E128010]
gi|323186416|gb|EFZ71764.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
OK1357]
gi|332343560|gb|AEE56894.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|340740257|gb|EGR74482.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. LB226692]
gi|341918577|gb|EGT68190.1| hypothetical protein C22711_2220 [Escherichia coli O104:H4 str.
C227-11]
gi|345339935|gb|EGW72360.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_B2F1]
gi|345379481|gb|EGX11393.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_H.1.8]
gi|377994913|gb|EHV58034.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6B]
gi|377996844|gb|EHV59952.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC6A]
gi|378129210|gb|EHW90582.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC10E]
gi|378131660|gb|EHW93017.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11A]
gi|378142149|gb|EHX03351.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11B]
gi|378149913|gb|EHX11033.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11D]
gi|378151760|gb|EHX12867.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11C]
gi|378158604|gb|EHX19622.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC11E]
gi|378167353|gb|EHX28266.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12B]
gi|378170845|gb|EHX31720.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12A]
gi|378172253|gb|EHX33110.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12C]
gi|378186743|gb|EHX47366.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12D]
gi|378187369|gb|EHX47981.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13A]
gi|378190017|gb|EHX50603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC12E]
gi|378201992|gb|EHX62432.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13C]
gi|378202233|gb|EHX62672.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13B]
gi|378205222|gb|EHX65637.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13D]
gi|378214034|gb|EHX74343.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC13E]
gi|378218626|gb|EHX78897.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14A]
gi|378220633|gb|EHX80885.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14B]
gi|378229014|gb|EHX89164.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14C]
gi|378232122|gb|EHX92224.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
DEC14D]
gi|386150270|gb|EIH01559.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
5.0588]
gi|386168847|gb|EIH35363.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.0497]
gi|386179980|gb|EIH57454.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
3.2608]
gi|386181371|gb|EIH64134.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
93.0624]
gi|386202604|gb|EII01595.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
96.154]
gi|386208965|gb|EII19456.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
9.0111]
gi|386217892|gb|EII34377.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
4.0967]
gi|388342676|gb|EIL08710.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H2 str. CVM9450]
gi|391313282|gb|EIQ70875.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
EPEC C342-62]
gi|397785470|gb|EJK96320.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_O31]
gi|406777411|gb|AFS56835.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053997|gb|AFS74048.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407065671|gb|AFS86718.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|441653234|emb|CCQ01697.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|449318976|gb|EMD09033.1| methyltransferase [Escherichia coli O08]
Length = 479
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|422790919|ref|ZP_16843623.1| NOL1/NOP2/sun family protein [Escherichia coli TA007]
gi|323972658|gb|EGB67861.1| NOL1/NOP2/sun family protein [Escherichia coli TA007]
Length = 481
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|218699594|ref|YP_002407223.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
IAI39]
gi|386624462|ref|YP_006144190.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O7:K1 str. CE10]
gi|226725335|sp|B7NS84.1|RSMF_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218369580|emb|CAR17349.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
IAI39]
gi|349738200|gb|AEQ12906.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O7:K1 str. CE10]
Length = 479
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|194434523|ref|ZP_03066782.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 1012]
gi|417672336|ref|ZP_12321807.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 155-74]
gi|420347080|ref|ZP_14848486.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
965-58]
gi|194417235|gb|EDX33345.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 1012]
gi|332093311|gb|EGI98370.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 155-74]
gi|391272172|gb|EIQ31029.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
965-58]
Length = 479
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|423140349|ref|ZP_17127987.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
gi|379052903|gb|EHY70794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
Length = 513
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALTAPYGWSLTPI-PWCDEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNH 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|416305293|ref|ZP_11654253.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CDC 796-83]
gi|420325197|ref|ZP_14826965.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CCH060]
gi|421682206|ref|ZP_16122020.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1485-80]
gi|320183016|gb|EFW57882.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CDC 796-83]
gi|391253632|gb|EIQ12803.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
CCH060]
gi|404340678|gb|EJZ67096.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1485-80]
Length = 479
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|419865517|ref|ZP_14387899.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H25 str. CVM9340]
gi|388337283|gb|EIL03785.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
O103:H25 str. CVM9340]
Length = 479
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|301025409|ref|ZP_07188961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
196-1]
gi|299880085|gb|EFI88296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
196-1]
Length = 464
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 13 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 69
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 70 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 129
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 130 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 177
>gi|451975771|ref|ZP_21926952.1| ribosomal RNA small subunit methyltransferase F [Vibrio
alginolyticus E0666]
gi|451930285|gb|EMD77998.1| ribosomal RNA small subunit methyltransferase F [Vibrio
alginolyticus E0666]
Length = 478
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERADAKGWKLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV NS ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANVERCGVRNSALSNFDGRVFGGWLPEQFDAVL 190
>gi|417149853|ref|ZP_11989771.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2264]
gi|386160865|gb|EIH22670.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2264]
Length = 479
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|432371973|ref|ZP_19615023.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE11]
gi|430898302|gb|ELC20437.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE11]
Length = 493
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L P+ W K G I +
Sbjct: 42 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTEPYGWTLTPV-PWCKEGFWIERDDEEAL 98
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGV 98
P+G+T E+L G + +Q AS A P R +A AA M N G
Sbjct: 99 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAASMNNEGA 158
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 159 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 206
>gi|257096807|sp|B1LD37.2|RSMF_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|284161602|ref|YP_003400225.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284011599|gb|ADB57552.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
5631]
Length = 321
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLV--IYNSTVPI 58
+ +EA E P IR NT+K DL + L RG L+ ++V + I
Sbjct: 38 VKLIEAMERGIPKHIRVNTIKIDENDLIERLRERGFKLEK----TEVPFCYKVVEEPYSI 93
Query: 59 GATPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFAN 102
GATPEYL G+Y + S + AP A LM N GVL A
Sbjct: 94 GATPEYLMGYYYVMEKSSCIPPLVLNPKSNELVADFASAPGGKTTFLAQLMNNRGVLIAI 153
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+ +KER +A++ N HR+GV+N+ V ++ ++
Sbjct: 154 EANKERIQALIDNIHRMGVLNTAVIHMNAVRF 185
>gi|323498366|ref|ZP_08103366.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis
DSM 21326]
gi|323316608|gb|EGA69619.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis
DSM 21326]
Length = 474
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK D + L P+ W G I S+VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISIDDFLSRAAEKNWVLSPV-PWCPEGFWIEADESSVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
+ G + +Q AS AP AA M N GVL AN+ S
Sbjct: 91 MSGLFYIQEASSMMPVSALFLSSEDEFTSVLDMAAAPGSKTTQIAAKMGNDGVLVANEFS 150
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+V++ DGR +G PE+ EAV+
Sbjct: 151 SSRVKVLHANIERCGVRNTVLSNYDGRVFGGWLPEQFEAVL 191
>gi|260778560|ref|ZP_05887452.1| ribosomal RNA small subunit methyltransferase F [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604724|gb|EEX31019.1| ribosomal RNA small subunit methyltransferase F [Vibrio
coralliilyticus ATCC BAA-450]
Length = 463
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q +G L P+ W + G I S P+G T E+
Sbjct: 21 CQRPLRKSIRVNTLKISISEFTQRAQEKGWQLSPV-PWCEEGFWIEADESETPLGNTAEH 79
Query: 65 LGGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
+ G + +Q AS AP AA M N GVL AN+ S
Sbjct: 80 MSGLFYIQEASSMMPVSALFQDQNDDFLSVLDMAAAPGSKTTQIAAEMDNLGVLVANEFS 139
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 140 SSRVKVLHANIERCGVRNAALSNYDGRVFGGWLPEQFDAVL 180
>gi|91227972|ref|ZP_01262082.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01]
gi|91188293|gb|EAS74591.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01]
Length = 478
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAETKGWKLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANVERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|389852628|ref|YP_006354862.1| hypothetical protein Py04_1213 [Pyrococcus sp. ST04]
gi|388249934|gb|AFK22787.1| hypothetical protein Py04_1213 [Pyrococcus sp. ST04]
Length = 309
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTLKT +L + L+ +G + W++ G + I +TPEY
Sbjct: 31 EAMEKPLPRCFRVNTLKTSIAELTKRLMKKGFQFRKV-PWAREGFCLTREPFSITSTPEY 89
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A + LM+N G+++A DV +ER
Sbjct: 90 LTGLIYIQEASSMYPPVALEPRPGEIIADMAAAPGGKASYISQLMENKGIIYAFDVGEER 149
Query: 109 SKAIVGNFHRLGVINSVV 126
K N RLGVIN+++
Sbjct: 150 LKETRLNLSRLGVINTIL 167
>gi|312881594|ref|ZP_07741372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309370657|gb|EFP98131.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 474
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGATP 62
S QRPL +IR NTLK+ D +G +++ I W K G + P+G+T
Sbjct: 30 SACQRPLRKSIRVNTLKSSISDFMTLAKAKGWHIEQI-PWCKDGFWVDLDEEQTPLGSTA 88
Query: 63 EYLGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDV 104
E+L G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHLSGLFYIQEASSMIPVSALFSDSTKLQSVLDMAAAPGSKTTQIAALMGNKGVLIANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R KA+ N R G+ N+ ++ DG +G PE +AV+
Sbjct: 149 SASRVKALHANIERCGIRNTALSNFDGEVFGSWLPEAFDAVL 190
>gi|300938813|ref|ZP_07153523.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
21-1]
gi|432680414|ref|ZP_19915791.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE143]
gi|300456246|gb|EFK19739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
21-1]
gi|431221344|gb|ELF18665.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE143]
Length = 481
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANICRCGISNVALTHFDGRVFGAALPEMFDAIL 194
>gi|262275788|ref|ZP_06053597.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
CIP 101886]
gi|262219596|gb|EEY70912.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
CIP 101886]
Length = 476
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYN---STV 56
F+EA +RPL ++R NTLK D + +G L P+ W G + + TV
Sbjct: 27 DFIEA--CKRPLRRSLRVNTLKISVADFLERANEKGWKLSPV-PWCDTGFWLDDYDEDTV 83
Query: 57 PIGATPEYLGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGV 98
P+G T E++ G + +Q AS AP AA + N GV
Sbjct: 84 PLGNTAEHMAGLFYIQEASSMLPVTALLQNTTELEYVLDMAAAPGSKTTQIAAALNNNGV 143
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
L AN+ S R K + N R GV+N+ +T DGR +G PE +AV+
Sbjct: 144 LVANEYSASRVKVLHANLLRCGVLNTALTNYDGRVFGGWLPEMFDAVL 191
>gi|218548605|ref|YP_002382396.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
fergusonii ATCC 35469]
gi|226725339|sp|B7LPL0.1|RSMF_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|218356146|emb|CAQ88763.1| putative RNA AdoMet-dependent methyltransferase [Escherichia
fergusonii ATCC 35469]
Length = 479
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 192
>gi|422799120|ref|ZP_16847619.1| NOL1/NOP2/sun family protein [Escherichia coli M863]
gi|323968602|gb|EGB64008.1| NOL1/NOP2/sun family protein [Escherichia coli M863]
Length = 481
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERNDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|269967589|ref|ZP_06181641.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B]
gi|269827827|gb|EEZ82109.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B]
Length = 518
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 70 ASCQKPLRKSIRVNTLKISVEAFLERAETKGWKLSPV-PWCDTGFWIEADESVVPLGNTA 128
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 129 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 188
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 189 AASRVKVLHANVERCGVRNAALSNFDGRVFGGWLPEQFDAVL 230
>gi|424038755|ref|ZP_17777275.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-02]
gi|408893764|gb|EKM30856.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-02]
Length = 478
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + ++G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVETFLERAESKGWTLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMDDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFNAVL 190
>gi|422973383|ref|ZP_16975767.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TA124]
gi|371597136|gb|EHN85961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
TA124]
Length = 481
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|432882072|ref|ZP_20098152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE154]
gi|431411578|gb|ELG94689.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE154]
Length = 481
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 194
>gi|432861964|ref|ZP_20086724.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE146]
gi|431405711|gb|ELG88944.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE146]
Length = 481
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|416897755|ref|ZP_11927403.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_7v]
gi|327252957|gb|EGE64611.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
STEC_7v]
Length = 479
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERNDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|422781264|ref|ZP_16834049.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509]
gi|323977982|gb|EGB73068.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509]
Length = 479
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|424032440|ref|ZP_17771858.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-01]
gi|408875918|gb|EKM15056.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-01]
Length = 478
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + ++G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAESKGWMLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMDDESFDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|417115847|ref|ZP_11966983.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2741]
gi|386141266|gb|EIG82418.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
1.2741]
Length = 479
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERNDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|300917592|ref|ZP_07134245.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
115-1]
gi|432531210|ref|ZP_19768239.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE233]
gi|300415192|gb|EFJ98502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
115-1]
gi|431054438|gb|ELD64008.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE233]
Length = 481
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 194
>gi|157161302|ref|YP_001458620.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli HS]
gi|170019820|ref|YP_001724774.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli ATCC
8739]
gi|157066982|gb|ABV06237.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli HS]
gi|169754748|gb|ACA77447.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli ATCC 8739]
Length = 481
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 194
>gi|331673368|ref|ZP_08374136.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA280]
gi|331069566|gb|EGI40953.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
m5C1407methyltransferase) [Escherichia coli TA280]
Length = 481
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|293410145|ref|ZP_06653721.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B354]
gi|291470613|gb|EFF13097.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B354]
Length = 479
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|425288712|ref|ZP_18679580.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3006]
gi|425305384|ref|ZP_18695126.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
N1]
gi|408214880|gb|EKI39288.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
3006]
gi|408229366|gb|EKI52798.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
N1]
Length = 479
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 192
>gi|417517886|ref|ZP_12180373.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|353650593|gb|EHC92914.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
Length = 513
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P + +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQQVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|312969872|ref|ZP_07784055.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
1827-70]
gi|257096804|sp|A8A133.2|RSMF_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096805|sp|B1J0Q3.2|RSMF_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|310338157|gb|EFQ03246.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
1827-70]
Length = 479
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 192
>gi|432392241|ref|ZP_19635081.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE21]
gi|430920058|gb|ELC40978.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE21]
Length = 481
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAFYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 194
>gi|269962312|ref|ZP_06176663.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
gi|269832972|gb|EEZ87080.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
Length = 478
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W + G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCETGFWIDADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNNESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|423686021|ref|ZP_17660829.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri SR5]
gi|371494089|gb|EHN69687.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri SR5]
Length = 473
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
+RPL +IR NTLK + Q V + +L+P+ W G I + TV +G+T E+
Sbjct: 33 KRPLRRSIRVNTLKNSVEEFKQRAVEKQWDLEPV-PWCDTGFWITRPESDTVKLGSTAEH 91
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA MKN G L AN+ S
Sbjct: 92 MAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGALVANEFSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE ++++
Sbjct: 152 SRVKVLCSNIQRCGVSNVALTHFDGRVFGGWLPETFDSIL 191
>gi|424045800|ref|ZP_17783364.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-03]
gi|408885895|gb|EKM24600.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-03]
Length = 478
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W + G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCETGFWIDADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNNESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|146325701|sp|Q0HJM6.2|RSMF_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 481
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D Q + +G DPI W + G I Y+ +G E++ G
Sbjct: 31 RPLRRSIRVNTLKISSEDFKQLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNALEHIQG 89
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 90 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 149
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 150 KVLHANVLRMGASHCALTHFDGRVFGE 176
>gi|417790909|ref|ZP_12438421.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
E899]
gi|449307912|ref|YP_007440268.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
SP291]
gi|333955001|gb|EGL72791.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
E899]
gi|449097945|gb|AGE85979.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
SP291]
Length = 464
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W G I +P+G+T
Sbjct: 16 AACQRPLRRSIRVNTLKISVADFLAQVAPYGWQLTPV-PWCPEGFWIERDDEDALPLGST 74
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AALM+N G + AN+
Sbjct: 75 AEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANE 134
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ A++
Sbjct: 135 YSASRVKVLHANISRCGIHNVGLTHFDGRVFGAALPEQFNAIL 177
>gi|113970005|ref|YP_733798.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. MR-4]
gi|113884689|gb|ABI38741.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. MR-4]
Length = 509
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D Q + +G DPI W + G I Y+ +G E++ G
Sbjct: 59 RPLRRSIRVNTLKISSEDFKQLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNALEHIQG 117
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 118 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 177
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 178 KVLHANVLRMGASHCALTHFDGRVFGE 204
>gi|257096824|sp|A7N0K6.2|RSMF_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 478
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCNTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|156974634|ref|YP_001445541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio harveyi ATCC
BAA-1116]
gi|156526228|gb|ABU71314.1| hypothetical protein VIBHAR_02352 [Vibrio harveyi ATCC BAA-1116]
Length = 501
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 53 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCNTGFWIEADESVVPLGNTA 111
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 112 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 171
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 172 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 213
>gi|444426628|ref|ZP_21222039.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|444240121|gb|ELU51669.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 478
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCNTGFWIKADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|449144037|ref|ZP_21774855.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio mimicus CAIM
602]
gi|449080361|gb|EMB51277.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio mimicus CAIM
602]
Length = 473
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 70/160 (43%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK D + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVADFCLRAAEKNWQLSPV-PWCENGFWIEADESQVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMDHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALTNFDGCVFGGWLPERFDAVL 190
>gi|153835218|ref|ZP_01987885.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
gi|148868284|gb|EDL67416.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
Length = 478
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCNTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|301645651|ref|ZP_07245579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
146-1]
gi|301076080|gb|EFK90886.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
146-1]
Length = 481
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCGEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|423120918|ref|ZP_17108602.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5246]
gi|376395548|gb|EHT08194.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5246]
Length = 462
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL ++R NTLK D Q + G L PI W + G I ++P+G+T E+
Sbjct: 19 QRPLRRSLRVNTLKISVADFLQQVAPYGWQLTPI-PWCEEGFWIERDDEDSLPLGSTAEH 77
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFANDVSK 106
L G + +Q AS A P R +A AA M N G + AN+ S
Sbjct: 78 LSGLFYIQEASSMLPVAALFADGDMPQRVMDVAAAPGSKTTQIAARMGNKGGILANEFSA 137
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 138 SRVKVLHANISRCGISNVALTHFDGRVFGAALPERFDAIL 177
>gi|148980382|ref|ZP_01816025.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3]
gi|145961254|gb|EDK26566.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3]
Length = 449
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK D ++G L+P+ W + G I + P+G +
Sbjct: 6 ASCQKPLRKSIRVNTLKISVEDFLVRAKDKGWELEPV-PWCETGFWITADETETPLGNSA 64
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 65 EHMSGLFYIQEASSMMPPSALFQGEENYQAVLDTAAAPGSKTTQIAALMDNRGVLVANEY 124
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 125 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 166
>gi|168234498|ref|ZP_02659556.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205331591|gb|EDZ18355.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 479
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIEPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPLRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>gi|424816001|ref|ZP_18241152.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
fergusonii ECD227]
gi|325497021|gb|EGC94880.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
fergusonii ECD227]
Length = 479
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
S QRPL +IR NTLK D Q L PI W + G I +P+G+T
Sbjct: 31 SACQRPLRRSIRVNTLKISVADFLQLTATYNWTLTPI-PWCEEGFWIERDDEDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWIC--------APHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS AP R +A AA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|194469686|ref|ZP_03075670.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194456050|gb|EDX44889.1| ribosomal RNA small subunit methyltransferase F [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
Length = 513
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIEPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPLRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 226
>gi|336251008|ref|YP_004594718.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
aerogenes KCTC 2190]
gi|334737064|gb|AEG99439.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
aerogenes KCTC 2190]
Length = 477
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D Q + G L P+ W G I + +P+G+T E+
Sbjct: 34 QRPLRRSIRVNTLKITVADFLQLVAPYGWQLTPV-PWCAEGFWIERDDDDVLPLGSTAEH 92
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFANDVSK 106
L G + +Q AS A P R +A AA M N G + AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGEMPERVMDVAAAPGSKTTQIAARMSNHGAILANEFSA 152
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 153 SRVKVLHANISRCGINNVALTHFDGRVFGAALPECFDAIL 192
>gi|388601384|ref|ZP_10159780.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
DS40M4]
Length = 478
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCNTGFWIKADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R G+ N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGIRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|157375779|ref|YP_001474379.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sediminis
HAW-EB3]
gi|254766868|sp|A8FWM8.1|RSMF_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|157318153|gb|ABV37251.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sediminis
HAW-EB3]
Length = 478
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPE 63
S + +PL +IR NTLK +D + +G L+PI W + G I +S V +G T E
Sbjct: 27 SYSSKPLRPSIRINTLKISSQDFIALMAPKGWTLEPI-PWCQDGFWISLDSDVQLGNTVE 85
Query: 64 YLGGHYILQGASKY--------------------WICAPHRAAKLAAALMKNTGVLFAND 103
+L G + +Q AS AP AA+M N+G+L AN+
Sbjct: 86 HLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAPGSKTTQIAAMMDNSGLLIANE 145
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K + N R+GV N+ +T D R +G+
Sbjct: 146 YSSSRVKVLHANVLRMGVSNTALTHFDARVFGE 178
>gi|444350859|ref|YP_007387003.1| Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|443901689|emb|CCG29463.1| Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 458
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPE 63
QRPL +IR NTLK D Q + G L PI W G I + +P+G+T E
Sbjct: 14 CQRPLRRSIRVNTLKITVADFLQLVAPYGWQLTPI-PWCAEGFWIERDDDDVLPLGSTAE 72
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS A P R +AAA M N G + AN+ S
Sbjct: 73 HLSGLFYIQEASSMLPVAALFADGEMPERVMDVAAAPGSKTTQIAARMGNHGAILANEFS 132
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 133 ASRVKVLHANISRCGINNVALTHFDGRVFGAALPECFDAIL 173
>gi|262394196|ref|YP_003286050.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25]
gi|262337790|gb|ACY51585.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25]
Length = 478
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERADAKGWKLSPV-PWCDTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANVERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|163800839|ref|ZP_02194739.1| Sun/nucleolar protein family protein [Vibrio sp. AND4]
gi|159175188|gb|EDP59985.1| Sun/nucleolar protein family protein [Vibrio sp. AND4]
Length = 478
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W + G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVDAFLERADAKGWKLSPV-PWCETGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N G+L AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMTNETFDSVLDTAAAPGSKTTQIAALMNNEGILVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|293415150|ref|ZP_06657793.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B185]
gi|291432798|gb|EFF05777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
B185]
Length = 479
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
+ AN+ S R K + N R G+ N +T DGR +G
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG 181
>gi|114047240|ref|YP_737790.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. MR-7]
gi|113888682|gb|ABI42733.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. MR-7]
Length = 510
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D Q ++ +G +PI W + G I Y+ +G E++ G
Sbjct: 59 RPLRRSIRVNTLKISSEDFKQLMLPKGWTFEPI-PWCEDGFWISYDEEEQLGNALEHIQG 117
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 118 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 177
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 178 KVLHANVLRMGASHCALTHFDGRVFGE 204
>gi|146325702|sp|Q0HVX2.2|RSMF_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 482
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D Q ++ +G +PI W + G I Y+ +G E++ G
Sbjct: 31 RPLRRSIRVNTLKISSEDFKQLMLPKGWTFEPI-PWCEDGFWISYDEEEQLGNALEHIQG 89
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 90 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 149
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 150 KVLHANVLRMGASHCALTHFDGRVFGE 176
>gi|254230456|ref|ZP_04923834.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp.
Ex25]
gi|151937027|gb|EDN55907.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp.
Ex25]
Length = 518
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 70 ASCQKPLRKSIRVNTLKISVEAFLERADAKGWKLSPV-PWCDTGFWIEADESVVPLGNTA 128
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 129 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 188
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 189 AASRVKVLHANVERCGVRNAALSNFDGRVFGGWLPEQFDAVL 230
>gi|429087014|ref|ZP_19149746.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
universalis NCTC 9529]
gi|426506817|emb|CCK14858.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
universalis NCTC 9529]
Length = 480
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK + + G L P+ W G I +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVAEFLAQVAPYGWQLTPV-PWCPEGFWIERDDEDALPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA LM+N G + AN+
Sbjct: 91 AEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 YSASRVKVLHANISRCGIRNVGLTHFDGRVFGAALPEQFDAIL 193
>gi|350531222|ref|ZP_08910163.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio rotiferianus
DAT722]
Length = 478
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W + G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWTLFPV-PWCETGFWIEADESIVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|309788247|ref|ZP_07682851.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 1617]
gi|146325705|sp|Q32F19.2|RSMF_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|308923629|gb|EFP69132.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
dysenteriae 1617]
Length = 479
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLRLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWIC--------APHRAAKLA----------AALMKNTGV 98
P+G+T E+L G + +Q AS AP R +A AA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNNEGT 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|422805845|ref|ZP_16854277.1| NOL1/NOP2/sun family protein [Escherichia fergusonii B253]
gi|324113570|gb|EGC07545.1| NOL1/NOP2/sun family protein [Escherichia fergusonii B253]
Length = 479
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
S QRPL +IR NTLK D Q L PI W + G I +P+G+T
Sbjct: 31 SACQRPLRRSIRVNTLKISVADFLQLTAPYNWTLTPI-PWCEEGFWIERDDEDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGAILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>gi|82777228|ref|YP_403577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella dysenteriae
Sd197]
gi|81241376|gb|ABB62086.1| putative nucleolar proteins [Shigella dysenteriae Sd197]
Length = 481
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D + G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLRLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWIC--------APHRAAKLA----------AALMKNTGV 98
P+G+T E+L G + +Q AS AP R +A AA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNNEGT 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|440759575|ref|ZP_20938708.1| Ribosomal RNA small subunit methyltransferase F [Pantoea
agglomerans 299R]
gi|436426644|gb|ELP24348.1| Ribosomal RNA small subunit methyltransferase F [Pantoea
agglomerans 299R]
Length = 475
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL +IR NTLK D G L P+ W + G I + ++P+G+ E+
Sbjct: 33 SQQPLRRSIRVNTLKISVADFLSQTAGYGWQLTPV-PWCEEGFWISREDESLPLGSVAEH 91
Query: 65 LGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA M N GV+ AN+ S
Sbjct: 92 LSGLFYIQEASSMLPVTALFDAQPEVSAVMDMAAAPGSKTTQIAARMGNQGVILANEFSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS +T D R +G PE+ +A++
Sbjct: 152 SRVKVLHANISRCGVSNSALTHFDARVFGPALPEQFDAIL 191
>gi|317048471|ref|YP_004116119.1| RNA methylase [Pantoea sp. At-9b]
gi|316950088|gb|ADU69563.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. At-9b]
Length = 472
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGATPEY 64
+Q+PL ++R NTLK D + G L PI W G I + ++P+G+ E+
Sbjct: 30 SQQPLRRSLRVNTLKISVADFLAQTADYGWRLTPI-PWCAEGFWIDRDDESLPLGSVAEH 88
Query: 65 LGGHYILQGASKY------WICAP--HRAAKLA----------AALMKNTGVLFANDVSK 106
L G + +Q AS + AP H+ +A AALM N G + AN+ S
Sbjct: 89 LSGLFYIQEASSMLPVAALFDAAPDAHQVMDVAAAPGSKTTQIAALMHNQGAILANEYSA 148
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE+ +A++
Sbjct: 149 SRVKVLHANISRCGVSNVALTHFDGRVFGAALPEQFDAIL 188
>gi|163752559|ref|ZP_02159743.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99]
gi|161327555|gb|EDP98755.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99]
Length = 491
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 24/151 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYL 65
+ RPL +IR NTLK + + + +G L+PI W G I +S V +G T E+L
Sbjct: 42 SSRPLRASIRVNTLKISSANFIELMQPKGWTLEPI-PWCSDGFWISLDSEVQLGNTIEHL 100
Query: 66 GGHYILQGASKY--------------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
G + +Q AS AP AALM N+G+L AN+ S
Sbjct: 101 QGLFYIQEASSMLPPTALFSQLNETDNATILDMAAAPGSKTTQLAALMNNSGLLIANEYS 160
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K + N R+GV N+ +T D R +G+
Sbjct: 161 SSRVKVLHANVQRMGVSNTALTHFDARVFGE 191
>gi|429095941|ref|ZP_19158047.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 582]
gi|426282281|emb|CCJ84160.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 582]
Length = 479
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL +IR NTLK + + G L P+ W G I + +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVEAFLAQVESYGWQLTPV-PWCAEGFWIARDDEALPLGSTA 90
Query: 63 EYLGGHYILQGASKYWIC--------APHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS AP R +AAA LM+N G + AN+
Sbjct: 91 EHLSGLFYIQEASSMLPVTALFADGNAPERVMDVAAAPGSKTTQIAALMQNQGFILANEY 150
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 SASRVKVLHANISRCGIRNVGLTHFDGRVFGAALPEQFDAIL 192
>gi|432485589|ref|ZP_19727505.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE212]
gi|432670914|ref|ZP_19906445.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE119]
gi|433173697|ref|ZP_20358231.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE232]
gi|431015986|gb|ELD29533.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE212]
gi|431210988|gb|ELF08971.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE119]
gi|431693587|gb|ELJ58999.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE232]
Length = 481
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P + +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQQVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|429091377|ref|ZP_19154049.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 1210]
gi|426743989|emb|CCJ80162.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 1210]
Length = 479
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL +IR NTLK + + G L P+ W G I + +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVEAFLAQVESYGWQLTPV-PWCAEGFWIARDDEALPLGSTA 90
Query: 63 EYLGGHYILQGASKYWIC--------APHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS AP R +AAA LM+N G + AN+
Sbjct: 91 EHLSGLFYIQEASSMLPVTALFADGNAPERVMDVAAAPGSKTTQIAALMQNQGFILANEY 150
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 SASRVKVLHANISRCGIRNVGLTHFDGRVFGAALPEQFDAIL 192
>gi|432553792|ref|ZP_19790519.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE47]
gi|431085092|gb|ELD91215.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE47]
Length = 481
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLK D Q G L PI W + G I + +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R + N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCSISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|429105035|ref|ZP_19166904.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 681]
gi|426291758|emb|CCJ93017.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 681]
Length = 480
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK + + G L P+ W G I +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVLTFLEQVAPYGWQLTPV-PWCPEGFWIERDDEEALPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA LM+N G + AN+
Sbjct: 91 AEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 YSASRVKVLHANISRCGIRNVGLTHFDGRVFGAALPEQFDAIL 193
>gi|416260694|ref|ZP_11640304.1| Ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae CDC 74-1112]
gi|420380396|ref|ZP_14879862.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 225-75]
gi|320177052|gb|EFW52072.1| Ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae CDC 74-1112]
gi|391302357|gb|EIQ60219.1| ribosomal RNA small subunit methyltransferase F [Shigella
dysenteriae 225-75]
Length = 479
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR N LK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNALKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|304396187|ref|ZP_07378069.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB]
gi|304356556|gb|EFM20921.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB]
Length = 547
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL +IR NTLK D G L P+ W + G I + ++P+G+ E+
Sbjct: 105 SQQPLRRSIRVNTLKISVADFLSQTAGYGWQLTPV-PWCEEGFWISREDESLPLGSVAEH 163
Query: 65 LGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA M N GV+ AN+ S
Sbjct: 164 LSGLFYIQEASSMLPVTALFDTQPEVSAVMDMAAAPGSKTTQIAARMGNQGVILANEFSS 223
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS +T D R +G PE+ +A++
Sbjct: 224 SRVKVLHANISRCGVSNSALTHFDARVFGPALPEQFDAIL 263
>gi|261211631|ref|ZP_05925918.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341]
gi|260838981|gb|EEX65613.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341]
Length = 473
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + + + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCERAAEKHWQLSPV-PWCENGFWIEADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNEQYDSVLDMAAAPGSKTTQIAALMDNAGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNAALTNFDGCVFGGWLPERFDAVL 190
>gi|315229812|ref|YP_004070248.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
gi|315182840|gb|ADT83025.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
Length = 310
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTL+T L + L +G + W+K G + I +TPEY
Sbjct: 31 EAMEKPLPRCFRVNTLRTEIPKLTKLLNKKGFQFKRV-PWAKEGFCLTREPFSITSTPEY 89
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A LMKN G+++A DV +ER
Sbjct: 90 LSGLLYIQEASSMYPPIALEPKPGEVVADMAAAPGGKTSYMAQLMKNGGIIYAFDVGEER 149
Query: 109 SKAIVGNFHRLGVINSVV 126
K + N RLGV N VV
Sbjct: 150 LKEMRLNLSRLGVTNVVV 167
>gi|372277316|ref|ZP_09513352.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea sp. SL1_M5]
Length = 477
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL +IR NTLK D N L P+ W + G I + ++P+G+ E+
Sbjct: 35 SQQPLRRSIRVNTLKISVADFLSQTANYDWKLTPV-PWCEEGFWISREDESLPLGSVAEH 93
Query: 65 LGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA M N GV+ AN+ S
Sbjct: 94 LSGLFYIQEASSMLPVTALFDAQSEVSAVMDMAAAPGSKTTQIAARMGNQGVILANEFSS 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS +T D R +G PE+ +A++
Sbjct: 154 SRVKVLHANISRCGVSNSALTHFDARVFGPALPEQFDAIL 193
>gi|149191346|ref|ZP_01869599.1| m5C methyltransferase [Vibrio shilonii AK1]
gi|148834825|gb|EDL51809.1| m5C methyltransferase [Vibrio shilonii AK1]
Length = 448
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 72/159 (45%), Gaps = 25/159 (15%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
QRPL +IR NTLK D + G L I W + G I STVP+G T E++
Sbjct: 9 QRPLRKSIRVNTLKISIDDFLNKALANGWELTTI-PWCEEGFWIDADESTVPLGNTAEHM 67
Query: 66 GGHYILQGASKYW-----IC-------------APHRAAKLAAALMKNTGVLFANDVSKE 107
G + +Q AS C AP AALM N GVL AN+ +
Sbjct: 68 AGLFYIQEASSMLPPSALFCGDDKFEAVLDMAAAPGSKTTQIAALMNNEGVLVANEFAAS 127
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N ++ D R +G PE+ +A++
Sbjct: 128 RVKVLHANIERCGVSNVAMSNYDARVFGGWLPEQFDAIL 166
>gi|432369958|ref|ZP_19613047.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE10]
gi|430885585|gb|ELC08456.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE10]
Length = 481
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGV 98
P+G+T E+L G + +Q AS AP AA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPKQVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 194
>gi|343499062|ref|ZP_08737060.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii ATCC
19109]
gi|418479757|ref|ZP_13048830.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342823468|gb|EGU58094.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii ATCC
19109]
gi|384572685|gb|EIF03198.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 473
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + + +G L+ + W G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKITVDEFLERAKGKGWQLEAV-PWCHEGFWIEADESEVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA M N+GVL AN+ S
Sbjct: 91 MSGLFYIQEASSMMPVSALFQQSNEFESVLDMAAAPGSKTTQIAACMGNSGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 151 SRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>gi|311279266|ref|YP_003941497.1| RNA methylase [Enterobacter cloacae SCF1]
gi|308748461|gb|ADO48213.1| RNA methylase, NOL1/NOP2/sun family [Enterobacter cloacae SCF1]
Length = 499
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + + G L P+ W + G I VP+G+T
Sbjct: 52 AACQRPLRRSIRVNTLKISVADFLERVAPYGWQLTPV-PWCEEGFWIERNDEEDVPLGST 110
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS P R +A AA M N G + AN+
Sbjct: 111 AEHLSGLFYIQEASSMLPVTALFADGNRPQRVMDVAAAPGSKTTQIAARMGNQGAILANE 170
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 171 YSASRVKVLHANISRCGISNAALTHFDGRVFGAALPETFDAIL 213
>gi|420366928|ref|ZP_14867752.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1235-66]
gi|391323812|gb|EIQ80436.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
1235-66]
Length = 462
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL AS QRPL +IR NTLK D +L P+ W G I ++P
Sbjct: 14 FLAAS--QRPLRRSIRVNTLKISVADFLSLTAPYNWSLTPV-PWCAEGFWIERDDEESLP 70
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 71 LGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPQRVMDVAAAPGSKTTQIAAKMNNQGAI 130
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 131 LANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALPESFDAIL 177
>gi|440287221|ref|YP_007339986.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440046743|gb|AGB77801.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 490
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D + G L P+ W G I ++P+G+T E+
Sbjct: 48 QRPLRRSIRVNTLKISVADFLALVAPYGWQLTPV-PWCAEGFWIEREDEESLPLGSTAEH 106
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFANDVSK 106
L G + +Q AS A P R +A AA M N G + AN+ S
Sbjct: 107 LSGLFYIQEASSMLPVAALFTGEELPKRVMDVAAAPGSKTTQIAARMGNQGAILANEFSA 166
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 167 SRVKVLHANISRCGIANVALTHFDGRVFGAAVPESFDAIL 206
>gi|197336252|ref|YP_002156071.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri MJ11]
gi|226725346|sp|B5FE06.1|RSMF_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|197317742|gb|ACH67189.1| ribosomal RNA small subunit methyltransferase F [Vibrio fischeri
MJ11]
Length = 473
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
+RPL +IR NTLK + Q + +L+P+ W G I + TV +G+T E+
Sbjct: 33 KRPLRRSIRVNTLKNSVEEFKQRAAEKQWDLEPV-PWCDTGFWITRPESDTVKLGSTAEH 91
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA MKN G L AN+ S
Sbjct: 92 MAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGALVANEFSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE ++++
Sbjct: 152 SRVKVLCSNIQRCGVSNVALTHFDGRVFGGWLPETFDSIL 191
>gi|146325700|sp|A0KW34.2|RSMF_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 482
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLKT D + + +G +PI W + G I Y+ +G E++ G
Sbjct: 31 RPLRRSIRVNTLKTSSEDFKRLMQPKGWTFEPI-PWCEDGFWISYDEEEQLGNALEHIQG 89
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 90 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 149
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 150 KVLHANVLRMGASHCALTHFDGRVFGE 176
>gi|429110702|ref|ZP_19172472.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 507]
gi|426311859|emb|CCJ98585.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 507]
Length = 480
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK + G L P+ W G I +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVEAFLAQVAPYGWQLTPV-PWCPEGFWIERDDEEALPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA LM+N G + AN+
Sbjct: 91 AEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 YSASRVKVLHANISRCGIRNVGLTHFDGRVFGAALPEQFDAIL 193
>gi|114793858|pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793859|pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793860|pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
gi|114793861|pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQRVXDVAAAPGSKTTQISARXNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEXFDAIL 192
>gi|260598310|ref|YP_003210881.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter
turicensis z3032]
gi|260217487|emb|CBA31639.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
turicensis z3032]
Length = 480
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK + G L P+ W G I +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVEAFLAQVAPYGWQLTPV-PWCPEGFWIEREDEDALPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA LM+N G + AN+
Sbjct: 91 AEHLSGQFYIQEASSMLPVAALFADNNAPARVMDVAAAPGSKTTQIAALMQNQGFILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 YSASRVKVLHANISRCGIRNVGLTHFDGRVFGAALPEQFDAIL 193
>gi|157145396|ref|YP_001452715.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter koseri
ATCC BAA-895]
gi|167012766|sp|A8AFL6.1|RSMF_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|157082601|gb|ABV12279.1| hypothetical protein CKO_01138 [Citrobacter koseri ATCC BAA-895]
Length = 479
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D G +L P+ W + G I ++P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVTDFLALTAPYGWSLTPV-PWCEEGFWIERDDEESLP 85
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVL 99
+G+T E+L G + +Q AS A P R +A AA M N G +
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERIMDVAAAPGSKTTQIAARMNNQGAI 145
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPETFDAIL 192
>gi|290508835|ref|ZP_06548206.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
1_1_55]
gi|289778229|gb|EFD86226.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
1_1_55]
Length = 477
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W + G I + +P+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADNPQPERVMDVAAAPGSKTTQIAARMGNAGGILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEAFDAIL 192
>gi|206579412|ref|YP_002237778.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
342]
gi|226725340|sp|B5XQ35.1|RSMF_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|206568470|gb|ACI10246.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae 342]
Length = 477
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W + G I + +P+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADNPQPERVMDVAAAPGSKTTQIAARMGNAGGILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEAFDAIL 192
>gi|117920217|ref|YP_869409.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. ANA-3]
gi|117612549|gb|ABK48003.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. ANA-3]
Length = 510
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLKT D + + +G +PI W + G I Y+ +G E++ G
Sbjct: 59 RPLRRSIRVNTLKTSSEDFKRLMQPKGWTFEPI-PWCEDGFWISYDEEEQLGNALEHIQG 117
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 118 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 177
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 178 KVLHANVLRMGASHCALTHFDGRVFGE 204
>gi|254286435|ref|ZP_04961393.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226]
gi|150423602|gb|EDN15545.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226]
Length = 503
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 62 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 120
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 121 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 181 SRVKVLHANIQRCGIRNTALSNFDGCVFGGWLPERFDAVL 220
>gi|429885734|ref|ZP_19367312.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
PS15]
gi|429227427|gb|EKY33455.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
PS15]
Length = 473
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|257096808|sp|A7MKH5.2|RSMF_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 480
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK + G L P+ W G I +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVDAFLAQVAPYGWQLTPV-PWCPEGFWIERDDEDALPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA LM+N G + AN+
Sbjct: 91 AEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 YSASRVKVLHANISRCGIHNVGLTHFDGRVFGAALPEQFDAIL 193
>gi|288934704|ref|YP_003438763.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22]
gi|288889413|gb|ADC57731.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22]
Length = 477
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W + G I + +P+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADNPQPERVMDVAAAPGSKTTQIAARMGNAGGILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPETFDAIL 192
>gi|417820902|ref|ZP_12467516.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE39]
gi|340038533|gb|EGQ99507.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE39]
Length = 459
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|334704971|ref|ZP_08520837.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas caviae
Ae398]
Length = 488
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATP 62
+ ++PL +IR NTLK + + G LDP+ W + G + S +VP+G T
Sbjct: 42 ASCRQPLRRSIRVNTLKITVSEFVARMAPLGWQLDPV-PWCETGFWLTRSDESVPLGNTA 100
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM+N G+L AN
Sbjct: 101 EHLCGLFYIQEASSMLPVTALFASEQTRGDGMLLDAAAAPGSKTTQIAALMENRGMLIAN 160
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 161 EFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 204
>gi|423953606|ref|ZP_17734614.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-40]
gi|423983053|ref|ZP_17738165.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-46]
gi|408659436|gb|EKL30486.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-40]
gi|408664984|gb|EKL35805.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HE-46]
Length = 473
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|300816275|ref|ZP_07096497.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
107-1]
gi|415873628|ref|ZP_11540848.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli MS 79-10]
gi|432805883|ref|ZP_20039821.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE91]
gi|432934477|ref|ZP_20133986.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE184]
gi|433193803|ref|ZP_20377802.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE90]
gi|300530965|gb|EFK52027.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
107-1]
gi|342930835|gb|EGU99557.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Escherichia coli MS 79-10]
gi|431355004|gb|ELG41718.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE91]
gi|431453458|gb|ELH33865.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE184]
gi|431717105|gb|ELJ81207.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
KTE90]
Length = 481
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGV 98
P+G+T E+L G + +Q AS AP AA M N G
Sbjct: 87 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAAQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 147 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 194
>gi|254226556|ref|ZP_04920138.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51]
gi|125620892|gb|EAZ49244.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51]
Length = 503
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 62 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 120
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 121 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 181 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 220
>gi|398799374|ref|ZP_10558665.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. GM01]
gi|398098790|gb|EJL89070.1| NOL1/NOP2/sun family putative RNA methylase [Pantoea sp. GM01]
Length = 474
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL ++R NTLK D + G L PI W G I + ++P+G+ E+
Sbjct: 32 SQQPLRRSLRVNTLKISVDDFLVRTADYGWRLSPI-PWCAEGFWIERDDESLPLGSVAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AALM+N G + AN+ S
Sbjct: 91 LSGLFYIQEASSMLPVTALFDAAPDARQVMDVAAAPGSKTTQMAALMRNEGAILANEYSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE +A++
Sbjct: 151 SRVKVLHANISRCGVSNVALTHFDGRVFGAALPERFDAIL 190
>gi|417824795|ref|ZP_12471383.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE48]
gi|340046280|gb|EGR07210.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE48]
Length = 473
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|283785573|ref|YP_003365438.1| hypothetical protein ROD_18751 [Citrobacter rodentium ICC168]
gi|282949027|emb|CBG88630.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 479
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D + G +L P+ W G I T+P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLALTASYGWSLTPV-PWCAEGFWIAREDEETLP 85
Query: 58 IGATPEYLGGHYILQGASKYWIC--------APHRAAKLA----------AALMKNTGVL 99
+G+T E+L G + +Q AS AP R +A AA M N G +
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMGNRGAI 145
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 LANEYSASRVKVLHANISRCGIGNVALTHFDGRVFGAALPEMFDAIL 192
>gi|424659294|ref|ZP_18096544.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-16]
gi|408052702|gb|EKG87729.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-16]
Length = 459
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|419837289|ref|ZP_14360727.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46B1]
gi|421354226|ref|ZP_15804558.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-45]
gi|423735235|ref|ZP_17708434.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-41B1]
gi|395953351|gb|EJH63964.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-45]
gi|408630078|gb|EKL02718.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-41B1]
gi|408855837|gb|EKL95532.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46B1]
Length = 473
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|229523586|ref|ZP_04412991.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
bv. albensis VL426]
gi|229337167|gb|EEO02184.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
bv. albensis VL426]
Length = 459
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|153214766|ref|ZP_01949595.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587]
gi|124115108|gb|EAY33928.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587]
Length = 503
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 62 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 120
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 121 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 181 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 220
>gi|229508549|ref|ZP_04398052.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX
330286]
gi|229511380|ref|ZP_04400859.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
B33]
gi|229518519|ref|ZP_04407962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC9]
gi|229607954|ref|YP_002878602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
MJ-1236]
gi|255745056|ref|ZP_05419006.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera
CIRS 101]
gi|262161657|ref|ZP_06030675.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
INDRE 91/1]
gi|262169535|ref|ZP_06037226.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC27]
gi|417813563|ref|ZP_12460216.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-49A2]
gi|417817301|ref|ZP_12463930.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HCUF01]
gi|418334527|ref|ZP_12943448.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-06A1]
gi|418349834|ref|ZP_12954565.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43A1]
gi|418356151|ref|ZP_12958870.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-61A1]
gi|419826499|ref|ZP_14349999.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1033(6)]
gi|421321295|ref|ZP_15771848.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1038(11)]
gi|421328752|ref|ZP_15779262.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1042(15)]
gi|421336244|ref|ZP_15786706.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1048(21)]
gi|421339237|ref|ZP_15789672.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-20A2]
gi|421347635|ref|ZP_15798013.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46A1]
gi|423160227|ref|ZP_17147171.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-33A2]
gi|423165029|ref|ZP_17151775.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48B2]
gi|423893893|ref|ZP_17726707.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-62A1]
gi|424027158|ref|ZP_17766764.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-69A1]
gi|424601723|ref|ZP_18040869.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1047(20)]
gi|424613312|ref|ZP_18052104.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-41A1]
gi|424656630|ref|ZP_18093919.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A2]
gi|443531463|ref|ZP_21097477.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-7A1]
gi|443535251|ref|ZP_21101133.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-80A1]
gi|229343208|gb|EEO08183.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC9]
gi|229351345|gb|EEO16286.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
B33]
gi|229354503|gb|EEO19426.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX
330286]
gi|229370609|gb|ACQ61032.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
MJ-1236]
gi|255737527|gb|EET92922.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera
CIRS 101]
gi|262021769|gb|EEY40479.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
RC27]
gi|262028389|gb|EEY47044.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
INDRE 91/1]
gi|340036049|gb|EGQ97025.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-49A2]
gi|340037024|gb|EGQ97999.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HCUF01]
gi|356418562|gb|EHH72157.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-06A1]
gi|356444330|gb|EHH97139.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43A1]
gi|356447786|gb|EHI00573.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-33A2]
gi|356452649|gb|EHI05328.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-61A1]
gi|356452973|gb|EHI05638.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48B2]
gi|395918289|gb|EJH29113.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1038(11)]
gi|395927286|gb|EJH38049.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1042(15)]
gi|395933255|gb|EJH43995.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1048(21)]
gi|395944185|gb|EJH54859.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-20A2]
gi|395944632|gb|EJH55305.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-46A1]
gi|395976876|gb|EJH86315.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1047(20)]
gi|408014008|gb|EKG51694.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-41A1]
gi|408054673|gb|EKG89637.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A2]
gi|408608331|gb|EKK81729.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1033(6)]
gi|408655864|gb|EKL26971.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-62A1]
gi|408879579|gb|EKM18551.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-69A1]
gi|443456853|gb|ELT24250.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-7A1]
gi|443461563|gb|ELT32632.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-80A1]
Length = 459
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|289192431|ref|YP_003458372.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp.
FS406-22]
gi|288938881|gb|ADC69636.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp.
FS406-22]
Length = 266
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L + L N+GV L+ + + + IG+TPEYL G+Y+ Q
Sbjct: 4 IRVNTLKINPEILKERLENKGVVLE--KTFLDYAFEVKEAPFSIGSTPEYLFGYYMPQSI 61
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LMKN G + A ++S+ R KA+ N +R
Sbjct: 62 SSMIPPVVLNPEENSFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISRSRVKALKSNINR 121
Query: 119 LGVINSVVTCLDGRQY 134
+GV+N+++ D R+Y
Sbjct: 122 MGVLNTIIINADMRKY 137
>gi|421351249|ref|ZP_15801614.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-25]
gi|395951694|gb|EJH62308.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-25]
Length = 473
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQIAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|419830043|ref|ZP_14353528.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-1A2]
gi|419833677|ref|ZP_14357135.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-61A2]
gi|421344475|ref|ZP_15794878.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43B1]
gi|422917426|ref|ZP_16951746.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02A1]
gi|423821711|ref|ZP_17716349.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-55C2]
gi|423854839|ref|ZP_17720145.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-59A1]
gi|423882011|ref|ZP_17723743.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-60A1]
gi|423997857|ref|ZP_17741111.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02C1]
gi|424009579|ref|ZP_17752517.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-44C1]
gi|424016751|ref|ZP_17756583.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55B2]
gi|424019678|ref|ZP_17759466.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-59B1]
gi|424625029|ref|ZP_18063496.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-50A1]
gi|424629521|ref|ZP_18067812.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-51A1]
gi|424636645|ref|ZP_18074655.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55A1]
gi|424640559|ref|ZP_18078444.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A1]
gi|424648626|ref|ZP_18086291.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A1]
gi|443527546|ref|ZP_21093601.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-78A1]
gi|341637686|gb|EGS62362.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02A1]
gi|395940555|gb|EJH51236.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-43B1]
gi|408013515|gb|EKG51231.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-50A1]
gi|408024173|gb|EKG61299.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A1]
gi|408024887|gb|EKG61970.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55A1]
gi|408033720|gb|EKG70247.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A1]
gi|408056255|gb|EKG91146.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-51A1]
gi|408619816|gb|EKK92828.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-1A2]
gi|408635192|gb|EKL07410.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-55C2]
gi|408641665|gb|EKL13436.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-60A1]
gi|408641851|gb|EKL13615.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-59A1]
gi|408649938|gb|EKL21241.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-61A2]
gi|408853051|gb|EKL92864.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-02C1]
gi|408860384|gb|EKM00021.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-55B2]
gi|408864075|gb|EKM03537.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-44C1]
gi|408867746|gb|EKM07100.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-59B1]
gi|443454040|gb|ELT17852.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-78A1]
Length = 459
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|257096810|sp|A9MNH4.2|RSMF_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 479
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E + QRPL +IR NTLK D G L PI W G I
Sbjct: 24 LSFDEFIAACQRPLRRSIRINTLKISVADFLALTAPYGWLLTPI-PWCDEGFWIERDDED 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNH 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKILHANLCRCGVANTALTHFDGRVFGAALPEMFDAIL 192
>gi|379741356|ref|YP_005333325.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
IEC224]
gi|418338156|ref|ZP_12947050.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-23A1]
gi|418346067|ref|ZP_12950834.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-28A1]
gi|421317655|ref|ZP_15768224.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1032(5)]
gi|421325085|ref|ZP_15775610.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1041(14)]
gi|421332637|ref|ZP_15783115.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1046(19)]
gi|422891709|ref|ZP_16934076.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-40A1]
gi|422902815|ref|ZP_16937801.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48A1]
gi|422906696|ref|ZP_16941513.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-70A1]
gi|422913552|ref|ZP_16948063.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HFU-02]
gi|422925756|ref|ZP_16958775.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-38A1]
gi|423145078|ref|ZP_17132676.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-19A1]
gi|423149754|ref|ZP_17137072.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-21A1]
gi|423153570|ref|ZP_17140760.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-22A1]
gi|423156657|ref|ZP_17143754.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-32A1]
gi|423731064|ref|ZP_17704371.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-17A1]
gi|423758236|ref|ZP_17712426.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-50A2]
gi|423929447|ref|ZP_17731102.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-77A1]
gi|424002509|ref|ZP_17745587.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-17A2]
gi|424006298|ref|ZP_17749271.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-37A1]
gi|424024275|ref|ZP_17763929.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-62B1]
gi|424586432|ref|ZP_18026013.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1030(3)]
gi|424595076|ref|ZP_18034401.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1040(13)]
gi|424598998|ref|ZP_18038181.1| ribosomal RNA small subunit methyltransferase F [Vibrio Cholerae
CP1044(17)]
gi|424606677|ref|ZP_18045625.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1050(23)]
gi|424610505|ref|ZP_18049348.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-39A1]
gi|424617298|ref|ZP_18055974.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-42A1]
gi|424622075|ref|ZP_18060587.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-47A1]
gi|424645043|ref|ZP_18082783.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A2]
gi|424652808|ref|ZP_18090193.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A2]
gi|440709746|ref|ZP_20890398.1| yebU protein [Vibrio cholerae 4260B]
gi|443503876|ref|ZP_21070838.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-64A1]
gi|443507771|ref|ZP_21074540.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-65A1]
gi|443511616|ref|ZP_21078258.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-67A1]
gi|443515169|ref|ZP_21081686.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-68A1]
gi|443518962|ref|ZP_21085364.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-71A1]
gi|443523856|ref|ZP_21090073.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-72A2]
gi|443538807|ref|ZP_21104661.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A1]
gi|449056045|ref|ZP_21734713.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae O1
str. Inaba G4222]
gi|146325709|sp|Q9KRY1.2|RSMF_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096823|sp|C3LMI5.2|RSMF_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|341622575|gb|EGS48228.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-48A1]
gi|341622743|gb|EGS48356.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-70A1]
gi|341623213|gb|EGS48777.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-40A1]
gi|341638000|gb|EGS62656.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HFU-02]
gi|341646998|gb|EGS71096.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-38A1]
gi|356418868|gb|EHH72440.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-21A1]
gi|356423749|gb|EHH77179.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-19A1]
gi|356429585|gb|EHH82800.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-22A1]
gi|356429798|gb|EHH83007.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-23A1]
gi|356434675|gb|EHH87850.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-28A1]
gi|356440572|gb|EHH93512.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-32A1]
gi|378794866|gb|AFC58337.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
IEC224]
gi|395918073|gb|EJH28899.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1032(5)]
gi|395918146|gb|EJH28971.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1041(14)]
gi|395929244|gb|EJH39994.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1046(19)]
gi|395959741|gb|EJH70157.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-56A2]
gi|395960393|gb|EJH70762.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-57A2]
gi|395963451|gb|EJH73717.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-42A1]
gi|395971542|gb|EJH81201.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-47A1]
gi|395974613|gb|EJH84135.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1030(3)]
gi|408007772|gb|EKG45815.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-39A1]
gi|408033409|gb|EKG69959.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1040(13)]
gi|408042851|gb|EKG78883.1| ribosomal RNA small subunit methyltransferase F [Vibrio Cholerae
CP1044(17)]
gi|408043904|gb|EKG79864.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1050(23)]
gi|408624907|gb|EKK97840.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-17A1]
gi|408637088|gb|EKL09180.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-50A2]
gi|408654919|gb|EKL26045.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
HC-77A1]
gi|408846392|gb|EKL86498.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-37A1]
gi|408846641|gb|EKL86734.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-17A2]
gi|408871116|gb|EKM10374.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-62B1]
gi|439974622|gb|ELP50785.1| yebU protein [Vibrio cholerae 4260B]
gi|443431664|gb|ELS74212.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-64A1]
gi|443435590|gb|ELS81728.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-65A1]
gi|443439331|gb|ELS89042.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-67A1]
gi|443443520|gb|ELS96816.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-68A1]
gi|443447376|gb|ELT04026.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-71A1]
gi|443450122|gb|ELT10409.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-72A2]
gi|443464907|gb|ELT39567.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HC-81A1]
gi|448265084|gb|EMB02321.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae O1
str. Inaba G4222]
Length = 473
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|424591199|ref|ZP_18030631.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1037(10)]
gi|408032670|gb|EKG69250.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
CP1037(10)]
Length = 473
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|153824817|ref|ZP_01977484.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2]
gi|153830903|ref|ZP_01983570.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39]
gi|148873618|gb|EDL71753.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39]
gi|149741535|gb|EDM55565.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2]
Length = 503
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 62 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 120
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 121 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 181 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 220
>gi|422307387|ref|ZP_16394546.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1035(8)]
gi|408620806|gb|EKK93811.1| NOL1/NOP2/sun family RNA methylase domain protein [Vibrio cholerae
CP1035(8)]
Length = 459
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|229520538|ref|ZP_04409962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM
11079-80]
gi|229342362|gb|EEO07356.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM
11079-80]
Length = 492
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 51 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 109
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 110 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 169
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 170 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 209
>gi|156933592|ref|YP_001437508.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
ATCC BAA-894]
gi|156531846|gb|ABU76672.1| hypothetical protein ESA_01414 [Cronobacter sakazakii ATCC BAA-894]
Length = 464
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK + G L P+ W G I +P+G+T E+
Sbjct: 19 QRPLRRSIRVNTLKISVDAFLAQVAPYGWQLTPV-PWCPEGFWIERDDEDALPLGSTAEH 77
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSK 106
L G + +Q AS A P R +AAA LM+N G + AN+ S
Sbjct: 78 LSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANEYSA 137
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 138 SRVKVLHANISRCGIHNVGLTHFDGRVFGAALPEQFDAIL 177
>gi|422910580|ref|ZP_16945215.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-09]
gi|341633218|gb|EGS58044.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HE-09]
Length = 459
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|365849910|ref|ZP_09390378.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Yokenella
regensburgei ATCC 43003]
gi|364568235|gb|EHM45880.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Yokenella
regensburgei ATCC 43003]
Length = 478
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D + G L P+ W G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKITVADFLALVAPYGWQLTPV-PWCAEGFWIEREDEDALP 85
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVL 99
+G+T E+L G + +Q AS A P R +A AA M N G +
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNQPQRVMDVAAAPGSKTTQIAARMDNEGAI 145
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 LANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEAFDAIL 192
>gi|384424579|ref|YP_005633937.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
LMA3984-4]
gi|327484132|gb|AEA78539.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
LMA3984-4]
Length = 473
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMGNAHYDTVLDMAAAPGSKTTQIAALMDNQGVLVANEFSA 150
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 151 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 190
>gi|360035396|ref|YP_004937159.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1
str. 2010EL-1786]
gi|356646550|gb|AET26605.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1
str. 2010EL-1786]
Length = 492
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 51 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 109
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 110 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 169
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 170 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 209
>gi|429100951|ref|ZP_19162925.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
turicensis 564]
gi|426287600|emb|CCJ89038.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
turicensis 564]
Length = 480
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK + G L P+ W G I +P+G+T
Sbjct: 32 AACQRPLRRSIRVNTLKISVEAFLAQVAPYGWRLTPV-PWCPEGFWIEREDEDVLPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA LM+N G + AN+
Sbjct: 91 AEHLSGQFYIQEASSMLPVAALFADNNAPARVMDVAAAPGSKTTQIAALMQNQGFILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 151 YSASRVKVLHANISRCGIRNVGLTHFDGRVFGAALPEQFDAIL 193
>gi|15641511|ref|NP_231143.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121587235|ref|ZP_01677009.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80]
gi|121726919|ref|ZP_01680120.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52]
gi|147674343|ref|YP_001217056.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O395]
gi|153822818|ref|ZP_01975485.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33]
gi|227081661|ref|YP_002810212.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
M66-2]
gi|227117967|ref|YP_002819863.1| Sun/nucleolar protein family protein [Vibrio cholerae O395]
gi|254848624|ref|ZP_05237974.1| sun/nucleolar protein family protein [Vibrio cholerae MO10]
gi|298498410|ref|ZP_07008217.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK
757]
gi|9656005|gb|AAF94657.1| Sun/nucleolar protein family protein [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548578|gb|EAX58632.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80]
gi|121630681|gb|EAX63068.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52]
gi|126519677|gb|EAZ76900.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33]
gi|146316226|gb|ABQ20765.1| NOL1/NOP2/sun family protein [Vibrio cholerae O395]
gi|227009549|gb|ACP05761.1| Sun/nucleolar protein family protein [Vibrio cholerae M66-2]
gi|227013417|gb|ACP09627.1| Sun/nucleolar protein family protein [Vibrio cholerae O395]
gi|254844329|gb|EET22743.1| sun/nucleolar protein family protein [Vibrio cholerae MO10]
gi|297542743|gb|EFH78793.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK
757]
Length = 503
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 62 CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 120
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 121 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 181 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 220
>gi|395229794|ref|ZP_10408105.1| ribosomal RNA small subunit methyltransferase F [Citrobacter sp.
A1]
gi|424729900|ref|ZP_18158500.1| hypothetical protein B397_1481 [Citrobacter sp. L17]
gi|394717009|gb|EJF22739.1| ribosomal RNA small subunit methyltransferase F [Citrobacter sp.
A1]
gi|422895855|gb|EKU35642.1| hypothetical protein B397_1481 [Citrobacter sp. L17]
Length = 473
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D +L P+ W G I + +VP
Sbjct: 25 FLAA--CQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDEDESVP 81
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 82 LGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAI 141
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 142 LANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALPESFDAIL 188
>gi|375131011|ref|YP_004993111.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
NCTC 11218]
gi|315180185|gb|ADT87099.1| Ribosomal RNA small subunit methyltransferase F (rRNA
(cytosine-C(5)-)-methyltransferase rsmF) (16S rRNA
m5C1407 methyltransferase) [Vibrio furnissii NCTC 11218]
Length = 474
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK +G L+ + W G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKVSVEAFLSRAKEKGWMLEAV-PWCDTGFWIDADESDVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
+ G + +Q AS AP AALM N G+L AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMDASERFDAVLDMAAAPGSKTTQIAALMNNAGILVANEFS 150
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DGR +G PE+ +AV+
Sbjct: 151 ASRVKVLHANIERCGIRNTALSNFDGRVFGGWLPEQFDAVL 191
>gi|261252942|ref|ZP_05945515.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417953608|ref|ZP_12596652.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260936333|gb|EEX92322.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342816964|gb|EGU51854.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 474
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
QRPL +IR NTLK ++G L+P+ W + G I S VP+G T E++
Sbjct: 33 QRPLRKSIRVNTLKISIDAFLTRAKSKGWQLEPV-PWCEEGFWIEADESQVPLGNTAEHM 91
Query: 66 GGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
G + +Q AS AP AA M+N GVL AN+ S
Sbjct: 92 SGLFYIQEASSMMPVAALFDNQGDDFTSVLDMAAAPGSKTTQIAAKMENAGVLVANEFSA 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE+ AV+
Sbjct: 152 SRVKVLHANIERCGVRNTALSNYDGRVFGGWLPEQFNAVL 191
>gi|242398230|ref|YP_002993654.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
sibiricus MM 739]
gi|242264623|gb|ACS89305.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
sibiricus MM 739]
Length = 310
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTL+T + + + +G I W++ G + I +TPEY
Sbjct: 31 EAMERPLPRCFRVNTLRTEISTITKIMNKKGFQFKRIS-WAREGFCLTREPFSITSTPEY 89
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
LGG +Q AS + AP A LMKN GV++A DV ++R
Sbjct: 90 LGGLIYIQEASSMYPPVALEPKPGEIIADMAAAPGGKTSYMAQLMKNKGVIYAFDVGRDR 149
Query: 109 SKAIVGNFHRLGVINSVV 126
K N RLGV N+++
Sbjct: 150 LKETRLNLSRLGVTNTIL 167
>gi|411009315|ref|ZP_11385644.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas aquariorum
AAK1]
Length = 476
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ +RPL +IR NTLK + G LDP+ W G + + +VP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLGNTA 88
Query: 63 EYLGGHYILQGASKY------WIC--------------APHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS + C AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMDNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|161503027|ref|YP_001570139.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160864374|gb|ABX20997.1| hypothetical protein SARI_01091 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 513
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E + QRPL +IR NTLK D G L PI W G I
Sbjct: 58 LSFDEFIAACQRPLRRSIRINTLKISVADFLALTAPYGWLLTPI-PWCDEGFWIERDDED 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNH 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 177 GAILANEFSASRVKILHANLCRCGVANTALTHFDGRVFGAALPEMFDAIL 226
>gi|375084080|ref|ZP_09731090.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
litoralis DSM 5473]
gi|374741246|gb|EHR77674.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
litoralis DSM 5473]
Length = 310
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTL+ L + L +G + W+K G + I +TPEY
Sbjct: 31 EAMEKPLPRCFRVNTLRIEIPRLTKMLNKKGFQFKRV-PWAKEGFCLTREPFSITSTPEY 89
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
LGG +Q AS + AP A LMKN G+++A DV +ER
Sbjct: 90 LGGLLYIQEASSMYPPIALDPKPGEVVADMAAAPGGKTSYLAQLMKNEGIIYAFDVGEER 149
Query: 109 SKAIVGNFHRLGVINSVV 126
K N RLGV N+++
Sbjct: 150 LKETRLNLSRLGVTNTIL 167
>gi|260768468|ref|ZP_05877402.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
CIP 102972]
gi|260616498|gb|EEX41683.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
CIP 102972]
Length = 474
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK +G L+ + W G I S VP+G T E+
Sbjct: 32 CQRPLRKSIRVNTLKISVEAFLSRAKEKGWMLEAV-PWCDTGFWIDADESDVPLGNTAEH 90
Query: 65 LGGHYILQGASKYW-------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
+ G + +Q AS AP AALM N G+L AN+ S
Sbjct: 91 MAGLFYIQEASSMMPVSALFMDASERFDAVLDMAAAPGSKTTQIAALMNNAGILVANEFS 150
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DGR +G PE+ +AV+
Sbjct: 151 ASRVKVLHANIERCGIRNTALSNFDGRVFGGWLPEQFDAVL 191
>gi|421497807|ref|ZP_15944955.1| rRNA -methyltransferase RsmF [Aeromonas media WS]
gi|407183130|gb|EKE57039.1| rRNA -methyltransferase RsmF [Aeromonas media WS]
Length = 458
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATP 62
+ ++PL +IR NTLK + + G LDP+ W G + S +VP+G T
Sbjct: 12 ASCRQPLRRSIRVNTLKITVSEFVARMAPLGWQLDPV-PWCAAGFWLTRSDESVPLGNTA 70
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM+N G+L AN
Sbjct: 71 EHLCGLFYIQEASSMLPVMALFASEQTRGDGMLLDAAAAPGSKTTQIAALMENRGMLIAN 130
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 131 EFSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 174
>gi|24374151|ref|NP_718194.1| 16S rRNA (cytosine1407-C5)-methyltransferase RsmF [Shewanella
oneidensis MR-1]
gi|81461270|sp|Q8EDY2.1|RSMF_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|24348654|gb|AAN55638.1| 16S rRNA (cytosine1407-C5)-methyltransferase RsmF [Shewanella
oneidensis MR-1]
Length = 474
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D + + +G +PI W K G I Y+ +G E++ G
Sbjct: 31 RPLRRSIRVNTLKISSEDFKRLMQPKGWTFEPI-PWCKDGFWISYDEEEQLGNALEHIQG 89
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 90 LFYIQEASSMLPPTALFTPNADWQCVLDLAAAPGSKTTQMAALMNNQGLLVANEYSASRV 149
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 150 KVLHANVLRMGASHCALTHFDGRVFGE 176
>gi|153801173|ref|ZP_01955759.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3]
gi|124123293|gb|EAY42036.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3]
Length = 503
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 62 CQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 120
Query: 65 LGGHYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS + C AP AALM N GVL AN+ S
Sbjct: 121 MAGLFYIQEASSMIPVSALFMGDAEYDCVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 181 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 220
>gi|423196649|ref|ZP_17183232.1| ribosomal RNA small subunit methyltransferase F [Aeromonas
hydrophila SSU]
gi|404632103|gb|EKB28732.1| ribosomal RNA small subunit methyltransferase F [Aeromonas
hydrophila SSU]
Length = 487
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ +RPL +IR NTLK + G LDP+ W G + + +VP+G T
Sbjct: 42 ASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLGNTA 100
Query: 63 EYLGGHYILQGASKY------WIC--------------APHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS + C AP AALM N G+L AN
Sbjct: 101 EHLSGLFYIQEASSMLPVTALFACEKIRRDGMLLDAAAAPGSKTTQIAALMDNQGMLVAN 160
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 161 EYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 204
>gi|146325689|sp|A0KKI5.2|RSMF_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 475
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ +RPL +IR NTLK + G LDP+ W G + + +VP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLGNTA 88
Query: 63 EYLGGHYILQGASKY------WIC--------------APHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS + C AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|117621518|ref|YP_856786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117562925|gb|ABK39873.1| Sun/nucleolar protein family protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 536
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ +RPL +IR NTLK + G LDP+ W G + + +VP+G T
Sbjct: 91 ASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLGNTA 149
Query: 63 EYLGGHYILQGASKY------WIC--------------APHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS + C AP AALM N G+L AN
Sbjct: 150 EHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 209
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 210 EYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 253
>gi|229529456|ref|ZP_04418846.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
12129(1)]
gi|229333230|gb|EEN98716.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
12129(1)]
Length = 459
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL +IR NTLK + +Q + L P+ W G I S VP+G T E+
Sbjct: 18 CQRPLRKSIRVNTLKISVAEFSQRAAEKEWQLTPV-PWCDNGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDTVLDMAAAPGSKTTQIAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|417707470|ref|ZP_12356515.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri VA-6]
gi|420330958|ref|ZP_14832634.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-1770]
gi|333003634|gb|EGK23170.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri VA-6]
gi|391254833|gb|EIQ13991.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-1770]
Length = 479
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T GR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFGGRVFGASVPEMFDAIL 192
>gi|417712308|ref|ZP_12361297.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-272]
gi|417716994|ref|ZP_12365912.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-227]
gi|417827620|ref|ZP_12474186.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
J1713]
gi|420320069|ref|ZP_14821907.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2850-71]
gi|333006730|gb|EGK26227.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-272]
gi|333018648|gb|EGK37941.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-227]
gi|335575906|gb|EGM62173.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
J1713]
gi|391251109|gb|EIQ10325.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2850-71]
Length = 479
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T GR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFGGRVFGAAVPEMFDAIL 192
>gi|377576171|ref|ZP_09805155.1| ribosomal RNA small subunit methyltransferase F [Escherichia
hermannii NBRC 105704]
gi|377542203|dbj|GAB50320.1| ribosomal RNA small subunit methyltransferase F [Escherichia
hermannii NBRC 105704]
Length = 478
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVP 57
SF++A QRPL +IR NTLK D + L PI W + G I + P
Sbjct: 29 SFIDA--CQRPLRRSIRVNTLKISVSDFLALVEPYAWQLSPI-PWCEEGFWIERDDEDFP 85
Query: 58 IGATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVL 99
+G++ E+L G + +Q AS AP AA MKN G +
Sbjct: 86 LGSSAEHLSGLFYIQEASSMLPVAALFADNPSFARVMDVAAAPGSKTTQIAARMKNQGAI 145
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ + R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 LANEYAASRVKVLAANISRCGISNVALTHFDGRVFGAALPEAFDAIL 192
>gi|238895411|ref|YP_002920146.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|330001320|ref|ZP_08303939.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS
92-3]
gi|378979526|ref|YP_005227667.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386035488|ref|YP_005955401.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
KCTC 2242]
gi|402780138|ref|YP_006635684.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|419763679|ref|ZP_14289922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|419973891|ref|ZP_14489313.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419979283|ref|ZP_14494575.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419985187|ref|ZP_14500329.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419990513|ref|ZP_14505484.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419997893|ref|ZP_14512686.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420002726|ref|ZP_14517376.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420009310|ref|ZP_14523794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420014847|ref|ZP_14529151.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420020016|ref|ZP_14534206.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420025700|ref|ZP_14539707.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420030420|ref|ZP_14544246.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420036418|ref|ZP_14550078.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420043047|ref|ZP_14556537.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420048957|ref|ZP_14562268.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420053840|ref|ZP_14567016.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420059350|ref|ZP_14572358.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420065937|ref|ZP_14578740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420073547|ref|ZP_14586171.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420076479|ref|ZP_14588950.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420082046|ref|ZP_14594348.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|421910062|ref|ZP_16339855.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421919025|ref|ZP_16348535.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424831280|ref|ZP_18256008.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932783|ref|ZP_18351155.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|428148288|ref|ZP_18996174.1| Ribosomal RNA small subunit methyltransferase F ## SSU rRNA m5C1407
[Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428931367|ref|ZP_19004964.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
JHCK1]
gi|428937898|ref|ZP_19011032.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
VA360]
gi|449058568|ref|ZP_21736687.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
hvKP1]
gi|257096809|sp|A6TB06.2|RSMF_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|238547728|dbj|BAH64079.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328537743|gb|EGF63946.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS
92-3]
gi|339762616|gb|AEJ98836.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
KCTC 2242]
gi|364518937|gb|AEW62065.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397347138|gb|EJJ40247.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397349231|gb|EJJ42326.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397352235|gb|EJJ45315.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397361902|gb|EJJ54559.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397366526|gb|EJJ59142.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397370750|gb|EJJ63314.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397377367|gb|EJJ69601.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397381763|gb|EJJ73931.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397388406|gb|EJJ80384.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397396637|gb|EJJ88324.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397401676|gb|EJJ93295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397406740|gb|EJJ98151.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397414369|gb|EJK05569.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397414861|gb|EJK06053.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397423577|gb|EJK14501.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397430744|gb|EJK21432.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397435767|gb|EJK26375.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397437738|gb|EJK28286.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397447185|gb|EJK37385.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397452574|gb|EJK42642.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|397743608|gb|EJK90823.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|402541048|gb|AFQ65197.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|407806970|gb|EKF78221.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|410115957|emb|CCM82480.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410118664|emb|CCM91160.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414708714|emb|CCN30418.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426306592|gb|EKV68692.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
VA360]
gi|426308125|gb|EKV70194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
JHCK1]
gi|427541811|emb|CCM92312.1| Ribosomal RNA small subunit methyltransferase F ## SSU rRNA m5C1407
[Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448875371|gb|EMB10391.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
hvKP1]
Length = 477
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W G I + +P+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPETFDAIL 192
>gi|262041948|ref|ZP_06015131.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040754|gb|EEW41842.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 477
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W G I + +P+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPETFDAIL 192
>gi|256811186|ref|YP_003128555.1| RNA methylase [Methanocaldococcus fervens AG86]
gi|256794386|gb|ACV25055.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus fervens
AG86]
Length = 265
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L + L ++GV L + + S IG+TPEYL G+Y+ Q
Sbjct: 4 IRVNTLKINPDVLKKRLEDKGVVLKE--TFLDYAFEVIKSPFSIGSTPEYLFGYYMPQSI 61
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LMKN G + A ++SK R KA+ N +R
Sbjct: 62 SSMIPPIVLNPKEQDFILDMCAAPGGKTTHLAQLMKNNGTIVAVEISKTRVKALKSNINR 121
Query: 119 LGVINSVVTCLDGRQY 134
+GV+N+++ D R+Y
Sbjct: 122 MGVLNTIIINADMRKY 137
>gi|146325703|sp|A1RIZ0.2|RSMF_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|257096820|sp|A4Y7J8.2|RSMF_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 486
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPI 58
F+ A + RPL +IR NTLK D + +G DPI W K G I Y+ +
Sbjct: 24 DFIAACD--RPLRRSIRVNTLKISADDFKTLMQPKGWTFDPI-PWCKDGFWISYDEEEQL 80
Query: 59 GATPEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKN 95
G E++ G + +Q AS W C AP AALM N
Sbjct: 81 GNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQIAALMHN 140
Query: 96 TGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 141 SGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 181
>gi|152970898|ref|YP_001336007.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|365137632|ref|ZP_09344346.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
4_1_44FAA]
gi|425076077|ref|ZP_18479180.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082182|ref|ZP_18485279.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425086710|ref|ZP_18489803.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425092225|ref|ZP_18495310.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|150955747|gb|ABR77777.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|363655943|gb|EHL94730.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
4_1_44FAA]
gi|405593581|gb|EKB67022.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600434|gb|EKB73599.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405603434|gb|EKB76555.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405612200|gb|EKB84958.1| ribosomal RNA small subunit methyltransferase F [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
Length = 462
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W G I + +P+G+T
Sbjct: 16 AACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPLGST 74
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 75 AEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGILANE 134
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 135 FSASRVKVLHANISRCGISNVALTHFDGRVFGAALPETFDAIL 177
>gi|120598615|ref|YP_963189.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp.
W3-18-1]
gi|146293306|ref|YP_001183730.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
putrefaciens CN-32]
gi|386313981|ref|YP_006010146.1| RNA methylase [Shewanella putrefaciens 200]
gi|120558708|gb|ABM24635.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp.
W3-18-1]
gi|145564996|gb|ABP75931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella
putrefaciens CN-32]
gi|319426606|gb|ADV54680.1| RNA methylase, NOL1/NOP2/sun family [Shewanella putrefaciens 200]
Length = 505
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W K G I Y+ +G
Sbjct: 44 FIAACD--RPLRRSIRVNTLKISADDFKTLMQPKGWTFDPI-PWCKDGFWISYDEEEQLG 100
Query: 60 ATPEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNT 96
E++ G + +Q AS W C AP AALM N+
Sbjct: 101 NALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQIAALMHNS 160
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 161 GLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 200
>gi|401675923|ref|ZP_10807910.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp.
SST3]
gi|400216967|gb|EJO47866.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp.
SST3]
Length = 465
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + L P+ W GL I VP+G+T
Sbjct: 16 AACQRPLRRSIRVNTLKISVEDFLALVAPYSWQLTPV-PWCAEGLWIERDDEDAVPLGST 74
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA M N G + AN+
Sbjct: 75 AEHLSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMGNRGAILANE 134
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 135 FSASRVKVLHANISRCGIHNVALTHFDGRVFGAALPEAFDAIL 177
>gi|421847842|ref|ZP_16280973.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter freundii
ATCC 8090 = MTCC 1658]
gi|411770807|gb|EKS54550.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter freundii
ATCC 8090 = MTCC 1658]
Length = 462
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D +L P+ W G I +VP
Sbjct: 14 FLAA--CQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDEEESVP 70
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 71 LGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAI 130
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 131 LANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALPESFDAIL 177
>gi|13435750|gb|AAH04733.1| Nop2 protein [Mus musculus]
Length = 432
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 79 ICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
CAP A LM+NTGV+ AND + +R K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 15 CCAPGGKTSYIAQLMENTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPK 72
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 145 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QARRFHPTLR 187
>gi|237731873|ref|ZP_04562354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2]
gi|226907412|gb|EEH93330.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2]
Length = 473
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E + QRPL +IR NTLK D +L P+ W G I
Sbjct: 20 LSFDEFLAACQRPLRRSIRVNTLKISVADFLALTAPYNWSLTPV-PWCAEGFWIERDDEE 78
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNT 96
+VP+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 79 SVPLGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNR 138
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 139 GAILANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALPESFDAIL 188
>gi|242239507|ref|YP_002987688.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya dadantii
Ech703]
gi|242131564|gb|ACS85866.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech703]
Length = 481
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGAT 61
+ QRPL +IR NTLK D + G L PI W G + N+ + +G
Sbjct: 32 AACQRPLRRSIRVNTLKIGVADFLALVEPYGWRLAPI-PWCDEGFWLLNADEAVLRLGNA 90
Query: 62 PEYLGGHYILQGASK--------YWICAPHRAAKLAAA----------LMKNTGVLFAND 103
E+LGG + +Q AS + P R +AAA M+N G + AN+
Sbjct: 91 LEHLGGLFYIQEASSMLPVNALFHGGITPERVLDMAAAPGSKTTQLAARMRNQGGIVANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N HR GV N+ +T DGR +G+ PE +AV+
Sbjct: 151 YSSSRVKVLHANLHRCGVSNTALTHFDGRIFGEVLPEHFDAVL 193
>gi|297579072|ref|ZP_06941000.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385]
gi|297536666|gb|EFH75499.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385]
Length = 503
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 62 CQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 120
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 121 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 181 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 220
>gi|296109553|ref|YP_003616502.1| RNA methylase, NOL1/NOP2/sun family [methanocaldococcus infernus
ME]
gi|295434367|gb|ADG13538.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus
ME]
Length = 274
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L + L +GV L+ + + S IGATPEYL G+Y+ Q
Sbjct: 15 IRVNTLKISPSALKERLEKKGVKLE--KTFLDYAFRVIESPFSIGATPEYLFGYYMPQSL 72
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LM N G + A ++SKER KA+ N +R
Sbjct: 73 SSMIPPITLNPSPKDRVLDMCAAPGGKTTHLAQLMGNEGTILAVEISKERVKALKSNINR 132
Query: 119 LGVINSVVTCLDGRQY 134
+ ++N+++ D R+Y
Sbjct: 133 MNILNTIIINKDMRKY 148
>gi|455645887|gb|EMF24930.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter freundii
GTC 09479]
Length = 462
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D +L P+ W G I +VP
Sbjct: 14 FLAA--CQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDEEESVP 70
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 71 LGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNRGAI 130
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 131 LANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALPESFDAIL 177
>gi|381404290|ref|ZP_09928974.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea sp. Sc1]
gi|380737489|gb|EIB98552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea sp. Sc1]
Length = 477
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL T+R NTLK D + + L P+ W + G I + ++P+G+ E+
Sbjct: 35 SQQPLRRTLRVNTLKISVADFLRLTADYEWQLTPV-PWCEEGFWISREDESLPLGSVAEH 93
Query: 65 LGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA M N G++ AN+ S
Sbjct: 94 LSGLFYIQEASSMLPVTALFDAQTAVSAVMDMAAAPGSKTTQIAARMGNQGIILANEFSS 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS +T D R +G PE+ +A++
Sbjct: 154 SRVKVLHANITRCGVTNSALTHFDARVFGPALPEQFDAIL 193
>gi|170726339|ref|YP_001760365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella woodyi
ATCC 51908]
gi|254766869|sp|B1KQN1.1|RSMF_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|169811686|gb|ACA86270.1| RNA methylase, NOL1/NOP2/sun family [Shewanella woodyi ATCC 51908]
Length = 478
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGL-VIYNSTVPIGATPE 63
S + +PL +IR NTLK + + +G LDPI W G V ++ + +G T E
Sbjct: 27 SYSSKPLRPSIRINTLKISSDEFVTLMAAKGWTLDPI-PWCSDGFWVALDNEIQLGNTIE 85
Query: 64 YLGGHYILQGAS----------------KYWI----CAPHRAAKLAAALMKNTGVLFAND 103
++ G + +Q AS +Y I AP A+LM N G+L AN+
Sbjct: 86 HIQGLFYIQEASSMLPPTALFDGLDNSSEYTILDMASAPGSKTTQMASLMDNKGLLVANE 145
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K + N R+GV N+ +T D R +G+
Sbjct: 146 YSSSRVKVLHANVQRMGVYNTALTHFDARVFGE 178
>gi|229514909|ref|ZP_04404369.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
TMA 21]
gi|229347614|gb|EEO12573.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
TMA 21]
Length = 459
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|422922786|ref|ZP_16955961.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
BJG-01]
gi|341644866|gb|EGS69030.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
BJG-01]
Length = 459
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK + Q + L P+ W + G I S VP+G T E+
Sbjct: 18 CQRPLRKSLRVNTLKISVAEFCQRAAEKEWQLTPV-PWCENGFWIDADESLVPLGNTAEH 76
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AALM N GVL AN+ S
Sbjct: 77 MAGLFYIQEASSMMPVSALFMRNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ ++ DG +G PE +AV+
Sbjct: 137 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVL 176
>gi|27365942|ref|NP_761470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
CMCP6]
gi|81844637|sp|Q8D9F3.1|RSMF_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325711|sp|Q7MKY6.2|RSMF_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|27362091|gb|AAO10997.1| Ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
CMCP6]
Length = 472
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 25/159 (15%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
Q+PL +IR NTLK +G L P+ W + G I S VP+G T E++
Sbjct: 33 QQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPV-PWCETGFWIEADESKVPLGNTAEHM 91
Query: 66 GGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSKE 107
G + +Q AS AP AALM N G+L AN+ +
Sbjct: 92 CGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAAS 151
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE +AV+
Sbjct: 152 RVKVLHANIERCGVRNAALSNFDGRVFGGWLPESFDAVL 190
>gi|320156455|ref|YP_004188834.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
MO6-24/O]
gi|319931767|gb|ADV86631.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
MO6-24/O]
Length = 472
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 25/159 (15%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
Q+PL +IR NTLK +G L P+ W + G I S VP+G T E++
Sbjct: 33 QQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPV-PWCETGFWIKADESKVPLGNTAEHM 91
Query: 66 GGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSKE 107
G + +Q AS AP AALM N G+L AN+ +
Sbjct: 92 CGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAAS 151
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE +AV+
Sbjct: 152 RVKVLHANIERCGVRNAALSNFDGRVFGGWLPESFDAVL 190
>gi|37679825|ref|NP_934434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
YJ016]
gi|37198570|dbj|BAC94405.1| sun/nucleolar protein family protein [Vibrio vulnificus YJ016]
Length = 501
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 25/159 (15%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYL 65
Q+PL +IR NTLK +G L P+ W + G I S VP+G T E++
Sbjct: 62 QQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPV-PWCETGFWIEADESKVPLGNTAEHM 120
Query: 66 GGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSKE 107
G + +Q AS AP AALM N G+L AN+ +
Sbjct: 121 CGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVANEYAAS 180
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ ++ DGR +G PE +AV+
Sbjct: 181 RVKVLHANIERCGVRNAALSNFDGRVFGGWLPESFDAVL 219
>gi|365107550|ref|ZP_09335877.1| ribosomal RNA small subunit methyltransferase F [Citrobacter
freundii 4_7_47CFAA]
gi|363641249|gb|EHL80649.1| ribosomal RNA small subunit methyltransferase F [Citrobacter
freundii 4_7_47CFAA]
Length = 473
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E + QRPL +IR NTLK D +L P+ W G I
Sbjct: 20 LSFDEFLAACQRPLRRSIRVNTLKISVADFLALTAPYNWSLTPV-PWCAEGFWIERDDEE 78
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNT 96
+VP+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 79 SVPLGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPERVMDVAAAPGSKTTQIAAKMNNR 138
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 139 GAILANEFSASRVKVLHANVSRCGIANVALTHFDGRVFGAALPESFDAIL 188
>gi|354724142|ref|ZP_09038357.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter mori LMG
25706]
Length = 480
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + G L P+ W + G I +P+G+T
Sbjct: 31 AACQRPLRRSIRINTLKNSVADFLTLVSPYGWQLTPV-PWCEEGFWIERDDEDALPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFAEGNAPERVMDVAAAPGSKTTQIAARMGNRGAILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGIHNVALTHFDGRVFGAALPEAFDAIL 192
>gi|423114992|ref|ZP_17102683.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5245]
gi|376383867|gb|EHS96594.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5245]
Length = 491
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI---YNSTVPIGAT 61
+ QRPL ++R NTLK D Q + G L P+ W + G I +P+G+T
Sbjct: 45 AACQRPLRRSLRVNTLKISVADFLQLVAPYGWQLTPV-PWCEEGFWIDREEEDALPLGST 103
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVLFAND 103
E+L G + +Q AS A P+R +AAA M N G + AN+
Sbjct: 104 AEHLSGLFYIQEASSMLPVAALFADGNMPNRVMDVAAAPGSKTTQIAARMGNKGGILANE 163
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 164 YSASRVKVLHANISRCGIGNVALTHFDGRVFGAALPECFDAIL 206
>gi|423109032|ref|ZP_17096727.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5243]
gi|376383226|gb|EHS95954.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5243]
Length = 491
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI---YNSTVPIGAT 61
+ QRPL ++R NTLK D Q + G L P+ W + G I +P+G+T
Sbjct: 45 AACQRPLRRSLRVNTLKISVADFLQLVAPYGWQLTPV-PWCEEGFWIDREEEDALPLGST 103
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVLFAND 103
E+L G + +Q AS A P+R +AAA M N G + AN+
Sbjct: 104 AEHLSGLFYIQEASSMLPVAALFADGNMPNRVMDVAAAPGSKTTQIAARMGNKGGILANE 163
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 164 YSASRVKVLHANISRCGIGNVALTHFDGRVFGAALPECFDAIL 206
>gi|18977629|ref|NP_578986.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
3638]
gi|397651750|ref|YP_006492331.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
gi|18893351|gb|AAL81381.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
gi|393189341|gb|AFN04039.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
Length = 310
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTLK ++ + L+ +G + W++ G + I +TPEY
Sbjct: 31 EAMEKPLPRCFRVNTLKGTISEITKRLMKKGFQFTRV-PWAREGFCLTREPFSITSTPEY 89
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A LM+N G++FA DV +ER
Sbjct: 90 LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYMAQLMENKGLIFAFDVDEER 149
Query: 109 SKAIVGNFHRLGVINSVV 126
K N RLGV+N+++
Sbjct: 150 LKETRLNLSRLGVLNTIL 167
>gi|387889047|ref|YP_006319345.1| IMP dehydrogenase / GMP reductase domain protein [Escherichia
blattae DSM 4481]
gi|414595708|ref|ZP_11445322.1| ribosomal RNA small subunit methyltransferase F [Escherichia
blattae NBRC 105725]
gi|386923880|gb|AFJ46834.1| IMP dehydrogenase / GMP reductase domain protein [Escherichia
blattae DSM 4481]
gi|403193333|dbj|GAB82974.1| ribosomal RNA small subunit methyltransferase F [Escherichia
blattae NBRC 105725]
Length = 482
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 78/170 (45%), Gaps = 30/170 (17%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPI-----GKWSKVGLVIYNS 54
SF+ A QRPL ++R NTLK D Q G L PI G W G NS
Sbjct: 29 SFIAA--CQRPLRRSLRVNTLKISVADFLQLTAPLGWQLTPIPWCAEGFWVTTGDDDENS 86
Query: 55 TVPIGATPEYLGGHYILQGASKYW--------ICAPHRAAKLAAAL----------MKNT 96
+P+G+ E+L G + +Q AS + P R +AAA M N
Sbjct: 87 -LPLGSYAEHLSGLFYIQEASSMLPVTALFDAVPRPERVMDMAAAPGSKTTQIAARMANR 145
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G++ AN+ + R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 146 GMILANEYAASRVKVLHANISRCGISNTALTHFDGRVFGAALPETFDAIL 195
>gi|146325710|sp|Q5E5C7.2|RSMF_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 473
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
+RPL +IR N LK + Q + +L+P+ W G I + TV +G+T E+
Sbjct: 33 KRPLRRSIRVNILKNSVEEFKQRAAEKQWDLEPV-PWCDTGFWITRPESDTVKLGSTAEH 91
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA MKN G L AN+ S
Sbjct: 92 MAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGALVANEFSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE ++++
Sbjct: 152 SRVKVLCSNIQRCGVSNVALTHFDGRVFGGWLPETFDSIL 191
>gi|437352493|ref|ZP_20747725.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|435212709|gb|ELN95675.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
Length = 444
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEYLGGHYI 70
+IR NTLK D + G +L PI W G I +P+G+T E+L G +
Sbjct: 5 SIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPLGSTAEHLSGLFY 63
Query: 71 LQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSKERSKAI 112
+Q AS A P R +AAA M N G + AN+ S R K +
Sbjct: 64 IQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVL 123
Query: 113 VGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N R G+ N+ +T DGR +G PE +A++
Sbjct: 124 HANISRCGIANTALTHFDGRVFGAALPEMFDAIL 157
>gi|172087696|ref|YP_204657.3| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri
ES114]
gi|59479982|gb|AAW85769.1| predicted methyltransferase [Vibrio fischeri ES114]
Length = 455
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
+RPL +IR N LK + Q + +L+P+ W G I + TV +G+T E+
Sbjct: 15 KRPLRRSIRVNILKNSVEEFKQRAAEKQWDLEPV-PWCDTGFWITRPESDTVKLGSTAEH 73
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA MKN G L AN+ S
Sbjct: 74 MAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGALVANEFSS 133
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE ++++
Sbjct: 134 SRVKVLCSNIQRCGVSNVALTHFDGRVFGGWLPETFDSIL 173
>gi|294141339|ref|YP_003557317.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12]
gi|293327808|dbj|BAJ02539.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12]
Length = 478
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 24/151 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYL 65
+ RPL +IR NTLK + + + +G L+ I W G I +S V +G T E+L
Sbjct: 29 SSRPLRASIRVNTLKISSANFIELMQPKGWTLESI-PWCSDGFWISLDSEVQLGNTIEHL 87
Query: 66 GGHYILQGASKY--------------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
G + +Q AS AP AALM N+G+L AN+ S
Sbjct: 88 QGLFYIQEASSMLPPTALFSQLNETANVTILDMASAPGSKTTQLAALMNNSGLLIANEYS 147
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K + N R+GV N+ +T D R +G+
Sbjct: 148 SSRVKVLHANVQRMGVTNTALTHFDARVFGE 178
>gi|150401879|ref|YP_001325645.1| NOL1/NOP2/sun family RNA methylase [Methanococcus aeolicus
Nankai-3]
gi|150014582|gb|ABR57033.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
aeolicus Nankai-3]
Length = 335
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L L ++G+ L+ + + I N+ VP+GATPEYL G+Y LQ
Sbjct: 76 IRVNTLKITPEKLKARLTDKGIELE--DTFLEYLFKIKNTKVPVGATPEYLFGYYYLQSI 133
Query: 75 SKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +C AP LM N G++ AN+V+++R K++ N R
Sbjct: 134 SSVIPSLVLNPSEKDMVLDMCSAPGGKTTHLCQLMNNKGIVVANEVNRKRIKSLKSNIFR 193
Query: 119 LGVINSVV 126
+ + N+++
Sbjct: 194 MNITNTII 201
>gi|145299018|ref|YP_001141859.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida
subsp. salmonicida A449]
gi|418357620|ref|ZP_12960312.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida
subsp. salmonicida 01-B526]
gi|167012765|sp|A4SMI9.1|RSMF_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|142851790|gb|ABO90111.1| Sun/nucleolar protein family protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689209|gb|EHI53755.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida
subsp. salmonicida 01-B526]
Length = 476
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ +RPL +IR NTLK D + G D + W + G + + +VP+G T
Sbjct: 30 ASCRRPLRRSIRVNTLKISVSDFVMQMQPLGWQFDAV-PWCETGFWLTRADESVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFAN 102
E+L G + +Q AS AP AALM N G+L AN
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQGMLVAN 148
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N +T D + +G+ PE +A++
Sbjct: 149 EYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFDAIL 192
>gi|390434825|ref|ZP_10223363.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pantoea agglomerans
IG1]
Length = 477
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL +IR NTLK D L P+ W + G I + ++P+G+ E+
Sbjct: 35 SQQPLRRSIRVNTLKISVADFLSQTAGYDWKLTPV-PWCEEGFWISREDESLPLGSVAEH 93
Query: 65 LGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA M N GV+ AN+ S
Sbjct: 94 LSGLFYIQEASSMLPVTALFDAQPEVSAVMDMAAAPGSKTTQIAARMGNQGVILANEFSS 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS +T D R +G PE+ +A++
Sbjct: 154 SRVKVLHANISRCGVSNSALTHFDARVFGPALPEQFDAIL 193
>gi|449327958|gb|AGE94259.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter
amalonaticus Y19]
Length = 513
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D G +L P+ W + G I +P
Sbjct: 63 FLAA--CQRPLRRSIRVNTLKISVADFLTLTAPYGWSLTPV-PWCEEGFWIERDNEDALP 119
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVL 99
+G+T E+L G + +Q AS A P+R +A AA M N G +
Sbjct: 120 LGSTAEHLSGLFYIQEASSMLPVAALFADDNSPNRVMDVAAAPGSKTTQIAARMGNRGAI 179
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 180 LANEYSASRVKVLHANISRCGINNVALTHFDGRVFGAALPEMFDAIL 226
>gi|432329310|ref|YP_007247454.1| NOL1/NOP2/sun family putative RNA methylase [Aciduliprofundum sp.
MAR08-339]
gi|432136019|gb|AGB05288.1| NOL1/NOP2/sun family putative RNA methylase [Aciduliprofundum sp.
MAR08-339]
Length = 303
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
F+E +P IR NTLK +L L +G + G + ++ P GAT
Sbjct: 22 FIEMISMPQPYWIRVNTLKIGEEELIARLEKKGFKFERFGNLNAYRILSMPVKHP-GATI 80
Query: 63 EYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
E+ G+Y +Q S AP + A +M+N G + AND+S
Sbjct: 81 EHSLGYYYVQDLSSMAPVFALDPRKDDVILDMAAAPGSKTTMIAEIMENEGTIVANDISL 140
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGR 132
R K++ GN RLG+ N+++T LD R
Sbjct: 141 SRIKSLGGNLERLGITNTIMTRLDAR 166
>gi|257096821|sp|B8CPH7.2|RSMF_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 474
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPE 63
S + +PL +IR NTLK ++ + + +G + DPI W + G I + V +G T E
Sbjct: 27 SYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPI-PWCENGYWIKLDQEVQLGNTIE 85
Query: 64 YLGGHYILQGAS-----------------KYWI---CAPHRAAKLAAALMKNTGVLFAND 103
+L G + +Q AS +Y + AP AALM N G+L AN+
Sbjct: 86 HLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMASAPGSKTTQIAALMGNKGLLVANE 145
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K + N R+GV N +T D R +G+
Sbjct: 146 YSASRVKVLHANIARMGVANCALTHFDARVFGE 178
>gi|336122548|ref|YP_004577323.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus
okinawensis IH1]
gi|334857069|gb|AEH07545.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus
okinawensis IH1]
Length = 277
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 18/138 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLKT ++L L N+ V L+ + + + +GATPEYL G+Y LQ
Sbjct: 18 IRVNTLKTTPKELKDRLKNKEVKLE--DTFLDYMFKVKGAPFSMGATPEYLFGYYYLQSI 75
Query: 75 SKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +C AP + LM N GV+ AN+++++R +++ N +R
Sbjct: 76 SSTIPALVLNPYENDVVLDMCSAPGGKTTHLSQLMNNKGVIIANEINRKRMRSLKSNIYR 135
Query: 119 LGVINSVVTCLDGRQYGK 136
+G++N+++ +D + K
Sbjct: 136 MGIVNTILLNMDALRLKK 153
>gi|420335818|ref|ZP_14837418.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-315]
gi|391264424|gb|EIQ23416.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-315]
Length = 479
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLKLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWIC--------APHRAAKLA----------AALMKNTGV 98
P+G+T E+L G + +Q AS AP R +A AA M N
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEEA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>gi|217973073|ref|YP_002357824.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
OS223]
gi|217498208|gb|ACK46401.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS223]
Length = 505
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 44 FIAACD--RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLG 100
Query: 60 ATPEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNT 96
E++ G + +Q AS W C AP AALM+N
Sbjct: 101 NALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQ 160
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 161 GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 200
>gi|119775174|ref|YP_927914.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
amazonensis SB2B]
gi|146325699|sp|A1S788.1|RSMF_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|119767674|gb|ABM00245.1| NOL1/NOP2/sun family protein [Shewanella amazonensis SB2B]
Length = 467
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 13 LTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGL--VIYNSTVPIGATPEYLGGHYI 70
L+IR NTLK L L RG +P+ W + G + + P T Y G YI
Sbjct: 35 LSIRVNTLKITSDALRAILEPRGWQFEPV-PWCEDGFWVTVPDDCQPGNLTEHYQGLFYI 93
Query: 71 LQGASKYWICA-----------------PHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
+ +S CA P AALM N G++ AN+ S R+KA+
Sbjct: 94 QEASSMMPPCALFMDKEPRQLLLDVASAPGSKTTQLAALMHNQGLIIANEYSASRTKALH 153
Query: 114 GNFHRLGVINSVVTCLDGRQYG 135
N R+GV N +T DGR +G
Sbjct: 154 ANLQRMGVANVAITQFDGRVFG 175
>gi|257096816|sp|B8E968.2|RSMF_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 486
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 25 FIAACD--RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLG 81
Query: 60 ATPEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNT 96
E++ G + +Q AS W C AP AALM+N
Sbjct: 82 NALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQ 141
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 142 GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 181
>gi|308187115|ref|YP_003931246.1| rRNA methyltransferase F [Pantoea vagans C9-1]
gi|308057625|gb|ADO09797.1| putative rRNA methyltransferase F [Pantoea vagans C9-1]
Length = 460
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL +IR NTLK D L P+ W G I + ++P+G+ E+
Sbjct: 18 SQQPLRRSIRVNTLKISVADFLSQTAGYDWQLTPV-PWCDEGFWISREDESLPLGSVAEH 76
Query: 65 LGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA M N GV+ AN+ S
Sbjct: 77 LSGLFYIQEASSMLPVTALFDAQPEVSAVMDMAAAPGSKTTQIAARMGNQGVILANEFSS 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV NS +T D R +G PE+ +A++
Sbjct: 137 SRVKVLHANISRCGVSNSALTHFDARVFGPALPEQFDAIL 176
>gi|291085245|ref|ZP_06352509.2| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Citrobacter youngae ATCC 29220]
gi|291072453|gb|EFE10562.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Citrobacter youngae ATCC 29220]
Length = 462
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D +L P+ W G I ++
Sbjct: 13 DFLAAC--QRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPV-PWCAEGFWIERDDEESL 69
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 70 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNTPERVMDVAAAPGSKTTQIAARMNNHGA 129
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +AV+
Sbjct: 130 ILANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALPETFDAVL 177
>gi|418024750|ref|ZP_12663732.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS625]
gi|257096819|sp|A9L4E6.2|RSMF_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|353536036|gb|EHC05596.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS625]
Length = 486
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 25 FIAACD--RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLG 81
Query: 60 ATPEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNT 96
E++ G + +Q AS W C AP AALM+N
Sbjct: 82 NALEHIQGLFYIQEASSMLPPTALFTPSAFTTSTKWQCVLDLASAPGSKTTQMAALMQNQ 141
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 142 GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 181
>gi|160875680|ref|YP_001554996.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
OS195]
gi|378708880|ref|YP_005273774.1| RNA methylase [Shewanella baltica OS678]
gi|160861202|gb|ABX49736.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS195]
gi|315267869|gb|ADT94722.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS678]
Length = 505
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 44 FIAACD--RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLG 100
Query: 60 ATPEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNT 96
E++ G + +Q AS W C AP AALM+N
Sbjct: 101 NALEHIQGLFYIQEASSMLPPTALFTPSAFTTSTKWQCVLDLASAPGSKTTQMAALMQNQ 160
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 161 GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 200
>gi|373949785|ref|ZP_09609746.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
OS183]
gi|386324382|ref|YP_006020499.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
BA175]
gi|333818527|gb|AEG11193.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
BA175]
gi|373886385|gb|EHQ15277.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
OS183]
Length = 505
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 44 FIAACD--RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLG 100
Query: 60 ATPEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNT 96
E++ G + +Q AS W C AP AALM+N
Sbjct: 101 NALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQ 160
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 161 GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 200
>gi|212557100|gb|ACJ29554.1| Nop2p [Shewanella piezotolerans WP3]
Length = 547
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPE 63
S + +PL +IR NTLK ++ + + +G + DPI W + G I + V +G T E
Sbjct: 100 SYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPI-PWCENGYWIKLDQEVQLGNTIE 158
Query: 64 YLGGHYILQGAS-----------------KYWI---CAPHRAAKLAAALMKNTGVLFAND 103
+L G + +Q AS +Y + AP AALM N G+L AN+
Sbjct: 159 HLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMASAPGSKTTQIAALMGNKGLLVANE 218
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K + N R+GV N +T D R +G+
Sbjct: 219 YSASRVKVLHANIARMGVANCALTHFDARVFGE 251
>gi|209695043|ref|YP_002262972.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aliivibrio
salmonicida LFI1238]
gi|226725332|sp|B6ELC0.1|RSMF_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|208008995|emb|CAQ79223.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 473
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
+RPL +IR NTLK + + + LDP+ W G I + TV +G+T E+
Sbjct: 33 KRPLRRSIRVNTLKNSVEEFKKRAEEKQWQLDPV-PWCDTGFWITRQESDTVKLGSTAEH 91
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
+ G + +Q AS AP AA MKN G L AN+ S
Sbjct: 92 MAGLFYIQEASSMMPVTALLKDNDNIEMALDMASAPGSKTTQLAAGMKNKGALVANEYSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE ++++
Sbjct: 152 SRVKILCSNVQRCGVSNVALTHFDGRVFGGWLPETFDSIL 191
>gi|240103453|ref|YP_002959762.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239911007|gb|ACS33898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 309
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+S EA E P R NTL+ L + L +G I W++ G + I +
Sbjct: 27 LSIAEAMEKPLPRCFRVNTLRIEIPKLTKLLNKKGFQFRRI-PWAREGFCLTREPFSITS 85
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G +Q AS + AP A LM+N G+++A DV
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPKPGEVVADMAAAPGGKTSYLAQLMENEGIIYAFDV 145
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
+ER K N RLGV N+V+
Sbjct: 146 GEERLKETRLNLSRLGVTNTVL 167
>gi|395232341|ref|ZP_10410592.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. Ag1]
gi|394733327|gb|EJF32955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. Ag1]
Length = 482
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
SF+E Q+PL ++R NTLK D + L P+ W + G I T+
Sbjct: 29 SFIEY--CQQPLRRSLRVNTLKISVADFLTLVAPYHWRLTPV-PWCEEGFWIEREDEETL 85
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGV 98
P+G+T E+L G + + AS A P R +AAA M NTG
Sbjct: 86 PLGSTAEHLSGLFYIHEASSMLPVAALFADGNQPQRVMDVAAAPGSKTTQIAARMNNTGA 145
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 146 ILANEYSASRVKVLHANISRCGISNVALTHFDGRVFGAALPESFDAIL 193
>gi|386079143|ref|YP_005992668.1| rRNA methyltransferase F YebU [Pantoea ananatis PA13]
gi|354988324|gb|AER32448.1| rRNA methyltransferase F YebU [Pantoea ananatis PA13]
Length = 475
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGATPEYLGGHYIL 71
++R NTLK D + G L P+ W G I + ++P+G+ E+L G + +
Sbjct: 40 SLRVNTLKIGVSDFLTQTAHYGWQLTPV-PWCAEGFWINREDESLPLGSVAEHLSGLFYI 98
Query: 72 QGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
Q AS AP AA M N GV+ AN+ S R K +
Sbjct: 99 QEASSMLPVTALFAAQPDAMSVMDMAAAPGSKTTQIAACMHNRGVILANEFSASRVKVLH 158
Query: 114 GNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N R GV NS +T D R +G PE+ +A++
Sbjct: 159 ANITRCGVTNSALTHFDARVFGPALPEQFDAIL 191
>gi|90578629|ref|ZP_01234439.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
gi|90439462|gb|EAS64643.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
Length = 476
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ +T +IR NTLK D + NRG L P+ W G I TV +G
Sbjct: 28 FIACCKTPLRRSIRVNTLKISVEDFLARVANRGWTLTPV-PWCDTGFWIEREDEDTVSLG 86
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A+ M+N G L A
Sbjct: 87 NTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMASAPGSKTTQIASAMQNRGALVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N+++ R K + N R GV N+ +T DG +G PE ++++
Sbjct: 147 NELAASRIKVLHSNLQRCGVHNAALTHFDGCVFGTWAPESFDSIL 191
>gi|333926908|ref|YP_004500487.1| ribosomal RNA small subunit methyltransferase F [Serratia sp. AS12]
gi|333931862|ref|YP_004505440.1| ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica AS9]
gi|386328731|ref|YP_006024901.1| Ribosomal RNA small subunit methyltransferase F [Serratia sp. AS13]
gi|333473469|gb|AEF45179.1| Ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica AS9]
gi|333490968|gb|AEF50130.1| Ribosomal RNA small subunit methyltransferase F [Serratia sp. AS12]
gi|333961064|gb|AEG27837.1| Ribosomal RNA small subunit methyltransferase F [Serratia sp. AS13]
Length = 478
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 27/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNR-GVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK D QALVN L+PI W G I + + +G+ E+
Sbjct: 35 QRPLRRSLRVNTLKISVADF-QALVNDYDWRLEPI-PWCAEGFWIEREDEELRLGSAAEH 92
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSK 106
L G + +Q AS + PHR +AAA LM N G + AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVSALFADREKPHRVLDVAAAPGSKTTQIAALMNNQGGIVANEYSA 152
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE +A++
Sbjct: 153 SRVKVLHANISRCGVKNVALTHFDGRVFGAALPESFDAIL 192
>gi|291617715|ref|YP_003520457.1| hypothetical protein PANA_2162 [Pantoea ananatis LMG 20103]
gi|291152745|gb|ADD77329.1| YebU [Pantoea ananatis LMG 20103]
Length = 488
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGATPEYLGGHYIL 71
++R NTLK D + G L P+ W G I + ++P+G+ E+L G + +
Sbjct: 53 SLRVNTLKIGVSDFLTQTAHYGWQLTPV-PWCAEGFWINREDESLPLGSVAEHLSGLFYI 111
Query: 72 QGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
Q AS AP AA M N GV+ AN+ S R K +
Sbjct: 112 QEASSMLPVTALFEAQPDAMSVMDMAAAPGSKTTQIAACMHNRGVILANEFSASRVKVLH 171
Query: 114 GNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N R GV NS +T D R +G PE+ +A++
Sbjct: 172 ANITRCGVTNSALTHFDARVFGPALPEQFDAIL 204
>gi|378766974|ref|YP_005195439.1| rRNA methyltransferase F [Pantoea ananatis LMG 5342]
gi|365186452|emb|CCF09402.1| rRNA methyltransferase F [Pantoea ananatis LMG 5342]
Length = 488
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGATPEYLGGHYIL 71
++R NTLK D + G L P+ W G I + ++P+G+ E+L G + +
Sbjct: 53 SLRVNTLKIGVSDFLTQTAHYGWQLTPV-PWCAEGFWINREDESLPLGSVAEHLSGLFYI 111
Query: 72 QGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
Q AS AP AA M N GV+ AN+ S R K +
Sbjct: 112 QEASSMLPVTALFAAQPDAMSVMDMAAAPGSKTTQIAACMHNRGVILANEFSASRVKVLH 171
Query: 114 GNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N R GV NS +T D R +G PE+ +A++
Sbjct: 172 ANITRCGVTNSALTHFDARVFGPALPEQFDAIL 204
>gi|308049577|ref|YP_003913143.1| 16S rRNA m(5)C1407 methyltransferase [Ferrimonas balearica DSM
9799]
gi|307631767|gb|ADN76069.1| 16S rRNA m(5)C-1407 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 470
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 23/153 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEYLGGHYIL 71
+IR NTLK + + ++G L P+ W + G + + + +G T E+L G + +
Sbjct: 36 SIRVNTLKISVEGFVELMSDKGWTLTPV-PWCEEGFWLERDDESQTLGNTAEHLAGLFYI 94
Query: 72 QGASKYW--------ICAPHRAAKLA----------AALMKNTGVLFANDVSKERSKAIV 113
Q AS AP R +A AA + N G+L AN+ S R K +
Sbjct: 95 QEASSMMPPTALFTHSHAPQRVLDVASAPGSKTTQIAARLDNQGLLLANEYSSSRLKGLH 154
Query: 114 GNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N RLG+ N V+T DGR +G PE+ +A++
Sbjct: 155 ANLSRLGIRNVVMTHFDGRVFGPALPEQFDAIL 187
>gi|296101829|ref|YP_003611975.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295056288|gb|ADF61026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 480
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D + L P+ W + G I +++P+G+T E+
Sbjct: 34 QRPLRRSIRVNTLKISVADFLALVSPYHWQLTPV-PWCEEGFWIEREDEASLPLGSTAEH 92
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSK 106
L G + +Q AS A P R +AAA M N G + AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMANRGAILANEFSA 152
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 153 SRVKVLHANISRCGIQNVALTHFDGRVFGAALPEAFDAIL 192
>gi|401764178|ref|YP_006579185.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ENHKU01]
gi|400175712|gb|AFP70561.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae ENHKU01]
Length = 480
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + L P+ W G I VP+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVDDFLTLVSPYNWQLTPV-PWCAEGFWIERDDEDAVPLGST 89
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA M N G + AN+
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFAEGNAPERVMDVAAAPGSKTTQIAARMGNHGAILANE 149
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 150 FSASRVKVLHANISRCGIQNVALTHFDGRVFGAALPEAFDAIL 192
>gi|257096817|sp|A3D5D5.2|RSMF_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 486
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGAT 61
F+ A + +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 25 FIAACDKPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNA 83
Query: 62 PEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNTGV 98
E++ G + +Q AS W C AP AALM+N G+
Sbjct: 84 LEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQGL 143
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 144 LVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 181
>gi|330446010|ref|ZP_08309662.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490201|dbj|GAA04159.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 476
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ +T +IR NTLK D + NRG L P+ W G I +V +G
Sbjct: 28 FIACCKTPLRRSIRVNTLKISVEDFLARVANRGWTLTPV-PWCDTGFWIEREDEDSVSLG 86
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A M+N G L A
Sbjct: 87 NTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMASAPGSKTTQIACTMQNQGALVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N+++ R K + N R GV N+ +T DG +G PE ++++
Sbjct: 147 NELAASRIKVLHSNLQRCGVYNAALTHFDGCVFGTWAPEAFDSIL 191
>gi|345299701|ref|YP_004829059.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
asburiae LF7a]
gi|345093638|gb|AEN65274.1| Ribosomal RNA small subunit methyltransferase F [Enterobacter
asburiae LF7a]
Length = 487
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D + L PI W + G I +P+G+T E+
Sbjct: 41 QRPLRRSIRVNTLKISVTDFLALVSPYNWQLTPI-PWCEEGFWIERDDEEALPLGSTAEH 99
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSK 106
L G + +Q AS A P R +AAA M N G + AN+ S
Sbjct: 100 LSGLFYIQEASSMLPVAALFADGNTPERVMDVAAAPGSKTTQIAARMGNHGAILANEFSA 159
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 160 SRVKVLHANISRCGIHNVALTHFDGRVFGAALPEAFDAIL 199
>gi|89074302|ref|ZP_01160792.1| putative sun/nucleolar protein family protein [Photobacterium sp.
SKA34]
gi|89050006|gb|EAR55540.1| putative sun/nucleolar protein family protein [Photobacterium sp.
SKA34]
Length = 476
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ +T +IR NTLK D + NRG L P+ W G I TV +G
Sbjct: 28 FIACCKTPLRRSIRVNTLKISVEDFLVRVANRGWTLTPV-PWCDTGFWIEREDEDTVSLG 86
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A+ M+N G L A
Sbjct: 87 NTAEHMAGLFYIQEASSMMPVTALLKDNNALDCVLDMASAPGSKTTQIASAMQNRGALVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N+++ R K + N R GV N+ +T DG +G PE ++++
Sbjct: 147 NELAASRIKVLHSNLQRCGVHNAALTHFDGCVFGTWAPESFDSIL 191
>gi|126174668|ref|YP_001050817.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
OS155]
gi|386341425|ref|YP_006037791.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
OS117]
gi|125997873|gb|ABN61948.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica
OS155]
gi|334863826|gb|AEH14297.1| Ribosomal RNA small subunit methyltransferase F [Shewanella baltica
OS117]
Length = 505
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGAT 61
F+ A + +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 44 FIAACDKPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNA 102
Query: 62 PEYLGGHYILQGASKY-----------------WIC------APHRAAKLAAALMKNTGV 98
E++ G + +Q AS W C AP AALM+N G+
Sbjct: 103 LEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQGL 162
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 163 LVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 200
>gi|392979604|ref|YP_006478192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. dissolvens SDM]
gi|392325537|gb|AFM60490.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. dissolvens SDM]
Length = 480
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D + L P+ W + G I +++P+G+T E+
Sbjct: 34 QRPLRRSIRVNTLKISVADFLTLVSPYNWQLMPV-PWCEEGFWIEREDEASLPLGSTAEH 92
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSK 106
L G + +Q AS A P R +AAA M N G + AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPERVMDVAAAPGSKTTQIAARMANRGAILANEFSA 152
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 153 SRVKVLHANISRCGIQNVALTHFDGRVFGAALPETFDAIL 192
>gi|420372006|ref|ZP_14872351.1| ribosomal RNA small subunit methyltransferase F, partial [Shigella
flexneri 1235-66]
gi|391318684|gb|EIQ75787.1| ribosomal RNA small subunit methyltransferase F, partial [Shigella
flexneri 1235-66]
Length = 299
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 8 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 64
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAAL----------MKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 65 LGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAI 124
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
AN+ S K + N R G+ N +T GR +G PE +A++
Sbjct: 125 LANEFSASWVKVLHANISRCGISNVALTHFGGRVFGAAVPEMFDAIL 171
>gi|417701986|ref|ZP_12351107.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-218]
gi|417736690|ref|ZP_12385304.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 4343-70]
gi|418255613|ref|ZP_12879894.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
6603-63]
gi|146325706|sp|Q0T529.2|RSMF_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|146325707|sp|Q83RJ3.2|RSMF_SHIFL RecName: Full=Putative ribosomal RNA small subunit
methyltransferase F; AltName: Full=16S rRNA m5C1407
methyltransferase; AltName: Full=rRNA
(cytosine-C(5)-)-methyltransferase RsmF
gi|332762420|gb|EGJ92685.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 4343-70]
gi|333004220|gb|EGK23751.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-218]
gi|397898455|gb|EJL14838.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
6603-63]
Length = 479
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S K + N R G+ N +T GR +G PE +A++
Sbjct: 145 ILANEFSASWVKVLHANISRCGISNVALTHFGGRVFGAAVPEMFDAIL 192
>gi|307131294|ref|YP_003883310.1| ribosomal RNA small subunit methyltransferase F [Dickeya dadantii
3937]
gi|306528823|gb|ADM98753.1| Ribosomal RNA small subunit methyltransferase F [Dickeya dadantii
3937]
Length = 482
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TV 56
+F++A QRPL +IR NTLK D + G L+ + W G + N+ +
Sbjct: 29 AFIDA--CQRPLRRSIRINTLKISVADFLALVAPYGWELEAV-PWCDEGFWLLNADEEAM 85
Query: 57 PIGATPEYLGGHYILQGASKYWIC--------APHRAAKLAAA----------LMKNTGV 98
+G E+L G + +Q AS AP R +AAA + N G+
Sbjct: 86 RLGNALEHLAGLFYIQEASSMLPVSALFMGDDAPERVLDMAAAPGSKTTQIAARLNNQGL 145
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N HR GV N+ +T DGR +G PE +A++
Sbjct: 146 IVANEYSASRVKVLHANLHRCGVSNTALTHFDGRVFGNALPETFDAIL 193
>gi|110805371|ref|YP_688891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5
str. 8401]
gi|424837805|ref|ZP_18262442.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5a
str. M90T]
gi|110614919|gb|ABF03586.1| putative nucleolar proteins [Shigella flexneri 5 str. 8401]
gi|383466857|gb|EID61878.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5a
str. M90T]
Length = 481
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 30 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 86
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 87 PLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 146
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S K + N R G+ N +T GR +G PE +A++
Sbjct: 147 ILANEFSASWVKVLHANISRCGISNVALTHFGGRVFGAAVPEMFDAIL 194
>gi|417732337|ref|ZP_12381006.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2747-71]
gi|417743036|ref|ZP_12391577.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2930-71]
gi|332760448|gb|EGJ90737.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2747-71]
gi|332767094|gb|EGJ97289.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
2930-71]
Length = 421
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S K + N R G+ N +T GR +G PE +A++
Sbjct: 145 ILANEFSASWVKVLHANISRCGISNVALTHFGGRVFGAAVPEMFDAIL 192
>gi|415856297|ref|ZP_11531283.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2a str. 2457T]
gi|417722887|ref|ZP_12371705.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-304]
gi|417727323|ref|ZP_12376062.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-671]
gi|420341471|ref|ZP_14842972.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-404]
gi|313649129|gb|EFS13563.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri 2a str. 2457T]
gi|332762898|gb|EGJ93152.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-671]
gi|333018339|gb|EGK37638.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
flexneri K-304]
gi|391269823|gb|EIQ28721.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
K-404]
Length = 421
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S K + N R G+ N +T GR +G PE +A++
Sbjct: 145 ILANEFSASWVKVLHANISRCGISNVALTHFGGRVFGAAVPEMFDAIL 192
>gi|344915260|ref|NP_707285.3| nucleolar protein [Shigella flexneri 2a str. 301]
gi|24051702|gb|AAN42992.1| putative nucleolar protein [Shigella flexneri 2a str. 301]
Length = 406
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 13 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 69
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 70 PLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 129
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S K + N R G+ N +T GR +G PE +A++
Sbjct: 130 ILANEFSASWVKVLHANISRCGISNVALTHFGGRVFGAAVPEMFDAIL 177
>gi|419958501|ref|ZP_14474565.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae GS1]
gi|388606759|gb|EIM35965.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
subsp. cloacae GS1]
Length = 480
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPE 63
QRPL +IR NTLK + G L P+ W + G I ++P+G+T E
Sbjct: 33 CQRPLRRSIRVNTLKISVGAFLDLVSPYGWQLTPV-PWCEEGFWIERDDEESLPLGSTAE 91
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS A P R +AAA M N G + AN+ S
Sbjct: 92 HLSGLFYIQEASSMLPVAALFADGSQPERVMDVAAAPGSKTTQIAARMNNRGAILANEFS 151
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 152 ASRVKVLHANISRCGIHNVALTHFDGRVFGAALPEAFDAIL 192
>gi|397165222|ref|ZP_10488675.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
radicincitans DSM 16656]
gi|396093329|gb|EJI90886.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
radicincitans DSM 16656]
Length = 464
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E + QRPL +IR NTLK + G L P+ W + G I
Sbjct: 9 LSFDEFIAACQRPLRRSIRVNTLKISVAYFLTLVAPYGWQLTPV-PWCEEGFWIERDDEE 67
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N+
Sbjct: 68 ALPLGSTAEHLSGMFYIQEASSMLPVAALFADGEMPQRVMDVAAAPGSKTTQIAARMNNS 127
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 128 GTILANEFSASRVKVLHANISRNGIRNVALTHFDGRVFGPALPEMFDAIL 177
>gi|334124514|ref|ZP_08498519.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
hormaechei ATCC 49162]
gi|333388747|gb|EGK59920.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter
hormaechei ATCC 49162]
Length = 487
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK + G L P+ W + G I ++P+G+T
Sbjct: 38 AACQRPLRRSIRVNTLKISVGAFLDLVSPYGWQLTPV-PWCEEGFWIERDDEESLPLGST 96
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA M N G + AN+
Sbjct: 97 AEHLSGLFYIQEASSMLPVAALFADDNQPERVMDVAAAPGSKTTQIAARMNNRGAILANE 156
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 157 FSASRVKVLHANISRCGIHNVALTHFDGRVFGAALPEAFDAIL 199
>gi|378580682|ref|ZP_09829338.1| ribosomal RNA small subunit methyltransferase F [Pantoea stewartii
subsp. stewartii DC283]
gi|377816691|gb|EHT99790.1| ribosomal RNA small subunit methyltransferase F [Pantoea stewartii
subsp. stewartii DC283]
Length = 475
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
+Q+PL ++R NTLK + G L P+ W + G I + ++P+G+ E+
Sbjct: 33 SQQPLRRSLRVNTLKISVSAFLAQTAHYGWQLTPV-PWCEDGFWISREDESLPLGSVAEH 91
Query: 65 LGGHYILQGASK-------YWIC-----------APHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS + C AP AA M N G++ AN+ S
Sbjct: 92 LSGLFYIQEASSMLPVTALFDACPDAQHFMDMAAAPGSKTTQIAARMHNQGIVLANEFSS 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T D R +G PE+ +A++
Sbjct: 152 SRVKVLHANITRCGVTNTALTHFDARVFGPALPEQFDAIL 191
>gi|146312051|ref|YP_001177125.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. 638]
gi|167012767|sp|A4WBJ4.1|RSMF_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|145318927|gb|ABP61074.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter sp. 638]
Length = 480
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D + L P+ W G I +P+G+T E+
Sbjct: 34 QRPLRRSIRVNTLKISVEDFLALVSPYRWQLTPV-PWCAEGFWIEREDEDALPLGSTAEH 92
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSK 106
L G + +Q AS P R +AAA M N GV+ AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVTALFAEDNQPERVMDVAAAPGSKTTQIAARMGNRGVILANEFSA 152
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 153 SRVKVLHANISRCGISNVALTHFDGRVFGAALPESFDAIL 192
>gi|295095564|emb|CBK84654.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 465
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPE 63
QRPL +IR NTLK + G L P+ W + G I ++P+G+T E
Sbjct: 18 CQRPLRRSIRVNTLKISVGAFLDLVSPYGWQLTPV-PWCEEGFWIERDDEESLPLGSTAE 76
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS A P R +AAA M N G + AN+ S
Sbjct: 77 HLSGLFYIQEASSMLPVAALFADGNQPERVMDVAAAPGSKTTQIAARMNNRGAILANEFS 136
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 137 ASRVKVLHANISRCGIHNVALTHFDGRVFGAALPEAFDAIL 177
>gi|300717051|ref|YP_003741854.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae
Eb661]
gi|299062887|emb|CAX60007.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae
Eb661]
Length = 478
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPE 63
+Q+PL ++R NTLK D + L PI W + G I T+P+G+T E
Sbjct: 34 SQQPLRRSLRVNTLKISVADFLALVAPYQWQLTPI-PWCEEGFWISRDDADTLPLGSTAE 92
Query: 64 YLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
+L G + +Q AS AP AA M N G + AN+ S
Sbjct: 93 HLSGLFYIQEASSMLPVSALFAGCPTPETVMDVAAAPGSKTTQIAAKMGNQGAILANEYS 152
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 153 ASRVKVLHANLSRCGVSNTAMTHFDGRVFGAALPEIFDAIL 193
>gi|188533653|ref|YP_001907450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia tasmaniensis
Et1/99]
gi|254766866|sp|B2VJ83.1|RSMF_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|188028695|emb|CAO96557.1| Conserved hypothetical protein YebU [Erwinia tasmaniensis Et1/99]
Length = 478
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGAT 61
+ +Q PL ++R NTLK D + L PI W + G I T+P+G+T
Sbjct: 32 TSSQLPLRRSLRVNTLKISVDDFLTLVEPYQWALTPI-PWCQEGFWISRDDADTLPLGST 90
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS + P R +AAA M N G + AN+
Sbjct: 91 AEHLAGLFYIQEASSMLPVSALFDGGDMPQRVMDMAAAPGSKTTQIAAHMGNRGAILANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R GV N+ +T DGR +G PE +AV+
Sbjct: 151 YSASRVKVLHANLSRCGVSNTAMTHFDGRVFGPALPECFDAVL 193
>gi|14591177|ref|NP_143253.1| proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii
OT3]
gi|3257797|dbj|BAA30480.1| 315aa long hypothetical proliferating-cell nucleolar protein p120
[Pyrococcus horikoshii OT3]
Length = 315
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTLK +DL + L +G + W+K G + I +TPE+
Sbjct: 37 EAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTREPFSITSTPEF 95
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A LM+N GV++A DV + R
Sbjct: 96 LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENR 155
Query: 109 SKAIVGNFHRLGVINSVV 126
+ N RLGV+N ++
Sbjct: 156 LRETRLNLSRLGVLNVIL 173
>gi|337284479|ref|YP_004623953.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Pyrococcus yayanosii
CH1]
gi|334900413|gb|AEH24681.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Pyrococcus yayanosii
CH1]
Length = 309
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTL+ +L + L +G + W++ G + I +TPEY
Sbjct: 31 EAMEKPLPRCFRVNTLRISVPELTKRLNKKGFQFKRV-PWAREGFCLTREPFSITSTPEY 89
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A LMKN G+++A DV +ER
Sbjct: 90 LSGLLYIQEASSMYPPVALDPKPGEVVADMASAPGGKTSYMAQLMKNEGIIYAFDVGEER 149
Query: 109 SKAIVGNFHRLGVINSVV 126
K N RLGV N V+
Sbjct: 150 LKETRLNISRLGVTNVVL 167
>gi|380495954|emb|CCF31994.1| tRNA (Cytosine-5-)-methyltransferase NCL1, partial [Colletotrichum
higginsianum]
Length = 419
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKP 137
AP AA+MKNTGV+ AND SK+R+K ++GN HRLG N VV+ D R++ KP
Sbjct: 29 AAPGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNIHRLGARNVVVSNYDAREFPKP 86
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV YAL +R +V+LV T L FG EGF ++ K + P ++
Sbjct: 158 EENEAVVQYALSRRPNVRLVETNLPFGREGFTSF-MGKKFDPSLK 201
>gi|429082666|ref|ZP_19145727.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
condimenti 1330]
gi|426548547|emb|CCJ71768.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
condimenti 1330]
Length = 480
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPI-----GKWSKVGLVIYNSTVPIG 59
+ QRPL +IR NTLK + + G L P+ G W + + +P+G
Sbjct: 32 AACQRPLRRSIRVNTLKISVDAFLKQVAPYGWQLTPVPGCPEGFWIERD---DDEALPLG 88
Query: 60 ATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFA 101
+T E+L G + +Q AS A P R +AAA +M+N G + A
Sbjct: 89 STAEHLSGQFYIQEASSMLPVAALFADGNAPARVMDVAAAPGSKTTQIAAMMQNEGFILA 148
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
N+ S R K + N R G+ N +T DGR +G PE+ +A++
Sbjct: 149 NEYSASRVKVLHANISRCGIHNVGLTHFDGRVFGTALPEQFDAIL 193
>gi|341581694|ref|YP_004762186.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340809352|gb|AEK72509.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 309
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++ EA E P R NTL+ L + L +G + W++ G + I +
Sbjct: 27 LAIAEAMERPLPRCFRVNTLRIEVPKLTKLLNKKGFQFKRV-PWAREGFCLTREPFSITS 85
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G +Q AS + AP A LM+N G+++A DV
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPKPGETVADMAAAPGGKTSYLAQLMENEGIIYAFDV 145
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
+ER K N RLGV N+V+
Sbjct: 146 GEERLKETRLNLSRLGVTNTVL 167
>gi|402840535|ref|ZP_10888999.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
OBRC7]
gi|402285752|gb|EJU34233.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
OBRC7]
Length = 491
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D Q + L P+ W + G I +P+G+T
Sbjct: 45 AACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PWCEEGFWIEREDEDDLPLGST 103
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 104 AEHLSGLFYIQEASSMLPVAALFADGQMPKRVMDVAAAPGSKTTQIAARMGNEGGILANE 163
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 164 YSASRVKVLHANISRCGISNVALTHFDGRVFGAALPECFDAIL 206
>gi|375261535|ref|YP_005020705.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
KCTC 1686]
gi|365911013|gb|AEX06466.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
KCTC 1686]
Length = 477
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D Q + L P+ W + G I +P+G+T E+
Sbjct: 34 QRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PWCEEGFWIEREDEDDLPLGSTAEH 92
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFANDVSK 106
L G + +Q AS A P R +A AA M N G + AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVAALFANGQMPKRVMDVAAAPGSKTTQIAARMGNEGGILANEYSA 152
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 153 SRVKVLHANISRCGISNVALTHFDGRVFGAALPECFDAIL 192
>gi|397658640|ref|YP_006499342.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
E718]
gi|394346912|gb|AFN33033.1| Ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
E718]
Length = 462
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D Q + L P+ W + G I +P+G+T E+
Sbjct: 19 QRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PWCEEGFWIEREDEDDLPLGSTAEH 77
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFANDVSK 106
L G + +Q AS A P R +A AA M N G + AN+ S
Sbjct: 78 LSGLFYIQEASSMLPVAALFADGQMPKRVMDVAAAPGSKTTQIAARMGNEGGILANEYSA 137
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 138 SRVKVLHANISRCGISNVALTHFDGRVFGAALPECFDAIL 177
>gi|421725819|ref|ZP_16165002.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
M5al]
gi|410373402|gb|EKP28100.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella oxytoca
M5al]
Length = 478
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 72/161 (44%), Gaps = 27/161 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 64
QRPL +IR NTLK D Q + L P+ W + G I +P+G+T E+
Sbjct: 34 QRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PWCEEGFWIEREDEDDLPLGSTAEH 92
Query: 65 LGGHYILQGASKYWICA---------PHRAAKLA----------AALMKNTGVLFANDVS 105
L G + +Q AS A P R +A AA M N G + AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVAALFANDGGTPQRLMDVAAAPGSKTTQIAARMGNEGGILANEYS 152
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 153 ASRVKVLHANISRCGISNVALTHFDGRVFGAALPECFDAIL 193
>gi|212223580|ref|YP_002306816.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212008537|gb|ACJ15919.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 371
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++ EA E P R NTL+ L + L +G + W++ G + I +
Sbjct: 89 LAIAEAMEKPLPRCFRVNTLRVEIPTLTKLLNKKGFQFRRV-PWAREGFCLTREPFSITS 147
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G +Q AS + AP A LMKN G+++A DV
Sbjct: 148 TPEYLSGLLYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMKNEGIIYAFDV 207
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
+ER K N RLG+ N+++
Sbjct: 208 GEERLKETRLNLSRLGITNTIL 229
>gi|365971053|ref|YP_004952614.1| ribosomal RNA small subunit methyltransferase F [Enterobacter
cloacae EcWSU1]
gi|365749966|gb|AEW74193.1| Ribosomal RNA small subunit methyltransferase F [Enterobacter
cloacae EcWSU1]
Length = 482
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D + L P+ W G I +++P+G+T
Sbjct: 33 AACQRPLRRSIRVNTLKISVVDFLTLVSPYNWQLTPV-PWCAEGFWIERDDEASLPLGST 91
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFAND 103
E+L G + +Q AS A P R +AAA M N G + AN+
Sbjct: 92 AEHLSGLFYIQEASSMLPVAALFADDNTPERVMDVAAAPGSKTTQIAARMGNRGAILANE 151
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 152 FSASRVKVLHANISRCGIHNVALTHFDGRVFGAALPEVFDAIL 194
>gi|167624296|ref|YP_001674590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
halifaxensis HAW-EB4]
gi|189045729|sp|B0TIZ6.1|RSMF_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|167354318|gb|ABZ76931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella
halifaxensis HAW-EB4]
Length = 479
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGL-VIYNSTVPIGA 60
F+ S L+IR NTLK + + +G + DPI W G V +S + +G
Sbjct: 24 DFIAYSNKPLRLSIRVNTLKISTENFIDLMSAKGWSFDPI-PWCNQGFWVTISSDLQLGN 82
Query: 61 TPEYLGGHYILQGASKY---------------------------WICAPHRAAKLAAALM 93
T E+L G + +Q AS AP AALM
Sbjct: 83 TIEHLQGLFYIQEASSMLPPTALFDSHADNENDLSQFAQTRVLDMASAPGSKTTQIAALM 142
Query: 94 KNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
N G+L AN+ S R K + N R+GV N +T D R +G+
Sbjct: 143 NNQGLLVANEYSASRVKVLHANVARMGVSNCALTHFDARVFGE 185
>gi|292899688|ref|YP_003539057.1| hypothetical protein EAM_1978 [Erwinia amylovora ATCC 49946]
gi|428785446|ref|ZP_19002937.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
ACW56400]
gi|291199536|emb|CBJ46653.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|426277008|gb|EKV54735.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
ACW56400]
Length = 478
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VPIGATPE 63
+Q+PL ++R NTLK D Q + L PI W G I +P+G+T E
Sbjct: 34 SQQPLRRSLRVNTLKISVDDFLQLVKPYQWALTPI-PWCPEGFWISRDDADKLPLGSTAE 92
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS + P R +AAA M + G + AN+ S
Sbjct: 93 HLAGLFYIQEASSMLPVSALFAGGNMPQRVMDMAAAPGSKTTQIAACMGDRGAILANEYS 152
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DGR +G PE +AV+
Sbjct: 153 ASRVKVLHANLSRCGISNTAMTHFDGRVFGSALPECFDAVL 193
>gi|251789449|ref|YP_003004170.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya zeae Ech1591]
gi|247538070|gb|ACT06691.1| RNA methylase, NOL1/NOP2/sun family [Dickeya zeae Ech1591]
Length = 482
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TV 56
F++A +RPL ++R NTLK D + G L+ + W G + N+ T+
Sbjct: 29 DFIDA--CRRPLRRSLRVNTLKISVPDFLALVAPYGWELEAV-PWCDDGFWLLNADEETM 85
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
+G E+L G + +Q AS + P R +AAA + N GV
Sbjct: 86 RLGNALEHLSGLFYIQEASSMLPVSALLLGNDTPERVLDMAAAPGSKTTQIAARLHNQGV 145
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N HR GV N+ +T DGR +G PE +A++
Sbjct: 146 IIANEYSASRVKVLHANLHRCGVSNTALTHFDGRVFGSALPETFDAIL 193
>gi|312172646|emb|CBX80902.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia amylovora
ATCC BAA-2158]
Length = 478
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VPIGATPE 63
+Q+PL ++R NTLK D Q + L PI W G I +P+G+T E
Sbjct: 34 SQQPLRRSLRVNTLKISVDDFLQLVKPYQWALTPI-PWCPEGFWISRDDADKLPLGSTAE 92
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS + P R +AAA M + G + AN+ S
Sbjct: 93 HLAGLFYIQEASSMLPVSALFAGGNMPQRVMDMAAAPGSKTTQIAACMGDRGAILANEYS 152
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DGR +G PE +AV+
Sbjct: 153 ASRVKVLHANLSRCGISNTAMTHFDGRVFGSALPECFDAVL 193
>gi|292488502|ref|YP_003531386.1| ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
CFBP1430]
gi|291553933|emb|CBA20978.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
CFBP1430]
Length = 462
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VPIGATPE 63
+Q+PL ++R NTLK D Q + L PI W G I +P+G+T E
Sbjct: 18 SQQPLRRSLRVNTLKISVDDFLQLVKPYQWALTPI-PWCPEGFWISRDDADKLPLGSTAE 76
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS + P R +AAA M + G + AN+ S
Sbjct: 77 HLAGLFYIQEASSMLPVSALFAGGNMPQRVMDMAAAPGSKTTQIAACMGDRGAILANEYS 136
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N+ +T DGR +G PE +AV+
Sbjct: 137 ASRVKVLHANLSRCGISNTAMTHFDGRVFGSALPECFDAVL 177
>gi|423124494|ref|ZP_17112173.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5250]
gi|376399939|gb|EHT12552.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5250]
Length = 491
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D Q + L P+ W + G I +P+G+
Sbjct: 45 AACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PWCEEGFWIEREDEDDLPLGSA 103
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 104 AEHLSGLFYIQEASSMLPVAALFAGGETPQRVMDVAAAPGSKTTQIAARMGNEGGILANE 163
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 164 YSASRVKVLHANISRCGISNVALTHFDGRVFGAALPECFDAIL 206
>gi|157961750|ref|YP_001501784.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella pealeana
ATCC 700345]
gi|189045730|sp|A8H3W2.1|RSMF_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|157846750|gb|ABV87249.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella pealeana
ATCC 700345]
Length = 488
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 67/170 (39%), Gaps = 36/170 (21%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGL-VIYNSTVPIGA 60
F+ S L+IR NTLK + + +G + +PI W K G V + +G
Sbjct: 24 DFIAYSNKPLRLSIRVNTLKISHDNFIDLMTPKGWHFEPI-PWCKDGFWVTLTQEIQLGN 82
Query: 61 TPEYLGGHYILQGASKY----------------------------------WICAPHRAA 86
T E+L G + +Q AS AP
Sbjct: 83 TIEHLQGLFYIQEASSMLPPTALFEPLEVAVAAENTEDDGSDDFSNKIVLDMASAPGSKT 142
Query: 87 KLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
AALMKN G+L AN+ S R K + N R+GV N +T D R +G+
Sbjct: 143 TQIAALMKNQGLLIANEYSASRVKVLHANVARMGVANCALTHFDARVFGE 192
>gi|227328622|ref|ZP_03832646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 484
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPEY 64
QRPL +IR NTLK Q + G L+PI W + G + N+ +G T E+
Sbjct: 35 QRPLRRSIRVNTLKISVDAFLQLVQPYGWQLEPI-PWCQEGFWLLNAEEENTRLGNTLEH 93
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA + N G + AN+ S
Sbjct: 94 LSGLFYIQEASSMLPVSALFHRNDALETVLDVAAAPGSKTTQIAARLNNEGAIIANEYSA 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 154 SRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFDAIL 193
>gi|257096818|sp|A6WP46.2|RSMF_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 486
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W + G I Y+ +G
Sbjct: 25 FIAACD--RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLG 81
Query: 60 ATPEYLGGHYILQGASKY-----------------W------ICAPHRAAKLAAALMKNT 96
E++ G + +Q AS W AP AALM+N
Sbjct: 82 NALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQYVLDLASAPGSKTTQMAALMQNQ 141
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+G + +T DGR +G+
Sbjct: 142 GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGE 181
>gi|336311765|ref|ZP_08566725.1| tRNA/RNA cytosine-C5-methylase [Shewanella sp. HN-41]
gi|335864712|gb|EGM69787.1| tRNA/RNA cytosine-C5-methylase [Shewanella sp. HN-41]
Length = 486
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIG 59
F+ A + RPL +IR NTLK D + +G DPI W G I Y+ +G
Sbjct: 25 FIAACD--RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCADGFWISYDEEEQLG 81
Query: 60 ATPEYLGGHYILQGASKY-----------------W------ICAPHRAAKLAAALMKNT 96
E++ G + +Q AS W AP AALM N
Sbjct: 82 NALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQSVLDLASAPGSKTTQIAALMHNQ 141
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
G+L AN+ S R K + N R+GV + +T DGR +G+
Sbjct: 142 GLLVANEYSASRVKVLHANVLRMGVSHCALTHFDGRVFGE 181
>gi|385871650|gb|AFI90170.1| Ribosomal RNA small subunit methyltransferase F [Pectobacterium sp.
SCC3193]
Length = 464
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPE 63
QRPL +IR NTLK Q + G L+PI W + G + N+ + +G T E
Sbjct: 14 CQRPLRRSIRVNTLKISVDAFRQLVQPYGWQLEPI-PWCQEGFWLLNTEEESTRLGNTLE 72
Query: 64 YLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
+L G + +Q AS AP AA + N G + AN+ S
Sbjct: 73 HLSGLFYIQEASSMLPVSALFHRNDALGTILDVAAAPGSKTTQIAARLNNEGAIVANEYS 132
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 133 ASRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFDAIL 173
>gi|354597787|ref|ZP_09015804.1| Ribosomal RNA small subunit methyltransferase F [Brenneria sp.
EniD312]
gi|353675722|gb|EHD21755.1| Ribosomal RNA small subunit methyltransferase F [Brenneria sp.
EniD312]
Length = 484
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 27/164 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS----TVPIGA 60
+ QRPL +IR NTLK + + L+PI W + G + N+ T+ +G
Sbjct: 32 ATCQRPLRRSIRVNTLKIDSAAFLKLVEPYQWRLEPI-PWCRDGFWLLNADDDETLRLGN 90
Query: 61 TPEYLGGHYILQGASK--------YWICAPHRAAKLAAA----------LMKNTGVLFAN 102
T E+L G + +Q AS + AP R +AAA M N G + AN
Sbjct: 91 TLEHLSGLFYIQEASSMLPVGALFHHDAAPRRVLDVAAAPGSKTTQIAAAMDNQGAIIAN 150
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ S R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 151 EYSASRVKVLHANISRCGVGNTALTHFDGRVFGAALPEYFDAIL 194
>gi|453065630|gb|EMF06591.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia marcescens
VGH107]
Length = 478
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL ++R NTLK D + + L+PI W G I + + +G+
Sbjct: 32 AACQRPLRRSLRVNTLKISVADFLVLVQDYDWRLEPI-PWCAEGFWIERDDEELRLGSAA 90
Query: 63 EYLGGHYILQGASKYWI--------CAPHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS AP+R +AAA LM N G + AN+
Sbjct: 91 EHLSGLFYIQEASSMLPVSALFAGDAAPNRVLDVAAAPGSKTTQIAALMGNQGGIVANEY 150
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 151 SASRVKVLHANISRCGVKNTALTHFDGRVFGAALPESFDAIL 192
>gi|441505243|ref|ZP_20987231.1| Ribosomal RNA small subunit methyltransferase F [Photobacterium sp.
AK15]
gi|441427098|gb|ELR64572.1| Ribosomal RNA small subunit methyltransferase F [Photobacterium sp.
AK15]
Length = 476
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ +T +IR NTLK D + ++G L P+ W + G I +V +G
Sbjct: 28 FIACCKTPLRRSIRVNTLKISVEDFLTRVADKGWTLTPV-PWCETGFWIEREDEDSVSLG 86
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A M+N G L A
Sbjct: 87 NTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMASAPGSKTTQIACAMENRGALVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
N+++ R K + N R GV N+ +T DG +G PE ++++
Sbjct: 147 NELAASRIKVLHSNLQRCGVYNAALTHFDGCVFGGWAPESFDSIL 191
>gi|153000967|ref|YP_001366648.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
OS185]
gi|151365585|gb|ABS08585.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica
OS185]
Length = 505
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D + +G DPI W + G I Y+ +G E++ G
Sbjct: 50 RPLRRSIRVNTLKISSDDFKTLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNALEHIQG 108
Query: 68 HYILQGASKY-----------------W------ICAPHRAAKLAAALMKNTGVLFANDV 104
+ +Q AS W AP AALM+N G+L AN+
Sbjct: 109 LFYIQEASSMLPPTALFTPSAFTTSAKWQYVLDLASAPGSKTTQMAALMQNQGLLVANEY 168
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K + N R+G + +T DGR +G+
Sbjct: 169 SASRVKVLHANVLRMGASHCALTHFDGRVFGE 200
>gi|271500348|ref|YP_003333373.1| NOL1/NOP2/sun family RNA methylase [Dickeya dadantii Ech586]
gi|270343903|gb|ACZ76668.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech586]
Length = 482
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TV 56
F++A QRPL +IR NTLK D + G ++ + W G + N+ +
Sbjct: 29 DFIDA--CQRPLRRSIRVNTLKISVPDFLTLVAPYGWEMEAV-PWCHDGFWLLNADEEAM 85
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
+G E+L G + +Q AS + P R +AAA + N G+
Sbjct: 86 RLGNALEHLSGLFYIQEASSMLPVSALFMGHDTPERVLDMAAAPGSKTTQIAAHLNNQGL 145
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N HR GV N+ +T DGR +G PE +A++
Sbjct: 146 IVANEYSASRVKVLHANLHRCGVSNTTLTHFDGRVFGNALPETFDAIL 193
>gi|350525803|ref|YP_002581368.2| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
gi|345650622|gb|EEB73106.2| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
Length = 337
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++ EA E P R NTL+ L + L +G + W++ G + I +
Sbjct: 55 LAIAEAMEKPLPRCFRVNTLRIEVPKLTKLLNKKGFQFRRV-PWAREGFCLTREPFSITS 113
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G +Q AS + AP A LM+N G+++A DV
Sbjct: 114 TPEYLSGLLYIQEASSMYPPVALEPKPGETVADMASAPGGKTSYLAQLMENEGIIYAFDV 173
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
++R K N RLGV N+V+
Sbjct: 174 GEDRLKETRLNLSRLGVTNTVL 195
>gi|442611403|ref|ZP_21026109.1| Ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747331|emb|CCQ12171.1| Ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 478
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 26/152 (17%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY-----NSTVPIGAT 61
+RPL ++R NTLK + NR + PI W G + T+PIG T
Sbjct: 32 CKRPLRRSVRVNTLKMSVERFMEECRNRDWEIHPI-PWCNEGFWLSRPSTEEETLPIGNT 90
Query: 62 PEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFAND 103
+L G +Q AS AP AA M NTGVL AN+
Sbjct: 91 DLHLSGCIYVQEASSMLPPEALFQDLSKGQIVLDIAAAPGSKTTQIAAYMNNTGVLVANE 150
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
S R K +V N R+GV N++++ +G +G
Sbjct: 151 YSSSRVKVLVANLKRMGVSNTLISHFNGNVFG 182
>gi|448241893|ref|YP_007405946.1| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445212257|gb|AGE17927.1| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
Length = 503
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL ++R NTLK D + + L+PI W G I + + +G+
Sbjct: 57 AACQRPLRRSLRVNTLKISVADFLVLVQDYDWRLEPI-PWCAEGFWIERDDEELRLGSAA 115
Query: 63 EYLGGHYILQGASKYWI--------CAPHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS AP+R +AAA LM N G + AN+
Sbjct: 116 EHLSGLFYIQEASSMLPVSALFAGDAAPNRVLDVAAAPGSKTTQIAALMGNQGGIVANEY 175
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 176 SASRVKVLHANISRCGVKNTALTHFDGRVFGAALPESFDAIL 217
>gi|423103640|ref|ZP_17091342.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5242]
gi|376385282|gb|EHS98003.1| ribosomal RNA small subunit methyltransferase F [Klebsiella oxytoca
10-5242]
Length = 491
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 61
+ QRPL +IR NTLK D Q + L P+ W + G I +P+G+
Sbjct: 45 AACQRPLRRSIRVNTLKITVADFLQLVAPYRWQLTPV-PWCEEGFWIEREDEDDLPLGSA 103
Query: 62 PEYLGGHYILQGASKYWICA--------PHRAAKLA----------AALMKNTGVLFAND 103
E+L G + +Q AS A P R +A AA M N G + AN+
Sbjct: 104 AEHLSGLFYIQEASSMLPVAALFADGQMPKRVMDVAAAPGSKTTQIAARMGNEGGILANE 163
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 164 YSASRVKVLHANISRCGISNVALTHFDGRVFGAALPECFDAIL 206
>gi|390960428|ref|YP_006424262.1| hypothetical protein CL1_0256 [Thermococcus sp. CL1]
gi|390518736|gb|AFL94468.1| hypothetical protein CL1_0256 [Thermococcus sp. CL1]
Length = 309
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++ EA E P R NTL+ L + L +G + W++ G + I +
Sbjct: 27 LAIAEAMERPLPRCFRVNTLRIEVPRLTKLLNKKGFQFRRV-PWAREGFCLTREPFSITS 85
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G +Q AS + AP A LM+N G+++A DV
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPGPGETVADMAAAPGGKTSHMAQLMENRGIIYAFDV 145
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
+ER K N RLGV N+V+
Sbjct: 146 GEERLKETRLNLSRLGVTNAVL 167
>gi|409095647|ref|ZP_11215671.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 309
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++ EA E P R NTL+ L + L +G + W++ G + + +
Sbjct: 27 LAIAEAMEKPLPRCFRVNTLRIEVPKLTKLLNKKGFQFKRV-PWAREGFCLTREPFAVTS 85
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G +Q AS + AP A LM+N G+++A DV
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALEPKPGETVADMAAAPGGKTSYLAQLMENKGIIYAFDV 145
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
++R K N RLGV N+V+
Sbjct: 146 GEDRLKETRLNLSRLGVTNTVL 167
>gi|14520982|ref|NP_126457.1| nucleolar protein [Pyrococcus abyssi GE5]
gi|5458199|emb|CAB49688.1| Nucleolar protein from the nop2 family [Pyrococcus abyssi GE5]
gi|380741536|tpe|CCE70170.1| TPA: nucleolar protein [Pyrococcus abyssi GE5]
Length = 311
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
+A E P R NTLK ++L + L +G + W++ G + I +TPEY
Sbjct: 33 QAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV-PWAREGFCLTREPFSITSTPEY 91
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A LM+N GV++A DV ++R
Sbjct: 92 LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDR 151
Query: 109 SKAIVGNFHRLGVINSVV 126
K N RLGV+N ++
Sbjct: 152 LKETRINLSRLGVLNVIL 169
>gi|332159596|ref|YP_004424875.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
gi|331035059|gb|AEC52871.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
Length = 309
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTLK ++L + L +G + W++ G + I +TPE+
Sbjct: 31 EAMEKPLPRCFRVNTLKISIQELTKRLNKKGFQFKRV-PWAREGFCLTREPFSITSTPEF 89
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A LM+N G+++A DV ++R
Sbjct: 90 LTGLIYIQEASSMYPPVALDPKPNEIVADMAAAPGGKTSYLAQLMENKGIIYAFDVDEDR 149
Query: 109 SKAIVGNFHRLGVINSVV 126
+ N RLGV+N V+
Sbjct: 150 LRETRLNLSRLGVLNVVL 167
>gi|57640807|ref|YP_183285.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
gi|57159131|dbj|BAD85061.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
kodakarensis KOD1]
Length = 309
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
++ EA E P R NTL+ L + L +G + W++ G + I +
Sbjct: 27 LAIAEAMERPLPRCFRVNTLRIEVHKLTKLLNKKGFQFKRV-PWAREGFCLTREPFSITS 85
Query: 61 TPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL G +Q AS + AP A LM+N G+++A DV
Sbjct: 86 TPEYLSGLLYIQEASSMYPPVALGPKPGEVVADMAAAPGGKTSYMAQLMENGGIIYAFDV 145
Query: 105 SKERSKAIVGNFHRLGVINSVV 126
++R + N RLGV N+++
Sbjct: 146 GEDRLRETRLNLSRLGVTNTIL 167
>gi|385788568|ref|YP_005819677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia sp. Ejp617]
gi|310767840|gb|ADP12790.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia sp. Ejp617]
Length = 472
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VPIGATPE 63
+Q+PL ++R NTLK D + + L PI W G I +P+G+T E
Sbjct: 28 SQQPLRRSLRVNTLKISVDDFLRLVEPYQWALTPI-PWCPEGFWISRDDADKLPLGSTAE 86
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS + P R +AAA M + G + AN+ S
Sbjct: 87 HLAGLFYIQEASSMLPVSALFAGGHMPQRVMDMAAAPGSKTTQIAACMGDRGAILANEYS 146
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +AV+
Sbjct: 147 ASRVKVLHANLSRCGVSNTAMTHFDGRVFGPALPECFDAVL 187
>gi|261821411|ref|YP_003259517.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
wasabiae WPP163]
gi|261605424|gb|ACX87910.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium wasabiae
WPP163]
Length = 484
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPEY 64
QRPL +IR NTLK Q + G L+PI W + G + N+ +G T E+
Sbjct: 35 QRPLRRSIRVNTLKISVDAFRQLVQPYGWQLEPI-PWCQEGFWLLNTEEENTRLGNTLEH 93
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA + N G + AN+ S
Sbjct: 94 LSGLFYIQEASSMLPVSALFHRNDALGTILDVAAAPGSKTTQIAARLNNEGAIVANEYSA 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 154 SRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFDAIL 193
>gi|34809569|pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
EA E P R NTLK +DL + L +G + W+K G + I +TPE+
Sbjct: 37 EAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTREPFSITSTPEF 95
Query: 65 LGGHYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLFANDVSKER 108
L G +Q AS + AP A L +N GV++A DV + R
Sbjct: 96 LTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENR 155
Query: 109 SKAIVGNFHRLGVINSVV 126
+ N RLGV+N ++
Sbjct: 156 LRETRLNLSRLGVLNVIL 173
>gi|257096815|sp|A8GDM6.2|RSMF_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 478
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL ++R NTLK D + + L+PI W G I + + +G+
Sbjct: 32 AACQRPLRRSLRVNTLKISVTDFLTLVQDYDWRLEPI-PWCAEGFWIERGDEELRLGSAA 90
Query: 63 EYLGGHYILQGASKYWIC--------APHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS AP R +AAA LM N G + AN+
Sbjct: 91 EHLSGLFYIQEASSMLPVSALFAGAEAPSRVLDVAAAPGSKTTQIAALMNNQGGIVANEY 150
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R GV N +T DGR +G PE +A++
Sbjct: 151 SASRVKVLHANISRCGVKNVALTHFDGRVFGAALPESFDAIL 192
>gi|288549761|ref|ZP_05968079.2| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Enterobacter cancerogenus ATCC 35316]
gi|288317737|gb|EFC56675.1| ribosomal RNA small subunit methyltransferase F
(rRNA(cytosine-C(5)-)-methyltransferase RsmF)
[Enterobacter cancerogenus ATCC 35316]
Length = 487
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPE 63
QRPL +IR NTLK + + L P+ W + G I +P+G+T E
Sbjct: 40 CQRPLRRSIRVNTLKISVEAFLELVSPYRWQLTPV-PWCEEGFWIERDDEEALPLGSTAE 98
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS A P R +AAA M N G + AN+ S
Sbjct: 99 HLSGLFYIQEASSMLPVAALFADGNLPARVMDVAAAPGSKTTQIAARMGNQGAILANEFS 158
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R G+ N +T DGR +G PE +A++
Sbjct: 159 ASRVKVLHANISRCGIHNVALTHFDGRVFGAALPETFDAIL 199
>gi|157370355|ref|YP_001478344.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia
proteamaculans 568]
gi|157322119|gb|ABV41216.1| putative RNA methylase, NOL1/NOP2/sun family [Serratia
proteamaculans 568]
Length = 503
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL ++R NTLK D + + L+PI W G I + + +G+
Sbjct: 57 AACQRPLRRSLRVNTLKISVTDFLTLVQDYDWRLEPI-PWCAEGFWIERGDEELRLGSAA 115
Query: 63 EYLGGHYILQGASKYWIC--------APHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS AP R +AAA LM N G + AN+
Sbjct: 116 EHLSGLFYIQEASSMLPVSALFAGAEAPSRVLDVAAAPGSKTTQIAALMNNQGGIVANEY 175
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R GV N +T DGR +G PE +A++
Sbjct: 176 SASRVKVLHANISRCGVKNVALTHFDGRVFGAALPESFDAIL 217
>gi|421079729|ref|ZP_15540667.1| Ribosomal RNA small subunit methyltransferase F [Pectobacterium
wasabiae CFBP 3304]
gi|401705815|gb|EJS96000.1| Ribosomal RNA small subunit methyltransferase F [Pectobacterium
wasabiae CFBP 3304]
Length = 464
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPEY 64
QRPL +IR NTLK Q + G L+PI W + G + N+ +G T E+
Sbjct: 15 QRPLRRSIRVNTLKISVDAFLQIVQPYGWQLEPI-PWCQEGFWLLNTEEENTRLGNTLEH 73
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA + N G + AN+ S
Sbjct: 74 LSGLFYIQEASSMLPVSALFHRNDTLGTILDVAAAPGSKTTQIAARLNNGGAIVANEYSA 133
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 134 SRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFDAIL 173
>gi|315427045|dbj|BAJ48662.1| tRNA and rRNA cytosine-C5-methylases [Candidatus Caldiarchaeum
subterraneum]
gi|343485713|dbj|BAJ51367.1| tRNA and rRNA cytosine-C5-methylases [Candidatus Caldiarchaeum
subterraneum]
Length = 320
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 69/154 (44%), Gaps = 28/154 (18%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNL------------DPIGK-----WS 45
LEA P + R NTLK R + L G+ + +P G W
Sbjct: 34 LLEAYSRPLPDSFRVNTLKIDRENCLILLREEGLTVRRIPFTVDGFYAEPEGLLTDSLWH 93
Query: 46 KVGLVIYNSTVPIGATPEYLG---GHYILQGASKYWICA-PHRAAKLAAALMKNTGVLFA 101
+G V V I T E L GH++L +CA P AA ++ GV+ A
Sbjct: 94 MLGYVYAQGPVSILVT-ELLDVEPGHWVLD------LCAAPGSKTTHIAARLRGEGVVVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
NDVS+ R KA+ N R GV+N V+T DGR++G
Sbjct: 147 NDVSRTRIKALSSNMQRCGVVNGVLTLADGRRFG 180
>gi|50121390|ref|YP_050557.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
atrosepticum SCRI1043]
gi|81827103|sp|Q6D4C8.1|RSMF_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|49611916|emb|CAG75365.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 484
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPEY 64
QRPL +IR NTLK Q G L+PI W + G + N+ +G T E+
Sbjct: 35 QRPLRRSIRVNTLKISVDAFLQLAQPYGWQLEPI-PWCQEGFWLLNAEEENTRLGNTLEH 93
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA + N G + AN+ S
Sbjct: 94 LSGLFYIQEASSMLPASALFHHNDAPGTILDVAAAPGSKTTQIAARLNNEGAIVANEYSA 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 154 SRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFDAIL 193
>gi|440230611|ref|YP_007344404.1| 16S rRNA m(5)C-1407 methyltransferase [Serratia marcescens FGI94]
gi|440052316|gb|AGB82219.1| 16S rRNA m(5)C-1407 methyltransferase [Serratia marcescens FGI94]
Length = 479
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL ++R NTLK D + L+PI W G I + ++ +G+
Sbjct: 32 AACQRPLRRSLRVNTLKISVADFLARVKEYDWQLEPI-PWCAEGFWIARDDESLRLGSAA 90
Query: 63 EYLGGHYILQGASKYWIC--------APHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS AP R +AAA LM N G + AN+
Sbjct: 91 EHLSGLFYIQEASSMLPVSALFAGGDAPTRVLDVAAAPGSKTTQIAALMHNQGGIVANEY 150
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N +T DGR +G PE +A++
Sbjct: 151 AASRVKVLHANISRCGVSNCALTHFDGRVFGAALPEAFDAIL 192
>gi|421783182|ref|ZP_16219633.1| ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica A30]
gi|407754622|gb|EKF64754.1| ribosomal RNA small subunit methyltransferase F [Serratia
plymuthica A30]
Length = 478
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATPEY 64
QRPL ++R NTLK D + + L+PI W G I + + +G+ E+
Sbjct: 34 CQRPLRRSLRVNTLKISVADFQALVQDYDWRLEPI-PWCAEGFWIEREDEELRLGSAAEH 92
Query: 65 LGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVSK 106
L G + +Q AS + P R +AAA LM N G + AN+ S
Sbjct: 93 LSGLFYIQEASSMLPVSALFADREKPRRVLDVAAAPGSKTTQIAALMNNQGGIVANEYSA 152
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE +A++
Sbjct: 153 SRVKVLHANISRCGVKNVALTHFDGRVFGAALPESFDAIL 192
>gi|288932371|ref|YP_003436431.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
gi|288894619|gb|ADC66156.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
Length = 328
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 12 PLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLV--IYNSTVPIGATPEYLGGHY 69
P IR NT+K +L + L RG L+ ++V + IGATPE+L G+Y
Sbjct: 49 PKYIRVNTIKISEDELVERLEERGFVLNK----TEVPFCYEVVEEPYSIGATPEFLMGYY 104
Query: 70 ILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
+ S +P A + + LMKN GVL A + ++ER ++
Sbjct: 105 YVMDKSSCIPPIELNPKESDLVVDMAASPGGKATMISMLMKNKGVLIAIEGNEERIPPLI 164
Query: 114 GNFHRLGVINSVVTCLDGRQY 134
N HR+GV+N++V ++ ++
Sbjct: 165 DNIHRMGVMNAIVLRMNSAKF 185
>gi|227111581|ref|ZP_03825237.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 484
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPEY 64
QRPL +IR NTLK + + G L+PI W + G + N+ +G T E+
Sbjct: 35 QRPLRRSIRVNTLKISVDAFLELVQPYGWQLEPI-PWCQEGFWLLNAEEENTRLGNTLEH 93
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA + N G + AN+ S
Sbjct: 94 LSGLFYIQEASSMLPVSALFHRNDALDTVLDVAAAPGSKTTQIAARLNNEGAIVANEYSA 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 154 SRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFDAIL 193
>gi|11499621|ref|NP_070863.1| proliferating-cell nucleolar antigen P120 [Archaeoglobus fulgidus
DSM 4304]
gi|2648496|gb|AAB89215.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus DSM 4304]
Length = 324
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP--IG 59
+ A E P IR NTLK + L + L +RG L K ++V P IG
Sbjct: 39 DIIRAFEEGIPKYIRINTLKIDEKGLLERLESRGFKL----KKTEVPYCFEVVEEPYSIG 94
Query: 60 ATPEYLGGHYILQGASKYWICAPHRAAK---------LAAA----------LMKNTGVLF 100
ATPEYL G+Y + S C P A + LAA+ LM+N G +
Sbjct: 95 ATPEYLMGYYYVMDKSS---CIPPLALEPKPGEVVVDLAASPGGKTTFLSMLMENKGAVI 151
Query: 101 ANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
A + KER + ++ N +R+G +N V +DGR+
Sbjct: 152 AVEPQKERLQPLIDNINRMGAMNVAVINVDGRR 184
>gi|403058348|ref|YP_006646565.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402805674|gb|AFR03312.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 458
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPEY 64
QRPL +IR NTLK + + G L+PI W + G + N+ +G T E+
Sbjct: 9 QRPLRRSIRVNTLKISVDAFLELVQPYGWQLEPI-PWCQEGFWLLNAEEENTRLGNTLEH 67
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AA + N G + AN+ S
Sbjct: 68 LSGLFYIQEASSMLPVSALFHRNDAQETVLDVAAAPGSKTTQIAARLNNEGAIVANEYSA 127
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 128 SRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFDAIL 167
>gi|261403075|ref|YP_003247299.1| RNA methylase [Methanocaldococcus vulcanius M7]
gi|261370068|gb|ACX72817.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus vulcanius
M7]
Length = 265
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK + L L +G+ L + + S IG+TPEYL G+Y+ Q
Sbjct: 4 IRVNTLKIDPKTLKNRLERKGIVLKE--TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 61
Query: 75 SKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +C AP A +M N G + A ++SK R+KA+ N +R
Sbjct: 62 SSMIPPIVLNPKEDDFVLDMCSAPGGKTTHLAQIMNNNGCIVAVEISKTRTKALKSNINR 121
Query: 119 LGVINSVVTCLDGR 132
+GV+N+++ D R
Sbjct: 122 MGVLNTIIINKDMR 135
>gi|330833874|ref|YP_004408602.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4]
gi|329566013|gb|AEB94118.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4]
Length = 336
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS--TVPIGATPEYLGGHYILQ 72
IR N+LK + L++ L N+G L I +WSK G + S T IG+T EY+ G Y +Q
Sbjct: 64 IRCNSLKIDCKTLSENLENKGFTLSRI-EWSKFGYRVEKSPSTPSIGSTIEYMKGQYYIQ 122
Query: 73 GASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNF 116
G + +P A LM N+G + A + + R K I N
Sbjct: 123 GEASMIPPEALSPKEGELVLDMASSPGGKTTHIAQLMNNSGSIIALESNPARLKKIRSNI 182
Query: 117 HRLGVINSVVTCLDGRQYGK 136
RLGV N ++ L G + K
Sbjct: 183 ARLGVTNVILLLLRGEEVSK 202
>gi|270261528|ref|ZP_06189801.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
4Rx13]
gi|270045012|gb|EFA18103.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
4Rx13]
Length = 480
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL ++R NTLK D + + L+PI W G I + + +G+
Sbjct: 32 AACQRPLRRSLRVNTLKISVADFQALVQDYDWRLEPI-PWCAEGFWIEREDEELRLGSAA 90
Query: 63 EYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS + P R +AAA LM N G + AN+
Sbjct: 91 EHLSGLFYIQEASSMLPVSALFADREKPRRVLDVAAAPGSKTTQIAALMNNQGGIVANEY 150
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R GV N +T DGR +G PE +A++
Sbjct: 151 SASRVKVLHANISRCGVKNVALTHFDGRVFGAALPESFDAIL 192
>gi|127512512|ref|YP_001093709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella loihica
PV-4]
gi|167012768|sp|A3QDA2.1|RSMF_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|126637807|gb|ABO23450.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella loihica
PV-4]
Length = 486
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 25/154 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGL-VIYNSTVPIGATPE 63
S +PL +IR NTLK D + +G +P+ W + G V + +V +G T E
Sbjct: 27 SYCAKPLRPSIRVNTLKITTADFITMMNAKGWQFEPV-PWCEDGFWVKVDDSVQLGNTVE 85
Query: 64 YLGGHYILQGASKY---------------------WICAPHRAAKLAAALMKNTGVLFAN 102
++ G + +Q AS AP AA+M N G+L AN
Sbjct: 86 HIQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASAPGSKTTQLAAMMNNQGLLVAN 145
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ S R K + N R+G N +T D R +GK
Sbjct: 146 EYSSSRVKVLHANVQRMGASNLALTHFDARVFGK 179
>gi|327400250|ref|YP_004341089.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6]
gi|327315758|gb|AEA46374.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6]
Length = 319
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 22/154 (14%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLV--IYNSTVPI 58
+ +EA E P IR NTLK ++L + L R + + ++V + I
Sbjct: 38 VELIEAMEKGVPKYIRVNTLKIEEKELIRRLEKRKF----VVEQTEVPFCYKVVGEPYSI 93
Query: 59 GATPEYLGGHY-ILQGASKY---------------WICAPHRAAKLAAALMKNTGVLFAN 102
GATPEYL G+Y ++ AS + +P A LM N GVL A
Sbjct: 94 GATPEYLMGYYYVMDKASCIPPLALSPSSRDVVVDFAASPGGKTTFLAQLMGNRGVLLAI 153
Query: 103 DVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ + +R + ++ N HR+GV+N+ V ++ ++ K
Sbjct: 154 EANPDRIQPLIDNIHRMGVLNAAVVQMNAAKFHK 187
>gi|259908244|ref|YP_002648600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia pyrifoliae
Ep1/96]
gi|387871089|ref|YP_005802462.1| ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
DSM 12163]
gi|224963866|emb|CAX55368.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
Ep1/96]
gi|283478175|emb|CAY74091.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
DSM 12163]
Length = 462
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VPIGATPE 63
+Q+PL ++R NTLK D + + L PI W G I +P+G+T E
Sbjct: 18 SQQPLRRSLRVNTLKISVDDFLRLVEPYQWALTPI-PWCPEGFWISRDDADKLPLGSTAE 76
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G +Q AS + P R +AAA M + G + AN+ S
Sbjct: 77 HLAGLLYIQEASSMLPVSALFAGGHMPQRVMDMAAAPGSKTTQIAACMGDRGAILANEYS 136
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +AV+
Sbjct: 137 ASRVKVLHANLSRCGVSNTAMTHFDGRVFGSALPECFDAVL 177
>gi|253688235|ref|YP_003017425.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|259495489|sp|C6DFU6.1|RSMF_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|251754813|gb|ACT12889.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 484
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPE 63
QRPL +IR NTLK + + G L+PI W + G + N+ +G T E
Sbjct: 34 CQRPLRRSIRVNTLKISVEAFLRLVQPYGWQLEPI-PWCQEGFWLLNAEEENTRLGNTLE 92
Query: 64 YLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
+L G + +Q AS AP AA + N G + AN+ S
Sbjct: 93 HLSGLFYIQEASSMLPVSALFHRNEALETVLDVAAAPGSKTTQIAARLDNKGAIVANEYS 152
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 153 ASRVKVLHANISRCGVSNTAMTHFDGRVFGAALPEYFDAIL 193
>gi|91793400|ref|YP_563051.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
denitrificans OS217]
gi|123356754|sp|Q12MJ8.1|RSMF_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|91715402|gb|ABE55328.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella
denitrificans OS217]
Length = 505
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGL-VIYNSTVPIGATPEYLGG 67
RPL +IR NTL+ D + RG + P+ W G + +G E++ G
Sbjct: 31 RPLRQSIRVNTLRISSEDFIALMTPRGWSFSPV-PWCSDGFWITLTHDEQLGNCLEHIQG 89
Query: 68 HYILQGASKYWIC------------APHRAAKLA----------AALMKNTGVLFANDVS 105
+ +Q AS AP R +A AALM N G+L AN+ S
Sbjct: 90 LFYIQEASSMLPPTALFTNDDADERAPLRVLDMASAPGSKTTQMAALMNNNGLLIANEYS 149
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K + N R+GV N +T DGR +G+
Sbjct: 150 ASRVKVLHANVLRMGVSNCALTHFDGRVFGE 180
>gi|342326226|gb|AEL23028.1| nucleolar protein 1 [Cherax quadricarinatus]
Length = 100
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNK 174
EENEAVV YAL+KR+VKLVPTGLD G G+V YR+N+
Sbjct: 20 EENEAVVEYALKKRNVKLVPTGLDIGKPGYVKYRENR 56
>gi|342306137|dbj|BAK54226.1| RNA (m5C) methyltransferase [Sulfolobus tokodaii str. 7]
Length = 335
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGA 60
FL + ++R N L L + + N+G L+ + W K G ++ Y S +GA
Sbjct: 51 FLYSCSFPLKKSVRCNDLLIECNKLEKIMENKGFKLEKVS-WLKHGYIVKQYPSKPSLGA 109
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
T EYL G+Y +QG + AP A LMKN G++ A +
Sbjct: 110 TIEYLSGYYYIQGLASMVPPYVLDPNENDLVLDMAAAPGSKTTQLAQLMKNKGLIVAVEK 169
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
S+ER K++ N +R+ + N V+ D R
Sbjct: 170 SRERIKSLYSNVNRMKIKNVVLLRADAR 197
>gi|114563407|ref|YP_750920.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
frigidimarina NCIMB 400]
gi|122299557|sp|Q081I3.1|RSMF_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|114334700|gb|ABI72082.1| putative RNA methylase, NOL1/NOP2/sun family protein [Shewanella
frigidimarina NCIMB 400]
Length = 484
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY-NSTVPIGATPEYLGG 67
+PL +IR NTLK + + G L P+ W G I + +G E++ G
Sbjct: 31 KPLRKSIRVNTLKISTAQFVHIMTSAGWQLSPV-PWCADGFWIEGKDDIQLGNAIEHIQG 89
Query: 68 HYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS AP A AALM N+G+L AN+ S R
Sbjct: 90 LFYIQEASSMLPPTALFSNDNTAEIVLDVASAPGSKATQIAALMNNSGLLVANEYSASRV 149
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G ++ +T DGR YG+
Sbjct: 150 KVLHANVLRMGASHTALTHFDGRVYGE 176
>gi|413923704|gb|AFW63636.1| hypothetical protein ZEAMMB73_244854, partial [Zea mays]
Length = 125
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KR+VKLVP GLDFG GF+ YR+++ + EK R P
Sbjct: 61 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFHTS--LEKTRRFYP 109
>gi|15920491|ref|NP_376160.1| Sun family protein [Sulfolobus tokodaii str. 7]
Length = 353
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGA 60
FL + ++R N L L + + N+G L+ + W K G ++ Y S +GA
Sbjct: 69 FLYSCSFPLKKSVRCNDLLIECNKLEKIMENKGFKLEKVS-WLKHGYIVKQYPSKPSLGA 127
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
T EYL G+Y +QG + AP A LMKN G++ A +
Sbjct: 128 TIEYLSGYYYIQGLASMVPPYVLDPNENDLVLDMAAAPGSKTTQLAQLMKNKGLIVAVEK 187
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGR 132
S+ER K++ N +R+ + N V+ D R
Sbjct: 188 SRERIKSLYSNVNRMKIKNVVLLRADAR 215
>gi|297618702|ref|YP_003706807.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
gi|297377679|gb|ADI35834.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
Length = 322
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 7 SETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG 66
+E Q IR NTL+ +L + L N+ V L+ + + +S +GATPEYL
Sbjct: 56 AEFQNYKYIRVNTLQIAPEELKKRLENKKVVLE--DTFLDYAFKVVSSPFSVGATPEYLY 113
Query: 67 GHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSK 110
G+Y +Q S +CA P A L++N GV+FA +V+K R +
Sbjct: 114 GYYFMQSISSMVPVIALNPQKNERILDMCAAPGGKTTHIAQLLENEGVIFAVEVNKNRIR 173
Query: 111 AIVGNFHRLGVINSVVTCLDG 131
++ N +R+G+ + V D
Sbjct: 174 SLTSNVNRMGIKDVVTINTDS 194
>gi|146325695|sp|Q6LQU5.2|RSMF_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 476
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ + T +IR NTLK D + ++ L P+ W G I +V +G
Sbjct: 28 FIASCRTPLRRSIRVNTLKISVEDFLVRVSDKDWTLTPV-PWCDTGFWIEREDEKSVSLG 86
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A M+N GVL A
Sbjct: 87 NTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGVLVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
N+++ R K + N R GV N+ +T DG +G PE + ++
Sbjct: 147 NELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTIL 191
>gi|54309113|ref|YP_130133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium
profundum SS9]
gi|46913545|emb|CAG20331.1| putative sun/nucleolar protein family protein [Photobacterium
profundum SS9]
Length = 484
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ + T +IR NTLK D + ++ L P+ W G I +V +G
Sbjct: 36 FIASCRTPLRRSIRVNTLKISVEDFLVRVSDKDWTLTPV-PWCDTGFWIEREDEKSVSLG 94
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A M+N GVL A
Sbjct: 95 NTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGVLVA 154
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
N+++ R K + N R GV N+ +T DG +G PE + ++
Sbjct: 155 NELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTIL 199
>gi|386824836|ref|ZP_10111965.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia plymuthica
PRI-2C]
gi|386378281|gb|EIJ19089.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia plymuthica
PRI-2C]
Length = 478
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 29/161 (18%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVN--LDPIGKWSKVGLVIY--NSTVPIGATPE 63
QRPL ++R NTLK D QALV +G + L+P+ W G I + + +G+ E
Sbjct: 35 QRPLRRSLRVNTLKISVADF-QALV-QGYDWRLEPV-PWCAEGFWIERGDEELRLGSAAE 91
Query: 64 YLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDVS 105
+L G + +Q AS + P R +AAA LM N G + AN+ S
Sbjct: 92 HLSGLFYIQEASSMLPVSALFADREKPRRVLDVAAAPGSKTTQIAALMNNQGGIVANEYS 151
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N +T DGR +G PE +A++
Sbjct: 152 ASRVKVLHANISRCGVKNVALTHFDGRVFGAALPESFDAIL 192
>gi|293396403|ref|ZP_06640681.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
DSM 4582]
gi|291421192|gb|EFE94443.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
DSM 4582]
Length = 479
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ QRPL +IR NTLK + + L PI W G I + + +G+
Sbjct: 32 AACQRPLRRSIRVNTLKISVDGFLALVKDYDWQLAPI-PWCAEGFWITRDDDALRLGSAA 90
Query: 63 EYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVLFANDV 104
E+L G + +Q AS + P R +AAA LM N G + AN+
Sbjct: 91 EHLSGLFYIQEASSMLPVSALFSAGETPRRVLDVAAAPGSKTTQIAALMNNRGGIVANEY 150
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
S R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 151 SASRVKVLHANLSRCGVKNAALTHFDGRVFGAALPESFDAIL 192
>gi|227484654|ref|ZP_03914970.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
lactolyticus ATCC 51172]
gi|227237374|gb|EEI87389.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
lactolyticus ATCC 51172]
Length = 428
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 11 RPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYI 70
R L IR NTLK R DL + L+ G ++ GK S L++ N + + + G +
Sbjct: 171 RDLAIRVNTLKISREDLKKLLIKAGFEIED-GKISPNSLLVKNPA-GLASCEAFKDGLFT 228
Query: 71 LQGASKYWI----------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVG 114
+Q + + AP A KNTG + AND+SK ++K I+
Sbjct: 229 IQQEASMKVVEVLNPKENSKILDLCAAPGTKTTYLAEFTKNTGKIIANDISKAKNKLILE 288
Query: 115 NFHRLGVINSVVTCLDGRQYGKPEENE 141
N RL + N +T D + ENE
Sbjct: 289 NIQRLALENISLTNYDASTFVSAFENE 315
>gi|159905923|ref|YP_001549585.1| RNA methylase [Methanococcus maripaludis C6]
gi|159887416|gb|ABX02353.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus maripaludis C6]
Length = 275
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK DL + L +GV L+ + + S +G+TPEYL G+Y LQ
Sbjct: 17 IRVNTLKISSEDLKKRLEEKGVELE--DTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSI 74
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LM+N G + A +++K R K++ N +R
Sbjct: 75 SSIIPSVTLNPTKDDNLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINR 134
Query: 119 LGVINSVV 126
+G N+++
Sbjct: 135 MGFKNTLM 142
>gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 323
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 66/151 (43%), Gaps = 26/151 (17%)
Query: 1 MSFLEASETQRPL--------TIRTNTLKTRRRDLAQALVN-RGVNLDPIGKWSKVGLVI 51
++FL SET+R L IRTNT+ +L + L RG L + VG I
Sbjct: 28 LTFLGRSETERLLKHMEDIRPAIRTNTILIDPEELRRVLEEKRGFELKRCPEPVDVGFWI 87
Query: 52 YNST-VPIGATPEYLGGHYILQGASKYW----------------ICAPHRAAKLAAALMK 94
N + IGAT EY+ G+Y+ Q A+ AP A LM
Sbjct: 88 LNDPPISIGATLEYMMGYYVPQDAASMLPPVVLDPKPGDRVLDACAAPGGKTTHLAQLMD 147
Query: 95 NTGVLFANDVSKERSKAIVGNFHRLGVINSV 125
N G L A DV +R +A+ N R GV N+V
Sbjct: 148 NEGTLIAIDVDPDRMRALKSNLARCGVANAV 178
>gi|392309140|ref|ZP_10271674.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas
citrea NCIMB 1889]
Length = 521
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 24/156 (15%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS-----TVP 57
FL+A ++ ++R NTLK D +++P+ W G + S ++P
Sbjct: 68 FLQACKSPLRRSVRVNTLKMSVSDFKSYCAAHDWSIEPV-PWCDSGFWLTRSETEEHSLP 126
Query: 58 IGATPEYLGGHYILQGAS--------KYWI----------CAPHRAAKLAAALMKNTGVL 99
IG T +L G +Q AS K+ I AP +A+M N GVL
Sbjct: 127 IGNTELHLSGCIYVQEASSMLPPVALKHAIEDSDTVLDMASAPGSKTSQLSAMMDNKGVL 186
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
AN++S R K + N R+G+ N ++ D +G
Sbjct: 187 IANELSSSRLKVLAANMKRMGIANCALSHFDAAIFG 222
>gi|429217623|ref|YP_007175613.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
gi|429134152|gb|AFZ71164.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
Length = 330
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ LEA+E P TIR N R +L + LVN+G + I + G I +S +GA
Sbjct: 46 IDLLEANEIPMPQTIRCNDFLIRCDELEKRLVNKGFKIKKI-PFLPHGYEIISSPYKVGA 104
Query: 61 TPEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDV 104
T EYL G+Y LQ + AP + L K+ L + ++
Sbjct: 105 THEYLMGYYYLQDPGSMLVVYLMNPKKNSFIIDMASAPGGKSSQILQLTKDNVKLVSVEL 164
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQ 133
K+R K++ N R+G + ++ +D R+
Sbjct: 165 KKDRIKSLRSNLQRMGFSSYIILEIDARK 193
>gi|396494724|ref|XP_003844374.1| hypothetical protein LEMA_P020250.1 [Leptosphaeria maculans JN3]
gi|312220954|emb|CBY00895.1| hypothetical protein LEMA_P020250.1 [Leptosphaeria maculans JN3]
Length = 377
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 78 WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVV 126
AP AALMKNTG +FAND +K+R+K ++GN HRLGV N++V
Sbjct: 14 MTAAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVRNAIV 62
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV YAL KR +VKLV TGL FG EGF K + P M+
Sbjct: 145 EENEQVVQYALNKRPNVKLVETGLTFGKEGFTKI-GGKIFHPSMK 188
>gi|385303599|gb|EIF47663.1| nucleolar protein nop2 [Dekkera bruxellensis AWRI1499]
Length = 282
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 81 APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
AP AA+MKNTG +FAND +K R+KA+V N HRLG N +V D R++ K
Sbjct: 4 APGGKTTYIAAMMKNTGCVFANDSNKARTKALVANIHRLGCENVIVCNYDAREFPK 59
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNK 174
+E+E VV+YALRKR +VKLV TGL G EGF +YR K
Sbjct: 132 DEDECVVDYALRKRPNVKLVDTGLAIGKEGFTSYRGKK 169
>gi|6502552|gb|AAF14354.1|AF113138_1 nucleolar protein Nop2 [Eremothecium gossypii]
Length = 240
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 81 APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
AP +A+MKNTG +FAND +K R+K+++ N HRLG N++V D R++ K
Sbjct: 14 APGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPK 69
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENEAVV+YALRKR +VKLV TGL G EG +YR K + P
Sbjct: 142 EENEAVVDYALRKRPNVKLVETGLAIGKEGSTSYR-GKKFHPHYH 185
>gi|291522210|emb|CBK80503.1| tRNA and rRNA cytosine-C5-methylases [Coprococcus catus GD/7]
Length = 467
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FL++ + +R NT KT+ ++L Q + GV+L + W++ G + N P
Sbjct: 24 FLKSYDLPFHNGLRINTWKTKPQELLQRM---GVDLKQV-PWNETGFYLENKKQ-FSKHP 78
Query: 63 EYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSK 106
Y GG Y +Q AS +CA P + A +K G+L +ND+SK
Sbjct: 79 YYQGGLYYIQEASAMLPAKLVNAQPGEKILDMCAAPGGKSTAIGAALKGEGLLISNDISK 138
Query: 107 ERSKAIVGNFHRLGVINSVVT 127
R+KA++ N G+INS+V
Sbjct: 139 SRAKALLRNLEGFGIINSIVV 159
>gi|238013066|gb|ACR37568.1| unknown [Zea mays]
gi|413923703|gb|AFW63635.1| hypothetical protein ZEAMMB73_244854 [Zea mays]
Length = 239
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
ENEAV++YAL+KR+VKLVP GLDFG GF+ YR+++ +
Sbjct: 4 ENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFH 41
>gi|374633149|ref|ZP_09705516.1| NOL1/NOP2/sun family putative RNA methylase [Metallosphaera
yellowstonensis MK1]
gi|373524633|gb|EHP69510.1| NOL1/NOP2/sun family putative RNA methylase [Metallosphaera
yellowstonensis MK1]
Length = 336
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTV--PIGA 60
F+++ Q ++R NTL+T + L + RG L + W++ G V+ N+ V +G+
Sbjct: 52 FMKSCSAQLKRSLRCNTLRTDCKKLEDRMNERGFKLSKVS-WTRYGYVVENTPVRPTLGS 110
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
T EY+ G+Y +QG + +P A LM N GV+ A +
Sbjct: 111 TLEYMKGYYYIQGLASMIPPEVLSPSEDDLVLDMAASPGGKTSQLAQLMGNRGVIVALEK 170
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDG 131
+ R + + N RLGV N++ + G
Sbjct: 171 NTARLRRLNSNLARLGVANTITVPIPG 197
>gi|256823370|ref|YP_003147333.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Kangiella koreensis
DSM 16069]
gi|256796909|gb|ACV27565.1| RNA methylase, NOL1/NOP2/sun family [Kangiella koreensis DSM 16069]
Length = 479
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 9 TQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPI----GATP 62
+Q+PL +IR N L+ + + G LDPI W G I + P+ G
Sbjct: 29 SQKPLRKSIRINPLRANKEVVVNEWQQAGYKLDPI-PWCDDGFWIDETYKPLADGFGKLL 87
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
+L G + +Q +S AP +A M N G++ AN++
Sbjct: 88 PHLAGQFYIQESSSMLPVSALFAAHPDPTMVLDVAAAPGSKTTQISAAMNNDGLVVANEL 147
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K + N R GV N+++ DGRQ+G+
Sbjct: 148 SSSRLKVLYANLERTGVSNTILCHHDGRQFGE 179
>gi|358410649|gb|AEU10038.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium
damselae subsp. piscicida]
Length = 476
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ +T +IR NTLK D + + ++G L P+ W G I ++V +G
Sbjct: 28 FVACCKTPLRRSIRVNTLKISVSDFLERVADKGWTLTPV-PWCDTGFWIERDDETSVSLG 86
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A M+N G L A
Sbjct: 87 NTAEHMAGLFYIQEASSMMPVTALLKDNDNLDVVLDMASAPGSKTTQIACAMENRGALVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
N+++ R K + N R GV + +T +G +G PE ++++
Sbjct: 147 NELAASRIKVLHSNLQRCGVYSVALTHFNGCVFGGWAPESFDSIL 191
>gi|308801203|ref|XP_003077915.1| ABC transporter C family protein (ISS) [Ostreococcus tauri]
gi|116056366|emb|CAL52655.1| ABC transporter C family protein (ISS) [Ostreococcus tauri]
Length = 1665
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENEAVV+Y LRKRDVK+V +GL+FG +GF +YR K++ P ++
Sbjct: 1498 EENEAVVDYILRKRDVKIVSSGLEFGRKGFTSYR-GKNFHPSVEH 1541
>gi|90410339|ref|ZP_01218355.1| putative sun/nucleolar protein family protein [Photobacterium
profundum 3TCK]
gi|90328580|gb|EAS44864.1| putative sun/nucleolar protein family protein [Photobacterium
profundum 3TCK]
Length = 476
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 24/165 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
F+ + T +IR NTLK D + ++ L P+ W G I +V +G
Sbjct: 28 FIASCRTPLRRSIRVNTLKISVEDFLIRVSDKDWTLTPV-PWCDTGFWIEREDEKSVSLG 86
Query: 60 ATPEYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFA 101
T E++ G + +Q AS AP A M+N G L A
Sbjct: 87 NTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMAAAPGSKTTQIACAMQNRGALVA 146
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
N+++ R K + N R GV N+ +T DG +G PE + ++
Sbjct: 147 NELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTIL 191
>gi|335039089|ref|ZP_08532274.1| RNA methylase, NOL1/NOP2/sun family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181016|gb|EGL83596.1| RNA methylase, NOL1/NOP2/sun family [Caldalkalibacillus thermarum
TA2.A1]
Length = 465
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F ++ E R +R NTLK + QAL +L+P+ W+K G + + P
Sbjct: 21 AFFQSYEQPRHYGLRINTLKWTVEEALQAL---PFHLEPV-PWAKEGFYFHEADRP-AKH 75
Query: 62 PEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVS 105
P Y G Y +Q S +CA P + AA +K GVL +ND+S
Sbjct: 76 PYYHAGLYYIQEPSAMAPGAMIPIEPGDKVLDLCAAPGGKSTQIAARLKGKGVLVSNDIS 135
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
ER K +V N GV N +VT
Sbjct: 136 AERVKPLVKNLELFGVRNGIVT 157
>gi|150402304|ref|YP_001329598.1| NOL1/NOP2/sun family RNA methylase [Methanococcus maripaludis C7]
gi|150033334|gb|ABR65447.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
maripaludis C7]
Length = 265
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IRTNTLK DL + L +GV L+ + + S +G+TPEYL G+Y LQ
Sbjct: 7 IRTNTLKISSEDLKKRLEEKGVVLE--DTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSI 64
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LM+N G + A +++K R K++ N +R
Sbjct: 65 SSIIPSITLNPSKDDDVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINR 124
Query: 119 LGVINSVV 126
+G N+++
Sbjct: 125 MGFKNTLM 132
>gi|296089949|emb|CBI39768.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 139 ENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
ENEAV++YAL+KR+VKLVP GLDFG GF +R+++ + + EK R P
Sbjct: 94 ENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFH--QSLEKTRRFYP 142
>gi|392548176|ref|ZP_10295313.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas
rubra ATCC 29570]
Length = 485
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 24/156 (15%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY-----NSTVP 57
F+ + T +R NTLK ++ +++PI W + G + + +P
Sbjct: 34 FIASCRTGLRRAVRVNTLKMSLQEFEHQAAQLNWHIEPI-PWCEQGYWLTRPAEEEANLP 92
Query: 58 IGATPEYLGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVL 99
IG T +L G +Q AS AP AALM+N G+L
Sbjct: 93 IGNTALHLSGCIYVQEASSMLPPMALATSLTPGEHVLDMAAAPGSKTSQLAALMENQGIL 152
Query: 100 FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
AN++S R K + R+GV N ++ DG+ +G
Sbjct: 153 IANELSSSRLKTLAATLKRMGVANCALSHFDGQVFG 188
>gi|389861252|ref|YP_006363492.1| ribosomal RNA methyltransferase NOP2 [Thermogladius cellulolyticus
1633]
gi|388526156|gb|AFK51354.1| ribosomal RNA methyltransferase NOP2 [Thermogladius cellulolyticus
1633]
Length = 341
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 1 MSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP- 57
+ LEA E RPL +R NT L + L G L+ + + V+ + P
Sbjct: 48 LKLLEAFE--RPLKPVVRANTFLVEPDKLRRRLEEMGFGLEKVPWYHGAFRVVSSPGHPT 105
Query: 58 IGATPEYLGG-HYILQGASKYW----------------ICAPHRAAKLAAALMKNTGVLF 100
IGAT EYL G +Y+ + AS AP A AA L+ GV++
Sbjct: 106 IGATHEYLKGLYYVHRDASALAPVLLLLHEYRGDVLDACAAPGGKATFAAQLLVGHGVVY 165
Query: 101 ANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
AND+ R +A+V +F R+ + N+VVT D R+ K
Sbjct: 166 ANDIHLPRLRALVSHFMRMKLPNNVVTWADARRLPK 201
>gi|340624444|ref|YP_004742897.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis X1]
gi|339904712|gb|AEK20154.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis X1]
Length = 265
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK +L L +GVNL+ + + S +G+TPEYL G+Y LQ
Sbjct: 7 IRVNTLKISSEELKNRLEEKGVNLE--DTFLDYVFRVAKSPFSMGSTPEYLLGYYFLQSI 64
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LM+N G + A +++K R K++ N +R
Sbjct: 65 SSIIPSITLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINR 124
Query: 119 LGVINSVV 126
+G N+++
Sbjct: 125 MGFKNTLM 132
>gi|213648231|ref|ZP_03378284.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
Length = 201
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 58 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 116
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 117 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 176
Query: 97 GVLFANDVSKERSKAIVGNFHRLGV 121
G + AN+ S R K + N R G+
Sbjct: 177 GAILANEFSASRVKVLHANISRCGI 201
>gi|322833557|ref|YP_004213584.1| RNA methylase [Rahnella sp. Y9602]
gi|384258727|ref|YP_005402661.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Rahnella aquatilis
HX2]
gi|321168758|gb|ADW74457.1| RNA methylase, NOL1/NOP2/sun family [Rahnella sp. Y9602]
gi|380754703|gb|AFE59094.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Rahnella aquatilis
HX2]
Length = 505
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP---IGATPEY 64
QRPL ++R NTLK D + +L+P+ W G I + +G +
Sbjct: 56 QRPLRPSLRVNTLKISVEDFLTLAGSYQWDLEPV-PWCTEGFWINRHALDESRLGNALSH 114
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AALM+N G + AN+ S
Sbjct: 115 LAGLFYIQEASSMLPVTALFADGTQPTLVMDVAAAPGSKTTQIAALMENQGGIVANEYSA 174
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 175 SRVKVLHANISRCGVSNTALTHFDGRVFGAALPETFDAIL 214
>gi|373456730|ref|ZP_09548497.1| RNA methylase, NOL1/NOP2/sun family [Caldithrix abyssi DSM 13497]
gi|371718394|gb|EHO40165.1| RNA methylase, NOL1/NOP2/sun family [Caldithrix abyssi DSM 13497]
Length = 466
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 19/151 (12%)
Query: 12 PLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYIL 71
P IR NT+KT ++ + L V P+ ++ GL+I + +P+ T ++ G +
Sbjct: 30 PRAIRVNTIKTTVAEVKKRLEQWNVPFRPVS-FNPEGLIIEDDHMPLSQTLDFFLGKFYY 88
Query: 72 QGASKYW---ICAPHRAAKL-------------AAALMKNTGVLFANDVSKERSKAIVGN 115
QG S + P + K+ AA+M NTG L NDVS +R +A+ N
Sbjct: 89 QGVSSQLPAVVLNPQKGDKVLDLAASPGSKSTQMAAMMDNTGFLVLNDVSMKRIQALNTN 148
Query: 116 FHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+G +N + G + G PE + V+
Sbjct: 149 IQNIGSVNYAIYRQPGERIGNILPEYFDKVL 179
>gi|134045502|ref|YP_001096988.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
gi|132663127|gb|ABO34773.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
Length = 277
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK DL + L +GV L+ + + S +G+TPEYL G+Y LQ
Sbjct: 19 IRINTLKISSEDLKKRLEEKGVELE--DTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSI 76
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LM+N G + A +++K R K++ N +R
Sbjct: 77 SSIIPSITLNPTKDDDLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINR 136
Query: 119 LGVINSVV 126
+G N+++
Sbjct: 137 MGFKNTLM 144
>gi|333910084|ref|YP_004483817.1| RNA methylase [Methanotorris igneus Kol 5]
gi|333750673|gb|AEF95752.1| RNA methylase, NOL1/NOP2/sun family [Methanotorris igneus Kol 5]
Length = 264
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L L N+GV L + + S +GATPEYL G+Y +Q
Sbjct: 6 IRVNTLKINPETLKNRLENKGVMLKE--TFLPYAFEVLESPFSVGATPEYLFGYYFVQSI 63
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LM N G + A ++ R K++ N +R
Sbjct: 64 SSMIPPIVLNPSKDDLVLDMCAAPGGKTTHLAQLMNNEGAIIAVEIKSSRMKSLKANINR 123
Query: 119 LGVINSVV 126
+G+ N ++
Sbjct: 124 MGIANVIM 131
>gi|45358689|ref|NP_988246.1| proliferating-cell nucleolar antigen [Methanococcus maripaludis S2]
gi|45047555|emb|CAF30682.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis S2]
Length = 292
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK +L L +GVNL+ + + S +G+TPEYL G+Y LQ
Sbjct: 34 IRVNTLKISSEELKTRLEEKGVNLE--DTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSI 91
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LM+N G + A +++K R K++ N +R
Sbjct: 92 SSIIPSITLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINR 151
Query: 119 LGVINSVV 126
+G N+++
Sbjct: 152 MGFKNTLM 159
>gi|442804124|ref|YP_007372273.1| ribosomal RNA small subunit methyltransferase F [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442739974|gb|AGC67663.1| ribosomal RNA small subunit methyltransferase F [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 461
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
F+ A +R +R N+LK DL + P+ WS G I + + P G
Sbjct: 32 EFISALNEERVTGLRINSLKI---DLDTWEKITPFEIQPV-PWSSCGFYIEDDSRP-GTH 86
Query: 62 PEYLGGHYILQGASKYW---------------ICAPHRAAKLA-AALMKNTGVLFANDVS 105
P Y G Y +Q S + +CA +A AA MKN G L +ND++
Sbjct: 87 PYYHAGLYYIQEPSAMFPAEVLAVEPGDRVLDLCAAPGGKTVALAAAMKNQGFLLSNDIN 146
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
+R KA+V N G+ N+VVT
Sbjct: 147 PKRIKALVKNIELCGITNAVVT 168
>gi|448608995|ref|ZP_21660274.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
gi|445747372|gb|ELZ98828.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
Length = 313
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+FLEA E P +R NT+KT +AL + GV +P W L + NS+ P
Sbjct: 16 AFLEACERSLPSVVRVNTIKTTVERAREALDDEGVAYEPT-DWHPGILKLENSS-PGTNW 73
Query: 62 PEYLGGHY-------------ILQGASKYW--ICAPHRAAKLAAALMKNTGVLFANDVSK 106
P + G + Q + W AP AA+M + GVL ND +
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERIWDTCAAPGSKTTQIAAMMDDEGVLIGNDNNL 133
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQY 134
R A+ N RLGV N VV+ D R +
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNF 161
>gi|375085444|ref|ZP_09732083.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
gi|374567314|gb|EHR38537.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
Length = 442
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLV---------- 50
+ + + T PL +RTNTLKT R++L L+N G + P K + G++
Sbjct: 166 IKLCQFNNTNAPLVLRTNTLKTTRQELITELINAGCEVIP-SKLAPEGIICKTHTSLNQL 224
Query: 51 --IYNSTVPIGATPEYLGGHYILQGASKYWI--C-APHRAAKLAAALMKNTGVLFANDVS 105
+ N + L H + +++ I C AP A LM+N G + A D+
Sbjct: 225 APLQNGFAQVQDESSMLVAHVVDPKPNEFIIDTCSAPGGKTTHMATLMQNKGKIIACDIY 284
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEA 142
+ + K I N +RLG+ LD R+ G +N+A
Sbjct: 285 EHKLKLIQDNANRLGINIIEPKLLDAREIGNQYKNQA 321
>gi|383190725|ref|YP_005200853.1| NOL1/NOP2/sun family putative RNA methylase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
gi|371588983|gb|AEX52713.1| NOL1/NOP2/sun family putative RNA methylase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
Length = 505
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 26/160 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP---IGATPEY 64
QRPL ++R NTLK D + +L+P+ W G I + +G +
Sbjct: 56 QRPLRPSLRVNTLKISVADFLTLAGSYQWDLEPV-PWCAEGFWINRHALDESRLGNALSH 114
Query: 65 LGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
L G + +Q AS AP AALM+N G + AN+ S
Sbjct: 115 LAGLFYIQEASSMLPVTALFAHDTQPTLVMDVAAAPGSKTTQIAALMENQGGIVANEYSA 174
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
R K + N R GV N+ +T DGR +G PE +A++
Sbjct: 175 SRVKVLHANISRCGVSNTALTHFDGRVFGAALPETFDAIL 214
>gi|349802993|gb|AEQ16969.1| hypothetical protein [Pipa carvalhoi]
Length = 138
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQE 182
EENE VV+YAL+KR+VKLVPTGL FG EGFV +++ + + P +++
Sbjct: 66 EENECVVDYALKKRNVKLVPTGL-FGKEGFVRFKERR-FHPSLKQ 108
>gi|288932862|ref|YP_003436922.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
gi|288895110|gb|ADC66647.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
10642]
Length = 306
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQG 73
+ R NTLK + + + L + L+ + W K G +Y I TPE+ G +Q
Sbjct: 37 SFRVNTLKIDVKSVVERL-SEEFELERVP-WCKEGFFVYGEG--ITKTPEFALGLIFMQE 92
Query: 74 ASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFH 117
AS AP + M NTG + ANDV R ++ N
Sbjct: 93 ASSMIPPVVMDLKENLFVLDMAAAPGAKTTQISQYMNNTGCVIANDVKYSRLNILISNVQ 152
Query: 118 RLGVINSVVTCLDGRQYGK 136
+ G IN VVT DGR +G+
Sbjct: 153 KYGCINVVVTEKDGRYFGR 171
>gi|15897196|ref|NP_341801.1| proliferating cell nuclear antigen [Sulfolobus solfataricus P2]
gi|284174441|ref|ZP_06388410.1| proliferating cell nuclear antigen [Sulfolobus solfataricus 98/2]
gi|384433709|ref|YP_005643067.1| RNA methylase [Sulfolobus solfataricus 98/2]
gi|13813389|gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus
solfataricus P2]
gi|261601863|gb|ACX91466.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus solfataricus 98/2]
Length = 339
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 21/137 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP---IGATPEYLGGHYI 70
+IR NTLKT + L + ++ +G L+ + KW + G V+ T P +G+T EYL G+Y
Sbjct: 65 SIRCNTLKTDCKKLEEIMLEKGFVLEKV-KWLQHGYVV-KRTPPKPSLGSTLEYLMGYYH 122
Query: 71 LQGASKY---WICAPHR---AAKLAAA----------LMKNTGVLFANDVSKERSKAIVG 114
+QG + ++ P +AAA +M+N G++ A + + R +A++
Sbjct: 123 IQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQIMQNKGLVIAVEKKRSRIRALLS 182
Query: 115 NFHRLGVINSVVTCLDG 131
N +RLG N V+ D
Sbjct: 183 NVNRLGAENVVLIKTDA 199
>gi|343423773|emb|CCD18057.1| NOL1/NOP2/sun family protein, putative, (fragment) [Trypanosoma
vivax Y486]
Length = 251
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 93 MKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
MKNTGV+FANDVS+ R+K++ N RLGV N++VT DG Y + +N
Sbjct: 1 MKNTGVIFANDVSEPRTKSLNANLQRLGVTNTIVTNYDGVGYERVMKN 48
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSY 176
EENEAVV++ LR R V +V TGL FG G YR ++ +
Sbjct: 113 EENEAVVDFVLRHRAVTVVDTGLPFGRPGLAKYRHHRFH 151
>gi|337283863|ref|YP_004623337.1| nucleolar protein [Pyrococcus yayanosii CH1]
gi|334899797|gb|AEH24065.1| nucleolar protein [Pyrococcus yayanosii CH1]
Length = 313
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEYLGGHYI 70
+IR NTLK + + L R L+P+ W + G I TV G PEY G I
Sbjct: 38 SIRINTLKAPLELVLERLSER-YELEPV-PWVREGFFIRPPGGGTVNFGEMPEYSLGLVI 95
Query: 71 LQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVG 114
Q AS AP A M+N G + AND ++R+ ++
Sbjct: 96 PQEASSMIPPVVLEPKPGELILDMAAAPGSKTTQIAQYMENEGCIIANDAKRDRANILIA 155
Query: 115 NFHRLGVINSVVTCLDGRQYGKPE 138
N +R GV+ + VT DG +G+ E
Sbjct: 156 NLNRAGVLIAKVTVRDGAYFGRYE 179
>gi|90407006|ref|ZP_01215196.1| Sun/nucleolar protein family protein [Psychromonas sp. CNPT3]
gi|90311877|gb|EAS39972.1| Sun/nucleolar protein family protein [Psychromonas sp. CNPT3]
Length = 481
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 62/162 (38%), Gaps = 27/162 (16%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPI 58
FL+A QRPL +R NTLK D L I W G I P+
Sbjct: 28 FLDAC--QRPLRPAVRVNTLKISIDDFKLLASEHNWQLSSI-PWCTEGFWIDAGEQLTPL 84
Query: 59 GATPEYLGGHYILQGASKY--------------------WICAPHRAAKLAAALMKNTGV 98
G + E+L G LQ AS AP AA M N G+
Sbjct: 85 GNSFEHLSGLCYLQEASSMLPVSALSHFFKTDEHSTILDMAAAPGSKTTQLAAQMNNQGL 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN 140
L AN+ S R K + N R G+ N +T DG+ +G EN
Sbjct: 145 LIANEYSASRVKILHANMQRCGIKNVALTHFDGKIFGSWLEN 186
>gi|125975638|ref|YP_001039548.1| NOL1/NOP2/sun family RNA methylase [Clostridium thermocellum ATCC
27405]
gi|256003627|ref|ZP_05428616.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
2360]
gi|281416646|ref|ZP_06247666.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20]
gi|385778075|ref|YP_005687240.1| RNA methylase [Clostridium thermocellum DSM 1313]
gi|419723872|ref|ZP_14250976.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum AD2]
gi|419724779|ref|ZP_14251837.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum YS]
gi|125715863|gb|ABN54355.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum ATCC
27405]
gi|255992418|gb|EEU02511.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
2360]
gi|281408048|gb|EFB38306.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20]
gi|316939755|gb|ADU73789.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
1313]
gi|380771818|gb|EIC05680.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum YS]
gi|380780107|gb|EIC09801.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum AD2]
Length = 456
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
FL++ + R +R NTLK + + L+PI W+K G YN G
Sbjct: 22 EFLKSYDMPRFYGLRVNTLKIGVEEFKKL---SPFELEPI-PWTKDGFY-YNEGENPGKH 76
Query: 62 PEYLGGHYILQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVS 105
P Y G Y +Q S +CA P AA MK G+L AND+S
Sbjct: 77 PYYHAGLYYIQEPSAMLPGAVINAEEGDYVLDLCAAPGGKTVQMAAGMKGKGLLIANDIS 136
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
+R KA+V N G+ N++VT
Sbjct: 137 SDRVKALVKNIELCGITNAIVT 158
>gi|116753601|ref|YP_842719.1| NOL1/NOP2/sun family RNA methylase [Methanosaeta thermophila PT]
gi|116665052|gb|ABK14079.1| ribosomal RNA methyltransferase NOP2 [Methanosaeta thermophila PT]
Length = 302
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+FL+ P+TIR NTLKT +L L G+ + + +W +GL + ++ P G
Sbjct: 18 AFLDFMSRPLPVTIRINTLKTSVPELLSRLDRLGIGYERM-RWYPLGLRL-DAEKP-GRL 74
Query: 62 PEYLGGHYILQ---------------GASKYWICA-PHRAAKLAAALMKNTGVLFANDVS 105
E+ G +Q G +CA P A + M N G++ AND S
Sbjct: 75 MEFHMGLIHVQEELSMLPPVVLDPQPGERILDLCAAPGGKAAQISMQMSNKGLVVANDSS 134
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVN 145
R + N RLG +N VVT DGR++ + + A+V+
Sbjct: 135 SARIVPLRANLERLGAVNVVVTSYDGRRFPQYNFDRALVD 174
>gi|229581588|ref|YP_002839987.1| RNA methylase [Sulfolobus islandicus Y.N.15.51]
gi|228012304|gb|ACP48065.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.N.15.51]
Length = 339
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP---IGATPEYLGGHYI 70
+IR NTL+T + L + + +G L+ + KW + G +I T P +G+T EYL G+Y
Sbjct: 65 SIRCNTLRTDCKKLEEMMSEKGFILEKV-KWLQHGYII-KRTPPMPSLGSTLEYLMGYYH 122
Query: 71 LQGASKY---WICAPHR---AAKLAAA----------LMKNTGVLFANDVSKERSKAIVG 114
+QG + ++ P + +AAA +M+N G++ A + + R +A++
Sbjct: 123 IQGLASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLS 182
Query: 115 NFHRLGVINSVVTCLD 130
N +RLG N V+ D
Sbjct: 183 NVNRLGAENVVLVKTD 198
>gi|295695128|ref|YP_003588366.1| Fmu (Sun) domain-containing protein [Kyrpidia tusciae DSM 2912]
gi|295410730|gb|ADG05222.1| Fmu (Sun) domain protein [Kyrpidia tusciae DSM 2912]
Length = 491
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 30/162 (18%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
F EA R +R NTL+ R LA + +L P+ W+ G + ++ P G
Sbjct: 26 DFFEALRQPRSRGLRVNTLRARPDALA---IRSPFSLSPV-PWAPEGFLYHHPDRP-GLH 80
Query: 62 PEYLGGHYILQGASKY------------WI----CAPHRAAKLAAALMKNTGVLFANDVS 105
P Y G Y +Q + W+ AP + AA M+N G+L AN+ +
Sbjct: 81 PWYDAGVYYIQEPAAMAAAVLLAPQPGEWVLDLAAAPGGKSSHLAARMENRGLLVANEPN 140
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYA 147
R + + N RLGV N+++T E+ EA++ +A
Sbjct: 141 PRRCRVLAQNLERLGVTNALITQ---------EQPEALLRFA 173
>gi|227828150|ref|YP_002829930.1| RNA methylase [Sulfolobus islandicus M.14.25]
gi|229585379|ref|YP_002843881.1| RNA methylase [Sulfolobus islandicus M.16.27]
gi|238620340|ref|YP_002915166.1| RNA methylase [Sulfolobus islandicus M.16.4]
gi|385773820|ref|YP_005646387.1| RNA methylase [Sulfolobus islandicus HVE10/4]
gi|385776455|ref|YP_005649023.1| RNA methylase [Sulfolobus islandicus REY15A]
gi|227459946|gb|ACP38632.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25]
gi|228020429|gb|ACP55836.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27]
gi|238381410|gb|ACR42498.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4]
gi|323475203|gb|ADX85809.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus REY15A]
gi|323477935|gb|ADX83173.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus HVE10/4]
Length = 339
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP---IGATPEYLGGHYI 70
+IR NTL+T + L + + +G L+ + KW + G +I T P +G+T EYL G+Y
Sbjct: 65 SIRCNTLRTDCKKLEEMMSEKGFILEKV-KWLQHGYII-KRTPPKPSLGSTLEYLMGYYH 122
Query: 71 LQGASKY---WICAPHR---AAKLAAA----------LMKNTGVLFANDVSKERSKAIVG 114
+QG + ++ P + +AAA +M+N G++ A + + R +A++
Sbjct: 123 IQGLASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLS 182
Query: 115 NFHRLGVINSVVTCLD 130
N +RLG N V+ D
Sbjct: 183 NVNRLGAENVVLVKTD 198
>gi|227830857|ref|YP_002832637.1| RNA methylase [Sulfolobus islandicus L.S.2.15]
gi|229579743|ref|YP_002838142.1| RNA methylase [Sulfolobus islandicus Y.G.57.14]
gi|284998364|ref|YP_003420132.1| RNA methylase [Sulfolobus islandicus L.D.8.5]
gi|227457305|gb|ACP35992.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.S.2.15]
gi|228010458|gb|ACP46220.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.G.57.14]
gi|284446260|gb|ADB87762.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.D.8.5]
Length = 339
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVP---IGATPEYLGGHYI 70
+IR NTL+T + L + + +G L+ + KW + G +I T P +G+T EYL G+Y
Sbjct: 65 SIRCNTLRTDCKKLEEMMSEKGFILEKV-KWLQHGYII-KRTPPKPSLGSTLEYLMGYYH 122
Query: 71 LQGASKY---WICAPHR---AAKLAAA----------LMKNTGVLFANDVSKERSKAIVG 114
+QG + ++ P + +AAA +M+N G++ A + + R +A++
Sbjct: 123 IQGLASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLS 182
Query: 115 NFHRLGVINSVVTCLD 130
N +RLG N V+ D
Sbjct: 183 NVNRLGAENVVLVKTD 198
>gi|374297158|ref|YP_005047349.1| NOL1/NOP2/sun family putative RNA methylase [Clostridium
clariflavum DSM 19732]
gi|359826652|gb|AEV69425.1| NOL1/NOP2/sun family putative RNA methylase [Clostridium
clariflavum DSM 19732]
Length = 456
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
F+++ E R +R N+LK D + L+PI W+ G P G P
Sbjct: 22 FVKSYELPRYYGLRVNSLKVSVEDFLKI---SPFELEPIA-WTNDGFYYREGENP-GKHP 76
Query: 63 EYLGGHYILQ---------------GASKYWICA-PHRAAKLAAALMKNTGVLFANDVSK 106
Y G Y +Q G + +CA P AA MK G+L AND++
Sbjct: 77 YYYAGLYYIQEPSAMLPGAIIDAKPGENVLDLCAAPGGKTVQMAAAMKGKGLLVANDINS 136
Query: 107 ERSKAIVGNFHRLGVINSVVT 127
ER KA+V N GV N++VT
Sbjct: 137 ERVKALVKNIELCGVSNAIVT 157
>gi|448576136|ref|ZP_21642179.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
gi|445729816|gb|ELZ81410.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
Length = 313
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 17/148 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA E P +R NT+KT +AL + GV +P W G++ + P
Sbjct: 16 AFFEACERPLPSVVRVNTIKTTVARAREALDDEGVAYEPT-DWHP-GILKLEDSSPGTNW 73
Query: 62 PEYLGGHY-------------ILQGASKYW--ICAPHRAAKLAAALMKNTGVLFANDVSK 106
P + G + Q K W AP AA+M + GVL ND +
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGEKVWDTCAAPGSKTTQIAAMMDDQGVLVGNDNNL 133
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQY 134
R A+ N RLGV N VT D R +
Sbjct: 134 GRLSALRHNAERLGVTNLAVTNQDARNF 161
>gi|448591436|ref|ZP_21650924.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
gi|445733410|gb|ELZ84979.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
Length = 313
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 17/148 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F EA E P +R NT+KT +AL + GV +P W G++ + P
Sbjct: 16 AFFEACERPLPSVVRVNTIKTTVARAREALDDEGVAYEPT-DWHP-GILKLEDSSPGTNW 73
Query: 62 PEYLGGHY-------------ILQGASKYW--ICAPHRAAKLAAALMKNTGVLFANDVSK 106
P + G + Q K W AP AA+M + GVL ND +
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGEKVWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQY 134
R A+ N RLGV N VT D R +
Sbjct: 134 GRLSALRHNAERLGVTNLAVTNQDARNF 161
>gi|431932083|ref|YP_007245129.1| tRNA/rRNA cytosine-C5-methylase [Thioflavicoccus mobilis 8321]
gi|431830386|gb|AGA91499.1| tRNA/rRNA cytosine-C5-methylase [Thioflavicoccus mobilis 8321]
Length = 490
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 36/158 (22%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGK-----------------W 44
+F EA +P + N + LA L G+ +P+ W
Sbjct: 28 AFCEAIARPQPTCLWANPARITSGALADLLAEEGLAAEPLAWRPDSLRLVPGVRSGRFWW 87
Query: 45 SKVGLVIYN---STVPI---GATPEYLGGHYILQGASKYWICAPH--RAAKLAAALMKNT 96
GL S +P+ A P GH +L +CA + A++A AL N
Sbjct: 88 YCAGLAHAQEEASQLPVTLLSAAP----GHRVLD------LCAAPGGKTAQIACAL-GNR 136
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
G L AND + ER KA+VGN RLG++N+ VT +DG +
Sbjct: 137 GTLVANDFAAERIKALVGNLDRLGIVNTTVTRVDGSNF 174
>gi|302347987|ref|YP_003815625.1| RNA (cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
gi|302328399|gb|ADL18594.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
Length = 335
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
LEA+E P T+R N K +L L G L+ + + G + +S + GAT
Sbjct: 52 LLEANEVPMPETLRCNDFKISCGELESRLGEAGFELERV-PFLPHGYHVISSPISPGATH 110
Query: 63 EYLGGHYILQGASKY---WICAPHRAA---KLAAA----------LMKNTGVLFANDVSK 106
EYL G+Y LQ ++ P +A +AAA L +++ +L A + +
Sbjct: 111 EYLKGYYYLQDPGSMLIVYVMNPRPSATILDMAAAPGGKSTQILQLTRDSSLLIAVEPKR 170
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGR 132
ER KA+ N R+G N ++ D R
Sbjct: 171 ERIKALRSNLQRMGFSNYILIRSDAR 196
>gi|148686367|gb|EDL18314.1| mCG51552 [Mus musculus]
Length = 78
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 26 DLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASK 76
DLAQ+L+NRG+NLD + K +K GL I PEYL GHY+LQG S
Sbjct: 1 DLAQSLINRGINLDQLSKLAKTGLYFM-----ILQCPEYLVGHYMLQGTSS 46
>gi|254168829|ref|ZP_04875670.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
gi|197622266|gb|EDY34840.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
Length = 301
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+E+ + +P +R NTLK R +L + L N+G L+ + ++ P GAT
Sbjct: 21 AFMESLDKPQPYWMRVNTLKIREEELIERLENKGFKLEKYKNLNAYRIIDMPVKHP-GAT 79
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
E+ G+Y +Q S AP + A LM+ G + AND++
Sbjct: 80 IEHSLGYYYIQDLSSMAPVLALNPQRGEKILDMAAAPGSKTTMIAELMRE-GTIVANDIN 138
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQ 133
R K++ GN RLG+ N ++T D ++
Sbjct: 139 FNRLKSLGGNLERLGITNVIITKKDAKK 166
>gi|408404001|ref|YP_006861984.1| NOL1/NOP2/sun family putative RNA methylase [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408364597|gb|AFU58327.1| putative NOL1/NOP2/sun family putative RNA methylase [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 318
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 10 QRPLT--IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPI--GATPEYL 65
+RP T IR NTLK R +L L ++G L K + + V+ P+ GAT EYL
Sbjct: 43 ERPPTQYIRVNTLKIGRDELEARLRSKGFEL----KRTVIPEVLAVEKAPMATGATNEYL 98
Query: 66 GGHYILQGASKYWI----------------CAPHRAAKLAAALMKNTGVLFANDVSKERS 109
GHY +Q S AP A M+NTG + A + + R+
Sbjct: 99 LGHYYIQDLSSCMAVDALDVSKDQIVLDIAAAPGGKTTFMAQRMENTGSIVALEPNDRRA 158
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
+A+ N R GV N+ + +DG + K
Sbjct: 159 RAMSFNLARCGVYNTCILRMDGLEVEK 185
>gi|88859583|ref|ZP_01134223.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2]
gi|88818600|gb|EAR28415.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2]
Length = 527
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY----NSTVPIGA 60
+ Q PL +R NTLK D N + P+ W + G + IG
Sbjct: 78 TSCQSPLRPALRVNTLKMSVADFKTYAANHDWQITPV-PWCEEGFWYQRPQAQQNLSIGN 136
Query: 61 TPEYLGGHYILQGASKY-------------------WICAPHRAAKLAAALMKNTGVLFA 101
T +L G +Q AS AP AA MKNTGVL A
Sbjct: 137 TDIHLSGAIYIQEASSMLPVFALQHQNDLTDCILLDMAAAPGSKTSQIAAQMKNTGVLVA 196
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
N+ S R K++ N RLG+ N ++ D +G
Sbjct: 197 NEFSSSRLKSLSANMQRLGIANVALSHFDAAVFG 230
>gi|213585491|ref|ZP_03367317.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 408
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 20/110 (18%)
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 12 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 71
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 72 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 121
>gi|416745563|ref|ZP_11857449.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323257734|gb|EGA41417.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
Length = 406
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 54 STVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKN 95
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 9 DALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN 68
Query: 96 TGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 69 RGAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 119
>gi|374711369|ref|ZP_09715803.1| RNA methylase [Sporolactobacillus inulinus CASD]
Length = 458
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F E R L +R N LK L +AL G +L PI + G P G
Sbjct: 23 TFFATYEQDRALGLRVNPLKIEPEQL-RAL--SGFHLQPI-PFCSNGFYYQEEDAP-GKH 77
Query: 62 PEYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDVS 105
P + G Y +Q S ++ AP + AA MKN+G+L AN+
Sbjct: 78 PYHQAGLYYIQEPSAMFVADTLAPQPGERVLDLCAAPGGKSTQLAARMKNSGLLIANEPY 137
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
+R+KA+ N R+G+ N+VVT
Sbjct: 138 PKRAKALSENIERMGITNAVVT 159
>gi|14520839|ref|NP_126314.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|74581685|sp|Q9V106.1|TRCM_PYRAB RecName: Full=tRNA (cytosine(49)-C(5))-methyltransferase
gi|5458055|emb|CAB49545.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380741383|tpe|CCE70017.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 311
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 11 RPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSK-VGLVIYNSTVPIGATPEYLGGHY 69
RP +IR NTLK +++ +AL+ L+PI W+K G I + V G EY G
Sbjct: 36 RP-SIRINTLKGNLKEI-KALLEEKFELEPIP-WTKGEGFYIKSYDVNYGQLIEYSLGLI 92
Query: 70 ILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
I Q AS AP A M+N G + AND ++R+ ++
Sbjct: 93 IPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILI 152
Query: 114 GNFHRLGVINSVVTCLDGRQYGKPE 138
N R GV+ + VT DG + + E
Sbjct: 153 ANLTRAGVLIAKVTVKDGAYFARYE 177
>gi|327401876|ref|YP_004342715.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6]
gi|327317384|gb|AEA48000.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6]
Length = 308
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 7 SETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYL 65
S+ RP +IR NTLK D+ +L++ ++P+ W + G I + IG + E+
Sbjct: 29 SKPLRP-SIRVNTLKGSLEDIV-SLLSEKYKIEPV-PWCREGFFIDIDEDSSIGTSIEHQ 85
Query: 66 GGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERS 109
G Q AS AP A M+N G + ANDV R
Sbjct: 86 LGLIFSQEASSMIPPVVLDVKPGMLVLDMAAAPGAKTTQIAQYMQNEGCIIANDVKVGRL 145
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGKPE 138
++ N R GV+ + VT +DGR + K E
Sbjct: 146 NILISNLQRCGVLIARVTMMDGRSFRKYE 174
>gi|375083393|ref|ZP_09730416.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
gi|374741903|gb|EHR78318.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
Length = 304
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 14 TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQG 73
+IR NTLK + +A + L+PI W K G I +T G EY G Q
Sbjct: 35 SIRINTLKAPL-EYVKARLEERYELEPIP-WVKEGFFI--NTREFGDMIEYALGLVFPQE 90
Query: 74 ASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFH 117
AS AP A MKN G + AND+ K R+ ++ N +
Sbjct: 91 ASSMIPPVVLDPKPRELVLDMAAAPGAKTTQIAQYMKNEGCIIANDLKKWRANVLIANLN 150
Query: 118 RLGVINSVVTCLDGRQYGKPE 138
R GV+N+ VT DG + + E
Sbjct: 151 RFGVLNARVTVKDGIYFSRFE 171
>gi|347522764|ref|YP_004780334.1| NOL1/NOP2/sun family RNA methylase [Pyrolobus fumarii 1A]
gi|343459646|gb|AEM38082.1| RNA methylase, NOL1/NOP2/sun family [Pyrolobus fumarii 1A]
Length = 347
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTL+T + + + L N+G L+ W L++ + +GAT EY+ G Y QGA
Sbjct: 71 IRVNTLRTSKDVVREVLENKGFVLE--DYWIPYTLIVIEEPLSVGATHEYMQGLYYNQGA 128
Query: 75 SK---YWICAP---HRAAKLAAA----------LMKNTGVLFANDVSKERSKAIVGNFHR 118
+I P LAAA ++T + A D+S R ++ N +R
Sbjct: 129 GSQVPVYITDPKPLQHVIDLAAAPGGKATQIAQHQRDTTPIIALDISPRRLASLKNNANR 188
Query: 119 LGVINSVVTCLDGRQ 133
LGV + V +D R+
Sbjct: 189 LGVKSIVALLMDARE 203
>gi|366164626|ref|ZP_09464381.1| NOL1/NOP2/sun family RNA methylase [Acetivibrio cellulolyticus CD2]
Length = 457
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
F+++ + R +R NTLK + + L+PI W+K G YN G
Sbjct: 22 DFIKSYDLPRFYGLRVNTLKISVEEFLKI---SPFKLEPI-PWTKDGFY-YNEGENPGKH 76
Query: 62 PEYLGGHYILQ---------------GASKYWICA-PHRAAKLAAALMKNTGVLFANDVS 105
P Y G Y +Q G + +CA P AA MK G+L AND++
Sbjct: 77 PYYYAGLYYIQEPSAMLPGAVIDAKPGENILDLCAAPGGKTVQIAAGMKGKGLLVANDIN 136
Query: 106 KERSKAIVGNFHRLGVINSVVT 127
+R KA+V N G+ N+VVT
Sbjct: 137 SDRVKALVKNIELCGITNAVVT 158
>gi|256544908|ref|ZP_05472279.1| sun protein [Anaerococcus vaginalis ATCC 51170]
gi|256399407|gb|EEU13013.1| sun protein [Anaerococcus vaginalis ATCC 51170]
Length = 426
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
FL++ +R L+IR N K R L L ++G ++ S + LVI N + +T
Sbjct: 163 FLDSLNKERKLSIRINKTKITREKLKNLLEDKGYIVED-SLISTLSLVIKNPK-SLASTE 220
Query: 63 EYLGGHYILQGASKYWIC----------------APHRAAKLAAALMKNTGVLFANDVSK 106
E+ G + +Q + +C AP A L +N+ + AND+S
Sbjct: 221 EFKKGFFTIQSEASIKVCEILNPKKNSNILDICAAPGTKTSFIAELCENSSKIIANDISF 280
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDG 131
+ I N RLG+ N +T D
Sbjct: 281 NKLSKINENIKRLGLKNIEITNFDA 305
>gi|332157765|ref|YP_004423044.1| hypothetical protein PNA2_0122 [Pyrococcus sp. NA2]
gi|331033228|gb|AEC51040.1| nucleolar protein [Pyrococcus sp. NA2]
Length = 311
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 20/145 (13%)
Query: 11 RPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSK-VGLVIYNSTVPIGATPEYLGGHY 69
RP +IR NTLK +D+ ++L+ L+ I W+K G I + V G EY G
Sbjct: 36 RP-SIRINTLKGNLKDI-KSLLEEKFELERI-PWTKGEGFYINSYDVNFGELIEYSLGLI 92
Query: 70 ILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
I Q AS AP A M+N G + AND ++R+ ++
Sbjct: 93 IPQEASSMIPPVVLDPKPGELVLDMAAAPGSKTTQIAQYMENEGCIIANDAKRDRANILI 152
Query: 114 GNFHRLGVINSVVTCLDGRQYGKPE 138
N R GV+ + VT DG Y K E
Sbjct: 153 ANLTRAGVLIAKVTVKDGAYYAKYE 177
>gi|419884307|ref|ZP_14405283.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Escherichia
coli O111:H11 str. CVM9545]
gi|388355486|gb|EIL20317.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF, partial [Escherichia
coli O111:H11 str. CVM9545]
Length = 164
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 26/136 (19%)
Query: 3 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 57
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 31 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 87
Query: 58 IGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGVL 99
+G+T E+L G + +Q AS A P R +AAA M N G +
Sbjct: 88 LGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGAI 147
Query: 100 FANDVSKERSKAIVGN 115
AN+ S R K + N
Sbjct: 148 LANEFSASRVKVLHAN 163
>gi|254168748|ref|ZP_04875590.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
gi|289596783|ref|YP_003483479.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469]
gi|197622374|gb|EDY34947.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
gi|289534570|gb|ADD08917.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469]
Length = 301
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+F+E+ + +P +R NTLK R +L + L N+G L+ + ++ P GAT
Sbjct: 21 AFMESLDKPQPYWMRVNTLKIREEELIERLENKGFKLEKYKNLNAYRIIDMPVKHP-GAT 79
Query: 62 PEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVS 105
E+ G+Y +Q S AP + A LM+ G + AND++
Sbjct: 80 IEHSLGYYYIQDLSSMAPVLALNPQRGEKILDMAAAPGSKTTMLAELMRE-GTIVANDIN 138
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQ 133
R K++ GN RLG+ N ++T D ++
Sbjct: 139 FNRLKSLGGNLERLGITNVLITKKDAKK 166
>gi|119472303|ref|ZP_01614463.1| predicted methyltransferase [Alteromonadales bacterium TW-7]
gi|119445025|gb|EAW26321.1| predicted methyltransferase [Alteromonadales bacterium TW-7]
Length = 479
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 64/151 (42%), Gaps = 26/151 (17%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST-----VPIGATP 62
+RPL +IR NTLK D + + L PI W G + + + +G T
Sbjct: 33 RRPLRKSIRVNTLKITVEDFIKKAEQKNWQLTPI-PWCSEGFWLERPSNEEQNLALGNTD 91
Query: 63 EYLGGHYILQGAS--------KYWICAPHRAAKLA----------AALMKNTGVLFANDV 104
+L G +Q AS K I H +A AALM N GVL AN++
Sbjct: 92 LHLSGAMYVQEASSMLPPIALKQSIQTSHTVLDMASAPGSKTSQLAALMNNQGVLVANEL 151
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
S R K + R+GV N ++ DG +G
Sbjct: 152 SSSRLKVLSATLKRMGVGNCALSHFDGVIFG 182
>gi|119945884|ref|YP_943564.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Psychromonas
ingrahamii 37]
gi|146325697|sp|A1SWV0.1|RSMF_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
gi|119864488|gb|ABM03965.1| 16S rRNA m(5)C-1407 methyltransferase [Psychromonas ingrahamii 37]
Length = 481
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNSTVPIGATPEYL 65
QRPL IR NTLK +G L I W G I P+G + E+L
Sbjct: 33 QRPLRRAIRVNTLKISVEKFQIRAQEQGWVLTAI-PWCAEGFWIELQEEPTPLGNSAEHL 91
Query: 66 GGHYILQGASKYW--------------------ICAPHRAAKLAAALMKNTGVLFANDVS 105
GG +Q AS AP AA M N+G++ N+ S
Sbjct: 92 GGLCYIQEASSMLPVAALFHFFTPTTQSIVLDAAAAPGSKTTQIAAKMNNSGLIIGNEFS 151
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K + N R G+ N +T D R +GK
Sbjct: 152 SSRIKMLHANIQRCGIKNVALTHFDARVFGK 182
>gi|389847107|ref|YP_006349346.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|448614944|ref|ZP_21663972.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|388244413|gb|AFK19359.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|445753031|gb|EMA04450.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
Length = 313
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
+FL A E P +R NT+KT +AL + GV +P W G++ + P
Sbjct: 16 AFLAACERPLPSVVRVNTIKTTVERAREALDDEGVAYEPT-DWHP-GILKLEESSPGTNW 73
Query: 62 PEYLGGHY-------------ILQGASKYW--ICAPHRAAKLAAALMKNTGVLFANDVSK 106
P + G + Q + W AP AA+M + GVL ND +
Sbjct: 74 PYFHGWLHGQEEVSALPAIALDPQPGERIWDTCAAPGSKTTQIAAMMDDEGVLVGNDNNL 133
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQY 134
R A+ N RLGV N VV+ D R +
Sbjct: 134 GRLSALRHNAERLGVTNLVVSNQDARNF 161
>gi|284161697|ref|YP_003400320.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284011694|gb|ADB57647.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
5631]
Length = 305
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 11 RPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYI 70
RP + R NTLK D+ +L +R L+PI W K G + S +G T E+ G
Sbjct: 34 RP-SFRVNTLKASVEDVVSSLSDR-FKLEPI-PWCKEG---FFSDKEVGRTIEHQIGVIF 87
Query: 71 LQGASKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVG 114
Q AS +CA P A MKN G + ANDV +R ++
Sbjct: 88 SQEASSMIPAIVLDPKPNMLVLDMCASPGGKTTQIAQYMKNEGCIVANDVKYDRINILIS 147
Query: 115 NFHRLGVINSVVTCLDGRQYGK 136
N R GV + VT DGR + +
Sbjct: 148 NLQRCGVTIARVTMKDGRFFKR 169
>gi|374635946|ref|ZP_09707533.1| RNA methylase, NOL1/NOP2/sun family [Methanotorris formicicus
Mc-S-70]
gi|373560689|gb|EHP86945.1| RNA methylase, NOL1/NOP2/sun family [Methanotorris formicicus
Mc-S-70]
Length = 264
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L L N+GV L + + S IGATPEYL G+Y +Q
Sbjct: 6 IRVNTLKINPETLKNRLENKGVVLKE--TFLPYAFEVLKSPFSIGATPEYLFGYYFVQSI 63
Query: 75 SKYW---------------IC-APHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +C AP + LM N GV+ + ++ R K++ N +R
Sbjct: 64 SSMIPPIVLNPSKDDLVLDMCAAPGGKTTHLSQLMGNEGVIVSVEIKSSRMKSLKANINR 123
Query: 119 LGVINSVV 126
+ + N ++
Sbjct: 124 MDIANVIM 131
>gi|359450573|ref|ZP_09240004.1| 16S rRNA (cytosine1407-C5)-methyltransferase [Pseudoalteromonas sp.
BSi20480]
gi|358043547|dbj|GAA76253.1| 16S rRNA (cytosine1407-C5)-methyltransferase [Pseudoalteromonas sp.
BSi20480]
Length = 479
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST-----VPIGATP 62
+RPL +IR NTLK D + + L PI W G + + + +G T
Sbjct: 33 RRPLRKSIRVNTLKITVEDFIKKAEQKNWQLTPI-PWCSEGFWLERPSNEEQNLALGNTD 91
Query: 63 EYLGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDV 104
+L G +Q AS AP AALM N GVL AN++
Sbjct: 92 LHLSGAMYVQEASSMLPPIALKQSIQTSSTVLDMASAPGSKTSQLAALMNNQGVLVANEL 151
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
S R K + R+GV N ++ DG +G
Sbjct: 152 SSSRLKVLSATLKRMGVGNCALSHFDGVIFG 182
>gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM
20548]
gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548]
Length = 430
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
FL S + L+IR N LKT + +L + L +G ++ + K S+ L++ N + + AT
Sbjct: 162 DFLRYSNNEAVLSIRINRLKTDKDNLIKKLKAKGFEIE-VSKISENALLVKNPS-GLVAT 219
Query: 62 PEYLGGHYILQGASKY---WICAPHRAAKLA-------------AALMKNTGVLFANDVS 105
E+ G + +Q + + P + +K+ A +N+G + AND+S
Sbjct: 220 SEFKEGLFTIQQEASMKTVEVLDPQKDSKILDLCAAPGTKTSYLAEYTRNSGKIIANDIS 279
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQY 134
K + I N RLG+ N + D Y
Sbjct: 280 KNKLNLIRENIERLGLSNIELDSFDASVY 308
>gi|392537549|ref|ZP_10284686.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas
marina mano4]
Length = 479
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 10 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST-----VPIGATP 62
+RPL +IR NTLK D + + L PI W G + + + +G T
Sbjct: 33 RRPLRKSIRVNTLKITVEDFIKKAEQKNWQLTPI-PWCNEGFWLERPSNEEQNLALGNTD 91
Query: 63 EYLGGHYILQGASKY------------------WICAPHRAAKLAAALMKNTGVLFANDV 104
+L G +Q AS AP AALM N GVL AN++
Sbjct: 92 LHLSGAMYVQEASSMLPPIALKQSIQTSNTVLDMASAPGSKTSQLAALMNNQGVLVANEL 151
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135
S R K + R+GV N ++ DG +G
Sbjct: 152 SSSRLKVLSATLKRMGVGNCALSHFDGVIFG 182
>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 450
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNR-GVNLDPIGKWSKVGLVIYNSTVPIG 59
++ LEA+ + PLTIR NTLK +LA+ L + V ++P G++ L I +PIG
Sbjct: 173 VALLEANNRRPPLTIRVNTLKVDPEELAERLQRKYRVTVEP-GRFLDEILKIPEG-LPIG 230
Query: 60 ATPEYLGGHYILQ---------------GASKYWIC-APHRAAKLAAALMKNTGVLFAND 103
PE+ G +++Q G +C AP A LM G + A D
Sbjct: 231 EMPEWEEGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIVAID 290
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCL-DGRQ 133
V + R + + R+GV++ + T L DGR+
Sbjct: 291 VDEVRMERLREIAERMGVLDCIETHLMDGRE 321
>gi|14591319|ref|NP_143397.1| hypothetical protein PH1537 [Pyrococcus horikoshii OT3]
gi|3257964|dbj|BAA30647.1| 312aa long hypothetical nucleolar protein [Pyrococcus horikoshii
OT3]
Length = 312
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Query: 11 RPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSK-VGLVIYNSTVPIGATPEYLGGHY 69
RP +IR NTLK + ++ + L+ L+ I W+K G I + +V G EY G
Sbjct: 36 RP-SIRINTLKGKLNEIKK-LLEEKFELERIP-WTKGEGFYINSYSVNYGELIEYSLGLI 92
Query: 70 ILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIV 113
I Q AS AP A M+N G + AND ++R+ ++
Sbjct: 93 IPQEASSMIPPVVLDPKPGELILDMAAAPGSKTTQIAQYMENDGCIIANDAKRDRANILI 152
Query: 114 GNFHRLGVINSVVTCLDGRQYGKPEE 139
N R GV+ + VT DG Y K E+
Sbjct: 153 ANLTRAGVLIAKVTVRDGAHYAKYED 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,949,261,571
Number of Sequences: 23463169
Number of extensions: 120719627
Number of successful extensions: 258309
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 527
Number of HSP's that attempted gapping in prelim test: 254486
Number of HSP's gapped (non-prelim): 3028
length of query: 189
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 55
effective length of database: 9,215,130,721
effective search space: 506832189655
effective search space used: 506832189655
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)