BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11559
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 192 bits (489), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 298 VEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGA 357
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 358 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDA 417
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ ER K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 418 NAERLKSVVGNLHRLGVTNTIISHYDGRQFPK 449
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF +R+ + + P ++
Sbjct: 522 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERR-FHPSLR 564
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ FLEA+E RP+T+RTNTLKTRRRDLAQ L+NRGVNLDP+GKWSK GLV+Y+S+VPIGA
Sbjct: 283 IEFLEANEVPRPITLRTNTLKTRRRDLAQLLINRGVNLDPLGKWSKSGLVVYDSSVPIGA 342
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHY+LQGAS CAP A LMKNTGV+ AND
Sbjct: 343 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 402
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+ +R K++VGN HRLGV N++++ DGRQ+ K
Sbjct: 403 NADRLKSVVGNLHRLGVTNTIISHYDGRQFPK 434
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 138 EENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EENE VV+YAL+KR+V+LVPTGLDFG EGF + Q + + P ++
Sbjct: 507 EENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF-QARRFHPTLR 549
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 176 bits (447), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 16/152 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
M F EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGA
Sbjct: 259 MEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGA 318
Query: 61 TPEYLGGHYILQGASKYW---ICAPH---RAAKLAA----------ALMKNTGVLFANDV 104
TPEYL GHYILQ AS + PH R +AA A+MKNTG +FAND
Sbjct: 319 TPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDA 378
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+K R+K+++ N HRLG N++V D R++ K
Sbjct: 379 NKSRTKSLIANIHRLGCTNTIVCNYDAREFPK 410
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
EE+EAV++YALRKR +VKLV TGL G E F +YR K + P ++
Sbjct: 483 EEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYR-GKKFHPSVK 526
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 104/150 (69%), Gaps = 16/150 (10%)
Query: 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 60
+ F EA+E RP+TIRTNTLKT+RR+LAQAL+NRGVNL+PIGKWSKVGL ++ S VPIGA
Sbjct: 253 VEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQVPIGA 312
Query: 61 TPEYLGGHYILQGASKY----------------WICAPHRAAKLAAALMKNTGVLFANDV 104
TPEYL GHYILQ AS + AP AAL KNTG++FAND
Sbjct: 313 TPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDS 372
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQY 134
+K R+KA+ N HRLGV N++V DGR++
Sbjct: 373 NKARTKALSANIHRLGVRNAIVCNYDGRKF 402
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 138 EENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQNKSYRPEMQ 181
+E+EAV+ YAL+KR +VKLV TGL+FG EGF +R+ K + P ++
Sbjct: 478 DEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRFRE-KRFHPSLK 521
>sp|Q87PA5|RSMF_VIBPA Ribosomal RNA small subunit methyltransferase F OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmF PE=3 SV=1
Length = 478
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
S QRPL +IR NTLK D + ++G L P+ W G I S VP+G T
Sbjct: 30 SACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPV-PWCDNGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALMKN GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---V 56
FL A QRPL +IR NTLKT D Q G L PI W + G I + +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNKGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YN-STV 56
FL A QRPL +IR NTLK D Q G L PI W + G I YN +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B5F3P3|RSMF_SALA4 Ribosomal RNA small subunit methyltransferase F OS=Salmonella agona
(strain SL483) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B5BHA6|RSMF_SALPK Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|Q5PHN5|RSMF_SALPA Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmF PE=3
SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B4TKI0|RSMF_SALHS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
heidelberg (strain SL476) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B5R8V2|RSMF_SALG2 Ribosomal RNA small subunit methyltransferase F OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmF PE=3
SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B5R2S1|RSMF_SALEP Ribosomal RNA small subunit methyltransferase F OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B5FTI4|RSMF_SALDC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
dublin (strain CT_02021853) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GTILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GTILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSFLE-ASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NS 54
+SF E S QRPL +IR NTLK D + G +L PI W G I
Sbjct: 24 LSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEE 82
Query: 55 TVPIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNT 96
+P+G+T E+L G + +Q AS A P R +AAA M N
Sbjct: 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNR 142
Query: 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
G + AN+ S R K + N R G+ N+ +T DGR +G PE +A++
Sbjct: 143 GAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAIL 192
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 192
>sp|B7VNJ8|RSMF_VIBSL Ribosomal RNA small subunit methyltransferase F OS=Vibrio
splendidus (strain LGP32) GN=rsmF PE=3 SV=1
Length = 473
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK D +G L+P+ W + G I S P+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPV-PWCETGFWITADESEAPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPPSALFQGEADYQAVLDTAAAPGSKTTQIAALMNNRGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 18/136 (13%)
Query: 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA 74
IR NTLK L + L N+GV L+ + + S IG+TPEYL G+Y+ Q
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 75 SKYW---------------ICA-PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR 118
S +CA P A LMKN G + A ++SK R+KA+ N +R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 119 LGVINSVVTCLDGRQY 134
+GV+N+++ D R+Y
Sbjct: 131 MGVLNTIIINADMRKY 146
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLKT D + G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFDAIL 192
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFDAIL 192
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 192
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 2 SFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTV 56
FL A QRPL +IR NTLK D Q G L PI W + G I +
Sbjct: 28 DFLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDAL 84
Query: 57 PIGATPEYLGGHYILQGASKYWICA--------PHRAAKLAAA----------LMKNTGV 98
P+G+T E+L G + +Q AS A P R +AAA M N G
Sbjct: 85 PLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGA 144
Query: 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG--KPEENEAVV 144
+ AN+ S R K + N R G+ N +T DGR +G PE +A++
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAIL 192
>sp|Q0HJM6|RSMF_SHESM Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain MR-4) GN=rsmF PE=3 SV=2
Length = 481
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D Q + +G DPI W + G I Y+ +G E++ G
Sbjct: 31 RPLRRSIRVNTLKISSEDFKQLMQPKGWTFDPI-PWCEDGFWISYDEEEQLGNALEHIQG 89
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 90 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 149
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 150 KVLHANVLRMGASHCALTHFDGRVFGE 176
>sp|A7N0K6|RSMF_VIBHB Ribosomal RNA small subunit methyltransferase F OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=rsmF PE=3 SV=2
Length = 478
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY--NSTVPIGATP 62
+ Q+PL +IR NTLK + +G L P+ W G I S VP+G T
Sbjct: 30 ASCQKPLRKSIRVNTLKISVEAFLERAEAKGWKLSPV-PWCNTGFWIEADESVVPLGNTA 88
Query: 63 EYLGGHYILQGASKYW------------------ICAPHRAAKLAAALMKNTGVLFANDV 104
E++ G + +Q AS AP AALM N GVL AN+
Sbjct: 89 EHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY 148
Query: 105 SKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--PEENEAVV 144
+ R K + N R GV N+ ++ DGR +G PE+ +AV+
Sbjct: 149 AASRVKVLHANIERCGVRNAALSNFDGRVFGGWLPEQFDAVL 190
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 7 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPE 63
S + +PL +IR NTLK +D + +G L+PI W + G I +S V +G T E
Sbjct: 27 SYSSKPLRPSIRINTLKISSQDFIALMAPKGWTLEPI-PWCQDGFWISLDSDVQLGNTVE 85
Query: 64 YLGGHYILQGASKY--------------------WICAPHRAAKLAAALMKNTGVLFAND 103
+L G + +Q AS AP AA+M N+G+L AN+
Sbjct: 86 HLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAPGSKTTQIAAMMDNSGLLIANE 145
Query: 104 VSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
S R K + N R+GV N+ +T D R +G+
Sbjct: 146 YSSSRVKVLHANVLRMGVSNTALTHFDARVFGE 178
>sp|Q0HVX2|RSMF_SHESR Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain MR-7) GN=rsmF PE=3 SV=2
Length = 482
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 11 RPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGG 67
RPL +IR NTLK D Q ++ +G +PI W + G I Y+ +G E++ G
Sbjct: 31 RPLRRSIRVNTLKISSEDFKQLMLPKGWTFEPI-PWCEDGFWISYDEEEQLGNALEHIQG 89
Query: 68 HYILQGASKY------------WIC------APHRAAKLAAALMKNTGVLFANDVSKERS 109
+ +Q AS W C AP AALM N G+L AN+ S R
Sbjct: 90 LFYIQEASSMLPPTALFTPNADWQCVLDLASAPGSKTTQMAALMNNQGLLVANEYSASRV 149
Query: 110 KAIVGNFHRLGVINSVVTCLDGRQYGK 136
K + N R+G + +T DGR +G+
Sbjct: 150 KVLHANVLRMGASHCALTHFDGRVFGE 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,758,976
Number of Sequences: 539616
Number of extensions: 2858813
Number of successful extensions: 6419
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6198
Number of HSP's gapped (non-prelim): 154
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)