Query psy11559
Match_columns 189
No_of_seqs 217 out of 1628
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:34:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 1.5E-39 3.2E-44 272.1 11.7 181 3-184 1-275 (283)
2 PRK11933 yebU rRNA (cytosine-C 100.0 1.5E-38 3.3E-43 281.1 18.3 180 2-183 24-296 (470)
3 KOG1122|consensus 100.0 6.2E-38 1.3E-42 267.7 15.7 183 1-186 155-423 (460)
4 COG0144 Sun tRNA and rRNA cyto 100.0 3.6E-37 7.7E-42 264.9 17.8 179 2-182 73-342 (355)
5 PRK14903 16S rRNA methyltransf 100.0 1.8E-32 3.9E-37 241.2 18.9 177 2-180 153-417 (431)
6 PRK14901 16S rRNA methyltransf 100.0 1.8E-30 4E-35 228.7 17.0 132 2-134 168-315 (434)
7 TIGR00446 nop2p NOL1/NOP2/sun 100.0 3E-29 6.6E-34 208.0 16.4 167 15-183 1-254 (264)
8 TIGR00563 rsmB ribosomal RNA s 100.0 1.2E-28 2.6E-33 216.8 18.8 174 2-184 155-416 (426)
9 PRK14902 16S rRNA methyltransf 100.0 9.9E-28 2.1E-32 211.9 20.0 180 2-184 168-433 (444)
10 PRK10901 16S rRNA methyltransf 100.0 4.2E-27 9.1E-32 207.0 18.6 170 2-183 161-416 (427)
11 PRK14904 16S rRNA methyltransf 99.9 1.6E-25 3.6E-30 197.9 18.8 174 2-181 170-429 (445)
12 KOG2360|consensus 99.9 1.1E-22 2.5E-27 172.7 7.7 178 8-186 127-405 (413)
13 KOG2198|consensus 99.7 1.1E-17 2.4E-22 142.2 9.5 134 2-135 44-222 (375)
14 COG2242 CobL Precorrin-6B meth 98.2 6.9E-06 1.5E-10 64.7 8.1 81 80-161 43-162 (187)
15 PTZ00146 fibrillarin; Provisio 97.4 0.0004 8.7E-09 58.6 6.2 52 80-133 141-192 (293)
16 COG4076 Predicted RNA methylas 97.3 0.00054 1.2E-08 54.3 5.9 77 80-159 41-135 (252)
17 TIGR00080 pimt protein-L-isoas 97.3 0.0011 2.3E-08 53.2 7.3 54 80-133 86-139 (215)
18 PRK13942 protein-L-isoaspartat 97.2 0.0012 2.5E-08 53.1 7.2 54 80-133 85-138 (212)
19 PF08704 GCD14: tRNA methyltra 97.2 0.00099 2.2E-08 55.0 6.1 75 80-162 49-125 (247)
20 PRK00377 cbiT cobalt-precorrin 97.1 0.0015 3.3E-08 51.7 6.5 54 80-133 49-103 (198)
21 PRK04266 fibrillarin; Provisio 96.9 0.0026 5.6E-08 51.8 6.4 51 80-133 81-131 (226)
22 PRK07402 precorrin-6B methylas 96.9 0.0037 8E-08 49.3 6.8 53 80-133 49-101 (196)
23 TIGR02469 CbiT precorrin-6Y C5 96.9 0.0046 1E-07 44.2 6.9 53 80-133 28-80 (124)
24 PRK13944 protein-L-isoaspartat 96.9 0.0047 1E-07 49.2 7.4 54 80-133 81-135 (205)
25 PF09445 Methyltransf_15: RNA 96.9 0.0032 6.9E-08 48.8 6.2 51 80-133 8-59 (163)
26 TIGR02752 MenG_heptapren 2-hep 96.6 0.0073 1.6E-07 48.5 7.0 56 80-135 54-109 (231)
27 PRK00121 trmB tRNA (guanine-N( 96.6 0.0061 1.3E-07 48.5 6.2 51 80-131 49-99 (202)
28 PF01135 PCMT: Protein-L-isoas 96.6 0.0056 1.2E-07 49.3 5.9 54 80-133 81-134 (209)
29 PRK00050 16S rRNA m(4)C1402 me 96.6 0.0095 2.1E-07 50.5 7.4 77 80-168 28-113 (296)
30 PRK13943 protein-L-isoaspartat 96.6 0.008 1.7E-07 51.5 7.0 55 80-134 89-143 (322)
31 PF13847 Methyltransf_31: Meth 96.5 0.012 2.6E-07 44.3 7.2 56 80-135 12-67 (152)
32 PRK08287 cobalt-precorrin-6Y C 96.5 0.02 4.3E-07 44.7 8.4 52 80-132 40-91 (187)
33 TIGR00138 gidB 16S rRNA methyl 96.5 0.0085 1.8E-07 47.0 6.1 54 80-134 51-104 (181)
34 PLN02476 O-methyltransferase 96.4 0.011 2.5E-07 49.6 6.7 54 80-133 127-181 (278)
35 PLN02781 Probable caffeoyl-CoA 96.3 0.014 3E-07 47.6 6.6 54 80-133 77-131 (234)
36 PF01596 Methyltransf_3: O-met 96.2 0.014 2.9E-07 46.9 6.2 53 80-132 54-107 (205)
37 COG4122 Predicted O-methyltran 96.2 0.016 3.6E-07 46.9 6.5 53 80-132 68-122 (219)
38 PRK11873 arsM arsenite S-adeno 96.2 0.019 4.2E-07 47.4 6.9 56 80-135 86-141 (272)
39 PRK00312 pcm protein-L-isoaspa 96.1 0.024 5.1E-07 45.2 7.1 51 80-133 87-137 (212)
40 PF01209 Ubie_methyltran: ubiE 96.1 0.014 3.1E-07 47.6 5.7 57 80-136 56-112 (233)
41 PRK00107 gidB 16S rRNA methylt 96.0 0.024 5.2E-07 44.8 6.7 55 80-135 54-108 (187)
42 COG2226 UbiE Methylase involve 96.0 0.02 4.3E-07 47.1 5.9 56 80-136 60-115 (238)
43 COG2519 GCD14 tRNA(1-methylade 95.9 0.038 8.2E-07 45.7 7.3 72 80-162 103-175 (256)
44 PF02005 TRM: N2,N2-dimethylgu 95.9 0.033 7.1E-07 48.8 7.3 72 80-165 58-133 (377)
45 COG2518 Pcm Protein-L-isoaspar 95.8 0.031 6.8E-07 44.9 6.3 51 80-133 81-131 (209)
46 PRK14121 tRNA (guanine-N(7)-)- 95.5 0.031 6.7E-07 49.1 5.7 54 80-134 131-184 (390)
47 TIGR00308 TRM1 tRNA(guanine-26 95.4 0.078 1.7E-06 46.4 8.1 54 80-133 53-106 (374)
48 TIGR01177 conserved hypothetic 95.4 0.049 1.1E-06 46.6 6.4 53 80-135 191-243 (329)
49 TIGR00091 tRNA (guanine-N(7)-) 95.4 0.046 1E-06 43.1 5.9 53 80-133 25-77 (194)
50 PF12847 Methyltransf_18: Meth 95.3 0.073 1.6E-06 37.4 6.3 51 80-131 10-61 (112)
51 PRK03522 rumB 23S rRNA methylu 94.9 0.056 1.2E-06 46.0 5.4 52 80-134 182-233 (315)
52 PLN02589 caffeoyl-CoA O-methyl 94.9 0.084 1.8E-06 43.6 6.2 54 80-133 88-142 (247)
53 PRK14967 putative methyltransf 94.9 0.088 1.9E-06 42.3 6.3 51 80-133 45-95 (223)
54 COG1867 TRM1 N2,N2-dimethylgua 94.8 0.13 2.7E-06 44.8 7.3 70 80-164 61-132 (380)
55 PF02390 Methyltransf_4: Putat 94.8 0.15 3.2E-06 40.5 7.3 53 80-133 26-78 (195)
56 KOG2730|consensus 94.8 0.081 1.8E-06 43.1 5.7 78 80-170 103-183 (263)
57 PF01269 Fibrillarin: Fibrilla 94.7 0.13 2.9E-06 41.8 6.9 54 80-135 82-135 (229)
58 TIGR03534 RF_mod_PrmC protein- 94.7 0.11 2.4E-06 41.9 6.6 53 80-133 96-148 (251)
59 PF13649 Methyltransf_25: Meth 94.7 0.11 2.4E-06 36.1 5.7 54 80-134 6-61 (101)
60 PF04816 DUF633: Family of unk 94.5 0.16 3.5E-06 40.7 6.8 61 98-158 23-122 (205)
61 PF02475 Met_10: Met-10+ like- 94.3 0.14 3E-06 41.0 6.0 55 80-135 110-165 (200)
62 TIGR00438 rrmJ cell division p 94.1 0.076 1.6E-06 41.4 4.2 42 80-132 41-82 (188)
63 PRK13168 rumA 23S rRNA m(5)U19 94.1 0.15 3.2E-06 45.5 6.4 51 80-133 306-356 (443)
64 COG1889 NOP1 Fibrillarin-like 94.0 0.23 4.9E-06 40.0 6.6 53 80-135 85-137 (231)
65 TIGR00006 S-adenosyl-methyltra 93.9 0.24 5.3E-06 42.1 7.1 77 80-168 29-115 (305)
66 PRK15451 tRNA cmo(5)U34 methyl 93.9 0.24 5.2E-06 40.5 6.9 56 80-135 65-122 (247)
67 COG0220 Predicted S-adenosylme 93.8 0.2 4.4E-06 40.8 6.3 52 80-132 57-108 (227)
68 TIGR03533 L3_gln_methyl protei 93.8 0.22 4.8E-06 41.8 6.6 53 80-133 130-183 (284)
69 PRK11188 rrmJ 23S rRNA methylt 93.7 0.11 2.4E-06 41.6 4.6 43 80-133 60-102 (209)
70 PLN02233 ubiquinone biosynthes 93.7 0.27 5.9E-06 40.6 7.0 56 80-135 82-140 (261)
71 PF08241 Methyltransf_11: Meth 93.5 0.14 3.1E-06 34.2 4.3 51 80-135 5-55 (95)
72 TIGR00479 rumA 23S rRNA (uraci 93.2 0.24 5.2E-06 43.8 6.3 51 80-133 301-351 (431)
73 TIGR00740 methyltransferase, p 93.2 0.37 7.9E-06 39.0 6.9 56 80-135 62-119 (239)
74 PRK15128 23S rRNA m(5)C1962 me 93.1 0.2 4.3E-06 44.2 5.5 52 80-133 229-282 (396)
75 smart00650 rADc Ribosomal RNA 93.1 0.25 5.5E-06 37.8 5.5 66 80-150 22-100 (169)
76 PF13659 Methyltransf_26: Meth 93.1 0.28 6E-06 34.7 5.3 53 80-134 9-62 (117)
77 PF05175 MTS: Methyltransferas 93.0 0.83 1.8E-05 35.1 8.3 53 80-133 40-92 (170)
78 TIGR00536 hemK_fam HemK family 92.9 0.36 7.7E-06 40.4 6.6 53 80-133 123-176 (284)
79 PRK08317 hypothetical protein; 92.6 0.52 1.1E-05 37.2 7.0 54 80-134 28-81 (241)
80 PRK11805 N5-glutamine S-adenos 92.6 0.4 8.6E-06 40.8 6.5 53 80-133 142-195 (307)
81 PRK04338 N(2),N(2)-dimethylgua 92.6 0.24 5.1E-06 43.5 5.2 53 80-133 66-118 (382)
82 PRK14968 putative methyltransf 92.4 0.48 1E-05 36.2 6.3 51 80-133 32-84 (188)
83 KOG2904|consensus 92.3 0.38 8.3E-06 40.5 5.8 49 80-129 157-206 (328)
84 COG2263 Predicted RNA methylas 92.3 0.49 1.1E-05 37.7 6.1 54 80-136 54-107 (198)
85 PRK11036 putative S-adenosyl-L 92.3 0.28 6.1E-06 40.1 5.1 52 80-134 53-105 (255)
86 PRK00216 ubiE ubiquinone/menaq 92.2 0.54 1.2E-05 37.3 6.5 56 80-135 60-116 (239)
87 cd02440 AdoMet_MTases S-adenos 92.1 0.51 1.1E-05 31.2 5.4 54 80-135 7-60 (107)
88 PLN02244 tocopherol O-methyltr 92.1 0.62 1.4E-05 40.0 7.1 54 80-135 127-181 (340)
89 PRK11207 tellurite resistance 92.0 0.59 1.3E-05 36.8 6.4 52 80-134 39-90 (197)
90 PLN03075 nicotianamine synthas 91.9 0.61 1.3E-05 39.6 6.7 98 80-179 132-262 (296)
91 KOG2915|consensus 91.8 0.9 2E-05 38.2 7.4 74 80-162 114-189 (314)
92 TIGR00537 hemK_rel_arch HemK-r 91.7 0.72 1.6E-05 35.5 6.6 50 80-133 28-77 (179)
93 PRK09328 N5-glutamine S-adenos 91.5 0.64 1.4E-05 38.1 6.4 53 80-133 117-169 (275)
94 PRK10909 rsmD 16S rRNA m(2)G96 91.2 0.7 1.5E-05 36.8 6.0 52 80-133 62-113 (199)
95 COG0293 FtsJ 23S rRNA methylas 91.1 0.21 4.5E-06 40.2 3.0 29 80-108 54-82 (205)
96 COG2520 Predicted methyltransf 90.9 0.46 9.9E-06 41.1 5.1 55 80-136 197-252 (341)
97 PRK00274 ksgA 16S ribosomal RN 90.9 0.5 1.1E-05 39.3 5.2 50 80-135 51-100 (272)
98 COG0030 KsgA Dimethyladenosine 90.8 0.58 1.3E-05 38.9 5.4 52 80-136 39-90 (259)
99 PRK14896 ksgA 16S ribosomal RN 90.7 0.72 1.6E-05 38.0 5.9 51 80-135 38-88 (258)
100 PRK01544 bifunctional N5-gluta 90.6 1.3 2.9E-05 40.3 8.0 51 80-131 356-406 (506)
101 PTZ00338 dimethyladenosine tra 90.6 0.7 1.5E-05 39.1 5.8 53 80-135 45-98 (294)
102 TIGR03438 probable methyltrans 90.5 0.93 2E-05 38.2 6.6 54 80-133 72-126 (301)
103 TIGR02085 meth_trns_rumB 23S r 90.4 0.52 1.1E-05 41.1 5.1 51 80-133 242-292 (374)
104 TIGR03704 PrmC_rel_meth putati 89.7 1.1 2.3E-05 37.0 6.1 50 80-133 95-144 (251)
105 PRK05031 tRNA (uracil-5-)-meth 89.6 0.67 1.5E-05 40.2 5.1 51 80-133 215-265 (362)
106 TIGR02143 trmA_only tRNA (urac 89.6 0.68 1.5E-05 40.1 5.1 51 80-133 206-256 (353)
107 TIGR01934 MenG_MenH_UbiE ubiqu 89.6 1.1 2.5E-05 35.0 6.0 54 80-135 48-101 (223)
108 TIGR00755 ksgA dimethyladenosi 89.3 1 2.2E-05 36.9 5.7 52 80-136 38-89 (253)
109 PRK00517 prmA ribosomal protei 88.7 4.4 9.5E-05 33.1 9.1 49 80-130 128-177 (250)
110 TIGR01444 fkbM_fam methyltrans 88.7 1.9 4.1E-05 31.5 6.4 50 80-130 7-56 (143)
111 PRK12335 tellurite resistance 88.5 1.6 3.4E-05 36.5 6.4 50 80-133 129-178 (287)
112 PF00398 RrnaAD: Ribosomal RNA 88.3 1.1 2.3E-05 37.0 5.2 67 80-151 39-121 (262)
113 KOG1540|consensus 88.1 3 6.5E-05 34.9 7.5 79 80-158 109-237 (296)
114 TIGR00095 RNA methyltransferas 87.9 1.8 3.9E-05 34.0 6.1 51 80-132 58-109 (189)
115 COG0275 Predicted S-adenosylme 87.6 1.2 2.7E-05 37.8 5.2 54 80-134 32-85 (314)
116 PRK11783 rlmL 23S rRNA m(2)G24 87.5 1.5 3.2E-05 41.5 6.2 52 80-133 547-600 (702)
117 PF03848 TehB: Tellurite resis 86.9 2.6 5.7E-05 33.5 6.5 50 80-134 39-89 (192)
118 PF01861 DUF43: Protein of unk 86.3 4.7 0.0001 33.2 7.7 42 92-134 63-104 (243)
119 PF01170 UPF0020: Putative RNA 86.1 2.5 5.3E-05 32.9 5.9 38 98-135 63-101 (179)
120 PRK01544 bifunctional N5-gluta 85.9 2.3 4.9E-05 38.7 6.3 52 80-132 147-199 (506)
121 PF01795 Methyltransf_5: MraW 85.5 0.54 1.2E-05 40.1 2.0 81 80-168 29-116 (310)
122 TIGR00477 tehB tellurite resis 85.2 3.1 6.8E-05 32.6 6.1 49 80-132 39-87 (195)
123 TIGR00406 prmA ribosomal prote 85.0 5.8 0.00013 33.2 8.0 49 80-130 168-217 (288)
124 COG2265 TrmA SAM-dependent met 84.7 1.8 3.9E-05 38.7 5.0 53 80-135 302-354 (432)
125 COG1568 Predicted methyltransf 84.3 3 6.4E-05 35.4 5.7 65 86-150 165-242 (354)
126 PF01728 FtsJ: FtsJ-like methy 84.0 0.77 1.7E-05 35.4 2.1 28 80-107 32-59 (181)
127 COG1092 Predicted SAM-dependen 83.8 2 4.4E-05 37.9 4.9 96 80-189 226-328 (393)
128 PRK01683 trans-aconitate 2-met 83.5 3.6 7.9E-05 33.4 6.1 49 80-134 40-88 (258)
129 COG2890 HemK Methylase of poly 83.0 3.9 8.5E-05 34.3 6.1 51 80-131 119-169 (280)
130 PF02527 GidB: rRNA small subu 82.8 3.1 6.7E-05 32.8 5.1 46 87-133 64-109 (184)
131 PRK14966 unknown domain/N5-glu 82.2 4.7 0.0001 36.0 6.5 52 80-133 260-311 (423)
132 TIGR02021 BchM-ChlM magnesium 81.9 5.9 0.00013 31.4 6.6 52 80-134 64-116 (219)
133 PF03602 Cons_hypoth95: Conser 81.5 4 8.7E-05 32.0 5.4 52 80-133 51-103 (183)
134 smart00828 PKS_MT Methyltransf 81.5 7.7 0.00017 30.6 7.1 53 80-133 8-61 (224)
135 KOG1596|consensus 81.1 1.5 3.2E-05 36.4 2.8 55 80-136 165-219 (317)
136 COG0357 GidB Predicted S-adeno 81.0 3.7 8E-05 33.2 5.1 55 80-135 76-130 (215)
137 PRK04457 spermidine synthase; 79.8 2.4 5.3E-05 35.1 3.8 54 80-134 75-129 (262)
138 COG1041 Predicted DNA modifica 79.4 2.7 5.8E-05 36.5 3.9 53 80-136 206-260 (347)
139 TIGR01983 UbiG ubiquinone bios 79.2 5.9 0.00013 31.2 5.7 52 80-134 54-105 (224)
140 KOG1663|consensus 78.7 6.2 0.00014 32.3 5.6 53 80-132 82-135 (237)
141 PF05958 tRNA_U5-meth_tr: tRNA 78.5 3.3 7.1E-05 35.8 4.3 52 80-134 205-256 (352)
142 COG2230 Cfa Cyclopropane fatty 78.2 8.5 0.00018 32.5 6.5 55 80-136 81-136 (283)
143 PRK07580 Mg-protoporphyrin IX 76.5 9.5 0.00021 30.1 6.2 49 80-131 72-121 (230)
144 PF13578 Methyltransf_24: Meth 76.3 2 4.3E-05 29.9 2.0 69 81-159 6-78 (106)
145 PRK11760 putative 23S rRNA C24 76.2 4.2 9.2E-05 35.3 4.3 46 80-135 220-265 (357)
146 PTZ00098 phosphoethanolamine N 76.1 7.6 0.00017 32.0 5.7 51 80-134 61-111 (263)
147 PLN02540 methylenetetrahydrofo 76.1 5 0.00011 37.1 4.9 51 84-134 44-100 (565)
148 TIGR02072 BioC biotin biosynth 75.8 5.4 0.00012 31.4 4.6 51 80-135 43-93 (240)
149 COG4106 Tam Trans-aconitate me 75.7 6.4 0.00014 32.3 4.9 51 80-136 39-89 (257)
150 PF05185 PRMT5: PRMT5 arginine 75.3 6.7 0.00015 35.2 5.5 59 80-138 195-257 (448)
151 KOG3191|consensus 74.4 11 0.00023 30.1 5.7 50 80-130 52-101 (209)
152 COG2264 PrmA Ribosomal protein 73.8 20 0.00043 30.6 7.6 42 80-123 171-212 (300)
153 COG0116 Predicted N6-adenine-s 73.3 4.1 8.9E-05 35.8 3.5 40 98-137 256-296 (381)
154 PF02353 CMAS: Mycolic acid cy 73.2 8.6 0.00019 32.1 5.3 55 80-136 71-126 (273)
155 PF04989 CmcI: Cephalosporin h 72.9 3.9 8.4E-05 32.9 3.0 54 80-134 41-97 (206)
156 PRK11705 cyclopropane fatty ac 71.6 9.4 0.0002 33.5 5.4 50 80-134 176-225 (383)
157 PRK06922 hypothetical protein; 71.3 12 0.00026 35.4 6.2 54 80-135 427-480 (677)
158 PRK14103 trans-aconitate 2-met 70.8 9.1 0.0002 31.1 4.9 47 80-134 38-84 (255)
159 PF06325 PrmA: Ribosomal prote 70.5 27 0.00059 29.6 7.8 44 80-123 168-211 (295)
160 PLN02396 hexaprenyldihydroxybe 70.4 11 0.00023 32.4 5.4 53 80-135 140-193 (322)
161 PF08242 Methyltransf_12: Meth 70.1 0.91 2E-05 31.1 -1.0 53 80-133 5-57 (99)
162 PRK05134 bifunctional 3-demeth 69.5 14 0.0003 29.4 5.6 51 80-134 57-107 (233)
163 PRK06202 hypothetical protein; 69.1 9.7 0.00021 30.5 4.7 42 80-121 69-113 (232)
164 PF02702 KdpD: Osmosensitive K 69.0 5.2 0.00011 32.2 3.0 82 80-167 12-100 (211)
165 PRK10258 biotin biosynthesis p 68.6 12 0.00026 30.2 5.2 48 80-135 51-98 (251)
166 TIGR00676 fadh2 5,10-methylene 67.9 12 0.00026 31.1 5.1 48 86-133 46-99 (272)
167 PRK10742 putative methyltransf 67.9 12 0.00026 31.0 5.0 51 80-133 97-156 (250)
168 PLN02336 phosphoethanolamine N 67.4 18 0.00038 32.3 6.4 53 80-135 275-327 (475)
169 PRK05973 replicative DNA helic 67.2 12 0.00026 30.7 4.8 40 80-122 71-117 (237)
170 TIGR00478 tly hemolysin TlyA f 67.0 5 0.00011 32.7 2.6 44 80-125 84-130 (228)
171 PRK02290 3-dehydroquinate synt 66.9 5.9 0.00013 34.3 3.1 42 64-106 203-262 (344)
172 TIGR02716 C20_methyl_CrtF C-20 66.9 24 0.00052 29.5 6.8 52 80-133 158-210 (306)
173 PRK13256 thiopurine S-methyltr 66.8 10 0.00023 30.8 4.4 53 80-135 52-116 (226)
174 PRK00811 spermidine synthase; 66.5 12 0.00027 31.2 4.9 54 80-134 85-143 (283)
175 COG3911 Predicted ATPase [Gene 66.2 4.2 9E-05 31.5 1.8 24 80-104 16-40 (183)
176 COG4123 Predicted O-methyltran 66.0 15 0.00032 30.5 5.1 56 80-136 53-109 (248)
177 COG2384 Predicted SAM-dependen 65.9 34 0.00073 27.9 7.0 61 97-157 41-140 (226)
178 TIGR00677 fadh2_euk methylenet 65.6 12 0.00026 31.4 4.7 49 85-133 46-100 (281)
179 TIGR03439 methyl_EasF probable 65.4 14 0.00031 31.7 5.1 52 80-131 85-141 (319)
180 PF00107 ADH_zinc_N: Zinc-bind 64.9 13 0.00029 26.3 4.3 35 83-123 3-37 (130)
181 KOG0822|consensus 64.3 17 0.00036 33.6 5.5 77 80-157 376-458 (649)
182 PRK05599 hypothetical protein; 63.9 44 0.00095 26.7 7.6 62 87-151 14-75 (246)
183 COG2961 ComJ Protein involved 62.7 12 0.00027 31.1 4.1 73 59-133 55-145 (279)
184 PF03059 NAS: Nicotianamine sy 61.6 28 0.0006 29.3 6.1 78 80-157 129-228 (276)
185 TIGR03587 Pse_Me-ase pseudamin 61.5 24 0.00052 28.0 5.5 48 80-133 52-99 (204)
186 PRK09489 rsmC 16S ribosomal RN 61.4 31 0.00067 29.8 6.5 51 80-132 205-255 (342)
187 PF01959 DHQS: 3-dehydroquinat 61.1 6.4 0.00014 34.2 2.2 42 64-106 213-272 (354)
188 KOG2078|consensus 60.4 7.1 0.00015 34.9 2.4 62 71-135 246-312 (495)
189 PRK15001 SAM-dependent 23S rib 60.3 36 0.00079 29.9 6.8 52 80-132 237-291 (378)
190 PF07279 DUF1442: Protein of u 60.1 42 0.00092 27.2 6.6 48 84-131 56-105 (218)
191 PLN02585 magnesium protoporphy 59.9 33 0.00071 29.3 6.4 51 80-133 153-208 (315)
192 PRK11088 rrmA 23S rRNA methylt 59.8 27 0.00058 28.7 5.7 68 80-152 94-175 (272)
193 KOG1541|consensus 59.8 16 0.00034 30.1 4.1 46 69-114 30-90 (270)
194 PF05401 NodS: Nodulation prot 59.7 19 0.00042 28.8 4.6 52 80-136 52-103 (201)
195 PRK11783 rlmL 23S rRNA m(2)G24 59.6 17 0.00036 34.5 4.9 39 97-135 257-296 (702)
196 COG0742 N6-adenine-specific me 59.5 31 0.00066 27.4 5.7 52 80-133 52-104 (187)
197 PF13245 AAA_19: Part of AAA d 59.0 5.8 0.00013 26.4 1.3 37 80-116 17-62 (76)
198 PRK11054 helD DNA helicase IV; 56.6 17 0.00036 34.5 4.4 51 76-126 211-272 (684)
199 COG0378 HypB Ni2+-binding GTPa 56.3 27 0.00059 28.0 4.9 68 80-151 20-94 (202)
200 TIGR02655 circ_KaiC circadian 55.8 54 0.0012 29.6 7.4 40 80-122 270-316 (484)
201 PLN02672 methionine S-methyltr 55.6 33 0.00072 34.4 6.3 53 80-133 127-195 (1082)
202 PLN02490 MPBQ/MSBQ methyltrans 55.3 29 0.00062 30.1 5.3 51 80-134 122-172 (340)
203 cd00537 MTHFR Methylenetetrahy 54.4 25 0.00054 29.0 4.7 38 98-135 64-101 (274)
204 KOG1098|consensus 53.8 13 0.00029 34.9 3.1 39 70-108 41-81 (780)
205 PRK10919 ATP-dependent DNA hel 53.6 13 0.00027 35.2 3.0 44 76-119 17-70 (672)
206 KOG4589|consensus 53.5 15 0.00032 29.6 2.9 25 80-104 78-102 (232)
207 PF10672 Methyltrans_SAM: S-ad 53.3 38 0.00082 28.6 5.6 51 80-132 132-184 (286)
208 PF04378 RsmJ: Ribosomal RNA s 53.2 16 0.00035 30.1 3.3 49 82-133 66-114 (245)
209 TIGR02236 recomb_radA DNA repa 52.8 17 0.00037 30.5 3.5 42 80-121 102-155 (310)
210 KOG0820|consensus 52.2 38 0.00083 28.8 5.3 53 80-135 67-120 (315)
211 COG0685 MetF 5,10-methylenetet 51.9 93 0.002 26.2 7.8 58 98-155 83-146 (291)
212 TIGR01075 uvrD DNA helicase II 51.8 14 0.00031 35.0 3.1 44 76-119 19-72 (715)
213 COG3598 RepA RecA-family ATPas 51.5 22 0.00048 30.9 3.9 43 80-122 95-156 (402)
214 cd01124 KaiC KaiC is a circadi 50.7 32 0.00069 26.0 4.5 40 80-122 6-52 (187)
215 PRK01581 speE spermidine synth 50.6 19 0.00042 31.6 3.5 56 96-160 174-236 (374)
216 PF00580 UvrD-helicase: UvrD/R 50.1 8.3 0.00018 31.6 1.2 39 80-118 20-67 (315)
217 PRK07677 short chain dehydroge 49.4 66 0.0014 25.5 6.4 66 82-151 10-76 (252)
218 COG1066 Sms Predicted ATP-depe 48.6 1E+02 0.0022 27.8 7.6 66 80-157 100-175 (456)
219 PRK10490 sensor protein KdpD; 48.5 57 0.0012 31.9 6.7 81 80-168 31-120 (895)
220 PRK07904 short chain dehydroge 48.4 69 0.0015 25.7 6.3 66 81-149 16-84 (253)
221 COG0421 SpeE Spermidine syntha 48.2 40 0.00087 28.4 5.0 74 80-163 85-162 (282)
222 TIGR03840 TMPT_Se_Te thiopurin 47.8 49 0.0011 26.4 5.3 54 75-135 36-107 (213)
223 PF13401 AAA_22: AAA domain; P 47.8 13 0.00027 26.4 1.7 48 75-122 5-65 (131)
224 PRK04148 hypothetical protein; 47.0 1.2E+02 0.0026 22.6 8.8 71 80-159 25-111 (134)
225 PRK05867 short chain dehydroge 46.5 77 0.0017 25.1 6.3 65 82-150 18-83 (253)
226 PRK07890 short chain dehydroge 46.4 92 0.002 24.5 6.8 67 81-151 13-80 (258)
227 PHA03412 putative methyltransf 46.1 37 0.00081 28.0 4.3 49 80-133 58-108 (241)
228 PRK07831 short chain dehydroge 46.0 1E+02 0.0023 24.5 7.1 51 97-150 43-94 (262)
229 TIGR00417 speE spermidine synt 45.9 66 0.0014 26.5 5.9 53 80-133 81-137 (270)
230 PRK04328 hypothetical protein; 45.7 44 0.00096 27.2 4.8 40 80-122 30-76 (249)
231 PHA03411 putative methyltransf 45.7 59 0.0013 27.4 5.5 49 80-134 73-121 (279)
232 PRK04301 radA DNA repair and r 45.6 26 0.00057 29.6 3.5 42 80-121 109-162 (317)
233 TIGR02238 recomb_DMC1 meiotic 44.5 31 0.00068 29.4 3.8 43 80-122 103-157 (313)
234 COG2933 Predicted SAM-dependen 44.2 25 0.00054 29.8 3.0 47 80-136 220-266 (358)
235 PF02254 TrkA_N: TrkA-N domain 44.2 33 0.00072 23.8 3.4 46 81-133 5-51 (116)
236 PF06745 KaiC: KaiC; InterPro 43.6 27 0.00059 27.6 3.2 40 80-122 26-73 (226)
237 TIGR03878 thermo_KaiC_2 KaiC d 43.5 54 0.0012 26.9 5.0 43 80-122 43-93 (259)
238 KOG1253|consensus 43.5 19 0.00041 32.8 2.4 53 80-132 118-171 (525)
239 PRK06194 hypothetical protein; 43.1 96 0.0021 25.0 6.5 68 80-151 13-81 (287)
240 TIGR03877 thermo_KaiC_1 KaiC d 43.1 49 0.0011 26.6 4.6 45 75-122 22-74 (237)
241 PRK07454 short chain dehydroge 42.9 1.1E+02 0.0024 23.9 6.7 67 81-151 14-81 (241)
242 PRK07102 short chain dehydroge 42.6 95 0.0021 24.4 6.2 53 81-133 9-62 (243)
243 cd01121 Sms Sms (bacterial rad 42.0 1.4E+02 0.003 26.2 7.5 42 80-122 89-135 (372)
244 KOG3420|consensus 41.5 41 0.00089 26.0 3.6 51 80-133 57-107 (185)
245 PHA03222 single-stranded bindi 40.7 8.3 0.00018 33.0 -0.3 40 80-119 256-297 (337)
246 KOG2899|consensus 40.6 42 0.00092 28.1 3.8 39 80-119 67-105 (288)
247 COG4221 Short-chain alcohol de 40.1 78 0.0017 26.2 5.3 49 97-151 31-79 (246)
248 KOG1099|consensus 39.7 61 0.0013 27.0 4.5 65 79-157 49-122 (294)
249 KOG0056|consensus 39.5 46 0.00099 30.9 4.2 117 22-149 507-650 (790)
250 PF05724 TPMT: Thiopurine S-me 39.5 20 0.00044 28.8 1.9 52 80-135 46-110 (218)
251 KOG3010|consensus 39.3 22 0.00048 29.5 2.0 33 80-115 42-74 (261)
252 PRK08287 cobalt-precorrin-6Y C 39.1 59 0.0013 24.9 4.4 36 90-125 118-153 (187)
253 PRK05866 short chain dehydroge 39.0 1.3E+02 0.0029 24.7 6.8 67 80-150 47-114 (293)
254 cd00860 ThrRS_anticodon ThrRS 39.0 74 0.0016 20.8 4.4 44 85-128 16-59 (91)
255 PRK08945 putative oxoacyl-(acy 38.6 1.1E+02 0.0025 24.0 6.1 36 98-133 38-73 (247)
256 TIGR01573 cas2 CRISPR-associat 38.6 47 0.001 23.0 3.4 34 98-131 3-42 (95)
257 PRK08340 glucose-1-dehydrogena 38.4 1.1E+02 0.0024 24.3 6.1 50 97-151 25-74 (259)
258 TIGR00416 sms DNA repair prote 38.3 1E+02 0.0022 27.7 6.3 42 80-122 101-147 (454)
259 cd00984 DnaB_C DnaB helicase C 37.9 41 0.00089 26.7 3.4 30 80-109 20-57 (242)
260 COG1514 LigT 2'-5' RNA ligase 37.8 83 0.0018 24.6 5.0 34 102-135 46-80 (180)
261 PRK07478 short chain dehydroge 37.7 1.3E+02 0.0028 23.7 6.4 51 97-151 31-81 (254)
262 PRK15124 2'-5' RNA ligase; Pro 37.7 1.1E+02 0.0024 23.4 5.7 34 102-135 50-83 (176)
263 PRK15068 tRNA mo(5)U34 methylt 37.4 1.2E+02 0.0027 25.7 6.4 54 80-135 131-185 (322)
264 PRK11773 uvrD DNA-dependent he 36.9 39 0.00084 32.1 3.6 40 80-119 29-77 (721)
265 PF12687 DUF3801: Protein of u 36.5 85 0.0018 25.1 5.0 67 84-151 20-90 (204)
266 PLN03187 meiotic recombination 36.3 58 0.0013 28.2 4.2 43 80-122 133-187 (344)
267 cd01125 repA Hexameric Replica 36.2 46 0.001 26.7 3.5 15 79-93 7-22 (239)
268 cd03115 SRP The signal recogni 36.1 1.2E+02 0.0025 22.8 5.5 42 81-122 8-57 (173)
269 PF09827 CRISPR_Cas2: CRISPR a 35.7 45 0.00097 21.9 2.8 25 98-123 4-29 (78)
270 PRK07109 short chain dehydroge 35.4 1.5E+02 0.0032 25.0 6.7 51 97-151 33-83 (334)
271 PRK03562 glutathione-regulated 35.3 50 0.0011 30.9 3.9 69 80-155 406-494 (621)
272 PRK05876 short chain dehydroge 35.0 1.5E+02 0.0033 24.1 6.4 51 82-133 15-66 (275)
273 PRK08643 acetoin reductase; Va 34.8 1.7E+02 0.0037 23.1 6.6 51 82-133 11-62 (256)
274 KOG0024|consensus 34.8 1.1E+02 0.0023 26.7 5.5 42 80-126 178-220 (354)
275 COG1157 FliI Flagellar biosynt 34.6 1.1E+02 0.0024 27.5 5.6 51 80-130 170-226 (441)
276 PRK09432 metF 5,10-methylenete 34.4 56 0.0012 27.6 3.8 36 98-133 88-123 (296)
277 PRK06749 replicative DNA helic 34.1 52 0.0011 29.3 3.7 41 63-109 182-229 (428)
278 PRK07814 short chain dehydroge 34.1 1.6E+02 0.0035 23.4 6.4 67 80-150 17-84 (263)
279 PLN03186 DNA repair protein RA 33.7 60 0.0013 28.1 3.9 43 80-122 130-184 (342)
280 PRK13255 thiopurine S-methyltr 33.3 1.4E+02 0.0031 23.8 5.9 49 80-135 46-110 (218)
281 PF02534 T4SS-DNA_transf: Type 33.3 66 0.0014 28.5 4.3 50 77-127 48-100 (469)
282 PRK08506 replicative DNA helic 32.9 55 0.0012 29.5 3.7 30 80-109 199-235 (472)
283 PRK13853 type IV secretion sys 32.5 1.6E+02 0.0036 28.3 7.0 60 72-135 424-493 (789)
284 PRK03659 glutathione-regulated 32.4 67 0.0014 29.9 4.3 70 80-156 406-495 (601)
285 PRK00517 prmA ribosomal protei 32.4 1.4E+02 0.0029 24.2 5.7 16 142-157 220-235 (250)
286 PRK08840 replicative DNA helic 32.2 56 0.0012 29.5 3.7 41 63-109 213-261 (464)
287 cd06532 Glyco_transf_25 Glycos 32.2 1.2E+02 0.0025 21.9 4.8 38 98-135 3-40 (128)
288 PLN02823 spermine synthase 31.9 71 0.0015 27.6 4.1 39 96-134 127-169 (336)
289 PRK05855 short chain dehydroge 31.7 1.8E+02 0.0038 26.0 6.8 68 80-151 322-390 (582)
290 PRK08006 replicative DNA helic 31.5 57 0.0012 29.5 3.6 41 63-109 220-268 (471)
291 COG4604 CeuD ABC-type enteroch 31.5 1.3E+02 0.0029 24.6 5.2 91 66-158 12-128 (252)
292 cd00046 DEXDc DEAD-like helica 31.5 1.7E+02 0.0036 19.8 6.2 41 80-120 7-54 (144)
293 PLN02366 spermidine synthase 31.2 1.1E+02 0.0025 25.9 5.2 54 80-134 100-157 (308)
294 PRK14974 cell division protein 31.0 73 0.0016 27.5 4.0 43 80-122 147-197 (336)
295 COG0300 DltE Short-chain dehyd 30.8 3.2E+02 0.0069 22.8 8.5 67 81-150 14-81 (265)
296 PRK08339 short chain dehydroge 30.8 1.6E+02 0.0034 23.7 5.9 37 97-133 33-69 (263)
297 PRK10669 putative cation:proto 30.7 78 0.0017 29.0 4.4 70 80-156 423-512 (558)
298 PRK06172 short chain dehydroge 30.6 1.6E+02 0.0035 23.1 5.9 52 81-133 15-67 (253)
299 COG2813 RsmC 16S RNA G1207 met 30.6 1.8E+02 0.0039 24.8 6.2 50 80-130 167-216 (300)
300 PRK06181 short chain dehydroge 30.4 1.7E+02 0.0038 23.1 6.0 52 81-133 9-61 (263)
301 PRK03612 spermidine synthase; 30.3 72 0.0016 29.2 4.0 54 80-134 306-366 (521)
302 PF03435 Saccharop_dh: Sacchar 30.1 2E+02 0.0044 24.7 6.7 33 98-133 25-57 (386)
303 PRK06904 replicative DNA helic 30.1 58 0.0013 29.4 3.4 41 63-109 217-265 (472)
304 PRK09424 pntA NAD(P) transhydr 29.7 98 0.0021 28.4 4.8 39 80-124 173-212 (509)
305 PRK08645 bifunctional homocyst 29.7 62 0.0014 30.2 3.6 54 80-133 359-422 (612)
306 COG0467 RAD55 RecA-superfamily 29.5 1.2E+02 0.0026 24.6 4.9 40 80-122 30-76 (260)
307 PRK13231 nitrogenase reductase 29.5 38 0.00082 27.5 1.9 24 84-107 14-40 (264)
308 PRK06139 short chain dehydroge 29.5 1.6E+02 0.0034 25.0 5.8 50 82-132 16-66 (330)
309 PRK09361 radB DNA repair and r 29.4 78 0.0017 24.9 3.7 34 80-113 30-71 (225)
310 cd04882 ACT_Bt0572_2 C-termina 29.3 92 0.002 18.8 3.4 23 12-38 42-64 (65)
311 PF13086 AAA_11: AAA domain; P 28.9 31 0.00067 26.6 1.3 39 80-118 24-75 (236)
312 PF05729 NACHT: NACHT domain 28.8 31 0.00068 25.1 1.2 14 80-93 7-21 (166)
313 PRK11727 23S rRNA mA1618 methy 28.4 2.3E+02 0.005 24.3 6.6 47 80-127 123-171 (321)
314 PF06962 rRNA_methylase: Putat 28.3 1.4E+02 0.003 22.5 4.6 36 98-133 1-37 (140)
315 PRK05785 hypothetical protein; 28.2 1.4E+02 0.0029 23.9 5.0 33 80-114 60-92 (226)
316 PF01443 Viral_helicase1: Vira 28.2 33 0.00071 27.0 1.3 16 80-95 5-21 (234)
317 PRK08213 gluconate 5-dehydroge 28.1 2.5E+02 0.0054 22.2 6.5 53 80-133 19-72 (259)
318 PF06258 Mito_fiss_Elm1: Mitoc 28.0 3.8E+02 0.0082 22.8 8.9 117 13-150 183-308 (311)
319 PRK07035 short chain dehydroge 27.8 2.8E+02 0.0061 21.7 6.8 67 81-151 16-83 (252)
320 PF01564 Spermine_synth: Sperm 27.6 59 0.0013 26.6 2.8 54 80-134 85-142 (246)
321 PRK07666 fabG 3-ketoacyl-(acyl 27.6 2.3E+02 0.0049 22.0 6.2 52 81-133 15-67 (239)
322 COG0773 MurC UDP-N-acetylmuram 27.4 84 0.0018 28.5 3.8 55 87-146 21-86 (459)
323 PRK07832 short chain dehydroge 27.3 2.3E+02 0.0049 22.7 6.2 65 83-150 10-75 (272)
324 PF03308 ArgK: ArgK protein; 27.2 43 0.00094 28.0 1.9 29 80-108 36-71 (266)
325 PF05050 Methyltransf_21: Meth 26.9 1.4E+02 0.0031 21.5 4.6 32 84-115 10-42 (167)
326 COG1111 MPH1 ERCC4-like helica 26.9 62 0.0013 29.7 2.9 23 109-131 176-198 (542)
327 PF01755 Glyco_transf_25: Glyc 26.9 1.3E+02 0.0028 23.0 4.5 39 97-135 4-42 (200)
328 PRK10463 hydrogenase nickel in 26.8 1.5E+02 0.0032 25.2 5.0 47 80-129 111-163 (290)
329 PF13207 AAA_17: AAA domain; P 26.7 40 0.00087 23.5 1.4 22 82-103 8-31 (121)
330 PF13679 Methyltransf_32: Meth 26.6 1.7E+02 0.0037 21.3 4.9 41 80-120 34-77 (141)
331 PF00106 adh_short: short chai 26.6 2.5E+02 0.0054 20.2 6.5 50 97-150 26-77 (167)
332 TIGR01040 V-ATPase_V1_B V-type 26.4 1.5E+02 0.0033 26.9 5.3 54 80-133 148-222 (466)
333 PLN02336 phosphoethanolamine N 26.2 2E+02 0.0044 25.5 6.2 48 80-133 46-94 (475)
334 COG1855 ATPase (PilT family) [ 26.2 34 0.00075 31.2 1.2 23 80-102 270-296 (604)
335 PRK12939 short chain dehydroge 26.2 2.2E+02 0.0048 22.1 5.9 52 81-133 15-67 (250)
336 PRK06125 short chain dehydroge 26.0 2.2E+02 0.0048 22.5 5.9 51 82-132 16-67 (259)
337 KOG0025|consensus 26.0 2E+02 0.0044 24.8 5.6 57 65-126 159-215 (354)
338 PF13671 AAA_33: AAA domain; P 25.9 33 0.00071 24.6 0.9 24 81-104 7-32 (143)
339 PRK06914 short chain dehydroge 25.8 2.3E+02 0.0049 22.7 6.0 52 82-133 12-65 (280)
340 PRK11823 DNA repair protein Ra 25.7 94 0.002 27.8 3.9 41 80-121 87-132 (446)
341 PRK06940 short chain dehydroge 25.6 2.6E+02 0.0057 22.6 6.3 50 83-133 11-60 (275)
342 PRK08303 short chain dehydroge 25.5 2.8E+02 0.0062 23.0 6.6 61 87-151 22-93 (305)
343 cd04883 ACT_AcuB C-terminal AC 25.4 1.3E+02 0.0029 18.7 3.7 25 13-39 45-69 (72)
344 cd00009 AAA The AAA+ (ATPases 25.4 76 0.0016 21.9 2.7 29 80-108 26-59 (151)
345 PRK06067 flagellar accessory p 25.1 1.4E+02 0.003 23.7 4.5 42 80-122 32-78 (234)
346 PF08002 DUF1697: Protein of u 25.1 82 0.0018 23.4 2.9 47 108-154 20-71 (137)
347 PRK08085 gluconate 5-dehydroge 24.9 3.2E+02 0.0069 21.4 6.6 53 80-133 16-69 (254)
348 TIGR01074 rep ATP-dependent DN 24.9 81 0.0017 29.5 3.5 41 80-120 21-71 (664)
349 TIGR03172 probable selenium-de 24.9 40 0.00086 27.6 1.2 14 80-93 5-18 (232)
350 PRK10538 malonic semialdehyde 24.7 2.1E+02 0.0046 22.5 5.5 49 81-133 8-57 (248)
351 cd01525 RHOD_Kc Member of the 24.5 1.5E+02 0.0034 19.9 4.1 32 98-129 67-98 (105)
352 PRK07062 short chain dehydroge 24.4 3.2E+02 0.0068 21.6 6.5 52 82-133 17-70 (265)
353 COG2242 CobL Precorrin-6B meth 24.3 2.7E+02 0.0059 22.0 5.8 46 90-135 122-168 (187)
354 PRK12429 3-hydroxybutyrate deh 24.2 2.7E+02 0.0058 21.7 6.0 51 81-132 12-63 (258)
355 cd00861 ProRS_anticodon_short 24.2 1E+02 0.0023 20.3 3.1 43 86-128 20-62 (94)
356 cd01529 4RHOD_Repeats Member o 24.1 2.1E+02 0.0046 18.9 4.7 31 98-128 58-88 (96)
357 COG1064 AdhP Zn-dependent alco 24.0 1.9E+02 0.0042 25.1 5.3 37 86-128 182-218 (339)
358 PF03721 UDPG_MGDP_dh_N: UDP-g 23.8 51 0.0011 25.7 1.7 18 96-113 22-40 (185)
359 cd01123 Rad51_DMC1_radA Rad51_ 23.6 1E+02 0.0023 24.2 3.5 14 80-93 26-40 (235)
360 cd01394 radB RadB. The archaea 23.6 1.3E+02 0.0028 23.5 4.0 13 80-92 26-39 (218)
361 smart00382 AAA ATPases associa 23.5 49 0.0011 22.6 1.4 27 80-106 9-40 (148)
362 PLN02232 ubiquinone biosynthes 23.5 1E+02 0.0022 23.1 3.2 37 100-136 1-40 (160)
363 PRK07576 short chain dehydroge 23.5 2.8E+02 0.0061 22.1 6.1 52 80-132 16-68 (264)
364 TIGR01073 pcrA ATP-dependent D 23.5 81 0.0017 30.0 3.2 44 76-119 19-72 (726)
365 PF10957 DUF2758: Protein of u 23.4 80 0.0017 20.2 2.2 22 140-161 15-37 (60)
366 PRK07024 short chain dehydroge 23.4 1.8E+02 0.0039 23.1 4.9 33 98-132 28-60 (257)
367 KOG1014|consensus 23.4 4.8E+02 0.01 22.4 8.0 69 80-155 57-129 (312)
368 TIGR01618 phage_P_loop phage n 23.4 78 0.0017 25.6 2.7 29 80-109 19-48 (220)
369 cd04908 ACT_Bt0572_1 N-termina 23.3 1.4E+02 0.0029 18.6 3.4 25 12-38 40-64 (66)
370 PF07088 GvpD: GvpD gas vesicl 23.1 38 0.00082 30.4 0.8 44 69-112 4-55 (484)
371 PRK13394 3-hydroxybutyrate deh 23.0 2.7E+02 0.0058 21.8 5.8 52 81-133 15-67 (262)
372 COG1062 AdhC Zn-dependent alco 22.9 1.4E+02 0.003 26.2 4.2 28 92-123 206-233 (366)
373 TIGR03881 KaiC_arch_4 KaiC dom 22.8 1.6E+02 0.0035 23.1 4.4 39 80-121 27-72 (229)
374 PRK08217 fabG 3-ketoacyl-(acyl 22.8 2.9E+02 0.0063 21.4 6.0 50 83-133 15-65 (253)
375 PRK09302 circadian clock prote 22.7 1.6E+02 0.0034 26.7 4.8 40 80-122 280-326 (509)
376 PRK06949 short chain dehydroge 22.7 2.8E+02 0.0061 21.7 5.9 53 80-133 16-69 (258)
377 TIGR02237 recomb_radB DNA repa 22.7 1.2E+02 0.0027 23.3 3.7 35 80-114 19-61 (209)
378 PRK08233 hypothetical protein; 22.6 77 0.0017 23.7 2.4 25 81-105 11-38 (182)
379 PRK05786 fabG 3-ketoacyl-(acyl 22.5 2.8E+02 0.0061 21.4 5.8 51 80-132 12-63 (238)
380 COG5379 BtaA S-adenosylmethion 22.5 1.6E+02 0.0036 25.4 4.4 37 80-117 70-106 (414)
381 PRK13898 type IV secretion sys 22.3 3.3E+02 0.0072 26.2 7.1 47 72-122 444-496 (800)
382 PF13479 AAA_24: AAA domain 22.2 78 0.0017 25.0 2.5 28 80-109 10-38 (213)
383 TIGR01608 citD citrate lyase a 22.1 1E+02 0.0022 21.6 2.7 24 110-133 47-70 (92)
384 cd00859 HisRS_anticodon HisRS 21.9 2E+02 0.0044 18.2 4.2 42 86-127 17-58 (91)
385 PRK07063 short chain dehydroge 21.8 4E+02 0.0087 20.9 6.8 53 81-133 15-69 (260)
386 PF13481 AAA_25: AAA domain; P 21.8 51 0.0011 25.0 1.3 16 78-93 37-53 (193)
387 cd01120 RecA-like_NTPases RecA 21.7 3E+02 0.0065 19.4 6.4 28 80-107 6-38 (165)
388 PF02219 MTHFR: Methylenetetra 21.7 1.2E+02 0.0026 25.3 3.6 37 98-134 76-112 (287)
389 cd01126 TraG_VirD4 The TraG/Tr 21.7 95 0.0021 26.8 3.1 47 80-127 6-55 (384)
390 PRK07326 short chain dehydroge 21.7 2.5E+02 0.0054 21.7 5.3 32 98-131 32-63 (237)
391 TIGR00665 DnaB replicative DNA 21.5 90 0.002 27.5 2.9 30 80-109 202-239 (434)
392 KOG0743|consensus 21.4 1.4E+02 0.0031 27.0 4.1 41 80-120 242-285 (457)
393 PF02056 Glyco_hydro_4: Family 21.4 1.3E+02 0.0028 23.6 3.5 23 97-119 29-51 (183)
394 TIGR03880 KaiC_arch_3 KaiC dom 21.3 1.8E+02 0.004 22.7 4.5 12 80-91 23-35 (224)
395 PRK07714 hypothetical protein; 21.3 1.9E+02 0.004 20.1 4.0 28 96-123 36-63 (100)
396 PRK07402 precorrin-6B methylas 21.2 2.6E+02 0.0056 21.4 5.2 29 93-121 132-160 (196)
397 PF07063 DUF1338: Domain of un 21.2 93 0.002 26.5 2.8 28 12-39 187-216 (302)
398 TIGR00376 DNA helicase, putati 21.1 2.1E+02 0.0046 26.9 5.4 43 80-122 180-227 (637)
399 smart00450 RHOD Rhodanese Homo 21.1 2.4E+02 0.0051 18.0 5.6 33 96-128 56-88 (100)
400 PRK05875 short chain dehydroge 21.0 3.1E+02 0.0068 21.8 5.9 52 81-132 15-68 (276)
401 PRK06124 gluconate 5-dehydroge 20.9 3.3E+02 0.0072 21.3 6.0 35 97-132 36-70 (256)
402 PRK08277 D-mannonate oxidoredu 20.8 4.2E+02 0.0091 21.1 6.6 51 82-133 19-70 (278)
403 cd00738 HGTP_anticodon HGTP an 20.7 2.3E+02 0.005 18.4 4.3 44 85-128 19-62 (94)
404 PF00145 DNA_methylase: C-5 cy 20.5 2.1E+02 0.0044 23.5 4.8 46 80-134 8-53 (335)
405 PRK10858 nitrogen regulatory p 20.1 1.3E+02 0.0029 21.5 3.1 30 99-129 4-33 (112)
406 cd00858 GlyRS_anticodon GlyRS 20.1 2.4E+02 0.0051 20.0 4.5 43 85-128 43-85 (121)
No 1
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=1.5e-39 Score=272.10 Aligned_cols=181 Identities=36% Similarity=0.528 Sum_probs=156.9
Q ss_pred hHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEE-EccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI-YNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 3 ~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
||+++|.++|+++|||++|++++++.+.|++.|+.++++ ++.++.+.+ .....++..++.|++|+|++||.|||++
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-ccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 689999999999999999999999999999999999986 788888432 2234678899999999999999999998
Q ss_pred --------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC---------
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--------- 136 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~--------- 136 (189)
|||||||+|||++|.++|.|+|+|++.+|++.|++|++|+|+.++.++..|++.+..
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 999999999999999999999999999999999999999999999999888876521
Q ss_pred ----------------------------------------------------------------CCCcHHHHHHHHhhC-
Q psy11559 137 ----------------------------------------------------------------PEENEAVVNYALRKR- 151 (189)
Q Consensus 137 ----------------------------------------------------------------~eENE~vV~~~L~~~- 151 (189)
|+|||+||++||++|
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 999999999999999
Q ss_pred CcEEEecCCCCCCCCccCC---CcceeeCccccccc
Q psy11559 152 DVKLVPTGLDFGTEGFVNY---RQNKSYRPEMQEKQ 184 (189)
Q Consensus 152 ~~~l~~~~~~~~~~g~~~~---~~~~~~~p~~~~~~ 184 (189)
+++++++....+.+|+..| .+++|++||...+-
T Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~d 275 (283)
T PF01189_consen 240 DFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTD 275 (283)
T ss_dssp SEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSS
T ss_pred CcEEEeccccccccccccccCCCCEEEeCCCCCCCC
Confidence 9999998877666666544 46789999987654
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.5e-38 Score=281.15 Aligned_cols=180 Identities=34% Similarity=0.503 Sum_probs=154.6
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEcc---CCCCCCChhhccCceeeeCccchh
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNS---TVPIGATPEYLGGHYILQGASKYW 78 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~G~~~vQD~sS~l 78 (189)
+|++++++|++.+||||++|++.+++.+.|++.|+.++++ +|+|+++++... ...+..+++|..|+|||||+|||+
T Consensus 24 ~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~-p~~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~l 102 (470)
T PRK11933 24 DFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPI-PWCEEGFWIERDDEDALPLGNTAEHLSGLFYIQEASSML 102 (470)
T ss_pred HHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeEC-CCCCceEEEecCccccCCcccChHHHCCcEEEECHHHHH
Confidence 5899999999999999999999999999999999999997 999999998742 124788999999999999999998
Q ss_pred h------------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC----
Q psy11559 79 I------------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK---- 136 (189)
Q Consensus 79 ~------------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~---- 136 (189)
| |||||||+|||++|+++|.|+|+|++++|++.|++|++|+|+.||.+++.|++.+..
T Consensus 103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~ 182 (470)
T PRK11933 103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPE 182 (470)
T ss_pred HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchh
Confidence 6 999999999999999999999999999999999999999999999999999986431
Q ss_pred ----------------------------------------------------------------CCCcHHHHHHHHhhC-
Q psy11559 137 ----------------------------------------------------------------PEENEAVVNYALRKR- 151 (189)
Q Consensus 137 ----------------------------------------------------------------~eENE~vV~~~L~~~- 151 (189)
|+|||+||++||++|
T Consensus 183 ~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 899999999999999
Q ss_pred C-cEEEecCCCC-CCC-CccCCCcceeeCcccccc
Q psy11559 152 D-VKLVPTGLDF-GTE-GFVNYRQNKSYRPEMQEK 183 (189)
Q Consensus 152 ~-~~l~~~~~~~-~~~-g~~~~~~~~~~~p~~~~~ 183 (189)
+ ++++++...+ +.+ +. ...+++|++||...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~-~~~~~~r~~P~~~~~ 296 (470)
T PRK11933 263 DAVEFEPLGDLFPGAEKAL-TEEGFLHVFPQIYDS 296 (470)
T ss_pred CcEEecccccccccccccc-CCCCeEEECCCCCCC
Confidence 6 5566654322 211 22 223557999987554
No 3
>KOG1122|consensus
Probab=100.00 E-value=6.2e-38 Score=267.71 Aligned_cols=183 Identities=61% Similarity=0.989 Sum_probs=168.2
Q ss_pred ChhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh-
Q psy11559 1 MSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI- 79 (189)
Q Consensus 1 ~~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~- 79 (189)
|+++++++.++|+++|.||+|.-+.++...|...|+...+.+.|...++++..+...+..++.|..|++.+|+.+|+||
T Consensus 155 ~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~Lpv 234 (460)
T KOG1122|consen 155 YEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSFLPV 234 (460)
T ss_pred HHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCccccee
Confidence 5789999999999999999999999999999999998888777999999988766788999999999999999999998
Q ss_pred ---------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC--------
Q psy11559 80 ---------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK-------- 136 (189)
Q Consensus 80 ---------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~-------- 136 (189)
|||||||+|||++|.|+|.|+|+|.+.+|++.|+.|++|+|+.|.+++++|++.|+.
T Consensus 235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred eecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccc
Confidence 999999999999999999999999999999999999999999999999999998751
Q ss_pred -------------------------------------------------------------CCCcHHHHHHHHhhC-CcE
Q psy11559 137 -------------------------------------------------------------PEENEAVVNYALRKR-DVK 154 (189)
Q Consensus 137 -------------------------------------------------------------~eENE~vV~~~L~~~-~~~ 154 (189)
++|||+||+|+|+++ +++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~k 394 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVK 394 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceE
Confidence 999999999999999 999
Q ss_pred EEecCCCCCCCCccCCCcceeeCccccccccc
Q psy11559 155 LVPTGLDFGTEGFVNYRQNKSYRPEMQEKQER 186 (189)
Q Consensus 155 l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~r~ 186 (189)
|+|..+.||.+| .+++. +|+|++..++|.
T Consensus 395 L~p~~~~iG~~G--~~~~~-~~~psl~~~~r~ 423 (460)
T KOG1122|consen 395 LVPTGLDIGGEG--RFRGG-RFHPSLKLTRRF 423 (460)
T ss_pred eccccccCCCCC--cccCc-ccCcchhheeee
Confidence 999999999999 55555 777777777664
No 4
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-37 Score=264.91 Aligned_cols=179 Identities=33% Similarity=0.438 Sum_probs=153.6
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
+++++++.++|+++|||+++.+.+++.+.|...|+...+. .+.+.++++.. ...+..+++|.+|+|++||.|||+|
T Consensus 73 ~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~-~~~~~~~~i~~-~~~~~~~~~~~~G~~~vQd~sS~l~a~ 150 (355)
T COG0144 73 AIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKP-WVLDEVLRIEA-SGPIGRLPEFAEGLIYVQDEASQLPAL 150 (355)
T ss_pred HHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccC-CccccEEEecC-CCCcccChhhhceEEEEcCHHHHHHHH
Confidence 6889999999999999999999999999999988876663 34556677764 4688889999999999999999998
Q ss_pred --------------cCCchHHHHHHHhcCCCcEE-EEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC--------
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVL-FANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK-------- 136 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v-~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~-------- 136 (189)
|||||||+|||++|.|+|.+ +|+|+|++|++.|++|++|+|+.|+.+++.|++.++.
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 99999999999999997766 9999999999999999999999999999999986432
Q ss_pred --------------------------------------------------------------CCCcHHHHHHHHhhC-Cc
Q psy11559 137 --------------------------------------------------------------PEENEAVVNYALRKR-DV 153 (189)
Q Consensus 137 --------------------------------------------------------------~eENE~vV~~~L~~~-~~ 153 (189)
|||||+||.+||+++ ++
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCc
Confidence 999999999999999 99
Q ss_pred EEEecCCCCCC--CCc-cCCCcceeeCccccc
Q psy11559 154 KLVPTGLDFGT--EGF-VNYRQNKSYRPEMQE 182 (189)
Q Consensus 154 ~l~~~~~~~~~--~g~-~~~~~~~~~~p~~~~ 182 (189)
++++....++. ++. ....++.|++|+.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~ 342 (355)
T COG0144 311 ELEPVRLPWGPLFEGLGSELGKTRRLYPHVHG 342 (355)
T ss_pred eeecccccccccccccccccCCeEEECCCCCC
Confidence 99998766542 221 333445699999863
No 5
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.8e-32 Score=241.19 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=152.5
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
+|++++++++|+++|||++|++++++.+.|++.|+.+++. +++|.++++......+..+++|++|++++||.+||++
T Consensus 153 ~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~ 231 (431)
T PRK14903 153 RIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPG-KHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPL 231 (431)
T ss_pred HHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEEC-CCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHH
Confidence 5899999999999999999999999999999999999885 8999999887533468889999999999999999998
Q ss_pred --------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC---------
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--------- 136 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~--------- 136 (189)
|||||||+|+|++|+++|.|+|+|++++|++.+++|++|+|+.++.+...|++.++.
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence 999999999999999899999999999999999999999999999999999876431
Q ss_pred -----------------------------------------------------------CCCcHHHHHHHHhhC-CcEEE
Q psy11559 137 -----------------------------------------------------------PEENEAVVNYALRKR-DVKLV 156 (189)
Q Consensus 137 -----------------------------------------------------------~eENE~vV~~~L~~~-~~~l~ 156 (189)
++|||+||++||++| +++++
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence 899999999999998 99987
Q ss_pred ecCC---CCCCCCccCCCcceeeCccc
Q psy11559 157 PTGL---DFGTEGFVNYRQNKSYRPEM 180 (189)
Q Consensus 157 ~~~~---~~~~~g~~~~~~~~~~~p~~ 180 (189)
++.. .++.+|.....+ ++++|+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~-~~~~P~~ 417 (431)
T PRK14903 392 DIRDKLEEFEVEGIWDGYG-FLMLPDE 417 (431)
T ss_pred cccccccccccccccCCCc-EEECcCC
Confidence 7642 122343321123 4888874
No 6
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=1.8e-30 Score=228.75 Aligned_cols=132 Identities=27% Similarity=0.362 Sum_probs=122.9
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
+++++++++||+++|||++|++++++.+.|++.|+.++++ +|+|+++++......+..+++|.+|++++||.+||++
T Consensus 168 ~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~ 246 (434)
T PRK14901 168 QLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPI-PGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAP 246 (434)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEEC-CCCCCeEEecCCCCccccChHHhCCeEEEECHHHHHHHH
Confidence 5899999999999999999999999999999999999986 8999999987533458889999999999999999998
Q ss_pred --------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
|||||||++|+++|+++|.|+|+|++++|++.+++|++|+|+.||.+++.|++.+
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~ 315 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNL 315 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhc
Confidence 9999999999999998999999999999999999999999999999999998764
No 7
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.96 E-value=3e-29 Score=207.97 Aligned_cols=167 Identities=44% Similarity=0.613 Sum_probs=136.8
Q ss_pred EEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh---------------
Q psy11559 15 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI--------------- 79 (189)
Q Consensus 15 lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~--------------- 79 (189)
+|||++|++++++++.|++.|+.+++. + .|.++.+......+..+++|.+|+|++||.+||++
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPW-C-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeec-C-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 699999999999999999999988763 3 45666665423458899999999999999999987
Q ss_pred -cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC----------------------
Q psy11559 80 -CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK---------------------- 136 (189)
Q Consensus 80 -AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~---------------------- 136 (189)
|||||||++||++|+++|.|+|+|+++.|++.+++|++++|+.||.++..|++.++.
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~ 158 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRK 158 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCccccc
Confidence 999999999999999889999999999999999999999999999999999865321
Q ss_pred ---------------------------------------------CCCcHHHHHHHHhhC-CcEEEecC-CC-CC-CCCc
Q psy11559 137 ---------------------------------------------PEENEAVVNYALRKR-DVKLVPTG-LD-FG-TEGF 167 (189)
Q Consensus 137 ---------------------------------------------~eENE~vV~~~L~~~-~~~l~~~~-~~-~~-~~g~ 167 (189)
++|||+||++||++| ++.+++.. .. ++ ..+.
T Consensus 159 ~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (264)
T TIGR00446 159 DPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPKGDEFFGANKGK 238 (264)
T ss_pred ChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEeccCCcccccccccc
Confidence 999999999999999 88766321 11 11 1122
Q ss_pred cCCCcceeeCcccccc
Q psy11559 168 VNYRQNKSYRPEMQEK 183 (189)
Q Consensus 168 ~~~~~~~~~~p~~~~~ 183 (189)
....+++|++|+.+.+
T Consensus 239 ~~~~~~~r~~P~~~~~ 254 (264)
T TIGR00446 239 EEVKGALRVFPQIYDC 254 (264)
T ss_pred cccCCeEEECCCCCCC
Confidence 2234567999987665
No 8
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.96 E-value=1.2e-28 Score=216.75 Aligned_cols=174 Identities=25% Similarity=0.333 Sum_probs=144.4
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
++++++++|||+|+|||++|++++++.+.|.+.|+.+++. +++|.++.+.. +..+..++.|++|++++||.|||++
T Consensus 155 ~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~~s~~~~~ 232 (426)
T TIGR00563 155 SICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPH-DLAPDAVRLET-PAAVHALPGFEEGWVTVQDASAQWVAT 232 (426)
T ss_pred HHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeC-CCCCCeEEECC-CCCcccCchhhCCeEEEECHHHHHHHH
Confidence 6899999999999999999999999999999999999885 89999998864 3468889999999999999999998
Q ss_pred --------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEE--EcCCCCCC---------
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVV--TCLDGRQY--------- 134 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~--~~~Da~~~--------- 134 (189)
|||||||++++++++ +|.|+|+|++++|++.+++|++|+|+. +.+ ...|+..+
T Consensus 233 ~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 233 WLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred HhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecccccccccccccccc
Confidence 999999999999997 799999999999999999999999987 443 55555321
Q ss_pred CC------------------------------------------------------------CCCcHHHHHHHHhhC-Cc
Q psy11559 135 GK------------------------------------------------------------PEENEAVVNYALRKR-DV 153 (189)
Q Consensus 135 ~~------------------------------------------------------------~eENE~vV~~~L~~~-~~ 153 (189)
+. ++|||+||++||++| ++
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCC
Confidence 10 899999999999999 88
Q ss_pred EEEecCCCCCCCCccCCCcceeeCccccccc
Q psy11559 154 KLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQ 184 (189)
Q Consensus 154 ~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 184 (189)
+++..... +... .++++++|+.+.|-
T Consensus 391 ~~~~~~~~---~~~~--~~~~~~~P~~~~~d 416 (426)
T TIGR00563 391 PFEKTGTP---EQVR--DGGLQILPHAEEGD 416 (426)
T ss_pred eeccCCCc---cccC--CCcEEECCCCCCCC
Confidence 76543211 1111 22458999876653
No 9
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.96 E-value=9.9e-28 Score=211.93 Aligned_cols=180 Identities=28% Similarity=0.331 Sum_probs=155.0
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
+|++++++++|+++|||+.|++++++.+.|++.|+.+++. +|.|+++.+.. ..+..++.|+.|++++||.+|+++
T Consensus 168 ~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~G~~~~qd~~s~lv~~ 244 (444)
T PRK14902 168 KILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEES-LLSPEALVIEK--GNIAGTDLFKDGLITIQDESSMLVAP 244 (444)
T ss_pred HHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEc-CCCCCeEEEeC--CCcccChHHhCceEEEEChHHHHHHH
Confidence 5899999999999999999999999999999999999985 89999999874 568899999999999999999987
Q ss_pred --------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC----C-----
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG----K----- 136 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~----~----- 136 (189)
||||+||.++++.+++.|.|+|+|+++.|++.+++|++++|+.+|.+++.|++.+. .
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEE
Confidence 99999999999999778999999999999999999999999999999999986531 0
Q ss_pred -----------------------------------------------------------CCCcHHHHHHHHhhC-CcEEE
Q psy11559 137 -----------------------------------------------------------PEENEAVVNYALRKR-DVKLV 156 (189)
Q Consensus 137 -----------------------------------------------------------~eENE~vV~~~L~~~-~~~l~ 156 (189)
++|||.||.+||++| +++++
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence 899999999999998 89998
Q ss_pred ecCCCCCCC-CccCCCcceeeCccccccc
Q psy11559 157 PTGLDFGTE-GFVNYRQNKSYRPEMQEKQ 184 (189)
Q Consensus 157 ~~~~~~~~~-g~~~~~~~~~~~p~~~~~~ 184 (189)
++..+.... ......+++|++|+...|-
T Consensus 405 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~d 433 (444)
T PRK14902 405 PLQHEKPDELVYEVKDGYLQILPNDYGTD 433 (444)
T ss_pred cccccccccccccccCCeEEECCCCCCCC
Confidence 875432110 0001234579999987664
No 10
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.95 E-value=4.2e-27 Score=207.05 Aligned_cols=170 Identities=23% Similarity=0.334 Sum_probs=145.4
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
+|++++++++|+++|||++|++++++.+.|++.|+..++. +|+|+++.+.. ...+..+++|++|++++||.+||++
T Consensus 161 ~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~G~~~iQd~~s~~~~~ 238 (427)
T PRK10901 161 AILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPH-AVGPDAIRLET-PVPVHQLPGFAEGWVSVQDAAAQLAAT 238 (427)
T ss_pred HHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCeEEECC-CCCcccCchhhCceEEEECHHHHHHHH
Confidence 5899999999999999999999999999999999999986 89999998864 3468888999999999999999998
Q ss_pred --------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC---------C
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG---------K 136 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~---------~ 136 (189)
||||+||+++++.+.+ +.|+|+|+++.+++.+++|++++|+. +.+.+.|++.+. .
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCCCCE
Confidence 9999999999999864 89999999999999999999999986 577788875421 0
Q ss_pred ------------------------------------------------------------CCCcHHHHHHHHhhC-CcEE
Q psy11559 137 ------------------------------------------------------------PEENEAVVNYALRKR-DVKL 155 (189)
Q Consensus 137 ------------------------------------------------------------~eENE~vV~~~L~~~-~~~l 155 (189)
++|||+||.+||++| ++++
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 396 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAEL 396 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEE
Confidence 899999999999999 9998
Q ss_pred EecCCCCCCCCccCCCcceeeCcccccc
Q psy11559 156 VPTGLDFGTEGFVNYRQNKSYRPEMQEK 183 (189)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 183 (189)
++... ++ -.+ .+++|+...|
T Consensus 397 ~~~~~----~~---~~~-~~~~P~~~~~ 416 (427)
T PRK10901 397 LDTGT----PQ---QPG-RQLLPGEEDG 416 (427)
T ss_pred ecCCC----CC---CCc-eEECCCCCCC
Confidence 77432 11 112 3888876554
No 11
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.94 E-value=1.6e-25 Score=197.89 Aligned_cols=174 Identities=20% Similarity=0.182 Sum_probs=141.0
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh--
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI-- 79 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~-- 79 (189)
+++++++++||+++|||+++.+++++.+.|.+.|+...+. ++ + ++.+.. ......+.|..|.+++||++|+++
T Consensus 170 ~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~-~~-~-~~~~~~--~~~~~~~~~~~G~~~vqd~~s~l~~~ 244 (445)
T PRK14904 170 AMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKS-GL-P-NFFLSK--DFSLFEPFLKLGLVSVQNPTQALACL 244 (445)
T ss_pred HHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEc-Cc-c-eEEEec--cccccChHHhCcEEEEeCHHHHHHHH
Confidence 5899999999999999999999999999999999988774 43 3 455543 222233799999999999999998
Q ss_pred --------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC---------
Q psy11559 80 --------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--------- 136 (189)
Q Consensus 80 --------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~--------- 136 (189)
|||||||.++++.+.+.|.|+|+|+++.|++.++++++++|+.+|.+.+.|++.+.+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 999999999999998889999999999999999999999999999999999876421
Q ss_pred ---------------------------------------------------------CCCcHHHHHHHHhhC-CcEEEec
Q psy11559 137 ---------------------------------------------------------PEENEAVVNYALRKR-DVKLVPT 158 (189)
Q Consensus 137 ---------------------------------------------------------~eENE~vV~~~L~~~-~~~l~~~ 158 (189)
|+|||+||++||++| ++++++.
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~ 404 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPS 404 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEecc
Confidence 899999999999999 8988765
Q ss_pred CCCCC---CCCccCCCcceeeCcccc
Q psy11559 159 GLDFG---TEGFVNYRQNKSYRPEMQ 181 (189)
Q Consensus 159 ~~~~~---~~g~~~~~~~~~~~p~~~ 181 (189)
..... ..... -.++++++|+..
T Consensus 405 ~~~l~~~~~~~~~-~~~~~~~~P~~~ 429 (445)
T PRK14904 405 PGSLPEPFHEVAH-PKGAILTLPGEH 429 (445)
T ss_pred ccccccccccccC-CCCcEEECCCCC
Confidence 32111 01001 123458888754
No 12
>KOG2360|consensus
Probab=99.87 E-value=1.1e-22 Score=172.66 Aligned_cols=178 Identities=21% Similarity=0.213 Sum_probs=141.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHCCCeee----e----cCCCCCceEEEEccCCCCCCChhhccCceeeeCccchhh
Q psy11559 8 ETQRPLTIRTNTLKTRRRDLAQALVNRGVNLD----P----IGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGASKYWI 79 (189)
Q Consensus 8 ~~~~p~~lRvN~~k~~~~~~~~~L~~~g~~~~----~----~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~vQD~sS~l~ 79 (189)
+.+.|.|+|+||++.+.++....|..++...- | ++++.+.-+.+. .+..+..++.|+.|++++||.+|++|
T Consensus 127 ~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~-~~n~i~~~~ly~~g~~ilqd~asclp 205 (413)
T KOG2360|consen 127 KIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFP-PSNFIVEHELYKNGKFILQDKASCLP 205 (413)
T ss_pred CCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccC-CCcceeeccccccCceEEechhhcch
Confidence 36899999999999988998888887665411 1 122333333333 23457778999999999999999998
Q ss_pred ----------------cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-C------
Q psy11559 80 ----------------CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG-K------ 136 (189)
Q Consensus 80 ----------------AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~-~------ 136 (189)
||||.||+|+|..|+|+|+|+|+|.++.|.+.+++.++..|++++.....|+.... +
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v 285 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDV 285 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccce
Confidence 99999999999999999999999999999999999999999999988899987731 1
Q ss_pred ---------------------------------------------------------------CCCcHHHHHHHHhhC--
Q psy11559 137 ---------------------------------------------------------------PEENEAVVNYALRKR-- 151 (189)
Q Consensus 137 ---------------------------------------------------------------~eENE~vV~~~L~~~-- 151 (189)
.||||+||...|...
T Consensus 286 ~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~~p~ 365 (413)
T KOG2360|consen 286 TYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQNPD 365 (413)
T ss_pred eEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCchhheeeecchhhhhhhhHHHHHHHhhChh
Confidence 799999999999876
Q ss_pred CcEEEe--cCCCCCCCCccCC---CcceeeCccccccccc
Q psy11559 152 DVKLVP--TGLDFGTEGFVNY---RQNKSYRPEMQEKQER 186 (189)
Q Consensus 152 ~~~l~~--~~~~~~~~g~~~~---~~~~~~~p~~~~~~r~ 186 (189)
.+.+.+ +...|...|+..| ++++|-.|+.+++.+.
T Consensus 366 ~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~~p~~~~~~gf 405 (413)
T KOG2360|consen 366 AKRLAPKKVLPAWPHRGLSTFSGAEHCLRASPKSTLTIGF 405 (413)
T ss_pred HhhhchhhcchhhhhcCCccccccccceecccCCCCcceE
Confidence 445555 4555767787777 4577777877776553
No 13
>KOG2198|consensus
Probab=99.73 E-value=1.1e-17 Score=142.15 Aligned_cols=134 Identities=22% Similarity=0.206 Sum_probs=96.2
Q ss_pred hhHHHhCCCCCeEEEEcCCCCCHHHHHHHHHH-----------CC--CeeeecCCCCCceEEEEcc--CCC------CCC
Q psy11559 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVN-----------RG--VNLDPIGKWSKVGLVIYNS--TVP------IGA 60 (189)
Q Consensus 2 ~~l~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-----------~g--~~~~~~~~~~p~~~~~~~~--~~~------~~~ 60 (189)
.|.+....+.|..+|+.......+++...+++ +| ++.....+|.|+.+.+... ... +..
T Consensus 44 ~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~~~~~r~~~~l~r 123 (375)
T KOG2198|consen 44 DFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVKLDEIRKSPPLSR 123 (375)
T ss_pred HHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcCcccccccCCchhh
Confidence 46677888889999987765555554333322 23 2221113777777655431 011 112
Q ss_pred Ch-----hhccCceeeeCccchhh----------------cCCchHHHHHHHhcCC---CcEEEEEcCChHHHHHHHHHH
Q psy11559 61 TP-----EYLGGHYILQGASKYWI----------------CAPHRAAKLAAALMKN---TGVLFANDVSKERSKAIVGNF 116 (189)
Q Consensus 61 ~~-----~~~~G~~~vQD~sS~l~----------------AAPGgKT~~la~~~~~---~g~v~A~D~~~~Rl~~l~~~l 116 (189)
.+ +...|.+|.||.+||+| |||||||.+|.+.+.. +|.|+|||++..|+..|.+.+
T Consensus 124 f~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~ 203 (375)
T KOG2198|consen 124 FHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL 203 (375)
T ss_pred cchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH
Confidence 22 34678999999999998 9999999999988753 589999999999999999999
Q ss_pred HHhCCCeEEEEcCCCCCCC
Q psy11559 117 HRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 117 ~r~g~~nv~~~~~Da~~~~ 135 (189)
+|+--.|+.+++.|+..++
T Consensus 204 ~~l~~~~~~v~~~~~~~~p 222 (375)
T KOG2198|consen 204 KRLPSPNLLVTNHDASLFP 222 (375)
T ss_pred hccCCcceeeecccceecc
Confidence 9998888888888887654
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.22 E-value=6.9e-06 Score=64.68 Aligned_cols=81 Identities=22% Similarity=0.092 Sum_probs=69.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-----------------------
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK----------------------- 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~----------------------- 136 (189)
|+-|+=|..+| ++.+.|+++|+|.++.+++.+++|++|+|++|+.++..||-..-+
T Consensus 43 aGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~ 121 (187)
T COG2242 43 AGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAA 121 (187)
T ss_pred CCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHH
Confidence 89999999999 788899999999999999999999999999999999999976411
Q ss_pred ---------------CCCcHHHHHHHHhhCCc-EEEecCCC
Q psy11559 137 ---------------PEENEAVVNYALRKRDV-KLVPTGLD 161 (189)
Q Consensus 137 ---------------~eENE~vV~~~L~~~~~-~l~~~~~~ 161 (189)
-.||+...-..++++++ +++.+...
T Consensus 122 ~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is 162 (187)
T COG2242 122 WERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQIS 162 (187)
T ss_pred HHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEee
Confidence 57888888888888766 66665443
No 15
>PTZ00146 fibrillarin; Provisional
Probab=97.39 E-value=0.0004 Score=58.57 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=41.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||||++|.|+|+.+.++|.|+|+|+++.-++.|.+..++. .||.++..|++.
T Consensus 141 aG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 141 AASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 9999999999999998999999999965455555554432 678888899864
No 16
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.34 E-value=0.00054 Score=54.33 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=60.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC----------------CCCcHHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK----------------PEENEAV 143 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~----------------~eENE~v 143 (189)
|+.|--+...|.. .-+|+|.+.++.|.+.+++|++--|..|+.+++.||+.+.- .|+-=-|
T Consensus 41 aGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~E~qVpV 117 (252)
T COG4076 41 AGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIEEKQVPV 117 (252)
T ss_pred CCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhcccccHH
Confidence 6666655555544 24899999999999999999998899999999999998753 4555567
Q ss_pred HHHHHh--hCCcEEEecC
Q psy11559 144 VNYALR--KRDVKLVPTG 159 (189)
Q Consensus 144 V~~~L~--~~~~~l~~~~ 159 (189)
++++|+ ++|-+++|..
T Consensus 118 ~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 118 INAVLEFLRYDPTIIPQE 135 (252)
T ss_pred HHHHHHHhhcCCccccHH
Confidence 778887 6677887753
No 17
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.28 E-value=0.0011 Score=53.18 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=50.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|.-|..|+.+.+..|.|+++|+++.-++..+++++++|+.|+.+...|+..
T Consensus 86 ~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 86 TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 999999999999887778999999999999999999999999999999999865
No 18
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.25 E-value=0.0012 Score=53.08 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=50.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
++.|.-|..++.+++..|.|+++|+++.-++..+++++++|+.|+.+...|+..
T Consensus 85 ~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 85 TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 899999999999987778999999999999999999999999999999999865
No 19
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.17 E-value=0.00099 Score=54.98 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCCCCCCcHHHHHHHHhhC-CcEEEe
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYGKPEENEAVVNYALRKR-DVKLVP 157 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~eENE~vV~~~L~~~-~~~l~~ 157 (189)
.|.|+=|..||..+++.|.|+..|+++.|.+..++|++++|+. ||.+.+.|..+-..++| ++.. |...+|
T Consensus 49 tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~--------~~~~~DavfLD 120 (247)
T PF08704_consen 49 TGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE--------LESDFDAVFLD 120 (247)
T ss_dssp -TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT---------TTSEEEEEEE
T ss_pred CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc--------ccCcccEEEEe
Confidence 6778888899999999999999999999999999999999996 79999999764221222 1223 778888
Q ss_pred cCCCC
Q psy11559 158 TGLDF 162 (189)
Q Consensus 158 ~~~~~ 162 (189)
++-+|
T Consensus 121 lp~Pw 125 (247)
T PF08704_consen 121 LPDPW 125 (247)
T ss_dssp SSSGG
T ss_pred CCCHH
Confidence 87666
No 20
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.11 E-value=0.0015 Score=51.67 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=48.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~ 133 (189)
|++|.-+..+|..++..+.|+|+|+++.+++..++|++++|+ .++.+...|+..
T Consensus 49 ~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 49 CGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 899999999998887778999999999999999999999994 678888888864
No 21
>PRK04266 fibrillarin; Provisional
Probab=96.93 E-value=0.0026 Score=51.77 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=44.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||+|+.|.+++..++ .|.|+|+|+++..++.+.+++++. .||.+...|+..
T Consensus 81 ~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~ 131 (226)
T PRK04266 81 AASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK 131 (226)
T ss_pred cCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC
Confidence 999999999999886 789999999999999888887754 678888888864
No 22
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.89 E-value=0.0037 Score=49.28 Aligned_cols=53 Identities=23% Similarity=0.161 Sum_probs=46.8
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||.|.-|..++... +.+.|+++|+++..++.+++|++++|+.++.+...|+..
T Consensus 49 ~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 49 AGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 89999998888654 458999999999999999999999999889999888753
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.89 E-value=0.0046 Score=44.16 Aligned_cols=53 Identities=28% Similarity=0.300 Sum_probs=47.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+++|.-+..++..+.+ +.++++|+++..++..+++++.+++.++.+...|+..
T Consensus 28 ~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 28 AGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred CCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 8999999999988754 7999999999999999999999999888888888753
No 24
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.88 E-value=0.0047 Score=49.25 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=49.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
+|.|.-|..++++++..|.|+++|+++.-++..++|+++.|+. ++.+...|+..
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 9999999999999876789999999999999999999999986 48899999875
No 25
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.88 E-value=0.0032 Score=48.80 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
|+-||=|.|+|... -.|+|+|+++.|++.+++|++-+|+. +|..++.|..+
T Consensus 8 cG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~ 59 (163)
T PF09445_consen 8 CGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE 59 (163)
T ss_dssp -TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH
T ss_pred cCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH
Confidence 78899999999863 37999999999999999999999975 79999999854
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.64 E-value=0.0073 Score=48.49 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=50.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+|.|.-+..+++..+..+.|+++|+++..++..++++++.++.++.++..|+..++
T Consensus 54 cG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 54 CGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred CCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 89999999999887777899999999999999999999999988999999987654
No 27
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.61 E-value=0.0061 Score=48.50 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=46.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDG 131 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da 131 (189)
||.|..|..++..+. .+.|+++|+++..++.+++++++.++.|+.+.+.|+
T Consensus 49 cGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~ 99 (202)
T PRK00121 49 FGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDA 99 (202)
T ss_pred cCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCH
Confidence 999999999998764 468999999999999999999999998999999998
No 28
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.59 E-value=0.0056 Score=49.26 Aligned_cols=54 Identities=26% Similarity=0.277 Sum_probs=49.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
++.|=-|+.||.+.+..|.|+++|+++.-.+..+++++++|..||.+..+|+..
T Consensus 81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 888888999999998889999999999999999999999999999999999975
No 29
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.57 E-value=0.0095 Score=50.47 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=60.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh----CCcEE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK----RDVKL 155 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~----~~~~l 155 (189)
.|.||.|..|++..++.|+|+|+|.++.=++..+++++. ..++.++..|...+. ..+.. .|..+
T Consensus 28 lG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~----------~~l~~~~~~vDgIl 95 (296)
T PRK00050 28 FGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK----------EVLAEGLGKVDGIL 95 (296)
T ss_pred cCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH----------HHHHcCCCccCEEE
Confidence 799999999999987789999999999999999998877 467999999987653 22222 37788
Q ss_pred EecCCCC-----CCCCcc
Q psy11559 156 VPTGLDF-----GTEGFV 168 (189)
Q Consensus 156 ~~~~~~~-----~~~g~~ 168 (189)
.+++++- +.+||+
T Consensus 96 ~DLGvSs~Qld~~~RGFS 113 (296)
T PRK00050 96 LDLGVSSPQLDDAERGFS 113 (296)
T ss_pred ECCCccccccCCCcCCcc
Confidence 8876541 356765
No 30
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.56 E-value=0.008 Score=51.50 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=50.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|+|.-|..++..++..|.|+++|+++..++..+++++++|+.|+.+...|+...
T Consensus 89 ~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 89 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred CCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc
Confidence 8999999999998876789999999999999999999999999999999998654
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.54 E-value=0.012 Score=44.25 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=49.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+|.|.=+..++....+.+.++++|+++.-++..+++++++|+.|+.+.+.|...++
T Consensus 12 cG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 12 CGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP 67 (152)
T ss_dssp -TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC
T ss_pred CcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc
Confidence 67788788888666667899999999999999999999999999999999998865
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.50 E-value=0.02 Score=44.70 Aligned_cols=52 Identities=15% Similarity=0.030 Sum_probs=45.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
++.|.-+..++... +.+.|+++|+++..++.+++|+++.++.++.+...|+.
T Consensus 40 ~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 40 AGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred CcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 88998888888764 45899999999999999999999999888888887764
No 33
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.47 E-value=0.0085 Score=47.00 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=46.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|+|.=+..++.. .+.+.|+++|+++..++.+++++++.|+.|+.+...|+..+
T Consensus 51 cGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~ 104 (181)
T TIGR00138 51 SGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF 104 (181)
T ss_pred CCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc
Confidence 7888777777654 45689999999999999999999999998899999998775
No 34
>PLN02476 O-methyltransferase
Probab=96.38 E-value=0.011 Score=49.56 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=49.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
.+-|.-|..||..|.+.|.|+++|.++.+.+..++++++.|+. +|.+..+|+.+
T Consensus 127 T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 127 VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 8889999999999988899999999999999999999999997 69999999854
No 35
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.28 E-value=0.014 Score=47.63 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=48.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
.+-|.-|..||..+...|+|+++|+++..++..++|+++.|+. +|++...|+.+
T Consensus 77 t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 77 VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence 7788888899988887899999999999999999999999986 59999999854
No 36
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.23 E-value=0.014 Score=46.92 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=48.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~ 132 (189)
.+-|--|..||+.+.+.|+|+++|+++.+.+..++++++.|+. +|.+...||.
T Consensus 54 t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 54 TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 7888899999999988899999999999999999999999986 5999999985
No 37
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.20 E-value=0.016 Score=46.95 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=47.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEc-CCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTC-LDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~-~Da~ 132 (189)
.+-|-.|..||..+..+|+|+++|+++.|.+..++|+++.|+.+ |++.. .|+.
T Consensus 68 T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 68 TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 77888899999999878999999999999999999999999987 66666 4764
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.15 E-value=0.019 Score=47.40 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=48.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+++|.-+.+++..++..+.|+++|+++..++..+++.+..|+.++.+...|...++
T Consensus 86 ~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~ 141 (272)
T PRK11873 86 SGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP 141 (272)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC
Confidence 78877677777777777899999999999999999999999988888888876654
No 39
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.12 E-value=0.024 Score=45.16 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=45.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
++.|..|..++.+. +.++++|+++..++..+++++++|+.++.+...|+..
T Consensus 87 ~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 137 (212)
T PRK00312 87 TGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK 137 (212)
T ss_pred CCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence 88899888888764 5899999999999999999999999999999999754
No 40
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.07 E-value=0.014 Score=47.62 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=43.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
+|+|-=|..++..++.+|.|+++|+|+.=++..++.+++.|..+|..+++|+..++-
T Consensus 56 ~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 56 CGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp -TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred CChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 888877778888888889999999999999999999999999899999999988754
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.04 E-value=0.024 Score=44.77 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=48.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||+|.-+..++... ..+.|+++|+++..++..++++++.|+.++++...|+..+.
T Consensus 54 cGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~ 108 (187)
T PRK00107 54 SGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG 108 (187)
T ss_pred CCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC
Confidence 89998888888754 45899999999999999999999999988999999987754
No 42
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.95 E-value=0.02 Score=47.07 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=52.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
+|.|-=|.+++...+ +|.|++.|+|++-|+.-++.+...|..++..+.+||..+|-
T Consensus 60 ~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 60 CGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred CCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 888988999999988 89999999999999999999999999999999999998764
No 43
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.038 Score=45.69 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=56.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCCCCCCcHHHHHHHHhhCCcEEEec
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYGKPEENEAVVNYALRKRDVKLVPT 158 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~eENE~vV~~~L~~~~~~l~~~ 158 (189)
.+.|.=|..||-..++.|.|+..|+++.+++..++|++.+|+.+ |.....|.+.... ++ ..|...+|+
T Consensus 103 tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~---~~--------~vDav~LDm 171 (256)
T COG2519 103 TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID---EE--------DVDAVFLDL 171 (256)
T ss_pred cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc---cc--------ccCEEEEcC
Confidence 56666677888878889999999999999999999999999987 8888888876431 11 236666666
Q ss_pred CCCC
Q psy11559 159 GLDF 162 (189)
Q Consensus 159 ~~~~ 162 (189)
+-+|
T Consensus 172 p~PW 175 (256)
T COG2519 172 PDPW 175 (256)
T ss_pred CChH
Confidence 5554
No 44
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.87 E-value=0.033 Score=48.77 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=50.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe--EEEEcCCCCCCCCCCCcHHHHHHHH--hhCCcEE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN--SVVTCLDGRQYGKPEENEAVVNYAL--RKRDVKL 155 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~~eENE~vV~~~L--~~~~~~l 155 (189)
||-|--+.-.+....+-..|++||+|+.-++.+++|++.-|+.. +++.+.|| ..+| .+..|-+
T Consensus 58 aasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA-------------n~ll~~~~~~fD~ 124 (377)
T PF02005_consen 58 AASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDA-------------NVLLYSRQERFDV 124 (377)
T ss_dssp -TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H-------------HHHHCHSTT-EEE
T ss_pred ccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhH-------------HHHhhhccccCCE
Confidence 89999998887765555689999999999999999999999875 88888897 3344 2337888
Q ss_pred EecCCCCCCC
Q psy11559 156 VPTGLDFGTE 165 (189)
Q Consensus 156 ~~~~~~~~~~ 165 (189)
+|++ +||+|
T Consensus 125 IDlD-PfGSp 133 (377)
T PF02005_consen 125 IDLD-PFGSP 133 (377)
T ss_dssp EEE---SS--
T ss_pred EEeC-CCCCc
Confidence 9987 46644
No 45
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.031 Score=44.94 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=47.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
++.|--|..||++. |.|+++|+++.=.+.-++|++++|..||.+.+.|+..
T Consensus 81 tGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~ 131 (209)
T COG2518 81 TGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK 131 (209)
T ss_pred CCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 88888899999886 4999999999999999999999999999999999987
No 46
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.49 E-value=0.031 Score=49.08 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=49.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|.|.-+.++|... +++.++|+|++...+..+.+++.+.|+.||.++..|++.+
T Consensus 131 cGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l 184 (390)
T PRK14121 131 FGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL 184 (390)
T ss_pred CcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh
Confidence 99999999999886 4679999999999999999999999999999999999653
No 47
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.45 E-value=0.078 Score=46.39 Aligned_cols=54 Identities=24% Similarity=0.169 Sum_probs=46.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||.|.=+.-++....+-..|++||+++.-++.+++|++..++.++++++.|+..
T Consensus 53 aGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~ 106 (374)
T TIGR00308 53 SASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAAN 106 (374)
T ss_pred CchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHH
Confidence 889988887776543335899999999999999999999999889999999853
No 48
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.35 E-value=0.049 Score=46.56 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=45.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||+|+.+..++. + ...++++|+++.-++..+.|++++|+.++.+...|++.++
T Consensus 191 cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 191 CGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred CCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 999987766443 3 3689999999999999999999999998889999998764
No 49
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.35 E-value=0.046 Score=43.06 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=47.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|.=+..+|... +.+.++++|+++..++..++++++.|+.|+.++..|+..
T Consensus 25 cG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~ 77 (194)
T TIGR00091 25 CGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANE 77 (194)
T ss_pred CCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHH
Confidence 89999888999765 457999999999999999999999999999999999864
No 50
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.31 E-value=0.073 Score=37.35 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=43.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDG 131 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da 131 (189)
++.|.-+..++... ....|+++|+|+.-++..++++.+.+. .+|.+.+.|+
T Consensus 10 cG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 10 CGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 78888888888843 357899999999999999999977665 5799999999
No 51
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.87 E-value=0.056 Score=45.95 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=46.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
||.|.-|..+|.. ...|+++|+++.-++..++|+++.|+.|+.+...|+..+
T Consensus 182 cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~ 233 (315)
T PRK03522 182 CGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF 233 (315)
T ss_pred CCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence 9999999999873 358999999999999999999999998899999998653
No 52
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.87 E-value=0.084 Score=43.59 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=48.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
.+-|-.|..||..+...|+|+++|.++.+.+.-++++++.|+. +|.+..+|+.+
T Consensus 88 T~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 88 VYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred ChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 7778888999998888899999999999999999999999975 69999888753
No 53
>PRK14967 putative methyltransferase; Provisional
Probab=94.86 E-value=0.088 Score=42.32 Aligned_cols=51 Identities=25% Similarity=0.132 Sum_probs=42.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||+|.-+..++.. +.+.|+++|+++..++..++|+++.|+ ++.+...|...
T Consensus 45 cG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~ 95 (223)
T PRK14967 45 TGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWAR 95 (223)
T ss_pred CCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhh
Confidence 8999988888864 235899999999999999999999987 57777777654
No 54
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.82 E-value=0.13 Score=44.82 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=53.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh-C-CcEEEe
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK-R-DVKLVP 157 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~-~-~~~l~~ 157 (189)
+|-|--..-.|-..+.. .+++||+++.=.+.+++|++.-...+..+++.|| ..+|.+ | .|..+|
T Consensus 61 satGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA-------------N~lm~~~~~~fd~ID 126 (380)
T COG1867 61 SATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDA-------------NALLHELHRAFDVID 126 (380)
T ss_pred cccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchH-------------HHHHHhcCCCccEEe
Confidence 78887777777665544 8999999999999999999988555666767776 456665 4 888999
Q ss_pred cCCCCCC
Q psy11559 158 TGLDFGT 164 (189)
Q Consensus 158 ~~~~~~~ 164 (189)
++ +||+
T Consensus 127 iD-PFGS 132 (380)
T COG1867 127 ID-PFGS 132 (380)
T ss_pred cC-CCCC
Confidence 87 3553
No 55
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.78 E-value=0.15 Score=40.49 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=46.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|-|.-+.++|.... +-.++++|++..++....+.+.+.|++|+.+++.||..
T Consensus 26 ~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 26 CGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp -TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 788999999998765 56899999999999999999999999999999999987
No 56
>KOG2730|consensus
Probab=94.77 E-value=0.081 Score=43.10 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCCCCCCcHHHHHHHHhhC--CcEEE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYGKPEENEAVVNYALRKR--DVKLV 156 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~eENE~vV~~~L~~~--~~~l~ 156 (189)
.+-||-|+|-|.. -..|+|.|+|+-|+...++|++-+|+.+ |...++|..+. -..|+-. -+-.+
T Consensus 103 ~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~----------~~~lq~~K~~~~~v 169 (263)
T KOG2730|consen 103 CGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL----------ASKLKADKIKYDCV 169 (263)
T ss_pred hcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH----------HHHHhhhhheeeee
Confidence 7778888888763 2378999999999999999999999975 88888886432 2222211 23345
Q ss_pred ecCCCCCCCCccCC
Q psy11559 157 PTGLDFGTEGFVNY 170 (189)
Q Consensus 157 ~~~~~~~~~g~~~~ 170 (189)
....+||-|+-+.+
T Consensus 170 f~sppwggp~y~~~ 183 (263)
T KOG2730|consen 170 FLSPPWGGPSYLRA 183 (263)
T ss_pred ecCCCCCCcchhhh
Confidence 55666776665544
No 57
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.73 E-value=0.13 Score=41.82 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=47.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||.|.--+|+++..+.+|.|+|+|.++.-.+.|-..+++= +||..+..||+...
T Consensus 82 AasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~ 135 (229)
T PF01269_consen 82 AASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPE 135 (229)
T ss_dssp TTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGG
T ss_pred ccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChH
Confidence 9999999999999999999999999999888888777763 68999999999754
No 58
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=94.73 E-value=0.11 Score=41.93 Aligned_cols=53 Identities=23% Similarity=0.047 Sum_probs=47.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|.-+..++.... ...++++|+++..++..+++++..|+.++.+...|+..
T Consensus 96 ~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 96 TGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred CcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 899999999988764 46999999999999999999999999889999999855
No 59
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.68 E-value=0.11 Score=36.14 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=44.0
Q ss_pred cCCchHHHHHHHhc--CCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALM--KNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~--~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+++|..+..++... +.+..++++|+|+.-++..+++.+..|+ ++...+.|++++
T Consensus 6 cG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l 61 (101)
T PF13649_consen 6 CGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL 61 (101)
T ss_dssp -TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH
T ss_pred cCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC
Confidence 68899999999887 2236999999999999999999999887 688999999764
No 60
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.48 E-value=0.16 Score=40.75 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=49.7
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCC-CCC-------------------------------------CC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQ-YGK-------------------------------------PE 138 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~-~~~-------------------------------------~e 138 (189)
+++|+|++++=++..++++++.|+.+ |.+...||.. +.+ |.
T Consensus 23 ~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 23 KAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 69999999999999999999999865 9999999865 322 88
Q ss_pred CcHHHHHHHHhhCCcEEEec
Q psy11559 139 ENEAVVNYALRKRDVKLVPT 158 (189)
Q Consensus 139 ENE~vV~~~L~~~~~~l~~~ 158 (189)
-+...++.+|.+++|.+++-
T Consensus 103 ~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 103 THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp S-HHHHHHHHHHTTEEEEEE
T ss_pred CChHHHHHHHHHCCCEEEEe
Confidence 88999999999998888774
No 61
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.28 E-value=0.14 Score=40.97 Aligned_cols=55 Identities=16% Similarity=0.049 Sum_probs=43.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~ 135 (189)
|+=|.=|.++|... ....|+|+|+++.=++.|++|++.-++.+ |.+.+.|++.+.
T Consensus 110 aGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 110 AGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp -TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred CCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 99999999998753 34589999999999999999999999986 889999999875
No 62
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.11 E-value=0.076 Score=41.44 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=33.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
||+|+.|.+++..+...++|+++|+++.+ +..++.++..|..
T Consensus 41 ~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~ 82 (188)
T TIGR00438 41 AAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFT 82 (188)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCC
Confidence 99999999999988767899999999864 2345666666754
No 63
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.05 E-value=0.15 Score=45.49 Aligned_cols=51 Identities=12% Similarity=0.005 Sum_probs=46.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||.|.-|..+|... +.|+|+|+|+.-++..++|++..|+.|+.+...|+..
T Consensus 306 cGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 306 CGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred ccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 99999999988763 5899999999999999999999999999999999753
No 64
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.99 E-value=0.23 Score=40.01 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=47.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||.|...+|+++..+ .|.|+|++.++.=.+.|-..+++ -.|+..+..||+...
T Consensus 85 AasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~ 137 (231)
T COG1889 85 AASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPE 137 (231)
T ss_pred ccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcH
Confidence 999999999999998 89999999999988888887776 468999999998754
No 65
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.88 E-value=0.24 Score=42.13 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=58.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh----C-CcE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK----R-DVK 154 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~----~-~~~ 154 (189)
.|-||-|..|++.+++ |+|+|+|.++.=+...+++++.++ .++.++..+...+ ...|++ . |..
T Consensus 29 lG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l----------~~~l~~~~~~~vDgI 96 (305)
T TIGR00006 29 LGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANF----------FEHLDELLVTKIDGI 96 (305)
T ss_pred CCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHH----------HHHHHhcCCCcccEE
Confidence 6899999999998865 999999999999999999888764 4688888776554 333322 2 778
Q ss_pred EEecCCC---C--CCCCcc
Q psy11559 155 LVPTGLD---F--GTEGFV 168 (189)
Q Consensus 155 l~~~~~~---~--~~~g~~ 168 (189)
+.|++++ + ..+||+
T Consensus 97 l~DLGvSS~Qld~~~RGFS 115 (305)
T TIGR00006 97 LVDLGVSSPQLDDPERGFS 115 (305)
T ss_pred EEeccCCHhhcCCCCCCCc
Confidence 8887754 1 456775
No 66
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=93.87 E-value=0.24 Score=40.50 Aligned_cols=56 Identities=14% Similarity=0.004 Sum_probs=47.4
Q ss_pred cCCchHHHHHHHhc-CCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALM-KNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~-~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~ 135 (189)
||.|.-+..++..+ .+.+.++++|+|+.-++..++++.+.|.. ++.+...|...++
T Consensus 65 cGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 65 CSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 88888777888764 45679999999999999999999998875 6888999987754
No 67
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.85 E-value=0.2 Score=40.82 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=47.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
.|-|.-+++||..-. +-..+++|++...+..+...++++|++|+.+++.||.
T Consensus 57 fG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~ 108 (227)
T COG0220 57 FGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAV 108 (227)
T ss_pred CCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 889999999998754 4589999999999999999999999999999999985
No 68
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.78 E-value=0.22 Score=41.78 Aligned_cols=53 Identities=17% Similarity=0.003 Sum_probs=46.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
+|.|.-+..++.... .+.++|+|+|+.-++..++|+++.|+. ++.+...|...
T Consensus 130 ~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 130 TGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred CchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 999999999988654 479999999999999999999999985 68899998743
No 69
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=93.74 E-value=0.11 Score=41.56 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=34.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||||+-|..+++.+++.|.|+|+|+++- ....++.+.+.|.+.
T Consensus 60 ~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~ 102 (209)
T PRK11188 60 AAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRD 102 (209)
T ss_pred ccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCC
Confidence 9999999999999887899999999981 123457777777654
No 70
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.73 E-value=0.27 Score=40.62 Aligned_cols=56 Identities=16% Similarity=0.059 Sum_probs=45.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHH---hCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHR---LGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r---~g~~nv~~~~~Da~~~~ 135 (189)
+++|.-+..++..++..+.|+++|+|+.=++..+++... .+..++.+.+.|+..++
T Consensus 82 cGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 82 CGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 899988888888776678999999999999988876542 23457999999998765
No 71
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.55 E-value=0.14 Score=34.21 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=38.8
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
++.|--+..+++. ....++++|+++..++..+++....+ +.+...|+..++
T Consensus 5 ~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~ 55 (95)
T PF08241_consen 5 CGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLP 55 (95)
T ss_dssp -TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSS
T ss_pred CcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCc
Confidence 5677777788876 45799999999999998888776554 448888888875
No 72
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=93.23 E-value=0.24 Score=43.85 Aligned_cols=51 Identities=14% Similarity=0.004 Sum_probs=46.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||.|.-|..+|... ..|+|+|+++.-++..++|++..|+.|+.+...|+..
T Consensus 301 cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 301 CGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET 351 (431)
T ss_pred CCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence 99999999998753 4899999999999999999999999999999999753
No 73
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.22 E-value=0.37 Score=38.99 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=47.3
Q ss_pred cCCchHHHHHHHhcC-CCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMK-NTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~-~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~~ 135 (189)
+|+|.-+..++.... +.+.++++|+|+.-++..+++++..+. .++.+...|...++
T Consensus 62 cG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~ 119 (239)
T TIGR00740 62 CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 119 (239)
T ss_pred CCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC
Confidence 899998888888753 467999999999999999999988775 36888888988765
No 74
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=93.14 E-value=0.2 Score=44.18 Aligned_cols=52 Identities=15% Similarity=-0.057 Sum_probs=43.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC--eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI--NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~--nv~~~~~Da~~ 133 (189)
|+.|+-+.+++ +.+...|+++|+|+..++..++|++..|+. ++.+...|+..
T Consensus 229 sgtG~~~l~aa--~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~ 282 (396)
T PRK15128 229 SYTGGFAVSAL--MGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK 282 (396)
T ss_pred cCCCHHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHH
Confidence 99999766544 344458999999999999999999999985 78999999754
No 75
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=93.11 E-value=0.25 Score=37.80 Aligned_cols=66 Identities=9% Similarity=-0.000 Sum_probs=51.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-------------CCCcHHHHHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK-------------PEENEAVVNY 146 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~-------------~eENE~vV~~ 146 (189)
||.|.=|..+++. .+.++|+|+++.-++.+++++.. ..++.++..|+.+++. ..-....+..
T Consensus 22 ~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~~~~i~~ 96 (169)
T smart00650 22 PGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNISTPILFK 96 (169)
T ss_pred CCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCcccHHHHHHH
Confidence 7888888888876 36899999999999999998864 4579999999988643 1233577777
Q ss_pred HHhh
Q psy11559 147 ALRK 150 (189)
Q Consensus 147 ~L~~ 150 (189)
+++.
T Consensus 97 ~l~~ 100 (169)
T smart00650 97 LLEE 100 (169)
T ss_pred HHhc
Confidence 7764
No 76
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.08 E-value=0.28 Score=34.67 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=44.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~ 134 (189)
++.|.-+.+++... ...++++|+++..++..+.++.+.++ .++.+.+.|.+.+
T Consensus 9 ~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 62 (117)
T PF13659_consen 9 CGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDL 62 (117)
T ss_dssp STTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHH
T ss_pred cchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhc
Confidence 67777667777664 57999999999999999999999998 4699999998654
No 77
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=93.04 E-value=0.83 Score=35.09 Aligned_cols=53 Identities=19% Similarity=0.073 Sum_probs=46.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|+.|-=+..++... ...+|+++|+++.=++..++|+++.++.++.+...|...
T Consensus 40 ~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~ 92 (170)
T PF05175_consen 40 CGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE 92 (170)
T ss_dssp STTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT
T ss_pred CChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc
Confidence 88998888888764 356899999999999999999999999889999999865
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=92.91 E-value=0.36 Score=40.36 Aligned_cols=53 Identities=11% Similarity=-0.065 Sum_probs=45.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~ 133 (189)
+|.|.-+..++.... ...|+|+|+|+..++..++|+++.|+.+ +.+...|...
T Consensus 123 ~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 123 TGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred ccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 888988888887653 4699999999999999999999999864 8888888643
No 79
>PRK08317 hypothetical protein; Provisional
Probab=92.65 E-value=0.52 Score=37.21 Aligned_cols=54 Identities=19% Similarity=0.080 Sum_probs=43.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
++.|.-+..++..+...+.++++|+++..+...+++.... ..++.+...|...+
T Consensus 28 ~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~ 81 (241)
T PRK08317 28 CGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-GPNVEFVRGDADGL 81 (241)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-CCceEEEecccccC
Confidence 7889989999988866689999999999999888873322 34688888887654
No 80
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.62 E-value=0.4 Score=40.76 Aligned_cols=53 Identities=17% Similarity=0.000 Sum_probs=46.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
+|.|.-+..++.... ...|+|+|+|+.-++..++|+++.|+. +|.+...|...
T Consensus 142 ~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 195 (307)
T PRK11805 142 TGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA 195 (307)
T ss_pred chhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 899998888887653 479999999999999999999999985 58999998743
No 81
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=92.60 E-value=0.24 Score=43.48 Aligned_cols=53 Identities=19% Similarity=0.071 Sum_probs=46.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||-|.-+..+|...+ ...|+++|+++.-++.+++|++..|+.++.+.+.|+..
T Consensus 66 aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~ 118 (382)
T PRK04338 66 SASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA 118 (382)
T ss_pred CcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence 899999998887654 34899999999999999999999999988899999754
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=92.42 E-value=0.48 Score=36.25 Aligned_cols=51 Identities=16% Similarity=-0.038 Sum_probs=43.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe--EEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN--SVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n--v~~~~~Da~~ 133 (189)
++.|.-+..++.. ...++++|+++.-++..+++++..++.+ +.+...|...
T Consensus 32 ~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 84 (188)
T PRK14968 32 TGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE 84 (188)
T ss_pred cccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc
Confidence 8999988888876 4689999999999999999999988876 7777777644
No 83
>KOG2904|consensus
Probab=92.34 E-value=0.38 Score=40.50 Aligned_cols=49 Identities=20% Similarity=0.013 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCL 129 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~ 129 (189)
.|.|-=+..|+.-+. +++++|+|+|+.-++...+|++|+++.+ +.+.+.
T Consensus 157 tGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 157 TGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred CCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 788877888877776 8999999999999999999999999975 666644
No 84
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.31 E-value=0.49 Score=37.65 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=41.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
|+-|- ..++..+-+--+|+|+|+++.=++.+++|+++++ .+|..++.|.+++..
T Consensus 54 ~GTG~--La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~~ 107 (198)
T COG2263 54 AGTGI--LAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFRG 107 (198)
T ss_pred CCcCH--HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcCC
Confidence 45554 4444443344699999999999999999999944 569999999998753
No 85
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.27 E-value=0.28 Score=40.14 Aligned_cols=52 Identities=17% Similarity=0.044 Sum_probs=44.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~ 134 (189)
+|.|.-|..+++. ...|+++|+++.-++..++++++.|+. ++.+++.|+..+
T Consensus 53 cG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 53 GGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 8999988888874 358999999999999999999999974 688888877554
No 86
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=92.16 E-value=0.54 Score=37.33 Aligned_cols=56 Identities=20% Similarity=0.142 Sum_probs=45.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~ 135 (189)
+++|.-+.+++........++++|+++..++..++++...+.. ++.+...|+..++
T Consensus 60 ~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 60 CGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred CCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 8999999999887743579999999999999999998876553 5778888876643
No 87
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=92.08 E-value=0.51 Score=31.15 Aligned_cols=54 Identities=17% Similarity=-0.010 Sum_probs=41.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+++|+-+..++. .....++++|+++..+...++.....+..++.+...|...+.
T Consensus 7 ~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 7 CGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60 (107)
T ss_pred CCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc
Confidence 677887777776 345799999999999998887555555667888888876653
No 88
>PLN02244 tocopherol O-methyltransferase
Probab=92.07 E-value=0.62 Score=40.02 Aligned_cols=54 Identities=9% Similarity=0.006 Sum_probs=46.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~ 135 (189)
+|.|+-|.++++.. .+.|+++|+++.-++..++++++.|+. ++.+...|+..++
T Consensus 127 CG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~ 181 (340)
T PLN02244 127 CGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP 181 (340)
T ss_pred CCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC
Confidence 99999888998865 368999999999999999999998875 6999999987754
No 89
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.96 E-value=0.59 Score=36.84 Aligned_cols=52 Identities=15% Similarity=-0.043 Sum_probs=44.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|.|.=+.++|+. ...|+|+|+|+.=++..+++++..|+.++.+...|...+
T Consensus 39 cG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~ 90 (197)
T PRK11207 39 CGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL 90 (197)
T ss_pred CCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC
Confidence 8999988888874 248999999999999999999998988888888887654
No 90
>PLN03075 nicotianamine synthase; Provisional
Probab=91.85 E-value=0.61 Score=39.55 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=66.6
Q ss_pred cCCchHHHHHH-HhcCCCcEEEEEcCChHHHHHHHHHHHH-hCCCe-EEEEcCCCCCCCC-----------------CCC
Q psy11559 80 CAPHRAAKLAA-ALMKNTGVLFANDVSKERSKAIVGNFHR-LGVIN-SVVTCLDGRQYGK-----------------PEE 139 (189)
Q Consensus 80 AAPGgKT~~la-~~~~~~g~v~A~D~~~~Rl~~l~~~l~r-~g~~n-v~~~~~Da~~~~~-----------------~eE 139 (189)
+|||+=|+.++ +.+.++|+++..|+++..++.-++++++ .|+.+ |.....|+..... +++
T Consensus 132 cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~ 211 (296)
T PLN03075 132 SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEE 211 (296)
T ss_pred CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEeccccccccc
Confidence 89998776544 3455678999999999999999999965 88865 9998898876432 356
Q ss_pred cHHHHHHHHhhC---CcEEEecCCCCCC----------CCccCCCcceeeCcc
Q psy11559 140 NEAVVNYALRKR---DVKLVPTGLDFGT----------EGFVNYRQNKSYRPE 179 (189)
Q Consensus 140 NE~vV~~~L~~~---~~~l~~~~~~~~~----------~g~~~~~~~~~~~p~ 179 (189)
-+++++.+.+.- ++-++-.. +|. ..+..|+...+++|.
T Consensus 212 k~~vL~~l~~~LkPGG~Lvlr~~--~G~r~~LYp~v~~~~~~gf~~~~~~~P~ 262 (296)
T PLN03075 212 KVKVIEHLGKHMAPGALLMLRSA--HGARAFLYPVVDPCDLRGFEVLSVFHPT 262 (296)
T ss_pred HHHHHHHHHHhcCCCcEEEEecc--cchHhhcCCCCChhhCCCeEEEEEECCC
Confidence 667777766532 34333321 221 123355556677775
No 91
>KOG2915|consensus
Probab=91.84 E-value=0.9 Score=38.22 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=56.8
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCCCCCCcHHHHHHHHhhC-CcEEEe
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYGKPEENEAVVNYALRKR-DVKLVP 157 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~eENE~vV~~~L~~~-~~~l~~ 157 (189)
.+.|+=+..++-...++|.++.+|.|..|.+...+.+++.|+. ||.++..|-..-....+ .-. |...+|
T Consensus 114 TGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k---------s~~aDaVFLD 184 (314)
T KOG2915|consen 114 TGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK---------SLKADAVFLD 184 (314)
T ss_pred CCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc---------ccccceEEEc
Confidence 5666777788888899999999999999999999999999985 78888888766432221 112 667777
Q ss_pred cCCCC
Q psy11559 158 TGLDF 162 (189)
Q Consensus 158 ~~~~~ 162 (189)
++-+|
T Consensus 185 lPaPw 189 (314)
T KOG2915|consen 185 LPAPW 189 (314)
T ss_pred CCChh
Confidence 66555
No 92
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=91.74 E-value=0.72 Score=35.53 Aligned_cols=50 Identities=14% Similarity=-0.027 Sum_probs=41.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
++.|.-+..++... ..|+++|+++.-++..++|++..++ ++.+...|..+
T Consensus 28 ~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 77 (179)
T TIGR00537 28 AGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK 77 (179)
T ss_pred CChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc
Confidence 78888888887642 2799999999999999999998886 57888888654
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.47 E-value=0.64 Score=38.11 Aligned_cols=53 Identities=15% Similarity=-0.152 Sum_probs=44.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|.-+..++.... ...++++|+++..++..++|++.....++.+...|...
T Consensus 117 ~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 117 TGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred CcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 899999999988764 57999999999999999999984344578888888743
No 94
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=91.16 E-value=0.7 Score=36.84 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=42.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|+-|.=+..++.. ..+.|+++|+++.-++.+++|++.+|+.++.+.+.|+..
T Consensus 62 ~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~ 113 (199)
T PRK10909 62 AGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALS 113 (199)
T ss_pred CCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHH
Confidence 7888766544333 246899999999999999999999999889998888743
No 95
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.15 E-value=0.21 Score=40.15 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKER 108 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~R 108 (189)
|||||=|-.++..++.+|.|+|+|+.+-.
T Consensus 54 AAPGgWsQva~~~~~~~~~ivavDi~p~~ 82 (205)
T COG0293 54 AAPGGWSQVAAKKLGAGGKIVAVDILPMK 82 (205)
T ss_pred CCCCcHHHHHHHHhCCCCcEEEEECcccc
Confidence 99999999999999988999999998754
No 96
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=90.94 E-value=0.46 Score=41.12 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=47.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~ 136 (189)
||=|-=|..+|-.-. -+|+|+|+++.=++.|++|++.-++.+ |..+++|++.+..
T Consensus 197 AGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 197 AGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred CCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh
Confidence 999999888887532 349999999999999999999999987 8899999988653
No 97
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=90.92 E-value=0.5 Score=39.29 Aligned_cols=50 Identities=8% Similarity=-0.000 Sum_probs=42.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+|+|.=|..+++.. +.|+|+|+++.-++.+++++.. .++.+.++|+.+++
T Consensus 51 ~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~ 100 (272)
T PRK00274 51 PGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVD 100 (272)
T ss_pred CCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCC
Confidence 88999888888863 3899999999999999887642 67999999998765
No 98
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=90.78 E-value=0.58 Score=38.93 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=44.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
+|.|+=|..|++.. ..|+|+|+|+.-+..|++.+. ...|+.++.+|+.+++.
T Consensus 39 pG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 39 PGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDF 90 (259)
T ss_pred CCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcc
Confidence 78889999999864 479999999999999998876 35689999999998754
No 99
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=90.65 E-value=0.72 Score=38.00 Aligned_cols=51 Identities=8% Similarity=-0.070 Sum_probs=43.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+|+|.=|..+++. .+.|+++|+++.-++.++++++. ..|+.++++|+.+++
T Consensus 38 ~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 38 PGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD 88 (258)
T ss_pred CccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC
Confidence 8999989998886 25899999999999999988865 468999999998865
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.62 E-value=1.3 Score=40.26 Aligned_cols=51 Identities=6% Similarity=-0.084 Sum_probs=45.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDG 131 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da 131 (189)
+|-|+-+.++|.... +-.++++|++..++..+.+.+++.|+.|+.++..|+
T Consensus 356 ~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~ 406 (506)
T PRK01544 356 FGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL 406 (506)
T ss_pred CCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 899999999998765 468999999999999999999999999999988775
No 101
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=90.56 E-value=0.7 Score=39.08 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=44.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhC-CCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLG-VINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g-~~nv~~~~~Da~~~~ 135 (189)
+|.|.=|..+++. .+.|+|+|+|+.=++.+++++...| ..++.++..|+.+++
T Consensus 45 ~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 45 PGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred CchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 7777777777765 3579999999999999999999887 468999999997653
No 102
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.54 E-value=0.93 Score=38.24 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~ 133 (189)
||.|.||..|++.+.....++++|+|+.=|+...+++.+... .+|..+++|..+
T Consensus 72 cGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 72 SGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 899999999998875346899999999999988888876431 236667777654
No 103
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=90.42 E-value=0.52 Score=41.09 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=44.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||-|.=|..+|.. ...|+++|+++.-++..++|++..|+.|+.+...|+.+
T Consensus 242 cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~ 292 (374)
T TIGR02085 242 CGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAK 292 (374)
T ss_pred CCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence 8888877777742 35899999999999999999999999899999998754
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=89.67 E-value=1.1 Score=36.96 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=41.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|..+..++..+. ...|+++|+|+.-++..++|+++.|. .+.+.|..+
T Consensus 95 ~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~ 144 (251)
T TIGR03704 95 CGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYD 144 (251)
T ss_pred CchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechh
Confidence 999999999988764 35899999999999999999998874 456667643
No 105
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=89.64 E-value=0.67 Score=40.24 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=45.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|+.|+=|..++... ..|+++|+++.=++.+++|++..|+.|+.+...|+.+
T Consensus 215 ~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 215 CGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred ccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 99999888777653 4899999999999999999999999999999999754
No 106
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=89.62 E-value=0.68 Score=40.08 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=45.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||.|.=|..++... ..|+|+|+++.=++.+++|++..|+.|+.+...|+.+
T Consensus 206 ~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 206 CGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred ccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 89999888888764 4899999999999999999999999999999988754
No 107
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.56 E-value=1.1 Score=35.04 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=43.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+++|.-+..++....+.+.++++|+++..+...++++. ...++.+...|....+
T Consensus 48 ~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 48 CGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP 101 (223)
T ss_pred CCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC
Confidence 88999888888877544799999999999999998876 3346777788877654
No 108
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=89.28 E-value=1 Score=36.93 Aligned_cols=52 Identities=6% Similarity=-0.169 Sum_probs=42.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
+|+|.=|..|++.. ..++++|+++.-++.+++++.. ..++.+.+.|+..++.
T Consensus 38 ~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 38 PGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL 89 (253)
T ss_pred CCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh
Confidence 89999999998875 3599999999999999887754 4578999999987653
No 109
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=88.73 E-value=4.4 Score=33.10 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=35.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLD 130 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~D 130 (189)
+|.|.-+..++. .+ .+.|+|+|+|+..++..++|+++.++ .++.+...|
T Consensus 128 cGsG~l~i~~~~-~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~ 177 (250)
T PRK00517 128 CGSGILAIAAAK-LG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD 177 (250)
T ss_pred CcHHHHHHHHHH-cC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC
Confidence 777765544433 33 34799999999999999999999988 345554444
No 110
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=88.71 E-value=1.9 Score=31.53 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=39.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLD 130 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~D 130 (189)
|..|--|..++.. .+.+.++++|.++.=...++++++..|+.++.+.+..
T Consensus 7 a~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a 56 (143)
T TIGR01444 7 ANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA 56 (143)
T ss_pred CCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 5567666666665 4556999999999999999999999888776665543
No 111
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.47 E-value=1.6 Score=36.47 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|.=+..++.. ...|+|+|+|+.-++.++++++..|+ ++.+...|...
T Consensus 129 cG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~ 178 (287)
T PRK12335 129 CGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINS 178 (287)
T ss_pred CCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhc
Confidence 8888877788763 36899999999999999999999998 68887777654
No 112
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=88.28 E-value=1.1 Score=37.03 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=52.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC---------------C-CCcHHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK---------------P-EENEAV 143 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~---------------~-eENE~v 143 (189)
+|+|.=|..|++.. ..++++|+++.-++.|++.+. .-.|+.++..|+.++.. | .-.+.+
T Consensus 39 pG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~i 113 (262)
T PF00398_consen 39 PGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPI 113 (262)
T ss_dssp STTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHH
T ss_pred CCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhhcCCceEEEEEecccchHHH
Confidence 88999999998875 689999999999999998766 45689999999998764 2 234567
Q ss_pred HHHHHhhC
Q psy11559 144 VNYALRKR 151 (189)
Q Consensus 144 V~~~L~~~ 151 (189)
+..++..+
T Consensus 114 l~~ll~~~ 121 (262)
T PF00398_consen 114 LRKLLELY 121 (262)
T ss_dssp HHHHHHHG
T ss_pred HHHHhhcc
Confidence 77777633
No 113
>KOG1540|consensus
Probab=88.06 E-value=3 Score=34.91 Aligned_cols=79 Identities=6% Similarity=-0.045 Sum_probs=61.0
Q ss_pred cCCchHHHHHHHhcCCC-----cEEEEEcCChHHHHHHHHHHHHhCCC---eEEEEcCCCCCCCC---------------
Q psy11559 80 CAPHRAAKLAAALMKNT-----GVLFANDVSKERSKAIVGNFHRLGVI---NSVVTCLDGRQYGK--------------- 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~-----g~v~A~D~~~~Rl~~l~~~l~r~g~~---nv~~~~~Da~~~~~--------------- 136 (189)
.+.|=-|.-|.....++ ++|+.+|++++=|+.-+++.++.++. .++.+++||.+++-
T Consensus 109 GGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIR 188 (296)
T KOG1540|consen 109 GGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIR 188 (296)
T ss_pred CCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEeccee
Confidence 45555566677777654 79999999999999999999888875 38889999988753
Q ss_pred ---------------------------CCCcHHHHHHHHhhCCcEEEec
Q psy11559 137 ---------------------------PEENEAVVNYALRKRDVKLVPT 158 (189)
Q Consensus 137 ---------------------------~eENE~vV~~~L~~~~~~l~~~ 158 (189)
+.+|.+.+.+|-..+-|.++|.
T Consensus 189 N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 189 NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhch
Confidence 6667678899888775555554
No 114
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=87.91 E-value=1.8 Score=34.01 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=42.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~ 132 (189)
|+.|+=+..++.. +...|+++|.++.=++.+++|++..|+. ++.+.+.|+.
T Consensus 58 aGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 58 AGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 8899776666664 2348999999999999999999999986 6888888873
No 115
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.63 E-value=1.2 Score=37.81 Aligned_cols=54 Identities=6% Similarity=-0.023 Sum_probs=46.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
-|-||.|..+.+.....|+++|+|.++.=++.-++.++.++ .++.++......+
T Consensus 32 lG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l 85 (314)
T COG0275 32 LGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL 85 (314)
T ss_pred CCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence 37899999999999888999999999999999999999888 5677777665443
No 116
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=87.47 E-value=1.5 Score=41.51 Aligned_cols=52 Identities=17% Similarity=-0.019 Sum_probs=44.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC--eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI--NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~--nv~~~~~Da~~ 133 (189)
|+.|+-|.++|.. +...|+++|+|+.-++..++|++..|+. ++.++..|+.+
T Consensus 547 ~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~ 600 (702)
T PRK11783 547 AYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA 600 (702)
T ss_pred CCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH
Confidence 9999999998863 2347999999999999999999999986 68999999743
No 117
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=86.94 E-value=2.6 Score=33.46 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=41.1
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|-|.=+..||+. | .|+|+|+|+.=++.+++..++-+++ |.+...|-..+
T Consensus 39 cG~GRNalyLA~~----G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~ 89 (192)
T PF03848_consen 39 CGEGRNALYLASQ----GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF 89 (192)
T ss_dssp -TTSHHHHHHHHT----T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB
T ss_pred CCCcHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc
Confidence 8999999999984 5 7999999999999999999999987 88888886544
No 118
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=86.31 E-value=4.7 Score=33.24 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=28.9
Q ss_pred hcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 92 LMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 92 ~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+.+....|+.+|+++.=++-+++..++.|++ |++..+|.+.-
T Consensus 63 l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~ 104 (243)
T PF01861_consen 63 LTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP 104 (243)
T ss_dssp HHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS-
T ss_pred hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc
Confidence 3344568999999999999999999999998 99999999873
No 119
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=86.14 E-value=2.5 Score=32.94 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.4
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYG 135 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~ 135 (189)
.+++.|+++.-++..++|++++|+.. |.+...|++.++
T Consensus 63 ~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 63 KIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp -EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred cEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 49999999999999999999999874 888999999876
No 120
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=85.92 E-value=2.3 Score=38.74 Aligned_cols=52 Identities=12% Similarity=-0.006 Sum_probs=43.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~ 132 (189)
+|.|.=+..++..+. .+.|+|+|+|+.-++..++|+++.|+. ++.+...|..
T Consensus 147 ~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~ 199 (506)
T PRK01544 147 TGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF 199 (506)
T ss_pred CchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchh
Confidence 888887777777653 479999999999999999999999985 5888888754
No 121
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=85.48 E-value=0.54 Score=40.12 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=50.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHH--HhhCCcEEEe
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYA--LRKRDVKLVP 157 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~--L~~~~~~l~~ 157 (189)
-|-||.|..|++...+ |+|+|+|.|+.=++..+++++.++ .++.++..+...+. ...... +..-|..|.|
T Consensus 29 ~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~------~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 29 FGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLD------EYLKELNGINKVDGILFD 100 (310)
T ss_dssp -TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHH------HHHHHTTTTS-EEEEEEE
T ss_pred CCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHH------HHHHHccCCCccCEEEEc
Confidence 4889999999999887 999999999988888777776552 46888888876552 122211 1111667888
Q ss_pred cCCCC-----CCCCcc
Q psy11559 158 TGLDF-----GTEGFV 168 (189)
Q Consensus 158 ~~~~~-----~~~g~~ 168 (189)
++++- ..+||+
T Consensus 101 LGvSS~Qld~~~RGFS 116 (310)
T PF01795_consen 101 LGVSSMQLDDPERGFS 116 (310)
T ss_dssp -S--HHHHHTGGGSSS
T ss_pred cccCHHHhCCCCCCCC
Confidence 77652 346765
No 122
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=85.17 E-value=3.1 Score=32.61 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=39.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
+|.|.=+..+|+. .+.|+|+|+|+.-++.++++.+..|+. +.....|..
T Consensus 39 cG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~ 87 (195)
T TIGR00477 39 CGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDIN 87 (195)
T ss_pred CCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccch
Confidence 8889888888873 358999999999999999998888875 666666654
No 123
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=84.95 E-value=5.8 Score=33.16 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=37.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLD 130 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~D 130 (189)
+|+|.=+..++. .+ .+.|+|+|+++..++..++|+++.++.+ +.+...|
T Consensus 168 cGsG~lai~aa~-~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~ 217 (288)
T TIGR00406 168 CGSGILSIAALK-LG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY 217 (288)
T ss_pred CChhHHHHHHHH-cC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc
Confidence 888876655554 33 4689999999999999999999988864 5555444
No 124
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.65 E-value=1.8 Score=38.67 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=47.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||=|+=|.+||.. -..|+++|+++.=++..++|++..|+.|+.....|+.++.
T Consensus 302 CGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 302 CGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred cCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 9999999999843 4689999999999999999999999999999999987654
No 125
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=84.31 E-value=3 Score=35.38 Aligned_cols=65 Identities=22% Similarity=0.131 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-------------CCCcHHHHHHHHhh
Q psy11559 86 AKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK-------------PEENEAVVNYALRK 150 (189)
Q Consensus 86 T~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~-------------~eENE~vV~~~L~~ 150 (189)
|...+++.+-.-+|..+|+++.=++.+.+..+.+|++|+++..+|-++.-+ |-|.=.-++.||.+
T Consensus 165 tsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~alk~FlgR 242 (354)
T COG1568 165 TSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIKALKLFLGR 242 (354)
T ss_pred hHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchhhHHHHHHHHhc
Confidence 444444443334788899999999999999999999999999999988432 55555555666544
No 126
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=83.97 E-value=0.77 Score=35.39 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKE 107 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~ 107 (189)
|||||=|..+++..+..+.|+|+|+.+.
T Consensus 32 ~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 32 AAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp -TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred CcccceeeeeeecccccceEEEEecccc
Confidence 8999999999988766789999999987
No 127
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=83.81 E-value=2 Score=37.85 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=63.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC--eEEEEcCCCCCCCCCCCcHHHHHHHHh---hCCcE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI--NSVVTCLDGRQYGKPEENEAVVNYALR---KRDVK 154 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~--nv~~~~~Da~~~~~~eENE~vV~~~L~---~~~~~ 154 (189)
|=-||=|.|.|. ++-..++++|+|..=++..++|++--|+. .+..+++|+-++ ++++-+ ++|+.
T Consensus 226 sYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~---------l~~~~~~g~~fDlI 294 (393)
T COG1092 226 SYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW---------LRKAERRGEKFDLI 294 (393)
T ss_pred ccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH---------HHHHHhcCCcccEE
Confidence 667887777664 44448999999999999999999988875 377888887543 344444 23666
Q ss_pred EEecCCCCC--CCCccCCCcceeeCccccccccccCC
Q psy11559 155 LVPTGLDFG--TEGFVNYRQNKSYRPEMQEKQERVSP 189 (189)
Q Consensus 155 l~~~~~~~~--~~g~~~~~~~~~~~p~~~~~~r~~~~ 189 (189)
++|.+ +|+ ..+. |....-|..-+..|.++|+|
T Consensus 295 ilDPP-sF~r~k~~~--~~~~rdy~~l~~~~~~iL~p 328 (393)
T COG1092 295 ILDPP-SFARSKKQE--FSAQRDYKDLNDLALRLLAP 328 (393)
T ss_pred EECCc-ccccCcccc--hhHHHHHHHHHHHHHHHcCC
Confidence 66543 343 2233 54332333447778888776
No 128
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=83.54 E-value=3.6 Score=33.39 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=38.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|+|.=|..+++... .+.|+++|+++.-++..++++ .++.+...|+..+
T Consensus 40 cG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~ 88 (258)
T PRK01683 40 CGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW 88 (258)
T ss_pred ccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence 899998889988753 579999999999888887763 4566677777654
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=82.96 E-value=3.9 Score=34.27 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=37.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDG 131 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da 131 (189)
.|.|-=+..+|... ....|+|+|+|+.=++..++|+++.|+.++.++..|.
T Consensus 119 TGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl 169 (280)
T COG2890 119 TGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169 (280)
T ss_pred CChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec
Confidence 55555445555433 2469999999999999999999999986655555553
No 130
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=82.84 E-value=3.1 Score=32.76 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=37.1
Q ss_pred HHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 87 KLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 87 ~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
.-+| .+.++..++-+|-+.+|+.-|+.....+|++|+++.+.++..
T Consensus 64 ipLa-I~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 64 IPLA-IARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp HHHH-HH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred HHHH-HhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 4444 344677899999999999999999999999999999988766
No 131
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=82.16 E-value=4.7 Score=35.97 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=42.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|.=+..++... +...++|+|+|+.=++..++|+++.|. ++.+...|...
T Consensus 260 cGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e 311 (423)
T PRK14966 260 TGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFD 311 (423)
T ss_pred ChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhc
Confidence 77777666666543 357899999999999999999999986 68888888743
No 132
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=81.92 E-value=5.9 Score=31.36 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~ 134 (189)
||.|.=+..++.. ...|+++|+++.-+...++++...+. .++.....|....
T Consensus 64 cG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 64 CGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL 116 (219)
T ss_pred CCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC
Confidence 8889877777763 35899999999999999999988776 3688888776553
No 133
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=81.55 E-value=4 Score=31.98 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=38.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~ 133 (189)
||.|.=..-.++ .+-..++++|.+..-++.+++|++.+|+.+ +.+...|+..
T Consensus 51 aGSGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 51 AGSGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp -TTSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred CccCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 888865543333 333489999999999999999999999986 8899988643
No 134
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=81.53 E-value=7.7 Score=30.64 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=43.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
++.|+-+..+++... ...++++|+|+.=+...++++++.|+. ++.+...|...
T Consensus 8 cG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~ 61 (224)
T smart00828 8 CGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61 (224)
T ss_pred CCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 678887888887763 468999999999999999999998875 57888888744
No 135
>KOG1596|consensus
Probab=81.12 E-value=1.5 Score=36.42 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=45.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
||.|...+|+++..++.|.|+|+|.|..-=+.|....++ -+||..+..||+-..+
T Consensus 165 AasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~K 219 (317)
T KOG1596|consen 165 AASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAK 219 (317)
T ss_pred ccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchh
Confidence 999998899999999999999999987655666665554 3689999999987544
No 136
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=80.99 E-value=3.7 Score=33.24 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=45.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||+|==..-|| ++.++..|+-.|-..+|+.-|+...+.+|+.|+.+++..+..+.
T Consensus 76 SGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~ 130 (215)
T COG0357 76 SGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG 130 (215)
T ss_pred CCCCCchhhHH-HhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc
Confidence 55554445555 55567789999999999999999999999999999999887765
No 137
>PRK04457 spermidine synthase; Provisional
Probab=79.80 E-value=2.4 Score=35.07 Aligned_cols=54 Identities=15% Similarity=0.058 Sum_probs=40.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~ 134 (189)
+|-|.=+..++... +.+.|+++|+++.-++..++++...+. .++.++..|+..+
T Consensus 75 ~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 75 LGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred CCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 55555555677665 467999999999999999988764443 5789999998654
No 138
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.44 E-value=2.7 Score=36.48 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=40.9
Q ss_pred cCCchHHHHH-HHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcC-CCCCCCC
Q psy11559 80 CAPHRAAKLA-AALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCL-DGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~l-a~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~-Da~~~~~ 136 (189)
++-|| ..+ |.+|+ ..++++|++...++-.+.|++.+|+....+... |+++++-
T Consensus 206 cGTGg--iLiEagl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 206 CGTGG--ILIEAGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred CCccH--HHHhhhhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 66666 333 44553 689999999999999999999999887655544 9988763
No 139
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=79.18 E-value=5.9 Score=31.22 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=40.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
++.|.-+.+++.. ...++++|+++.-++..++++.+.+..++.+...|+..+
T Consensus 54 ~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 105 (224)
T TIGR01983 54 CGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL 105 (224)
T ss_pred CCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence 7778766666653 246999999999999999999988876677777776654
No 140
>KOG1663|consensus
Probab=78.68 E-value=6.2 Score=32.34 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=45.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~ 132 (189)
.--|-.+...|..+...|+|+|+|+++.=.+.-.+..++.|+.. |.+...++.
T Consensus 82 vfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 82 VFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred cccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence 66777778888888889999999999999999999999999864 777777775
No 141
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=78.54 E-value=3.3 Score=35.84 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=40.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
||-|.=|..||... ..|+|+|+++.=++..++|++.-|+.|+.....|+.++
T Consensus 205 cG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 205 CGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp -TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred ecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 88888888888653 58999999999999999999999999999998877554
No 142
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=78.25 E-value=8.5 Score=32.51 Aligned_cols=55 Identities=20% Similarity=0.119 Sum_probs=49.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~ 136 (189)
++=||=+..+|+.. ..+|+++++|++=.+..+++++..|+. +|.+...|=+.+..
T Consensus 81 CGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 81 CGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred CChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 88999888999876 469999999999999999999999998 89999998887654
No 143
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=76.47 E-value=9.5 Score=30.10 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=40.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDG 131 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da 131 (189)
++.|.-|..+++. ...++++|+++.-++..++++...+. .++.+...|.
T Consensus 72 cG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 121 (230)
T PRK07580 72 CGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121 (230)
T ss_pred CCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc
Confidence 8899888788764 24699999999999999999998887 4677777774
No 144
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=76.34 E-value=2 Score=29.91 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=23.0
Q ss_pred CCchHHHHHHHhcCCCc--EEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCCCCCCcHHHHHHHHhhC-CcEEE
Q psy11559 81 APHRAAKLAAALMKNTG--VLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYGKPEENEAVVNYALRKR-DVKLV 156 (189)
Q Consensus 81 APGgKT~~la~~~~~~g--~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~eENE~vV~~~L~~~-~~~l~ 156 (189)
+-|.-|..|++.+.+.+ +++++|..+. .+..++.+++.++. +++++..|.. +.+..+.... ++-.+
T Consensus 6 ~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~---------~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 6 YSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSP---------DFLPSLPDGPIDLIFI 75 (106)
T ss_dssp ---------------------EEEESS-------------GGG-BTEEEEES-TH---------HHHHHHHH--EEEEEE
T ss_pred ccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcH---------HHHHHcCCCCEEEEEE
Confidence 35777888888877654 7999999997 44555666667765 5889988873 3455554233 66666
Q ss_pred ecC
Q psy11559 157 PTG 159 (189)
Q Consensus 157 ~~~ 159 (189)
+.+
T Consensus 76 Dg~ 78 (106)
T PF13578_consen 76 DGD 78 (106)
T ss_dssp ES-
T ss_pred CCC
Confidence 643
No 145
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=76.17 E-value=4.2 Score=35.34 Aligned_cols=46 Identities=13% Similarity=-0.007 Sum_probs=33.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
|+|||=|-++++. .+.|+|+|..+ |...+. .-.+|+....|+-++.
T Consensus 220 AsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~ 265 (357)
T PRK11760 220 AAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFR 265 (357)
T ss_pred CCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccC
Confidence 9999999999875 35999999443 334432 2346888888887664
No 146
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=76.10 E-value=7.6 Score=32.01 Aligned_cols=51 Identities=6% Similarity=-0.134 Sum_probs=40.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
++.|+-+..++... .+.++++|+++.-+...++++.. ..++.+...|+...
T Consensus 61 cG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 61 SGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK 111 (263)
T ss_pred CCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC
Confidence 88999888887653 46999999999999888887654 24688888887654
No 147
>PLN02540 methylenetetrahydrofolate reductase
Probab=76.06 E-value=5 Score=37.12 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=42.6
Q ss_pred hHHHHHHHhcCCC-c-----EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 84 RAAKLAAALMKNT-G-----VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 84 gKT~~la~~~~~~-g-----~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
.+|..+|..+.+. | .+.|.|.+...++..-..++.+|++||-++.+|....
T Consensus 44 ~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~ 100 (565)
T PLN02540 44 DLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPHG 100 (565)
T ss_pred HHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 3688888777654 3 6899999999998888888999999999999997653
No 148
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=75.80 E-value=5.4 Score=31.40 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=39.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+++|.-+.+++.... ...++++|+++..++..++++. .++.++..|....+
T Consensus 43 ~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~ 93 (240)
T TIGR02072 43 CGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP 93 (240)
T ss_pred CCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC
Confidence 789998999988754 5679999999998887777654 36777778877654
No 149
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=75.69 E-value=6.4 Score=32.27 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=40.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
++||..|-+|++.-. ...|+++|-|+.=+..-+++ +.++....+|.+.+.+
T Consensus 39 CGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p 89 (257)
T COG4106 39 CGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKP 89 (257)
T ss_pred CCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCC
Confidence 899999999999875 58999999998766554332 3567888899998865
No 150
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=75.27 E-value=6.7 Score=35.20 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=43.6
Q ss_pred cCCchHHHHHHHh---cCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCCCCCC
Q psy11559 80 CAPHRAAKLAAAL---MKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQYGKPE 138 (189)
Q Consensus 80 AAPGgKT~~la~~---~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~e 138 (189)
||.|-=+...+.. .+..-+|+|+|.++.=...+++.+++-|. ..|+++..|.+.+..|+
T Consensus 195 AGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe 257 (448)
T PF05185_consen 195 AGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE 257 (448)
T ss_dssp -TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS
T ss_pred CCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC
Confidence 8888765444333 33445899999999989999888888887 46999999999986543
No 151
>KOG3191|consensus
Probab=74.35 E-value=11 Score=30.10 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=41.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLD 130 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~D 130 (189)
++.|-=|+++++...++...+|.|++++-++.-.+.++.-++. +.+++.|
T Consensus 52 ~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~td 101 (209)
T KOG3191|consen 52 CGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTD 101 (209)
T ss_pred CCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehh
Confidence 8999999999999988888999999999999988888877765 4444444
No 152
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=73.85 E-value=20 Score=30.57 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=32.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN 123 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n 123 (189)
++.|= +.||...-+-..++|+|+++.=++.-++|+++-|+..
T Consensus 171 cGSGI--LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 171 CGSGI--LAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred CChhH--HHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch
Confidence 55554 4455544455689999999999999999999999874
No 153
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=73.34 E-value=4.1 Score=35.78 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=35.6
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYGKP 137 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~ 137 (189)
.++++|++..=++.-+.|+++.|+.. |.....|++.+..+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~ 296 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP 296 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC
Confidence 48899999999999999999999974 88999999987653
No 154
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=73.17 E-value=8.6 Score=32.10 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=43.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~ 136 (189)
+|=||=+.++|+.. ...|+++.+|+.-.+..++.+++.|+.+ +.+...|.++++.
T Consensus 71 cGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 71 CGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp -TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred CCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 88999999999876 3589999999999999999999999974 8999999888654
No 155
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=72.85 E-value=3.9 Score=32.93 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=30.0
Q ss_pred cCCchHHHHHHHhc---CCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALM---KNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~---~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
.+-||.....|+++ +++|+|+++|++-.......-...-+. +.|++..+|..+.
T Consensus 41 i~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~-~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 41 IAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMS-PRITFIQGDSIDP 97 (206)
T ss_dssp -TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSST
T ss_pred cCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcccc-CceEEEECCCCCH
Confidence 89999988777554 578999999997655543333223332 5688888888753
No 156
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=71.62 E-value=9.4 Score=33.47 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=39.8
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|.|+-+.+++... ...|+++|+|+..++..+++++. + ++.+...|...+
T Consensus 176 cG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~l 225 (383)
T PRK11705 176 CGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRDL 225 (383)
T ss_pred CCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhhc
Confidence 99999999998865 35899999999999999998853 3 366667776554
No 157
>PRK06922 hypothetical protein; Provisional
Probab=71.35 E-value=12 Score=35.39 Aligned_cols=54 Identities=9% Similarity=0.013 Sum_probs=41.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||+|.=+..+++.. +.+.++++|+|+.=++..++++...|. ++.+..+|+..++
T Consensus 427 CGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp 480 (677)
T PRK06922 427 AGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLS 480 (677)
T ss_pred CCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCc
Confidence 78886666777765 457999999999999999888776664 5777778876643
No 158
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=70.84 E-value=9.1 Score=31.11 Aligned_cols=47 Identities=23% Similarity=0.184 Sum_probs=35.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|.|.=+..++... +.+.|+++|+|+.-++..+++ ++.+...|+..+
T Consensus 38 cG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~ 84 (255)
T PRK14103 38 CGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDW 84 (255)
T ss_pred CCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhC
Confidence 88998888888875 357999999999887766542 356677787664
No 159
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=70.55 E-value=27 Score=29.56 Aligned_cols=44 Identities=18% Similarity=0.008 Sum_probs=31.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN 123 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n 123 (189)
.+-|+=-+.||+..-+-+.|+|+|+++.=++..++|++.-|+..
T Consensus 168 vG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 168 VGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp ES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred eCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 34443344454444445689999999999999999999999875
No 160
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=70.43 E-value=11 Score=32.37 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=40.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~~ 135 (189)
+|.|.=+..++.. .+.|+++|.++..++..+++.+..+. .++.+.+.|+..++
T Consensus 140 CG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~ 193 (322)
T PLN02396 140 CGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA 193 (322)
T ss_pred CCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh
Confidence 8888877777652 36899999999999999988765544 46888888876653
No 161
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=70.07 E-value=0.91 Score=31.11 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=36.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
++.|.=+..+++.. +.+.++++|+|+.-+...++++...+..+......+...
T Consensus 5 cG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 57 (99)
T PF08242_consen 5 CGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLD 57 (99)
T ss_dssp TTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS
T ss_pred ccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCC
Confidence 46676677777765 468999999999999999999999887655555544443
No 162
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=69.52 E-value=14 Score=29.41 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=39.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
+|.|.-+..++.. ...++++|+++..++..++++...+. ++.+...|...+
T Consensus 57 ~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 107 (233)
T PRK05134 57 CGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEEL 107 (233)
T ss_pred CCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHh
Confidence 7788877777764 25799999999999999999988876 456666665544
No 163
>PRK06202 hypothetical protein; Provisional
Probab=69.14 E-value=9.7 Score=30.46 Aligned_cols=42 Identities=21% Similarity=0.068 Sum_probs=32.1
Q ss_pred cCCchHHHHHHHhcCC---CcEEEEEcCChHHHHHHHHHHHHhCC
Q psy11559 80 CAPHRAAKLAAALMKN---TGVLFANDVSKERSKAIVGNFHRLGV 121 (189)
Q Consensus 80 AAPGgKT~~la~~~~~---~g~v~A~D~~~~Rl~~l~~~l~r~g~ 121 (189)
||+|.=|..|+..+.. ...|+++|+++.=++..+++....++
T Consensus 69 cG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~ 113 (232)
T PRK06202 69 CGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV 113 (232)
T ss_pred cCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC
Confidence 8999878888876533 34899999999998888777654444
No 164
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=69.03 E-value=5.2 Score=32.22 Aligned_cols=82 Identities=22% Similarity=0.193 Sum_probs=36.4
Q ss_pred cCCc-hHHHHHHHhc---CCCc--EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC-C
Q psy11559 80 CAPH-RAAKLAAALM---KNTG--VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR-D 152 (189)
Q Consensus 80 AAPG-gKT~~la~~~---~~~g--~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~-~ 152 (189)
+||| |||-.|.+-. ..+| .|+++=-.-.|-+ ....++.+-.---+.+...+..+ .|-=++++|+++ +
T Consensus 12 ~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~e-t~~l~~gLe~iP~~~i~y~g~~~-----~E~DldaiL~R~P~ 85 (211)
T PF02702_consen 12 AAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPE-TEALLEGLEVIPRKKIEYRGRTL-----EEMDLDAILARRPQ 85 (211)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HH-HHHHHCTS-B---EEEEETTEEE-----EE--HHHHHHH--S
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHH-HHHHHcCCCcCCCeeEeeCCEec-----ccCCHHHHHhcCCC
Confidence 7899 9999886543 2345 4555422222332 23333222211122223333333 345578999988 9
Q ss_pred cEEEecCCCCCCCCc
Q psy11559 153 VKLVPTGLDFGTEGF 167 (189)
Q Consensus 153 ~~l~~~~~~~~~~g~ 167 (189)
+.|++---.-..||.
T Consensus 86 vvLVDELAHtN~pgs 100 (211)
T PF02702_consen 86 VVLVDELAHTNAPGS 100 (211)
T ss_dssp EEEES-TT-B--TT-
T ss_pred EEEeCcccccCCCCC
Confidence 999885332234454
No 165
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=68.64 E-value=12 Score=30.16 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=34.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
||+|.-|.+++.. ...++++|+++..++..+++.. .+...+.|+..++
T Consensus 51 cG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~ 98 (251)
T PRK10258 51 CGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLP 98 (251)
T ss_pred CCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCc
Confidence 8999888887763 3689999999998887776642 2344566666543
No 166
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=67.91 E-value=12 Score=31.12 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=37.7
Q ss_pred HHHHHHhcCCC-c-----EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 86 AKLAAALMKNT-G-----VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 86 T~~la~~~~~~-g-----~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|..++..+.+. | .+.|.|.+...++..-..+..+|++||-++.+|...
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~ 99 (272)
T TIGR00676 46 TVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPK 99 (272)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 55555555422 3 688999998889888888999999999999999874
No 167
>PRK10742 putative methyltransferase; Provisional
Probab=67.89 E-value=12 Score=31.03 Aligned_cols=51 Identities=10% Similarity=-0.065 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHh------CC---CeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRL------GV---INSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~------g~---~nv~~~~~Da~~ 133 (189)
||-|.=+..+|.+ .+.|+++|.|+.=...|+++++|+ +. .++.+...|+..
T Consensus 97 AGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 97 AGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred CCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 8888877777775 357999999999999999999997 43 568888888754
No 168
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=67.36 E-value=18 Score=32.33 Aligned_cols=53 Identities=9% Similarity=-0.067 Sum_probs=40.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
+|.|+-+..++... ...++++|+|+.-++..+++....+ .++.+...|....+
T Consensus 275 cG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~ 327 (475)
T PLN02336 275 CGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT 327 (475)
T ss_pred ccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC
Confidence 89999888888765 3589999999998888887765333 25788888876543
No 169
>PRK05973 replicative DNA helicase; Provisional
Probab=67.22 E-value=12 Score=30.72 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=27.7
Q ss_pred cCCc-hHHHHHHHhcC------CCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALMK------NTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~~------~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
+.|| |||+...+.+. .++.+++.|-++ ..+.+++..+|+.
T Consensus 71 G~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~---~~i~~R~~s~g~d 117 (237)
T PRK05973 71 ARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE---QDVRDRLRALGAD 117 (237)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH---HHHHHHHHHcCCC
Confidence 8889 99997665542 234577777774 5666777778864
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=67.00 E-value=5 Score=32.70 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=30.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHH-HHHHHH--HhCCCeEE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKA-IVGNFH--RLGVINSV 125 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~-l~~~l~--r~g~~nv~ 125 (189)
|++|+=|..+++. +-+.|+|+|++..-+.. ++++.+ .++..|++
T Consensus 84 ~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~ 130 (228)
T TIGR00478 84 SSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR 130 (228)
T ss_pred cCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc
Confidence 9999999988875 34689999999976653 444432 23444444
No 171
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=66.94 E-value=5.9 Score=34.27 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=31.6
Q ss_pred hccCceeeeCccchhh------------------cCCchHHHHHHHhcCCCcEEEEEcCCh
Q psy11559 64 YLGGHYILQGASKYWI------------------CAPHRAAKLAAALMKNTGVLFANDVSK 106 (189)
Q Consensus 64 ~~~G~~~vQD~sS~l~------------------AAPGgKT~~la~~~~~~g~v~A~D~~~ 106 (189)
|..|.|.++.++.-.+ ..|||||.+|+++-. ...|.++|.+-
T Consensus 203 ~s~glfLVhsEt~~~pYva~RPFRVNAGaVhaYv~~pgg~T~YLsEL~s-G~eVlvVd~~G 262 (344)
T PRK02290 203 SSRGMFLVHAETEENPYVASRPFRVNAGAVHAYVRVPGDKTRYLSELRS-GDEVLVVDADG 262 (344)
T ss_pred cCCcEEEEecccccCCCccCCCeeEecCcceeEEEcCCCcchhhHhhcC-CCEEEEEeCCC
Confidence 6677788877765444 789999999999854 34788888653
No 172
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=66.93 E-value=24 Score=29.50 Aligned_cols=52 Identities=8% Similarity=-0.145 Sum_probs=42.8
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
+++|.=+..++... +++.+++.|. +.-++..++++++.|+. +|.+...|+.+
T Consensus 158 ~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 158 GGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred CchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence 78887777787775 4578999997 67889999999999986 58999999864
No 173
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=66.80 E-value=10 Score=30.83 Aligned_cols=53 Identities=6% Similarity=-0.088 Sum_probs=35.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHH------------HHhCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNF------------HRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l------------~r~g~~nv~~~~~Da~~~~ 135 (189)
+|-|-=..+||+. .-.|+++|+|+.=++...+.. ++....+|.+.++|.-.++
T Consensus 52 CGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 52 CGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 6555556666653 226999999998888764421 1222336889999988774
No 174
>PRK00811 spermidine synthase; Provisional
Probab=66.53 E-value=12 Score=31.21 Aligned_cols=54 Identities=4% Similarity=-0.027 Sum_probs=40.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhC-----CCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLG-----VINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g-----~~nv~~~~~Da~~~ 134 (189)
+|-|+-+..++.. .+-..|+++|+++.-++..++.+..++ -.++.++..|++.+
T Consensus 85 ~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~ 143 (283)
T PRK00811 85 GGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF 143 (283)
T ss_pred cCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH
Confidence 6666665566543 234589999999999999999998764 23689999998754
No 175
>COG3911 Predicted ATPase [General function prediction only]
Probab=66.24 E-value=4.2 Score=31.48 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.5
Q ss_pred cCCc-hHHHHHHHhcCCCcEEEEEcC
Q psy11559 80 CAPH-RAAKLAAALMKNTGVLFANDV 104 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~~g~v~A~D~ 104 (189)
-+|| |||+.|+++.. .|..+.-+.
T Consensus 16 GgpGaGKTtLL~aLa~-~Gfatvee~ 40 (183)
T COG3911 16 GGPGAGKTTLLAALAR-AGFATVEEA 40 (183)
T ss_pred CCCCCcHHHHHHHHHH-cCceeeccc
Confidence 4666 89999999875 577665543
No 176
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=66.03 E-value=15 Score=30.49 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=46.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~ 136 (189)
||-|.=...+|+...+ ..|+++|+.+.=.+..++|++--++. +|.+.+.|...+.+
T Consensus 53 aG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 53 AGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred CCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 8888888888877543 89999999999999999999987765 69999999876543
No 177
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=65.95 E-value=34 Score=27.94 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=49.6
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCCC--------------------------------------C
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYGK--------------------------------------P 137 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~--------------------------------------~ 137 (189)
..++|.|++++=++...+++++.++. .+.+..+|+...-. |
T Consensus 41 ~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQP 120 (226)
T COG2384 41 STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQP 120 (226)
T ss_pred ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEECC
Confidence 47899999999999999999999975 58888888843111 8
Q ss_pred CCcHHHHHHHHhhCCcEEEe
Q psy11559 138 EENEAVVNYALRKRDVKLVP 157 (189)
Q Consensus 138 eENE~vV~~~L~~~~~~l~~ 157 (189)
.-|+.-++.+|..+.+++..
T Consensus 121 n~~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 121 NIHTYELREWLSANSYEIKA 140 (226)
T ss_pred CCCHHHHHHHHHhCCceeee
Confidence 88889999999888766655
No 178
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=65.56 E-value=12 Score=31.35 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCC-c-----EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 85 AAKLAAALMKNT-G-----VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 85 KT~~la~~~~~~-g-----~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|..++..+..+ | .+.|.|.+...++..-..+..+|++||-++.+|...
T Consensus 46 ~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~ 100 (281)
T TIGR00677 46 LTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPH 100 (281)
T ss_pred hHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 355566555422 3 688999998888777777889999999999999854
No 179
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=65.41 E-value=14 Score=31.66 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=38.8
Q ss_pred cCCchHHHHHHHhcCCC---cEEEEEcCChHHHHHHHHHHHHhCCCeEEE--EcCCC
Q psy11559 80 CAPHRAAKLAAALMKNT---GVLFANDVSKERSKAIVGNFHRLGVINSVV--TCLDG 131 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~---g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~--~~~Da 131 (189)
||-|-||.+|.+.+... -.-+++|+|..-|+...+++..-.+..+.+ +++|.
T Consensus 85 sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy 141 (319)
T TIGR03439 85 SGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTY 141 (319)
T ss_pred CCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecH
Confidence 99999999998877532 358999999999988888887333444444 55544
No 180
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.85 E-value=13 Score=26.33 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=27.3
Q ss_pred chHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe
Q psy11559 83 HRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN 123 (189)
Q Consensus 83 GgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n 123 (189)
|--+.++|..++ .+|++.|.++.|++.+ +++|.+.
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~----~~~Ga~~ 37 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELA----KELGADH 37 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHH----HHTTESE
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHH----Hhhcccc
Confidence 455778888876 8999999999998765 4688653
No 181
>KOG0822|consensus
Probab=64.32 E-value=17 Score=33.62 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=57.2
Q ss_pred cCCc---hHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCCCCC-CCcHHHHHHHHhhC-Cc
Q psy11559 80 CAPH---RAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQYGKP-EENEAVVNYALRKR-DV 153 (189)
Q Consensus 80 AAPG---gKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~-eENE~vV~~~L~~~-~~ 153 (189)
||.| -++...|+....+-+++|+|.+++-+-.|+. .+..+- ..|+++..|-|++..| |--.=.|..+|-.. |=
T Consensus 376 aGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDN 454 (649)
T KOG0822|consen 376 AGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDN 454 (649)
T ss_pred CCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCc
Confidence 7777 5677888887777789999999999988876 343333 3599999999999987 44445567777766 54
Q ss_pred EEEe
Q psy11559 154 KLVP 157 (189)
Q Consensus 154 ~l~~ 157 (189)
||-|
T Consensus 455 ELSP 458 (649)
T KOG0822|consen 455 ELSP 458 (649)
T ss_pred cCCH
Confidence 5433
No 182
>PRK05599 hypothetical protein; Provisional
Probab=63.92 E-value=44 Score=26.65 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 87 KLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 87 ~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
..+|..+.....|+..+.+..+++.+.+.++..|-..+.++..|.++. +.-+..++.+.+.+
T Consensus 14 ~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~---~~v~~~~~~~~~~~ 75 (246)
T PRK05599 14 GEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL---DTHRELVKQTQELA 75 (246)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCH---HHHHHHHHHHHHhc
Confidence 344443333457888899999999888888877755577788887653 34455555555543
No 183
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=62.66 E-value=12 Score=31.11 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=52.0
Q ss_pred CCChhhccCc---eeeeCccchhh--------cCCchH-------HHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhC
Q psy11559 59 GATPEYLGGH---YILQGASKYWI--------CAPHRA-------AKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLG 120 (189)
Q Consensus 59 ~~~~~~~~G~---~~vQD~sS~l~--------AAPGgK-------T~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g 120 (189)
.++-+|++|- +.-||....+- =.|||+ -..++.++..+-++.++|++++=...|+.++. +
T Consensus 55 ~ktgE~~~GI~RL~~a~~lpa~l~~yl~~i~~lN~~~~l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~ 132 (279)
T COG2961 55 EKTGEYEQGIARLWQAADLPAELEPYLDAVRQLNPGGGLRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--G 132 (279)
T ss_pred hhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCCCcccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--C
Confidence 3556777773 33355555443 334432 34555666777899999999999999999998 7
Q ss_pred CCeEEEEcCCCCC
Q psy11559 121 VINSVVTCLDGRQ 133 (189)
Q Consensus 121 ~~nv~~~~~Da~~ 133 (189)
..+|.+...||-.
T Consensus 133 d~~vrv~~~DG~~ 145 (279)
T COG2961 133 DRRVRVLRGDGFL 145 (279)
T ss_pred CcceEEEecCcHH
Confidence 7789999999843
No 184
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=61.60 E-value=28 Score=29.32 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=46.3
Q ss_pred cCCchHHH-HHHHhcCCCcEEEEEcCChHHHHHHHHHHH-HhCCC-eEEEEcCCCCCCCC-----------------CCC
Q psy11559 80 CAPHRAAK-LAAALMKNTGVLFANDVSKERSKAIVGNFH-RLGVI-NSVVTCLDGRQYGK-----------------PEE 139 (189)
Q Consensus 80 AAPGgKT~-~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~-r~g~~-nv~~~~~Da~~~~~-----------------~eE 139 (189)
+||=-=|+ .|+........+++.|+++...+.-++.++ .+|+. .+.+...|+..... .++
T Consensus 129 SGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~ 208 (276)
T PF03059_consen 129 SGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEP 208 (276)
T ss_dssp --SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----S
T ss_pred CCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccch
Confidence 66655565 445444444578999999999999998888 56665 47888888765431 458
Q ss_pred cHHHHHHHHhhC--CcEEEe
Q psy11559 140 NEAVVNYALRKR--DVKLVP 157 (189)
Q Consensus 140 NE~vV~~~L~~~--~~~l~~ 157 (189)
=++|++.+.+.- +..++-
T Consensus 209 K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 209 KEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp HHHHHHHHHHHS-TTSEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEE
Confidence 888888887753 554443
No 185
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=61.55 E-value=24 Score=27.96 Aligned_cols=48 Identities=4% Similarity=-0.084 Sum_probs=36.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+|.|.=+..++.... .+.++++|+|+.-++..++++. ++.+...|+..
T Consensus 52 CG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~-----~~~~~~~d~~~ 99 (204)
T TIGR03587 52 ANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP-----NINIIQGSLFD 99 (204)
T ss_pred cCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC-----CCcEEEeeccC
Confidence 889988888887654 4689999999999998887642 34555666554
No 186
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=61.37 E-value=31 Score=29.77 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=41.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
||.|.=+..++... +...|+++|+|+.-++..++++++.++. ..+...|..
T Consensus 205 CG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~ 255 (342)
T PRK09489 205 CGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVF 255 (342)
T ss_pred cCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccc
Confidence 88998888888764 3468999999999999999999998875 355556653
No 187
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=61.09 E-value=6.4 Score=34.21 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=31.9
Q ss_pred hccCceeeeCccchhh------------------cCCchHHHHHHHhcCCCcEEEEEcCCh
Q psy11559 64 YLGGHYILQGASKYWI------------------CAPHRAAKLAAALMKNTGVLFANDVSK 106 (189)
Q Consensus 64 ~~~G~~~vQD~sS~l~------------------AAPGgKT~~la~~~~~~g~v~A~D~~~ 106 (189)
|..|.|.++.++.-.+ ..|||||..|+++-. ...|.++|.+-
T Consensus 213 ~s~glfLVhsEt~~~pYva~RPFRVNAGaVHaYv~~pg~kT~YLSEL~s-G~~VlvVd~~G 272 (354)
T PF01959_consen 213 SSSGLFLVHSETHESPYVASRPFRVNAGAVHAYVLMPGGKTRYLSELRS-GDEVLVVDADG 272 (354)
T ss_pred cCceEEEEEeccccCCCCCCCCceEecCcceeEEEcCCCceeehhhhcC-CCEEEEEeCCC
Confidence 5667777877766554 889999999999854 34788888663
No 188
>KOG2078|consensus
Probab=60.39 E-value=7.1 Score=34.95 Aligned_cols=62 Identities=21% Similarity=0.117 Sum_probs=43.6
Q ss_pred eeCccchhh---cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC--eEEEEcCCCCCCC
Q psy11559 71 LQGASKYWI---CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI--NSVVTCLDGRQYG 135 (189)
Q Consensus 71 vQD~sS~l~---AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~--nv~~~~~Da~~~~ 135 (189)
+|+++..+. |+=|-=+.-++. . ..+|+|||.++.=++.|+.|++--.+. +|++.+.||..|-
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~k--K-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAK--K-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhh--c-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 566666554 444432222222 1 368999999999999999999865553 5999999998875
No 189
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=60.27 E-value=36 Score=29.89 Aligned_cols=52 Identities=8% Similarity=-0.169 Sum_probs=42.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC---eEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI---NSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~---nv~~~~~Da~ 132 (189)
+|.|-=+..++... +...|+++|+|+.=++..++|++..+.. ++.+...|+.
T Consensus 237 CGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 237 CGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 291 (378)
T ss_pred ccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc
Confidence 88998777777764 4679999999999999999999887743 6777777764
No 190
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=60.11 E-value=42 Score=27.23 Aligned_cols=48 Identities=8% Similarity=-0.002 Sum_probs=35.7
Q ss_pred hHHHHHHHhcC-CCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCC
Q psy11559 84 RAAKLAAALMK-NTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDG 131 (189)
Q Consensus 84 gKT~~la~~~~-~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da 131 (189)
.-|..||.... ..|+++|+-.++..+...++.+..+|+.+ ++++..|+
T Consensus 56 ~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 56 STTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 34666655543 35799999999999999999999999875 46666553
No 191
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=59.93 E-value=33 Score=29.33 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=39.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-----CeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-----INSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-----~nv~~~~~Da~~ 133 (189)
+|.|.-+..++.. ...|+++|+|+.=++..+++++..+. .++.....|...
T Consensus 153 cGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 153 CGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 8899888888864 25899999999999999999887632 345666666543
No 192
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=59.83 E-value=27 Score=28.73 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=46.0
Q ss_pred cCCchHHHHHHHhcCCC--cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC------------CCCcHHHHH
Q psy11559 80 CAPHRAAKLAAALMKNT--GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK------------PEENEAVVN 145 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~--g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~------------~eENE~vV~ 145 (189)
+|.|.=|..++...... ..++++|+|+.=++..+++ ..++.+..+|+..++. ...+-..+.
T Consensus 94 cG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~~e~~ 168 (272)
T PRK11088 94 CGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFADQSLDAIIRIYAPCKAEELA 168 (272)
T ss_pred CcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCcCCceeEEEEecCCCCHHHHH
Confidence 88888888888876533 3799999999877766543 2456777778776542 223445566
Q ss_pred HHHhhCC
Q psy11559 146 YALRKRD 152 (189)
Q Consensus 146 ~~L~~~~ 152 (189)
.+|+..+
T Consensus 169 rvLkpgG 175 (272)
T PRK11088 169 RVVKPGG 175 (272)
T ss_pred hhccCCC
Confidence 6777653
No 193
>KOG1541|consensus
Probab=59.80 E-value=16 Score=30.14 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=28.7
Q ss_pred eeeeCccchhh----cCCchHHHHHHHhc----------CCCc-EEEEEcCChHHHHHHHH
Q psy11559 69 YILQGASKYWI----CAPHRAAKLAAALM----------KNTG-VLFANDVSKERSKAIVG 114 (189)
Q Consensus 69 ~~vQD~sS~l~----AAPGgKT~~la~~~----------~~~g-~v~A~D~~~~Rl~~l~~ 114 (189)
++||-+=+.-+ |.||+|+.+|.+.- ...| ..+.+|+|+.=|+.-.+
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence 44554444333 77777766665442 2344 57899999999976663
No 194
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=59.69 E-value=19 Score=28.83 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=38.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
+|-|-=|.+||..- ..++|+|+++.=++..++++.. ..+|.+...|-..+.+
T Consensus 52 Cs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 52 CSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWP 103 (201)
T ss_dssp -TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---
T ss_pred CCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCC
Confidence 78888888888764 4899999999999999998874 4689999999877644
No 195
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=59.59 E-value=17 Score=34.54 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=34.9
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCCCC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQYG 135 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~~~ 135 (189)
..|+++|+++.=++..++|+++.|+.+ |.+.+.|+.+++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~ 296 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLK 296 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcc
Confidence 379999999999999999999999975 888899988764
No 196
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=59.46 E-value=31 Score=27.36 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=41.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
|+.|+=..-.++ .+-..++.+|.|..=++.|++|++.+|+. ++.++..|+..
T Consensus 52 AGSGaLGlEAlS--RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 52 AGSGALGLEALS--RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CCccHhHHHHHh--CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 888865544443 33458999999999999999999999965 58888888863
No 197
>PF13245 AAA_19: Part of AAA domain
Probab=59.01 E-value=5.8 Score=26.41 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=20.3
Q ss_pred cCCc-hHHHHHHHhc----C----CCcEEEEEcCChHHHHHHHHHH
Q psy11559 80 CAPH-RAAKLAAALM----K----NTGVLFANDVSKERSKAIVGNF 116 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~----~~g~v~A~D~~~~Rl~~l~~~l 116 (189)
+.|| |||+.++.++ . +...|...=.+..=.+.|.+.+
T Consensus 17 g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 17 GPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 7888 9996655443 1 1224555544444445555555
No 198
>PRK11054 helD DNA helicase IV; Provisional
Probab=56.63 E-value=17 Score=34.54 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=33.7
Q ss_pred chhh-cCCc-hHHHHHHHhc----C----CCcEEEEEcCChHHHHHHHHHHH-HhCCCeEEE
Q psy11559 76 KYWI-CAPH-RAAKLAAALM----K----NTGVLFANDVSKERSKAIVGNFH-RLGVINSVV 126 (189)
Q Consensus 76 S~l~-AAPG-gKT~~la~~~----~----~~g~v~A~D~~~~Rl~~l~~~l~-r~g~~nv~~ 126 (189)
+.++ |+|| |||+-|.... . ....|.+.=.+..-...|++++. ++|..++.+
T Consensus 211 ~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~v 272 (684)
T PRK11054 211 SLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDITA 272 (684)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcEE
Confidence 3344 9999 9999886653 1 12357777667777788888875 477544443
No 199
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=56.29 E-value=27 Score=28.00 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=41.2
Q ss_pred cCCc-hHHHHHHHhc---CC--CcEEEEEcCCh-HHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 80 CAPH-RAAKLAAALM---KN--TGVLFANDVSK-ERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 80 AAPG-gKT~~la~~~---~~--~g~v~A~D~~~-~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
..|| |||+.|-.+. .+ +--|+.+|+.. .-.++++++ .|..-+.+..+++.- -+..=|.+.|+.+...+
T Consensus 20 Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH-~da~m~~~ai~~l~~~~ 94 (202)
T COG0378 20 GPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCH-LDASMNLEAIEELVLDF 94 (202)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccC-CcHHHHHHHHHHHhhcC
Confidence 5677 8999876543 22 23578889876 333444443 887766666665542 11234667777777665
No 200
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=55.84 E-value=54 Score=29.62 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=28.4
Q ss_pred cCCc-hHHHHHHHhcC------CCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALMK------NTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~~------~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
-.|| |||+..++.+. .++..++.|=+ ...+..+++++|+.
T Consensus 270 G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs---~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 270 GATGTGKTLLVSKFLENACANKERAILFAYEES---RAQLLRNAYSWGID 316 (484)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC---HHHHHHHHHHcCCC
Confidence 6677 99998776653 24567777766 45667778899874
No 201
>PLN02672 methionine S-methyltransferase
Probab=55.63 E-value=33 Score=34.36 Aligned_cols=53 Identities=11% Similarity=-0.051 Sum_probs=43.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC----------------CeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV----------------INSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~----------------~nv~~~~~Da~~ 133 (189)
+|.|-=+..++.... .+.|+|+|+|+.=++..++|+++.++ .+|.+++.|...
T Consensus 127 ~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~ 195 (1082)
T PLN02672 127 CGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG 195 (1082)
T ss_pred cchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh
Confidence 788877777777654 47999999999999999999998653 358888888654
No 202
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=55.29 E-value=29 Score=30.06 Aligned_cols=51 Identities=6% Similarity=-0.143 Sum_probs=37.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
++.|.=+..++.... .+.++++|+++.-++..+++.. ..++.+...|+..+
T Consensus 122 cGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l 172 (340)
T PLN02490 122 GGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL 172 (340)
T ss_pred cCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC
Confidence 788877777777654 3689999999998888777643 34566777777654
No 203
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=54.38 E-value=25 Score=29.02 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=33.5
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
.+.|.|.+...++..-..+..+|++|+.++.+|.....
T Consensus 64 Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~ 101 (274)
T cd00537 64 HLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGG 101 (274)
T ss_pred ecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCC
Confidence 68899999988888888889999999999999987654
No 204
>KOG1098|consensus
Probab=53.83 E-value=13 Score=34.87 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred eeeCccchhh--cCCchHHHHHHHhcCCCcEEEEEcCChHH
Q psy11559 70 ILQGASKYWI--CAPHRAAKLAAALMKNTGVLFANDVSKER 108 (189)
Q Consensus 70 ~vQD~sS~l~--AAPGgKT~~la~~~~~~g~v~A~D~~~~R 108 (189)
.+|...+.|- |||||=.-..++.|...+.|+++|+-+-+
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik 81 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK 81 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc
Confidence 3444444433 99999877777888888899999987643
No 205
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=53.55 E-value=13 Score=35.15 Aligned_cols=44 Identities=2% Similarity=0.099 Sum_probs=31.1
Q ss_pred chhh-cCCc-hHHHHHHHhc----CC----CcEEEEEcCChHHHHHHHHHHHHh
Q psy11559 76 KYWI-CAPH-RAAKLAAALM----KN----TGVLFANDVSKERSKAIVGNFHRL 119 (189)
Q Consensus 76 S~l~-AAPG-gKT~~la~~~----~~----~g~v~A~D~~~~Rl~~l~~~l~r~ 119 (189)
.+++ |+|| |||+-|...+ .. ...|.+.=.+.+-...|++++.++
T Consensus 17 ~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 17 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 3344 9999 9998765442 21 236888888888888899888764
No 206
>KOG4589|consensus
Probab=53.49 E-value=15 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDV 104 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~ 104 (189)
||||.=|-..-+..+++|.|.++|+
T Consensus 78 ~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 78 AAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred CCCChHHHHHHHhhCCCceEEEEee
Confidence 8999988777788888888888875
No 207
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=53.35 E-value=38 Score=28.61 Aligned_cols=51 Identities=18% Similarity=-0.085 Sum_probs=38.1
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC--eEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI--NSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~--nv~~~~~Da~ 132 (189)
|=.||=|.+.+. ++-..++++|.|..=++..++|++--|+. .+..+..|+-
T Consensus 132 sYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 132 SYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp -TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred CCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 889998887654 33337999999999999999999988865 6888888864
No 208
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=53.21 E-value=16 Score=30.13 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=32.6
Q ss_pred CchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 82 PHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 82 PGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||+ -..++.++..+-+++++|+|+.=.+.|++++.+ -++|.+...||-.
T Consensus 66 PGS-P~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~ 114 (245)
T PF04378_consen 66 PGS-PAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYE 114 (245)
T ss_dssp E-H-HHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHH
T ss_pred CCC-HHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhh
Confidence 443 456677788888999999999999999999886 3579999999854
No 209
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=52.77 E-value=17 Score=30.47 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=24.4
Q ss_pred cCCc-hHHHHHHHhcC----------CCcEEEEEcCChH-HHHHHHHHHHHhCC
Q psy11559 80 CAPH-RAAKLAAALMK----------NTGVLFANDVSKE-RSKAIVGNFHRLGV 121 (189)
Q Consensus 80 AAPG-gKT~~la~~~~----------~~g~v~A~D~~~~-Rl~~l~~~l~r~g~ 121 (189)
..|| |||+.+.+++. ..|.++-+|-... +.+++.+.++++|+
T Consensus 102 G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl 155 (310)
T TIGR02236 102 GEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGL 155 (310)
T ss_pred CCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 5566 89987765542 1356666665442 44455566666664
No 210
>KOG0820|consensus
Probab=52.19 E-value=38 Score=28.75 Aligned_cols=53 Identities=6% Similarity=-0.159 Sum_probs=39.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~ 135 (189)
-|+|.=|.-|.+. ..+|+|+|+++.=+..|.++.+-.-.. ...+..+|.-+.+
T Consensus 67 PGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 67 PGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 5566777777775 348999999999888888887644332 3788889887755
No 211
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=51.88 E-value=93 Score=26.21 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=44.0
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC--CCCCC--CCcHHHHHHHHhhC-C-cEE
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR--QYGKP--EENEAVVNYALRKR-D-VKL 155 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~--~~~~~--eENE~vV~~~L~~~-~-~~l 155 (189)
.+.|.|.+...+...-..+..+|+.|+..+.+|.. ..+.+ ....+.|+.+-+.+ + |.+
T Consensus 83 Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i 146 (291)
T COG0685 83 HLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDI 146 (291)
T ss_pred eecccCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEE
Confidence 58999999999999999999999999999999995 22223 34556666655455 5 444
No 212
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=51.81 E-value=14 Score=34.96 Aligned_cols=44 Identities=5% Similarity=0.117 Sum_probs=31.8
Q ss_pred chhh-cCCc-hHHHHHHHhc----C----CCcEEEEEcCChHHHHHHHHHHHHh
Q psy11559 76 KYWI-CAPH-RAAKLAAALM----K----NTGVLFANDVSKERSKAIVGNFHRL 119 (189)
Q Consensus 76 S~l~-AAPG-gKT~~la~~~----~----~~g~v~A~D~~~~Rl~~l~~~l~r~ 119 (189)
.+++ |+|| |||+-|...+ . +...|.|+=.+.+-.+.|++++.++
T Consensus 19 ~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 19 NLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4445 9999 9998775443 2 2346888888888888899988876
No 213
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=51.54 E-value=22 Score=30.95 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=29.1
Q ss_pred cCCc--hHHHHHHHhc--------------CCCcE--EEEE-cCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH--RAAKLAAALM--------------KNTGV--LFAN-DVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG--gKT~~la~~~--------------~~~g~--v~A~-D~~~~Rl~~l~~~l~r~g~~ 122 (189)
+|+| |||+.+..+. .+.|. .+.+ |-.+.=+++++..++++|++
T Consensus 95 ~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 95 YGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred ecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 6777 7998776541 23453 2333 44556679999999999987
No 214
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=50.66 E-value=32 Score=25.96 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=23.8
Q ss_pred cCCc-hHHHHHHHhc------CCCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM------KNTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~------~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+...+.+ +.+...++.|-+.. .+.++++++|+.
T Consensus 6 G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~---~~~~~~~~~g~~ 52 (187)
T cd01124 6 GGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPE---ELIENAESLGWD 52 (187)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHcCCC
Confidence 4678 8999765543 22345566666544 345566777764
No 215
>PRK01581 speE spermidine synthase; Validated
Probab=50.64 E-value=19 Score=31.58 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=37.2
Q ss_pred CcEEEEEcCChHHHHHHHH--HH---HHh--CCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhCCcEEEecCC
Q psy11559 96 TGVLFANDVSKERSKAIVG--NF---HRL--GVINSVVTCLDGRQYGKPEENEAVVNYALRKRDVKLVPTGL 160 (189)
Q Consensus 96 ~g~v~A~D~~~~Rl~~l~~--~l---~r~--g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~~~~l~~~~~ 160 (189)
-..|+++|+++.-++..++ .+ .+. .-.++.+...||..+-.... +++|+.++++..
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~---------~~YDVIIvDl~D 236 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS---------SLYDVIIIDFPD 236 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC---------CCccEEEEcCCC
Confidence 4689999999998888885 22 222 23479999999976531100 134888888643
No 216
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=50.14 E-value=8.3 Score=31.59 Aligned_cols=39 Identities=0% Similarity=-0.011 Sum_probs=23.8
Q ss_pred cCCc-hHHHHHHHhc----C----CCcEEEEEcCChHHHHHHHHHHHH
Q psy11559 80 CAPH-RAAKLAAALM----K----NTGVLFANDVSKERSKAIVGNFHR 118 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~----~~g~v~A~D~~~~Rl~~l~~~l~r 118 (189)
|+|| |||+.|+..+ . +.-.|++.=.+..=...|++++..
T Consensus 20 a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 20 AGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp E-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred eCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 8888 9999887643 1 223677776665545555555554
No 217
>PRK07677 short chain dehydrogenase; Provisional
Probab=49.38 E-value=66 Score=25.48 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=40.9
Q ss_pred CchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 82 PHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 82 PGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
-||=..+++..+...| .|++.+.+..+++.+.+.++..+ .++.++..|.++ ++.=++.++.+++++
T Consensus 10 s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~---~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 10 SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN---PEDVQKMVEQIDEKF 76 (252)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC---HHHHHHHHHHHHHHh
Confidence 3333344444443333 78889999988888887777655 357777888654 334455555555543
No 218
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.60 E-value=1e+02 Score=27.80 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=42.0
Q ss_pred cCCc-hHHHHHHHhcC---CCcE-E-EEEcCChHHHHHHHHHHHHhCCCe--EEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 80 CAPH-RAAKLAAALMK---NTGV-L-FANDVSKERSKAIVGNFHRLGVIN--SVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 80 AAPG-gKT~~la~~~~---~~g~-v-~A~D~~~~Rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
--|| ||||.|.+.+. .+++ + ++-|=| ...++-+.+|||+.. +.+. +|-|=+.|..-+++.
T Consensus 100 GdPGIGKSTLLLQva~~lA~~~~vLYVsGEES---~~QiklRA~RL~~~~~~l~l~---------aEt~~e~I~~~l~~~ 167 (456)
T COG1066 100 GDPGIGKSTLLLQVAARLAKRGKVLYVSGEES---LQQIKLRADRLGLPTNNLYLL---------AETNLEDIIAELEQE 167 (456)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcC---HHHHHHHHHHhCCCccceEEe---------hhcCHHHHHHHHHhc
Confidence 6788 99998877653 2333 2 333545 566777899999753 3322 456667777777655
Q ss_pred --CcEEEe
Q psy11559 152 --DVKLVP 157 (189)
Q Consensus 152 --~~~l~~ 157 (189)
++-++|
T Consensus 168 ~p~lvVID 175 (456)
T COG1066 168 KPDLVVID 175 (456)
T ss_pred CCCEEEEe
Confidence 776666
No 219
>PRK10490 sensor protein KdpD; Provisional
Probab=48.48 E-value=57 Score=31.88 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=42.3
Q ss_pred cCCc-hHHHHHHHhc---CCCc--EEEEE-cCC-hHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 80 CAPH-RAAKLAAALM---KNTG--VLFAN-DVS-KERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 80 AAPG-gKT~~la~~~---~~~g--~v~A~-D~~-~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
+||| |||..|.+.. ..+| .|++. |-| ..--..|-+.++.+-.+.+.... ..+ .|-=++.+|+++
T Consensus 31 ~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r~~t~~~~~~l~~~p~~~~~~~~---~~~-----~e~d~~~~l~~~ 102 (895)
T PRK10490 31 ACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGRKETAALLEGLTVLPPKRIHHRG---RHI-----SEFDLDAALARR 102 (895)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCCHHHHHHhcCCCcCCCeeEeECC---eec-----cccCHHHHHhCC
Confidence 7999 9999886543 2345 45554 433 22233344444333322222212 111 223358999988
Q ss_pred -CcEEEecCCCCCCCCcc
Q psy11559 152 -DVKLVPTGLDFGTEGFV 168 (189)
Q Consensus 152 -~~~l~~~~~~~~~~g~~ 168 (189)
++.|+|---.-..||..
T Consensus 103 p~~~lvdelah~n~~g~~ 120 (895)
T PRK10490 103 PALILMDELAHSNAPGSR 120 (895)
T ss_pred CCEEEEeccccCCCCCCC
Confidence 99998853332345543
No 220
>PRK07904 short chain dehydrogenase; Provisional
Probab=48.42 E-value=69 Score=25.71 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=42.8
Q ss_pred CCchHHHHHHHhcCCC-c-EEEEEcCChHH-HHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHh
Q psy11559 81 APHRAAKLAAALMKNT-G-VLFANDVSKER-SKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALR 149 (189)
Q Consensus 81 APGgKT~~la~~~~~~-g-~v~A~D~~~~R-l~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~ 149 (189)
|-||=-.++|..+-.+ | .|++.+.+..+ ++.+.+.++..|..++.++..|... ++.-++.++.+++
T Consensus 16 as~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~---~~~~~~~~~~~~~ 84 (253)
T PRK07904 16 GTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD---TDSHPKVIDAAFA 84 (253)
T ss_pred CCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC---hHHHHHHHHHHHh
Confidence 4454445566543223 3 78899998876 8877777777775578888888764 2333455666554
No 221
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=48.20 E-value=40 Score=28.37 Aligned_cols=74 Identities=9% Similarity=0.006 Sum_probs=50.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhC----CCeEEEEcCCCCCCCCCCCcHHHHHHHHhhCCcEE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLG----VINSVVTCLDGRQYGKPEENEAVVNYALRKRDVKL 155 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~~~~l 155 (189)
-+.||-+-.++... +--+++.+|+++.=++.-++.+.-+. -+++++...||.++ |+.+-+++|+.+
T Consensus 85 gGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~---------v~~~~~~fDvIi 154 (282)
T COG0421 85 GGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF---------LRDCEEKFDVII 154 (282)
T ss_pred CCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH---------HHhCCCcCCEEE
Confidence 66677665665543 34589999999999999888887665 35688999998643 233223348888
Q ss_pred EecCCCCC
Q psy11559 156 VPTGLDFG 163 (189)
Q Consensus 156 ~~~~~~~~ 163 (189)
++...+.|
T Consensus 155 ~D~tdp~g 162 (282)
T COG0421 155 VDSTDPVG 162 (282)
T ss_pred EcCCCCCC
Confidence 87654433
No 222
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=47.84 E-value=49 Score=26.43 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=37.9
Q ss_pred cchhh--cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCC---------------CeEEEEcCCCCCCC
Q psy11559 75 SKYWI--CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGV---------------INSVVTCLDGRQYG 135 (189)
Q Consensus 75 sS~l~--AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~---------------~nv~~~~~Da~~~~ 135 (189)
+..|. +|.|-=+..||+. | .|+|+|+|+.=++.+.. ..|+ .+|.+.++|...++
T Consensus 36 ~rvLd~GCG~G~da~~LA~~----G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQ----GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CeEEEeCCCchhHHHHHHhC----CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 34444 8888888888863 4 79999999998886432 2222 24778888886654
No 223
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=47.84 E-value=13 Score=26.37 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=26.7
Q ss_pred cchhh-cCCc-hHHHHHHHhcCC---------CcEEEEEcCChHH--HHHHHHHHHHhCCC
Q psy11559 75 SKYWI-CAPH-RAAKLAAALMKN---------TGVLFANDVSKER--SKAIVGNFHRLGVI 122 (189)
Q Consensus 75 sS~l~-AAPG-gKT~~la~~~~~---------~g~v~A~D~~~~R--l~~l~~~l~r~g~~ 122 (189)
...++ +.|| |||+.+..++.. ...++.++....+ -...++-++.++..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 65 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP 65 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc
Confidence 33334 5566 899988776642 4566666666655 34455555566643
No 224
>PRK04148 hypothetical protein; Provisional
Probab=47.01 E-value=1.2e+02 Score=22.64 Aligned_cols=71 Identities=8% Similarity=-0.091 Sum_probs=41.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC--------------CCCcHHHHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK--------------PEENEAVVN 145 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~--------------~eENE~vV~ 145 (189)
+|.|...+.....+ .-.|+|.|+++.+++..+++ + +.++..|-...+. |.|=..-+.
T Consensus 25 ~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 25 IGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred ecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 66776444333333 24899999999987766554 3 3566666655332 555444444
Q ss_pred HHHhhC--CcEEEecC
Q psy11559 146 YALRKR--DVKLVPTG 159 (189)
Q Consensus 146 ~~L~~~--~~~l~~~~ 159 (189)
.+-++. ++-+.++.
T Consensus 96 ~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 96 ELAKKINVPLIIKPLS 111 (134)
T ss_pred HHHHHcCCCEEEEcCC
Confidence 444444 55555553
No 225
>PRK05867 short chain dehydrogenase; Provisional
Probab=46.50 E-value=77 Score=25.12 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=39.9
Q ss_pred CchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 82 PHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 82 PGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
-||=-.+++..+-..| .|+..+.+..+++.+.+.++..| .++..+..|.++ ++.-++.++.+.++
T Consensus 18 s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~---~~~~~~~~~~~~~~ 83 (253)
T PRK05867 18 STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ---HQQVTSMLDQVTAE 83 (253)
T ss_pred CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC---HHHHHHHHHHHHHH
Confidence 3433444444443344 78889999999988888887766 346777788654 23333444444444
No 226
>PRK07890 short chain dehydrogenase; Provisional
Probab=46.36 E-value=92 Score=24.55 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=44.0
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
|-||=..+++..+-.+| .|+..|.++.+++.+...+...|. ++..+..|.++ ++.-+.+++.+.+++
T Consensus 13 a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~---~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 13 VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITD---EDQCANLVALALERF 80 (258)
T ss_pred CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCC---HHHHHHHHHHHHHHc
Confidence 34444455555544344 799999999998888888777664 46778888654 344555666665554
No 227
>PHA03412 putative methyltransferase; Provisional
Probab=46.06 E-value=37 Score=27.99 Aligned_cols=49 Identities=6% Similarity=-0.086 Sum_probs=37.2
Q ss_pred cCCchHHHHHHHhcC--CCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMK--NTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~--~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|+.|.=+..++..|. ....|+|+|+++.=++..++|+. ++.+.+.|...
T Consensus 58 ~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~ 108 (241)
T PHA03412 58 AGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALT 108 (241)
T ss_pred ChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhc
Confidence 788887777877653 34689999999998888887753 35666777754
No 228
>PRK07831 short chain dehydrogenase; Provisional
Probab=45.97 E-value=1e+02 Score=24.47 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=33.7
Q ss_pred cEEEEEcCChHHHHHHHHHHHH-hCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 97 GVLFANDVSKERSKAIVGNFHR-LGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r-~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
..|+..|.+..+++...+.++. +|..++..+..|.++ ++.=+.+++.+.++
T Consensus 43 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~~~ 94 (262)
T PRK07831 43 ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS---EAQVDALIDAAVER 94 (262)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC---HHHHHHHHHHHHHH
Confidence 3688899999988887777766 565567788888754 22333444444444
No 229
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=45.88 E-value=66 Score=26.47 Aligned_cols=53 Identities=8% Similarity=-0.106 Sum_probs=37.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhC----CCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLG----VINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g----~~nv~~~~~Da~~ 133 (189)
++-|+-+..++... ....++++|+++.=++..++++..++ -.++.+...|+..
T Consensus 81 ~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~ 137 (270)
T TIGR00417 81 GGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK 137 (270)
T ss_pred CCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH
Confidence 55555444555432 24589999999999999999887654 2357777888754
No 230
>PRK04328 hypothetical protein; Provisional
Probab=45.73 E-value=44 Score=27.21 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=26.7
Q ss_pred cCCc-hHHHHHHHhc------CCCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM------KNTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~------~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+...+.+ +..+..++.|-++.. +.++++++|..
T Consensus 30 G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~---i~~~~~~~g~d 76 (249)
T PRK04328 30 GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQ---VRRNMRQFGWD 76 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHH---HHHHHHHcCCC
Confidence 5566 7988654433 234667777777665 67778888863
No 231
>PHA03411 putative methyltransferase; Provisional
Probab=45.70 E-value=59 Score=27.43 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=36.2
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
++.|.=+.+++.... ...|+++|+++.=++..++++ .++.+.+.|+..+
T Consensus 73 cGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~ 121 (279)
T PHA03411 73 AGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEF 121 (279)
T ss_pred CCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhh
Confidence 888877777776543 358999999998777766653 3577888888764
No 232
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=45.57 E-value=26 Score=29.60 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=24.8
Q ss_pred cCCc-hHHHHHHHhcCC----------CcEEEEEcCChH-HHHHHHHHHHHhCC
Q psy11559 80 CAPH-RAAKLAAALMKN----------TGVLFANDVSKE-RSKAIVGNFHRLGV 121 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~----------~g~v~A~D~~~~-Rl~~l~~~l~r~g~ 121 (189)
..|| |||+...+++-+ .+.++=+|-... +.+++.++++++|.
T Consensus 109 G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~ 162 (317)
T PRK04301 109 GEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGL 162 (317)
T ss_pred CCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCC
Confidence 4556 899877666421 235555565442 45666666777765
No 233
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=44.46 E-value=31 Score=29.36 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=26.1
Q ss_pred cCCc-hHHHHHHHhc----------CCCcEEEEEcCChH-HHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM----------KNTGVLFANDVSKE-RSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~----------~~~g~v~A~D~~~~-Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+...+++ +..|.++=+|-... +.+++.+.++++|+.
T Consensus 103 G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d 157 (313)
T TIGR02238 103 GEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVD 157 (313)
T ss_pred CCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 5555 8998776543 12356655665443 556666677777764
No 234
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=44.21 E-value=25 Score=29.79 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=34.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 136 (189)
|+|||=|-||... .-.|+|+|.-+ |.+++.--| .|.-...||-+|.+
T Consensus 220 AcPGGWTyqLVkr---~m~V~aVDng~-----ma~sL~dtg--~v~h~r~DGfk~~P 266 (358)
T COG2933 220 ACPGGWTYQLVKR---NMRVYAVDNGP-----MAQSLMDTG--QVTHLREDGFKFRP 266 (358)
T ss_pred cCCCccchhhhhc---ceEEEEeccch-----hhhhhhccc--ceeeeeccCccccc
Confidence 9999999988753 45899999654 444444444 37778889988765
No 235
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.18 E-value=33 Score=23.82 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=32.3
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|-|.-+.++++.+...+ .++.+|.++.+.+.+++. | +.++.+|+++
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~ 51 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATD 51 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTS
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchh
Confidence 45666677777776677 799999999998777643 3 4566777765
No 236
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=43.59 E-value=27 Score=27.60 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=25.6
Q ss_pred cCCc-hHHHHHHHhc-------CCCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM-------KNTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~-------~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+...+.+ +.++..++.|-++ +.+.++++.+|..
T Consensus 26 G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~---~~l~~~~~s~g~d 73 (226)
T PF06745_consen 26 GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP---EELIENMKSFGWD 73 (226)
T ss_dssp ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H---HHHHHHHHTTTS-
T ss_pred eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH---HHHHHHHHHcCCc
Confidence 6777 8998765543 3445566666655 7778888888864
No 237
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=43.51 E-value=54 Score=26.88 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=25.4
Q ss_pred cCCc-hHHHHHHHhc------CCCcEEEEEcCChHH-HHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM------KNTGVLFANDVSKER-SKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~------~~~g~v~A~D~~~~R-l~~l~~~l~r~g~~ 122 (189)
..|| |||+...+.+ +.++..++.|-...- ...+..++.++|..
T Consensus 43 G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 43 GVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 6678 9998665543 224556666743321 23466677777753
No 238
>KOG1253|consensus
Probab=43.46 E-value=19 Score=32.81 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=44.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~ 132 (189)
+|-|--+..-|..+.+=+.|+|||.++.=+..+++|.+.-++.+ |+....|+.
T Consensus 118 sAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~ 171 (525)
T KOG1253|consen 118 SATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDAN 171 (525)
T ss_pred hhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHH
Confidence 78898888888888877899999999999999999999887765 556666664
No 239
>PRK06194 hypothetical protein; Provisional
Probab=43.11 E-value=96 Score=25.04 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=41.7
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
-|-||=-.+++..+..+| .|++.|.+..+++.+.+.+...|. ++.++..|.++ ++.-+.+++.+.+++
T Consensus 13 GasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d---~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 13 GAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSD---AAQVEALADAALERF 81 (287)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCC---HHHHHHHHHHHHHHc
Confidence 344554556665554445 788999998888777776665554 47778888754 233344444444443
No 240
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.08 E-value=49 Score=26.59 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=27.6
Q ss_pred cchhh-cCCc-hHHHHHHHhc------CCCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 75 SKYWI-CAPH-RAAKLAAALM------KNTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 75 sS~l~-AAPG-gKT~~la~~~------~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
++.++ +.|| |||+...+.+ +.++..++.|-++. .+.++++.+|..
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~---~i~~~~~~~g~~ 74 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPV---QVRRNMAQFGWD 74 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHH---HHHHHHHHhCCC
Confidence 33344 6677 6998665432 23456777776654 466667788763
No 241
>PRK07454 short chain dehydrogenase; Provisional
Probab=42.92 E-value=1.1e+02 Score=23.86 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=42.1
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
|-||=...++..+-.+| .|++.+.++.+...+.+.++..+. ++.++..|.++. +.-+..++.+.+++
T Consensus 14 ~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~---~~~~~~~~~~~~~~ 81 (241)
T PRK07454 14 ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV-KAAAYSIDLSNP---EAIAPGIAELLEQF 81 (241)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC-cEEEEEccCCCH---HHHHHHHHHHHHHc
Confidence 34544555665554444 789999999888888777776553 467778887652 33344455554443
No 242
>PRK07102 short chain dehydrogenase; Provisional
Probab=42.55 E-value=95 Score=24.37 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|-||=..+++..+-.+| .|++.|.++.+.+.+.+.+...+-.++.++..|.++
T Consensus 9 as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 9 ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILD 62 (243)
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 34444445554443344 788899998888777666654444467788888754
No 243
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=42.00 E-value=1.4e+02 Score=26.15 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=25.3
Q ss_pred cCCc-hHHHHHHHhcC----CCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALMK----NTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~~----~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+.+.+++. ..+.++-++-.+ ....++.+++|+|+.
T Consensus 89 G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rlg~~ 135 (372)
T cd01121 89 GDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRLGIS 135 (372)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHcCCC
Confidence 6778 99998776652 223443333222 234567778888874
No 244
>KOG3420|consensus
Probab=41.52 E-value=41 Score=25.99 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=38.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
++-|.=+ ++..|...-.|+++|+++.-|+...+|++.+.+. +.++++|-.+
T Consensus 57 cgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdild 107 (185)
T KOG3420|consen 57 CGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILD 107 (185)
T ss_pred CchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccc
Confidence 6666544 3444555568999999999999999999998874 4666666544
No 245
>PHA03222 single-stranded binding protein UL29; Provisional
Probab=40.70 E-value=8.3 Score=32.97 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=34.6
Q ss_pred cCCchHH--HHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHh
Q psy11559 80 CAPHRAA--KLAAALMKNTGVLFANDVSKERSKAIVGNFHRL 119 (189)
Q Consensus 80 AAPGgKT--~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~ 119 (189)
.++|+|| .|.--+++.+|.|+|.+.-..|+..+...|+-+
T Consensus 256 ~~~~~k~~~~~~~Ilcg~sG~VY~~~~g~erL~riAd~L~tF 297 (337)
T PHA03222 256 EGEEGKTFFNHVKIFCGDSGAVYAALVGHDKLTKIARDLKAF 297 (337)
T ss_pred ccCCcccccCCceEEEcCCceEEEEEecCceeehHHHHHHHH
Confidence 8999999 666667788999999999999999998888754
No 246
>KOG2899|consensus
Probab=40.60 E-value=42 Score=28.05 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=34.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHh
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRL 119 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~ 119 (189)
+.-|-=|.+||...+. -.|+++||++.+++..+++++-.
T Consensus 67 CNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 67 CNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcccc
Confidence 7889999999999875 47999999999999999998754
No 247
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=40.15 E-value=78 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=38.4
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
-+|+.......||+.|...+.. ..+.+...|-++ +++.+..|..+.+++
T Consensus 31 ~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD---~~~~~~~i~~~~~~~ 79 (246)
T COG4221 31 AKVVLAARREERLEALADEIGA---GAALALALDVTD---RAAVEAAIEALPEEF 79 (246)
T ss_pred CeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCC---HHHHHHHHHHHHHhh
Confidence 3899999999999888887766 457788888776 467777888877776
No 248
>KOG1099|consensus
Probab=39.66 E-value=61 Score=26.97 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=39.9
Q ss_pred hcCCchHHHHHHHhcCC----Cc----EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 79 ICAPHRAAKLAAALMKN----TG----VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 79 ~AAPGgKT~~la~~~~~----~g----~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
.||||+=+-.++..+.. .| .|+|+|+-+- .-+..|..+..|-+.. .--|.+|+.|-.+
T Consensus 49 CAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~---stae~Ii~hfgge 114 (294)
T KOG1099|consen 49 CAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSA---STAEAIIEHFGGE 114 (294)
T ss_pred hcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCH---hHHHHHHHHhCCC
Confidence 39999998888877643 33 3999996431 1234566667776552 3445666666554
Q ss_pred C-CcEEEe
Q psy11559 151 R-DVKLVP 157 (189)
Q Consensus 151 ~-~~~l~~ 157 (189)
. |+.+.+
T Consensus 115 kAdlVvcD 122 (294)
T KOG1099|consen 115 KADLVVCD 122 (294)
T ss_pred CccEEEeC
Confidence 4 555544
No 249
>KOG0056|consensus
Probab=39.53 E-value=46 Score=30.91 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCC---CChhhccCceeeeCccchhh---------cCCchHHHHH
Q psy11559 22 TRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIG---ATPEYLGGHYILQGASKYWI---------CAPHRAAKLA 89 (189)
Q Consensus 22 ~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~G~~~vQD~sS~l~---------AAPGgKT~~l 89 (189)
++.|.+.+.|+++.- +... |.+|. +.+.. +.+. -+=+|..|+..+||.|=-.. ..-|||++.|
T Consensus 507 iDmEnmfdllkee~e-Vvd~-P~a~p-l~~~~--G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTim 581 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPE-VVDL-PGAPP-LKVTQ--GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIM 581 (790)
T ss_pred hhHHHHHHHhhcCch-hhcC-CCCCC-ccccC--CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHH
Confidence 466777777776532 2221 33332 22222 1111 12257888888888775443 5557899988
Q ss_pred HHhcC----CCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-----------CCCcHHHHHHHHh
Q psy11559 90 AALMK----NTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK-----------PEENEAVVNYALR 149 (189)
Q Consensus 90 a~~~~----~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~-----------~eENE~vV~~~L~ 149 (189)
--+.. +.|.|.--+.+ -|.-.+...-+..| ++..|..-|++ ..-||+|.+++-+
T Consensus 582 RlLfRffdv~sGsI~iDgqd-Irnvt~~SLRs~IG-----VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkA 650 (790)
T KOG0056|consen 582 RLLFRFFDVNSGSITIDGQD-IRNVTQSSLRSSIG-----VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKA 650 (790)
T ss_pred HHHHHHhhccCceEEEcCch-HHHHHHHHHHHhcC-----cccCcceeecceeeeheeecCCCCChHHHHHHHHH
Confidence 66543 56765533322 22222222222334 33444444332 5789999887654
No 250
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=39.50 E-value=20 Score=28.81 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=29.9
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHH------------hCCCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHR------------LGVINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r------------~g~~nv~~~~~Da~~~~ 135 (189)
+|-|-=...||+ +| .|+++|+|+.=++...+.-.. ....+|.+.++|.-.++
T Consensus 46 CG~g~D~~~La~----~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 46 CGKGYDMLWLAE----QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TTTSCHHHHHHH----TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCChHHHHHHHH----CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 444444445554 35 799999999887776322111 11235788899987754
No 251
>KOG3010|consensus
Probab=39.29 E-value=22 Score=29.50 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=24.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGN 115 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~ 115 (189)
||+| +|+.+++-.. -.|+|.|+|+.=|+.++..
T Consensus 42 ~G~G-qa~~~iae~~--k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 42 TGNG-QAARGIAEHY--KEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred cCCC-cchHHHHHhh--hhheeecCCHHHHHHhhcC
Confidence 7888 7776655432 2699999999888866553
No 252
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=39.06 E-value=59 Score=24.88 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=21.9
Q ss_pred HHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEE
Q psy11559 90 AALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSV 125 (189)
Q Consensus 90 a~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~ 125 (189)
...+.+.|.++..++.......+.+.+++.|+..+.
T Consensus 118 ~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 118 LAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD 153 (187)
T ss_pred HHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence 344555666666666666666666666666665443
No 253
>PRK05866 short chain dehydrogenase; Provisional
Probab=39.01 E-value=1.3e+02 Score=24.74 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=41.1
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
.|-||=-.+++..+..+| .|++.+.+..+++.+.+.+...|. .+.++..|.++ ++.-+.+++.+.++
T Consensus 47 GasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d---~~~v~~~~~~~~~~ 114 (293)
T PRK05866 47 GASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSD---LDAVDALVADVEKR 114 (293)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCC---HHHHHHHHHHHHHH
Confidence 344444455554443334 799999999999888888876664 36677788654 23333444444444
No 254
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=39.00 E-value=74 Score=20.78 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEc
Q psy11559 85 AAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTC 128 (189)
Q Consensus 85 KT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~ 128 (189)
++..+++.+...|.-+-.|....++..--..+++.|++.+.++.
T Consensus 16 ~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig 59 (91)
T cd00860 16 YAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVG 59 (91)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 34556666767787777888888888888888899988655554
No 255
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=38.65 E-value=1.1e+02 Score=23.98 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.5
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
.|++.|.+..++..+.+.++..+...+.+...|...
T Consensus 38 ~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~ 73 (247)
T PRK08945 38 TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLT 73 (247)
T ss_pred cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccC
Confidence 899999999988888888888776666676677653
No 256
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=38.58 E-value=47 Score=22.95 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=25.4
Q ss_pred EEEEEcCChH----HHHHHHHHHHHhCCCe--EEEEcCCC
Q psy11559 98 VLFANDVSKE----RSKAIVGNFHRLGVIN--SVVTCLDG 131 (189)
Q Consensus 98 ~v~A~D~~~~----Rl~~l~~~l~r~g~~n--v~~~~~Da 131 (189)
.+++.|++.. |...+.+.|+.+|+.. -.++..+.
T Consensus 3 ~lV~YDI~~~~~~k~r~kv~k~L~~~G~~rvQ~SVf~~~~ 42 (95)
T TIGR01573 3 VLVVYDIPTDGERKRRRKLRKLLEKYGLQRVQYSVFEGIL 42 (95)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHcchhheeccEEEEEc
Confidence 5889999977 8889999999999653 23444443
No 257
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=38.43 E-value=1.1e+02 Score=24.29 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=33.2
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
..|+..+.++.+++.+.+.++..+ ++..+..|.++ ++.-++.++.+.+++
T Consensus 25 ~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d---~~~~~~~~~~~~~~~ 74 (259)
T PRK08340 25 ARVVISSRNEENLEKALKELKEYG--EVYAVKADLSD---KDDLKNLVKEAWELL 74 (259)
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCC---HHHHHHHHHHHHHhc
Confidence 478889999998888877776654 46677778654 233444555555444
No 258
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=38.32 E-value=1e+02 Score=27.70 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=26.4
Q ss_pred cCCc-hHHHHHHHhcC----CCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALMK----NTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~~----~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+.+.+.+. +.+.++-++..+ ....++.+++|+|+.
T Consensus 101 G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rlg~~ 147 (454)
T TIGR00416 101 GDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRLGLP 147 (454)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHcCCC
Confidence 7789 99998776642 223443333322 345677788898864
No 259
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=37.93 E-value=41 Score=26.72 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=20.1
Q ss_pred cCCc-hHHHHHHHhc-------CCCcEEEEEcCChHHH
Q psy11559 80 CAPH-RAAKLAAALM-------KNTGVLFANDVSKERS 109 (189)
Q Consensus 80 AAPG-gKT~~la~~~-------~~~g~v~A~D~~~~Rl 109 (189)
+.|| |||+.+.+++ +.....++.|.++.++
T Consensus 20 G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~ 57 (242)
T cd00984 20 ARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHH
Confidence 8889 9999766553 2234567777776654
No 260
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=37.83 E-value=83 Score=24.57 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=23.1
Q ss_pred EcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCCCC
Q psy11559 102 NDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQYG 135 (189)
Q Consensus 102 ~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~~~ 135 (189)
-|+++.+++.+.+.+.+.... ...+....+..|+
T Consensus 46 Gev~e~~~~~l~~~l~~i~~~~~f~i~l~g~g~F~ 80 (180)
T COG1514 46 GEVDEDKADELIEALARIAAPEPFPITLDGAGSFP 80 (180)
T ss_pred CCcCchHHHHHHHHHHHhhcCCceEEEEeeEcccC
Confidence 488888888888888887654 4444444445565
No 261
>PRK07478 short chain dehydrogenase; Provisional
Probab=37.72 E-value=1.3e+02 Score=23.74 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=36.2
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
..|+..+.++.+++.+.+.++..|. ++..+..|.+. +++-+..++.+.+++
T Consensus 31 ~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~---~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 31 AKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRD---EAYAKALVALAVERF 81 (254)
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC---HHHHHHHHHHHHHhc
Confidence 3788899999999888888877764 46677778654 345555666666654
No 262
>PRK15124 2'-5' RNA ligase; Provisional
Probab=37.66 E-value=1.1e+02 Score=23.41 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=22.2
Q ss_pred EcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 102 ~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
-|+++.++..+.+.+++.......+.......|+
T Consensus 50 G~v~~~~~~~l~~~l~~~~~~pF~l~l~~~g~Fp 83 (176)
T PRK15124 50 GEVSAEKQQALSQLAGRIRQPGFTLTLDDAGQWP 83 (176)
T ss_pred CCCCHHHHHHHHHHHHhcccCCeEEEECcccCcC
Confidence 3788888888888888765554444444444454
No 263
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=37.37 E-value=1.2e+02 Score=25.71 Aligned_cols=54 Identities=13% Similarity=-0.057 Sum_probs=35.5
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~~ 135 (189)
++.|.-+..|+.. + .+.|+++|.|+.-+...+...+..+. .++.+...|...++
T Consensus 131 CG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 131 CGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred cCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 8999888888875 2 34799999998655433333333332 36777777766654
No 264
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=36.86 E-value=39 Score=32.12 Aligned_cols=40 Identities=5% Similarity=0.120 Sum_probs=30.2
Q ss_pred cCCc-hHHHHHHHhc----C----CCcEEEEEcCChHHHHHHHHHHHHh
Q psy11559 80 CAPH-RAAKLAAALM----K----NTGVLFANDVSKERSKAIVGNFHRL 119 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~----~~g~v~A~D~~~~Rl~~l~~~l~r~ 119 (189)
|+|| |||+-|...+ . +...|.|+=.+.+-...|++++.++
T Consensus 29 AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 29 AGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 9999 9998765443 2 2246888888888888899998875
No 265
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=36.54 E-value=85 Score=25.08 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=44.9
Q ss_pred hHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEE---cCCCCC-CCCCCCcHHHHHHHHhhC
Q psy11559 84 RAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVT---CLDGRQ-YGKPEENEAVVNYALRKR 151 (189)
Q Consensus 84 gKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~---~~Da~~-~~~~eENE~vV~~~L~~~ 151 (189)
||++ |-.++...+.+-.++++..-++.+...++++|+.=...- ..|+.. +--+.++.++|..+++++
T Consensus 20 Gk~s-lk~L~k~g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~ 90 (204)
T PF12687_consen 20 GKQS-LKKLLKQGKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEF 90 (204)
T ss_pred Ccee-HHHHHhcCCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHH
Confidence 5544 234444334589999999999999999999999743333 223211 111678888888888775
No 266
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=36.27 E-value=58 Score=28.24 Aligned_cols=43 Identities=23% Similarity=0.195 Sum_probs=26.4
Q ss_pred cCCc-hHHHHHHHhc---------C-CCcEEEEEcCChH-HHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM---------K-NTGVLFANDVSKE-RSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~---------~-~~g~v~A~D~~~~-Rl~~l~~~l~r~g~~ 122 (189)
..|| |||....++. + ..|.++=+|-... +-+++.+.++++|++
T Consensus 133 G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d 187 (344)
T PLN03187 133 GEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (344)
T ss_pred cCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 5566 8998765553 1 1356666776432 556666677777764
No 267
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=36.16 E-value=46 Score=26.68 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=9.7
Q ss_pred hcCCc-hHHHHHHHhc
Q psy11559 79 ICAPH-RAAKLAAALM 93 (189)
Q Consensus 79 ~AAPG-gKT~~la~~~ 93 (189)
++.|| |||+.+.+++
T Consensus 7 ~g~~G~GKS~lal~la 22 (239)
T cd01125 7 VAPGGTGKSSLLLVLA 22 (239)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 34455 8998776553
No 268
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=36.06 E-value=1.2e+02 Score=22.77 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=21.5
Q ss_pred CCc-hHHHHHHHhc---CCCc-EEEEEcCChHHHH---HHHHHHHHhCCC
Q psy11559 81 APH-RAAKLAAALM---KNTG-VLFANDVSKERSK---AIVGNFHRLGVI 122 (189)
Q Consensus 81 APG-gKT~~la~~~---~~~g-~v~A~D~~~~Rl~---~l~~~l~r~g~~ 122 (189)
-|| |||+.++.+. ...| ++..+|.+..|.. .+...+++.|+.
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~ 57 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVP 57 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeE
Confidence 355 8998755443 2233 4555555554433 344444555543
No 269
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=35.65 E-value=45 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.3
Q ss_pred EEEEEcCChHH-HHHHHHHHHHhCCCe
Q psy11559 98 VLFANDVSKER-SKAIVGNFHRLGVIN 123 (189)
Q Consensus 98 ~v~A~D~~~~R-l~~l~~~l~r~g~~n 123 (189)
.+++.|++..| ...+.+.|+++| ..
T Consensus 4 ~lv~YDi~~~k~~~kv~k~L~~~g-~~ 29 (78)
T PF09827_consen 4 YLVAYDISDNKRRNKVRKILKSYG-TR 29 (78)
T ss_dssp EEEEEEEHSHHHHHHHHHHHHHTT-EE
T ss_pred EEEEEECCCcHHHHHHHHHHHHhC-cc
Confidence 58899998776 799999999999 54
No 270
>PRK07109 short chain dehydrogenase; Provisional
Probab=35.38 E-value=1.5e+02 Score=25.03 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=34.8
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
..|+..+.++.+++.+.+.++..|. ++..+..|.++ ++.-+..++.+.+++
T Consensus 33 ~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d---~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 33 AKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVAD---AEAVQAAADRAEEEL 83 (334)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCC---HHHHHHHHHHHHHHC
Confidence 4789999999999999888888775 46777788654 223334444444443
No 271
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=35.28 E-value=50 Score=30.89 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=45.0
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC------------------CCCc
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK------------------PEEN 140 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~------------------~eEN 140 (189)
++=|-=...+++.+..+| .+++.|.|+.|++.+++ .| ..++.+|+++..- ++.|
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG---MKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC---CeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 555544445666665555 69999999999998865 35 3577888877421 5666
Q ss_pred HHHHHHHHhhC-CcEE
Q psy11559 141 EAVVNYALRKR-DVKL 155 (189)
Q Consensus 141 E~vV~~~L~~~-~~~l 155 (189)
..++..+-+.+ +..+
T Consensus 479 ~~i~~~ar~~~p~~~i 494 (621)
T PRK03562 479 LQLVELVKEHFPHLQI 494 (621)
T ss_pred HHHHHHHHHhCCCCeE
Confidence 66666555444 5444
No 272
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.03 E-value=1.5e+02 Score=24.06 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=33.7
Q ss_pred CchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 82 PHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 82 PGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
-||=-.++|..+..+| .|+..|.+..+++.+.+.++..|. ++..+..|.++
T Consensus 15 s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d 66 (275)
T PRK05876 15 ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRH 66 (275)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCC
Confidence 3444445555543344 688899999888887777776664 36667778654
No 273
>PRK08643 acetoin reductase; Validated
Probab=34.85 E-value=1.7e+02 Score=23.06 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=34.1
Q ss_pred CchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 82 PHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 82 PGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
-||=-.+++..+-..| .|+..|.+..++..+...+...+. ++..+..|.++
T Consensus 11 s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 62 (256)
T PRK08643 11 GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSD 62 (256)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 3443445555443344 788899999888888888877663 46677778643
No 274
>KOG0024|consensus
Probab=34.81 E-value=1.1e+02 Score=26.73 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=31.3
Q ss_pred cCCchHHHHH-HHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEE
Q psy11559 80 CAPHRAAKLA-AALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVV 126 (189)
Q Consensus 80 AAPGgKT~~l-a~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~ 126 (189)
|+|=|=-+.+ |..|+ -.+|+..|+++.|++..++ +|++.+..
T Consensus 178 AGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~ 220 (354)
T KOG0024|consen 178 AGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATVTDP 220 (354)
T ss_pred CcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeEEee
Confidence 8887765554 55554 5699999999999987665 89875443
No 275
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.63 E-value=1.1e+02 Score=27.53 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=30.8
Q ss_pred cCCc-hHHHHHHHhcCCC-cEEEEEcCChHHHHHHHHHHH----HhCCCeEEEEcCC
Q psy11559 80 CAPH-RAAKLAAALMKNT-GVLFANDVSKERSKAIVGNFH----RLGVINSVVTCLD 130 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~~-g~v~A~D~~~~Rl~~l~~~l~----r~g~~nv~~~~~D 130 (189)
|++| |||+.|..+..+. ..|+.+=+--.|=+.+++-++ .-|++...++.+-
T Consensus 170 AgsGVGKStLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvAT 226 (441)
T COG1157 170 AGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVAT 226 (441)
T ss_pred ecCCCcHHHHHHHHhccccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEEC
Confidence 8887 9999999887653 344444445555555555555 4456554444433
No 276
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=34.40 E-value=56 Score=27.59 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=32.2
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
.+.|.|.+...++..-..+..+|++||-++.+|...
T Consensus 88 Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~ 123 (296)
T PRK09432 88 HLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPP 123 (296)
T ss_pred ecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 688999999999988889999999999999999543
No 277
>PRK06749 replicative DNA helicase; Provisional
Probab=34.15 E-value=52 Score=29.31 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=25.6
Q ss_pred hhccCceeeeCccchhhcCCc-hHHHHHHHhcC-----C-CcEEEEEcCChHHH
Q psy11559 63 EYLGGHYILQGASKYWICAPH-RAAKLAAALMK-----N-TGVLFANDVSKERS 109 (189)
Q Consensus 63 ~~~~G~~~vQD~sS~l~AAPG-gKT~~la~~~~-----~-~g~v~A~D~~~~Rl 109 (189)
+|..|.++| +.|.|| |||+.+..++. + .-.+++.|.+...+
T Consensus 182 Gl~~G~Lii------IaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql 229 (428)
T PRK06749 182 GLQEGDFVV------LGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQL 229 (428)
T ss_pred CCCCCcEEE------EEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHH
Confidence 455555443 238899 99997665432 1 22377888887664
No 278
>PRK07814 short chain dehydrogenase; Provisional
Probab=34.07 E-value=1.6e+02 Score=23.45 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=40.7
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
.|-||=-.++++.+..+| .|+..+.++.+++.+.+.++..|. .+.+...|.+. ++.-+.+++.+.+.
T Consensus 17 GasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~---~~~~~~~~~~~~~~ 84 (263)
T PRK07814 17 GAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAH---PEATAGLAGQAVEA 84 (263)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC---HHHHHHHHHHHHHH
Confidence 344444455555443334 788999999888888887776653 46777778643 22333344444443
No 279
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=33.69 E-value=60 Score=28.10 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=27.0
Q ss_pred cCCc-hHHHHHHHhc----------CCCcEEEEEcCChH-HHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM----------KNTGVLFANDVSKE-RSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~----------~~~g~v~A~D~~~~-Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+...++. +..|.++=+|-... +.+++.+.++++|+.
T Consensus 130 G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~ 184 (342)
T PLN03186 130 GEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLN 184 (342)
T ss_pred CCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCC
Confidence 5566 8998765432 12356666776553 666677778888763
No 280
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=33.33 E-value=1.4e+02 Score=23.77 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhC---------------CCeEEEEcCCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLG---------------VINSVVTCLDGRQYG 135 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g---------------~~nv~~~~~Da~~~~ 135 (189)
+|-|-=+..||+ +| .|+|+|+++.=++.+.+ +.| ..+|.+.++|...+.
T Consensus 46 CG~G~da~~LA~----~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 46 CGKSLDMLWLAE----QGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCChHhHHHHHh----CCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 788877788886 34 79999999987776432 222 235778888887663
No 281
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=33.31 E-value=66 Score=28.54 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=33.5
Q ss_pred hhhcCCc-hHHHHH--HHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEE
Q psy11559 77 YWICAPH-RAAKLA--AALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVT 127 (189)
Q Consensus 77 ~l~AAPG-gKT~~l--a~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~ 127 (189)
.++|+|| |||..+ -.++...|.++++|.-..=.+.....+++.|- .|.++
T Consensus 48 lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~-~V~vl 100 (469)
T PF02534_consen 48 LVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGY-KVYVL 100 (469)
T ss_pred EEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCC-EEEEe
Confidence 3336666 899743 33444567999999998766777777777775 34443
No 282
>PRK08506 replicative DNA helicase; Provisional
Probab=32.86 E-value=55 Score=29.52 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=20.2
Q ss_pred cCCc-hHHHHHHHhcC------CCcEEEEEcCChHHH
Q psy11559 80 CAPH-RAAKLAAALMK------NTGVLFANDVSKERS 109 (189)
Q Consensus 80 AAPG-gKT~~la~~~~------~~g~v~A~D~~~~Rl 109 (189)
|.|| |||+.+..++. ....+++.|.+...+
T Consensus 199 arpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 199 ARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 8899 99997655532 123477778877655
No 283
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=32.50 E-value=1.6e+02 Score=28.34 Aligned_cols=60 Identities=8% Similarity=-0.082 Sum_probs=34.0
Q ss_pred eCccchhh-cCCc-hHHHHHHHhc----C----CCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 72 QGASKYWI-CAPH-RAAKLAAALM----K----NTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 72 QD~sS~l~-AAPG-gKT~~la~~~----~----~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
.|.+-+++ ..+| |||+.+..++ . ..+.|+.+|...+ .+..++.+|-.-+.+.....+.+.
T Consensus 424 ~~~g~~~I~G~tGsGKS~l~~~l~~~~~~~~~~~~~~v~i~D~~~s----~~~~~~alGG~yi~i~~g~~~~~N 493 (789)
T PRK13853 424 HDVGMTAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVFFDKDRG----GELLVRATGGTYLALRRGVPSGLA 493 (789)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccccCCCCceEEEeCCCCc----HHHHHHHcCCEEEeccCCCcCCcc
Confidence 34444445 4444 8999987553 1 2579999998752 333456677554444333334444
No 284
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=32.40 E-value=67 Score=29.90 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=45.4
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC------------------CCCCc
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG------------------KPEEN 140 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~------------------~~eEN 140 (189)
++=|--..+++..+...| .+++.|.|+.|++.+++ .| ..++.+|+++.. +++.|
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG---YKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC---CeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 666655566777665444 79999999999997764 45 356777877632 15666
Q ss_pred HHHHHHHHhhC-CcEEE
Q psy11559 141 EAVVNYALRKR-DVKLV 156 (189)
Q Consensus 141 E~vV~~~L~~~-~~~l~ 156 (189)
..++..+-+.+ +..++
T Consensus 479 ~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 479 MKIVELCQQHFPHLHIL 495 (601)
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 66666655444 54443
No 285
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=32.37 E-value=1.4e+02 Score=24.23 Aligned_cols=16 Identities=19% Similarity=-0.002 Sum_probs=7.7
Q ss_pred HHHHHHHhhCCcEEEe
Q psy11559 142 AVVNYALRKRDVKLVP 157 (189)
Q Consensus 142 ~vV~~~L~~~~~~l~~ 157 (189)
+-+...+++++|+++.
T Consensus 220 ~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 220 DEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 3344444555555544
No 286
>PRK08840 replicative DNA helicase; Provisional
Probab=32.20 E-value=56 Score=29.46 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=24.9
Q ss_pred hhccCceeeeCccchhhcCCc-hHHHHHHHhcC----CCc---EEEEEcCChHHH
Q psy11559 63 EYLGGHYILQGASKYWICAPH-RAAKLAAALMK----NTG---VLFANDVSKERS 109 (189)
Q Consensus 63 ~~~~G~~~vQD~sS~l~AAPG-gKT~~la~~~~----~~g---~v~A~D~~~~Rl 109 (189)
+|+.|.++| +.|.|| |||+....++. .+| .+++.|.+...+
T Consensus 213 G~~~g~Liv------iaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 213 GLQGSDLII------VAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred CCCCCceEE------EEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 455555554 238899 99998643321 122 367888777555
No 287
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=32.18 E-value=1.2e+02 Score=21.86 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=30.9
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
.|+..+-+..|.+.+++.+.++|+.--.+-..|++..+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~~~~~~~~~Avd~~~~~ 40 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLS 40 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCeEEEeccccccCC
Confidence 57888999999999999999999875555566777654
No 288
>PLN02823 spermine synthase
Probab=31.87 E-value=71 Score=27.55 Aligned_cols=39 Identities=10% Similarity=-0.052 Sum_probs=31.2
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHhC----CCeEEEEcCCCCCC
Q psy11559 96 TGVLFANDVSKERSKAIVGNFHRLG----VINSVVTCLDGRQY 134 (189)
Q Consensus 96 ~g~v~A~D~~~~Rl~~l~~~l~r~g----~~nv~~~~~Da~~~ 134 (189)
...|+++|+++.=++..++.+...+ -.++++...||+.+
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~ 169 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE 169 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH
Confidence 3589999999999999998876432 24689999999765
No 289
>PRK05855 short chain dehydrogenase; Validated
Probab=31.73 E-value=1.8e+02 Score=26.02 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=43.6
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
-|-||=-.+++..+...| .|+..+.+..+++.+.+.++..|. ++.++..|.++ +++=+++++.+.+++
T Consensus 322 G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~---~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 322 GAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSD---ADAMEAFAEWVRAEH 390 (582)
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC---HHHHHHHHHHHHHhc
Confidence 334444445554443344 688899999999888888877775 57788888754 334445555555443
No 290
>PRK08006 replicative DNA helicase; Provisional
Probab=31.48 E-value=57 Score=29.47 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=25.1
Q ss_pred hhccCceeeeCccchhhcCCc-hHHHHHHHhc-----C-CC-cEEEEEcCChHHH
Q psy11559 63 EYLGGHYILQGASKYWICAPH-RAAKLAAALM-----K-NT-GVLFANDVSKERS 109 (189)
Q Consensus 63 ~~~~G~~~vQD~sS~l~AAPG-gKT~~la~~~-----~-~~-g~v~A~D~~~~Rl 109 (189)
+|+.|.++| +.|.|| |||+....++ . +. ..+++.|.+...+
T Consensus 220 Gl~~G~Lii------IaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 220 GLQPSDLII------VAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred CCCCCcEEE------EEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 455555543 238999 9999754432 1 12 2477888887665
No 291
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=31.46 E-value=1.3e+02 Score=24.58 Aligned_cols=91 Identities=22% Similarity=0.314 Sum_probs=54.0
Q ss_pred cCceeeeCccchhh-------cCC--chHHHHHHHh---cC-CCcE--EEEEcCChHHHHHHHHHHHHh---CCCeEEEE
Q psy11559 66 GGHYILQGASKYWI-------CAP--HRAAKLAAAL---MK-NTGV--LFANDVSKERSKAIVGNFHRL---GVINSVVT 127 (189)
Q Consensus 66 ~G~~~vQD~sS~l~-------AAP--GgKT~~la~~---~~-~~g~--v~A~D~~~~Rl~~l~~~l~r~---g~~nv~~~ 127 (189)
.+...++|.|-.++ -+| .||+|.++-. +. +.|. |-..|+..-.-+.|.+.+.=+ ..-|.+++
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 34556666666665 223 3899876533 22 3564 445566655555555544433 33457778
Q ss_pred cCCCCCCCC--------CCCcHHHHHHHHhhCCcEEEec
Q psy11559 128 CLDGRQYGK--------PEENEAVVNYALRKRDVKLVPT 158 (189)
Q Consensus 128 ~~Da~~~~~--------~eENE~vV~~~L~~~~~~l~~~ 158 (189)
..|-..|+. -+|++..|+.+++- +.|.++
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aiey--l~L~~l 128 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEY--LHLEDL 128 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHH--hcccch
Confidence 777666654 68999999998864 344444
No 292
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=31.46 E-value=1.7e+02 Score=19.79 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=25.1
Q ss_pred cCCc-hHHHHHHHhcC------CCcEEEEEcCChHHHHHHHHHHHHhC
Q psy11559 80 CAPH-RAAKLAAALMK------NTGVLFANDVSKERSKAIVGNFHRLG 120 (189)
Q Consensus 80 AAPG-gKT~~la~~~~------~~g~v~A~D~~~~Rl~~l~~~l~r~g 120 (189)
..|| |||..+...+. ..+.++-+=.+........+.+.+..
T Consensus 7 ~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~ 54 (144)
T cd00046 7 APTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELF 54 (144)
T ss_pred CCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHh
Confidence 4556 89987655432 22444444556666777777777766
No 293
>PLN02366 spermidine synthase
Probab=31.20 E-value=1.1e+02 Score=25.92 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=38.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhC--C--CeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLG--V--INSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g--~--~nv~~~~~Da~~~ 134 (189)
.|-|+-...++.. .+-..|+.+|+++.=++..++.+..++ + .+++++..||+.+
T Consensus 100 gG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~ 157 (308)
T PLN02366 100 GGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF 157 (308)
T ss_pred CCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH
Confidence 5556655555543 333589999999998888888887653 3 3699999998654
No 294
>PRK14974 cell division protein FtsY; Provisional
Probab=31.04 E-value=73 Score=27.50 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=26.1
Q ss_pred cCCc-hHHHHHHHhc---CCCc-EEEEEcCChHHH---HHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM---KNTG-VLFANDVSKERS---KAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~---~~~g-~v~A~D~~~~Rl---~~l~~~l~r~g~~ 122 (189)
.-|| ||||.++.++ ...| .|.-++.+..|. ..|+...+++|+.
T Consensus 147 G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 147 GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCc
Confidence 5556 8999765543 2333 444445554343 5677788888875
No 295
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=30.78 E-value=3.2e+02 Score=22.83 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=42.4
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
|.+|=-..+|..+-.+| .|+-+-.++.||..|.+.++.-.--.|.+...|-++ +++=+.+.+....+
T Consensus 14 ASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~---~~~~~~l~~~l~~~ 81 (265)
T COG0300 14 ASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSD---PEALERLEDELKER 81 (265)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC---hhHHHHHHHHHHhc
Confidence 33333334444443344 688899999999999999997542347888889765 33444444443333
No 296
>PRK08339 short chain dehydrogenase; Provisional
Probab=30.76 E-value=1.6e+02 Score=23.67 Aligned_cols=37 Identities=8% Similarity=-0.021 Sum_probs=25.8
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
..|+..|.+..+++.+.+.++...-.++.++..|.++
T Consensus 33 ~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 33 ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 4788888888888877777765422346777778654
No 297
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=30.66 E-value=78 Score=28.97 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=45.9
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC------------------CCCCc
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG------------------KPEEN 140 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~------------------~~eEN 140 (189)
++-|-=..++++.+..+| .++..|.++.|++.+++ .| ..++.+|+++.. +.++|
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g---~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG---IRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC---CeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHH
Confidence 666666667888776555 79999999999988864 34 456677776521 13455
Q ss_pred HHHHHHHHhhC-CcEEE
Q psy11559 141 EAVVNYALRKR-DVKLV 156 (189)
Q Consensus 141 E~vV~~~L~~~-~~~l~ 156 (189)
-.++..+.+.+ +..++
T Consensus 496 ~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 496 GEIVASAREKRPDIEII 512 (558)
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 45666666655 55554
No 298
>PRK06172 short chain dehydrogenase; Provisional
Probab=30.63 E-value=1.6e+02 Score=23.10 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=30.4
Q ss_pred CCchHHHHHHHhcCCC-cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNT-GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~-g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|.||=-..++..+... ..|++.+.+..++..+.+.++..+. ++..+..|.++
T Consensus 15 as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 67 (253)
T PRK06172 15 GAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTR 67 (253)
T ss_pred CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 3343334444333223 3688888888777777777766653 36666677643
No 299
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=30.62 E-value=1.8e+02 Score=24.83 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=39.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLD 130 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~D 130 (189)
|+-|-=...+|..-. +..|+-+|+|..=++.-++|++.-++++..+...|
T Consensus 167 CG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~ 216 (300)
T COG2813 167 CGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASN 216 (300)
T ss_pred CCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec
Confidence 666666667776643 68999999999999999999999999885444433
No 300
>PRK06181 short chain dehydrogenase; Provisional
Probab=30.38 E-value=1.7e+02 Score=23.10 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCchHHHHHHHhcC-CCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMK-NTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~-~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|.||=..+++..+. ....|++.+.+....+.+.+.++..+. ++.+...|.++
T Consensus 9 asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 61 (263)
T PRK06181 9 ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSD 61 (263)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 44554455554332 234788888887777777666666553 46666666543
No 301
>PRK03612 spermidine synthase; Provisional
Probab=30.33 E-value=72 Score=29.17 Aligned_cols=54 Identities=9% Similarity=-0.015 Sum_probs=37.9
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHH--HHHhC-----CCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGN--FHRLG-----VINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~--l~r~g-----~~nv~~~~~Da~~~ 134 (189)
++.|+-+..++.. ....+|+++|+|+.=++..+++ +..+. -.++++...|++++
T Consensus 306 ~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 306 GGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 6667655566542 2226999999999999999983 33332 24688999998764
No 302
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=30.13 E-value=2e+02 Score=24.69 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=22.3
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
.|+..|.+..|++.+.+.+ +-.++.....|..+
T Consensus 25 ~v~va~r~~~~~~~~~~~~---~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 25 EVTVADRNPEKAERLAEKL---LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEEEESSHHHHHHHHT-----TTTTEEEEE--TTT
T ss_pred cEEEEECCHHHHHHHHhhc---cccceeEEEEecCC
Confidence 7999999999998887765 33457777777643
No 303
>PRK06904 replicative DNA helicase; Validated
Probab=30.06 E-value=58 Score=29.44 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=24.4
Q ss_pred hhccCceeeeCccchhhcCCc-hHHHHHHHhcC------C-CcEEEEEcCChHHH
Q psy11559 63 EYLGGHYILQGASKYWICAPH-RAAKLAAALMK------N-TGVLFANDVSKERS 109 (189)
Q Consensus 63 ~~~~G~~~vQD~sS~l~AAPG-gKT~~la~~~~------~-~g~v~A~D~~~~Rl 109 (189)
+|..|.++| +.|.|| |||+.+..++. + ...+++.|.+...+
T Consensus 217 Gl~~G~Lii------IaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 217 GLQPSDLII------VAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred ccCCCcEEE------EEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 455555443 238899 99997643321 1 22477778777555
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=29.68 E-value=98 Score=28.38 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=26.6
Q ss_pred cCCchHH-HHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeE
Q psy11559 80 CAPHRAA-KLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINS 124 (189)
Q Consensus 80 AAPGgKT-~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv 124 (189)
|+|=|-. .+.|..++ ..|++.|+++.|++..++ +|.+.+
T Consensus 173 aG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v 212 (509)
T PRK09424 173 AGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFL 212 (509)
T ss_pred CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEE
Confidence 5555543 34555554 379999999999886554 787643
No 305
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=29.66 E-value=62 Score=30.22 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=40.8
Q ss_pred cCCchH----HHHHHHhcCCC-c-----EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRA----AKLAAALMKNT-G-----VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgK----T~~la~~~~~~-g-----~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
=.|||. |..++..+... | .+.|.|.+...++..-..+..+|++||.++.+|...
T Consensus 359 d~~~g~~r~~s~~~a~~l~~~~gi~~i~Hltc~d~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~ 422 (612)
T PRK08645 359 DNPLARVRISNIALASLIKRELGIEPLVHITCRDRNLIGLQSHLLGLHALGIRNVLAITGDPAK 422 (612)
T ss_pred CCCCcccccCHHHHHHHHHHHhCCCeeeEecCCCcCHHHHHHHHHHHHHcCCceEEEccCCCCC
Confidence 445554 56666655432 3 678889998888888888899999999999999754
No 306
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=29.54 E-value=1.2e+02 Score=24.58 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=27.5
Q ss_pred cCCc-hHHHHHHHhcC------CCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALMK------NTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~~------~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+...+.+. ..+..++.|-++ ..+.+++.++|..
T Consensus 30 G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~---~~l~~~~~~~g~d 76 (260)
T COG0467 30 GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP---EELLENARSFGWD 76 (260)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH---HHHHHHHHHcCCC
Confidence 7899 99998877652 345677777665 4556666667753
No 307
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=29.50 E-value=38 Score=27.52 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=17.8
Q ss_pred hHHH---HHHHhcCCCcEEEEEcCChH
Q psy11559 84 RAAK---LAAALMKNTGVLFANDVSKE 107 (189)
Q Consensus 84 gKT~---~la~~~~~~g~v~A~D~~~~ 107 (189)
|||| +||..+...|+|..+|.+++
T Consensus 14 GKTT~a~nLA~~La~~GrVLliD~Dpq 40 (264)
T PRK13231 14 GKSTTVSNMAAAYSNDHRVLVIGCDPK 40 (264)
T ss_pred cHHHHHHHHhcccCCCCEEEEEeEccC
Confidence 7887 55555555679999999876
No 308
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.47 E-value=1.6e+02 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=31.8
Q ss_pred CchHHHHHHHhcCCC-cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 82 PHRAAKLAAALMKNT-GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 82 PGgKT~~la~~~~~~-g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
-||=-..++..+..+ ..|+..+.++.+++.+.+.++..|.. +.++..|.+
T Consensus 16 s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~-~~~~~~Dv~ 66 (330)
T PRK06139 16 SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE-VLVVPTDVT 66 (330)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEeeCC
Confidence 343333444433223 37888888999888888888877753 556666754
No 309
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=29.40 E-value=78 Score=24.91 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=16.4
Q ss_pred cCCc-hHHHHHHHhc----C--CCcEEEEEc-CChHHHHHHH
Q psy11559 80 CAPH-RAAKLAAALM----K--NTGVLFAND-VSKERSKAIV 113 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~--~~g~v~A~D-~~~~Rl~~l~ 113 (189)
..|| |||+...+++ . .+...+..| .++.|+..+.
T Consensus 30 G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~ 71 (225)
T PRK09361 30 GPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIA 71 (225)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH
Confidence 4455 7877654443 1 222333444 4445655443
No 310
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.34 E-value=92 Score=18.82 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHCCCee
Q psy11559 12 PLTIRTNTLKTRRRDLAQALVNRGVNL 38 (189)
Q Consensus 12 p~~lRvN~~k~~~~~~~~~L~~~g~~~ 38 (189)
.+.+|+++ .+.+.+.|++.|+.+
T Consensus 42 ~v~~~ve~----~~~~~~~L~~~G~~v 64 (65)
T cd04882 42 LLIFRTED----IEKAIEVLQERGVEL 64 (65)
T ss_pred EEEEEeCC----HHHHHHHHHHCCceE
Confidence 36677765 678899999999853
No 311
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=28.90 E-value=31 Score=26.62 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=18.8
Q ss_pred cCCc-hHHHHHHHh---c---------CCCcEEEEEcCChHHHHHHHHHHHH
Q psy11559 80 CAPH-RAAKLAAAL---M---------KNTGVLFANDVSKERSKAIVGNFHR 118 (189)
Q Consensus 80 AAPG-gKT~~la~~---~---------~~~g~v~A~D~~~~Rl~~l~~~l~r 118 (189)
..|| |||+.++.+ + ...+.|..+=.+-.=+..+-+.+..
T Consensus 24 GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 24 GPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4578 999755432 2 3334444444444444444444444
No 312
>PF05729 NACHT: NACHT domain
Probab=28.75 E-value=31 Score=25.08 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=10.4
Q ss_pred cCCc-hHHHHHHHhc
Q psy11559 80 CAPH-RAAKLAAALM 93 (189)
Q Consensus 80 AAPG-gKT~~la~~~ 93 (189)
..|| |||+.+..++
T Consensus 7 G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 7 GEPGSGKSTLLRKLA 21 (166)
T ss_pred CCCCCChHHHHHHHH
Confidence 4566 9999887665
No 313
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=28.45 E-value=2.3e+02 Score=24.29 Aligned_cols=47 Identities=6% Similarity=-0.043 Sum_probs=37.0
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHh-CCC-eEEEE
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRL-GVI-NSVVT 127 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~-g~~-nv~~~ 127 (189)
+|.|+=...|+.... ...++|.|+++.=++..++|+++- ++. .|.+.
T Consensus 123 tGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~ 171 (321)
T PRK11727 123 VGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLR 171 (321)
T ss_pred CCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence 666766666766554 468999999999999999999998 776 36654
No 314
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=28.35 E-value=1.4e+02 Score=22.53 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=27.0
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCe-EEEEcCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVIN-SVVTCLDGRQ 133 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~n-v~~~~~Da~~ 133 (189)
+|+|+||-+.=++.-+++++..|+.+ |.++...-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~ 37 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN 37 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH
Confidence 58999999999999999999999864 7776554433
No 315
>PRK05785 hypothetical protein; Provisional
Probab=28.24 E-value=1.4e+02 Score=23.95 Aligned_cols=33 Identities=9% Similarity=-0.067 Sum_probs=26.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVG 114 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~ 114 (189)
+|+|-=+.+++... .+.|+++|+|+.=++..++
T Consensus 60 cGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 60 AGKGELSYHFKKVF--KYYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHh
Confidence 88887777787765 3699999999988876554
No 316
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=28.17 E-value=33 Score=26.96 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.0
Q ss_pred cCCc-hHHHHHHHhcCC
Q psy11559 80 CAPH-RAAKLAAALMKN 95 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~ 95 (189)
+.|| |||+.|..++..
T Consensus 5 G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 5 GVPGSGKSTLIKKLLKD 21 (234)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 4566 999999999875
No 317
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=28.11 E-value=2.5e+02 Score=22.17 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=35.7
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
-|-||=-.+++..+...| .|+..+.+..+++.+...++..+. ++.++..|.++
T Consensus 19 Ga~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d 72 (259)
T PRK08213 19 GGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVAD 72 (259)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCC
Confidence 344555556666554444 788889998888888877776653 46677888654
No 318
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=27.95 E-value=3.8e+02 Score=22.77 Aligned_cols=117 Identities=9% Similarity=-0.033 Sum_probs=65.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHCCCeeeecCCCCCceEEEEccCCCCCCChhh--ccCceee-eCccchhh-cCCchHHHH
Q psy11559 13 LTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY--LGGHYIL-QGASKYWI-CAPHRAAKL 88 (189)
Q Consensus 13 ~~lRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~G~~~v-QD~sS~l~-AAPGgKT~~ 88 (189)
..+-|-+.+-+..++.+.|.+.- .. .+...+......++ ...| ..-.++| .|-.||+. |+--||-.
T Consensus 183 ~~~~vttSRRTp~~~~~~L~~~~---~~----~~~~~~~~~~~~nP--y~~~La~ad~i~VT~DSvSMvsEA~~tG~pV- 252 (311)
T PF06258_consen 183 GSLLVTTSRRTPPEAEAALRELL---KD----NPGVYIWDGTGENP--YLGFLAAADAIVVTEDSVSMVSEAAATGKPV- 252 (311)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh---cC----CCceEEecCCCCCc--HHHHHHhCCEEEEcCccHHHHHHHHHcCCCE-
Confidence 56667777777777777776531 11 12222332211122 1122 2223444 78888877 44444533
Q ss_pred HHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCC--CCC---CCCCCCcHHHHHHHHhh
Q psy11559 89 AAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLD--GRQ---YGKPEENEAVVNYALRK 150 (189)
Q Consensus 89 la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~D--a~~---~~~~eENE~vV~~~L~~ 150 (189)
.|+..+--..|++++.+.|.+.|. ++.+..+ ... +.+-.|-+.|.++++++
T Consensus 253 ---------~v~~l~~~~~r~~r~~~~L~~~g~--~r~~~~~~~~~~~~~~~pl~et~r~A~~i~~r 308 (311)
T PF06258_consen 253 ---------YVLPLPGRSGRFRRFHQSLEERGA--VRPFTGWRDLEQWTPYEPLDETDRVAAEIRER 308 (311)
T ss_pred ---------EEecCCCcchHHHHHHHHHHHCCC--EEECCCcccccccccCCCccHHHHHHHHHHHH
Confidence 334444455799999999999986 3444433 222 34467888888888765
No 319
>PRK07035 short chain dehydrogenase; Provisional
Probab=27.78 E-value=2.8e+02 Score=21.70 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=40.5
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
|-||=-.+++..+...| .|+..+.+..+++.+.+.+...|. ++..+..|..+ .+.-+..++.+++..
T Consensus 16 as~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~---~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 16 ASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG-KAEALACHIGE---MEQIDALFAHIRERH 83 (252)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC---HHHHHHHHHHHHHHc
Confidence 33443344444443334 799999999988888888776663 35666777654 234445555555543
No 320
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=27.65 E-value=59 Score=26.57 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=36.7
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC----CeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGV----INSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~----~nv~~~~~Da~~~ 134 (189)
.+-||-+..+... .+-..|+++|+++.=++..++.+..... .++++...||+.+
T Consensus 85 gG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~ 142 (246)
T PF01564_consen 85 GGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF 142 (246)
T ss_dssp STTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH
T ss_pred CCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH
Confidence 4555555555432 2235899999999999998888776543 3699999998653
No 321
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.61 E-value=2.3e+02 Score=22.02 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=28.7
Q ss_pred CCchHHHHHHHhcCCC-cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNT-GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~-g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|.||=..+++..+..+ ..|++.+.+..+++.+...++..+. ++.+...|.++
T Consensus 15 ~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 67 (239)
T PRK07666 15 AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSD 67 (239)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCC
Confidence 3444444444433222 3677777777777666666655442 45666666543
No 322
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=27.37 E-value=84 Score=28.45 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC----------CCCcHHHHHH
Q psy11559 87 KLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK----------PEENEAVVNY 146 (189)
Q Consensus 87 ~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~----------~eENE~vV~~ 146 (189)
+-||+.+.+.| +|...|+.... .-+.|+++|+. .....|+..+.. ++.|.+++..
T Consensus 21 sglA~iL~~~G~~VsGSD~~~~~---~t~~L~~~G~~--i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi~~A 86 (459)
T COG0773 21 SGLAEILLNLGYKVSGSDLAESP---MTQRLEALGIE--IFIGHDAENILDADVVVVSNAIKEDNPEIVAA 86 (459)
T ss_pred HHHHHHHHhCCCceECccccccH---HHHHHHHCCCe--EeCCCCHHHcCCCceEEEecccCCCCHHHHHH
Confidence 34566666666 69999999887 77788889974 445556654433 7889888765
No 323
>PRK07832 short chain dehydrogenase; Provisional
Probab=27.28 E-value=2.3e+02 Score=22.72 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=37.5
Q ss_pred chHHHHHHHhcCCC-cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 83 HRAAKLAAALMKNT-GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 83 GgKT~~la~~~~~~-g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
||=-.+++..+... ..|+..+.+..+++.+.+.++..|...+.....|.++ +++-+++++.+.+.
T Consensus 10 ~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~ 75 (272)
T PRK07832 10 SGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISD---YDAVAAFAADIHAA 75 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC---HHHHHHHHHHHHHh
Confidence 33333444433223 4788889888888877777776665444556677543 33444445555443
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=27.24 E-value=43 Score=28.03 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=17.1
Q ss_pred cCCc-hHHHHHHHhcC---CCc---EEEEEcCChHH
Q psy11559 80 CAPH-RAAKLAAALMK---NTG---VLFANDVSKER 108 (189)
Q Consensus 80 AAPG-gKT~~la~~~~---~~g---~v~A~D~~~~R 108 (189)
-.|| |||+++-++.. .+| -|+|+|.|..+
T Consensus 36 G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~ 71 (266)
T PF03308_consen 36 GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF 71 (266)
T ss_dssp E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC
T ss_pred CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC
Confidence 4566 89988766531 233 48888888654
No 325
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=26.93 E-value=1.4e+02 Score=21.52 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=20.2
Q ss_pred hHHHHHH-HhcCCCcEEEEEcCChHHHHHHHHH
Q psy11559 84 RAAKLAA-ALMKNTGVLFANDVSKERSKAIVGN 115 (189)
Q Consensus 84 gKT~~la-~~~~~~g~v~A~D~~~~Rl~~l~~~ 115 (189)
.-+..++ ......+.|+|+|.++..++.|+.+
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 10 SSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 3444443 2455678999999999999999999
No 326
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=26.89 E-value=62 Score=29.73 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCC
Q psy11559 109 SKAIVGNFHRLGVINSVVTCLDG 131 (189)
Q Consensus 109 l~~l~~~l~r~g~~nv~~~~~Da 131 (189)
.+.+++-++.||+.+|.+...+.
T Consensus 176 ~ekI~eV~~nLgIe~vevrTE~d 198 (542)
T COG1111 176 LEKIQEVVENLGIEKVEVRTEED 198 (542)
T ss_pred HHHHHHHHHhCCcceEEEecCCC
Confidence 35566667778999988865443
No 327
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=26.85 E-value=1.3e+02 Score=23.02 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=29.6
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYG 135 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 135 (189)
-.|+..+.+..|.+.+++.++++|+.--.+-..|++..+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~~~~~e~~~Avdg~~l~ 42 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKLGINFEFFDAVDGRDLS 42 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCceEEEEeecccccc
Confidence 478889999999999999999999853333344666543
No 328
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=26.84 E-value=1.5e+02 Score=25.20 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=26.7
Q ss_pred cCCc-hHHHHHHHhcC---CCc--EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcC
Q psy11559 80 CAPH-RAAKLAAALMK---NTG--VLFANDVSKERSKAIVGNFHRLGVINSVVTCL 129 (189)
Q Consensus 80 AAPG-gKT~~la~~~~---~~g--~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~ 129 (189)
..|| |||+.|-.+++ .+. -|+-+|..... . .+++.+.|+.-+.+..+
T Consensus 111 G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~-D--a~rI~~~g~pvvqi~tG 163 (290)
T PRK10463 111 SSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVN-D--AARIRATGTPAIQVNTG 163 (290)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHH-H--HHHHHhcCCcEEEecCC
Confidence 7788 99999854432 222 34555654432 2 23466778765555443
No 329
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=26.71 E-value=40 Score=23.45 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=12.4
Q ss_pred Cc-hHHHHHHHhcCC-CcEEEEEc
Q psy11559 82 PH-RAAKLAAALMKN-TGVLFAND 103 (189)
Q Consensus 82 PG-gKT~~la~~~~~-~g~v~A~D 103 (189)
|| ||||....+... .-.++-.|
T Consensus 8 ~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 8 PGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp TTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred CCCCHHHHHHHHHHHHCCeEEEec
Confidence 44 899977666542 23444444
No 330
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=26.63 E-value=1.7e+02 Score=21.32 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=32.5
Q ss_pred cCCchHHHHHHHhcC---CCcEEEEEcCChHHHHHHHHHHHHhC
Q psy11559 80 CAPHRAAKLAAALMK---NTGVLFANDVSKERSKAIVGNFHRLG 120 (189)
Q Consensus 80 AAPGgKT~~la~~~~---~~g~v~A~D~~~~Rl~~l~~~l~r~g 120 (189)
||-|-=+..++.++. ..-.|+++|.++...+...++.++++
T Consensus 34 sG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 34 SGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 566666677777442 34589999999999999999999988
No 331
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=26.58 E-value=2.5e+02 Score=20.25 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=37.3
Q ss_pred cEEEEEcCC--hHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhh
Q psy11559 97 GVLFANDVS--KERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRK 150 (189)
Q Consensus 97 g~v~A~D~~--~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~ 150 (189)
..|+....+ ..+++.+...++..| .++.++..|.++ ++.-+..++.+.++
T Consensus 26 ~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~---~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 26 RVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSD---PESIRALIEEVIKR 77 (167)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTS---HHHHHHHHHHHHHH
T ss_pred eEEEEeeecccccccccccccccccc-cccccccccccc---cccccccccccccc
Confidence 367778888 889999999999888 678999999764 34555666666543
No 332
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=26.43 E-value=1.5e+02 Score=26.93 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=34.1
Q ss_pred cCCc-hHHHHHHHhcCCCc------------------EEEEE-cCChHHHHHHHHHHHHhC-CCeEEEEcCCCCC
Q psy11559 80 CAPH-RAAKLAAALMKNTG------------------VLFAN-DVSKERSKAIVGNFHRLG-VINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~~g------------------~v~A~-D~~~~Rl~~l~~~l~r~g-~~nv~~~~~Da~~ 133 (189)
|++| |||+.++++..+.. .|+|. --...-.+.+.+.+...| +++..++...+..
T Consensus 148 agsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~ 222 (466)
T TIGR01040 148 SAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAND 222 (466)
T ss_pred cCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCC
Confidence 7777 99999988764432 13332 222344566888888889 6666666655544
No 333
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=26.25 E-value=2e+02 Score=25.52 Aligned_cols=48 Identities=21% Similarity=0.077 Sum_probs=35.4
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhC-CCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLG-VINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g-~~nv~~~~~Da~~ 133 (189)
||.|.=|..++... +.|+++|+++.-++..++ +.+ ..++.+.+.|+..
T Consensus 46 cG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~ 94 (475)
T PLN02336 46 AGIGRFTGELAKKA---GQVIALDFIESVIKKNES---INGHYKNVKFMCADVTS 94 (475)
T ss_pred CCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccc
Confidence 88898888888752 589999999987765433 222 3578888888853
No 334
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=26.22 E-value=34 Score=31.19 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=16.2
Q ss_pred cCCc-hHHHHHHHh---cCCCcEEEEE
Q psy11559 80 CAPH-RAAKLAAAL---MKNTGVLFAN 102 (189)
Q Consensus 80 AAPG-gKT~~la~~---~~~~g~v~A~ 102 (189)
-||| ||||+.+++ ...+|+|+=.
T Consensus 270 G~PGaGKsTFaqAlAefy~~~GkiVKT 296 (604)
T COG1855 270 GAPGAGKSTFAQALAEFYASQGKIVKT 296 (604)
T ss_pred cCCCCChhHHHHHHHHHHHhcCcEEee
Confidence 6788 999976554 4567887654
No 335
>PRK12939 short chain dehydrogenase; Provisional
Probab=26.21 E-value=2.2e+02 Score=22.08 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|-||=-.+++..+..+| .|++.+.++.++..+.+.++..+. ++.++..|.++
T Consensus 15 a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 67 (250)
T PRK12939 15 AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLAD 67 (250)
T ss_pred CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 34444455555443334 677778888777777766665553 46677777653
No 336
>PRK06125 short chain dehydrogenase; Provisional
Probab=26.04 E-value=2.2e+02 Score=22.48 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=30.3
Q ss_pred CchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 82 PHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 82 PGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
-||=..+++..+...| .|++.+.++.+++.+...++...-.++.+...|.+
T Consensus 16 ~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 67 (259)
T PRK06125 16 SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLS 67 (259)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCC
Confidence 3433344444333233 78888888888887777776543334666666654
No 337
>KOG0025|consensus
Probab=26.03 E-value=2e+02 Score=24.81 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=38.0
Q ss_pred ccCceeeeCccchhhcCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEE
Q psy11559 65 LGGHYILQGASKYWICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVV 126 (189)
Q Consensus 65 ~~G~~~vQD~sS~l~AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~ 126 (189)
..|.+.||+.+-. +=|--+.|||...+-+ -+-+=.+..-++.|++.|+++|.+.|.+
T Consensus 159 ~~GD~vIQNganS---~VG~~ViQlaka~Gik--tinvVRdR~~ieel~~~Lk~lGA~~ViT 215 (354)
T KOG0025|consen 159 NKGDSVIQNGANS---GVGQAVIQLAKALGIK--TINVVRDRPNIEELKKQLKSLGATEVIT 215 (354)
T ss_pred CCCCeeeecCccc---HHHHHHHHHHHHhCcc--eEEEeecCccHHHHHHHHHHcCCceEec
Confidence 4677888886644 3344467888776532 2333345556899999999999986543
No 338
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=25.93 E-value=33 Score=24.62 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=14.5
Q ss_pred CCc-hHHHHHHHhcCCC-cEEEEEcC
Q psy11559 81 APH-RAAKLAAALMKNT-GVLFANDV 104 (189)
Q Consensus 81 APG-gKT~~la~~~~~~-g~v~A~D~ 104 (189)
.|| |||+.+.++.... ..++..|.
T Consensus 7 ~pgsGKSt~a~~l~~~~~~~~i~~D~ 32 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRLGAVVISQDE 32 (143)
T ss_dssp STTSSHHHHHHHHHHHSTEEEEEHHH
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeHHH
Confidence 355 8999988776333 34444443
No 339
>PRK06914 short chain dehydrogenase; Provisional
Probab=25.78 E-value=2.3e+02 Score=22.69 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=28.2
Q ss_pred CchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCC-eEEEEcCCCCC
Q psy11559 82 PHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVI-NSVVTCLDGRQ 133 (189)
Q Consensus 82 PGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~-nv~~~~~Da~~ 133 (189)
-||=-.+++..+-.+| .|++.+.+..+++.+.+.++..+.. ++.++..|.++
T Consensus 12 sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 12 SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 3333344443333334 5777777777776666655555442 45566666544
No 340
>PRK11823 DNA repair protein RadA; Provisional
Probab=25.72 E-value=94 Score=27.84 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=25.0
Q ss_pred cCCc-hHHHHHHHhcC----CCcEEEEEcCChHHHHHHHHHHHHhCC
Q psy11559 80 CAPH-RAAKLAAALMK----NTGVLFANDVSKERSKAIVGNFHRLGV 121 (189)
Q Consensus 80 AAPG-gKT~~la~~~~----~~g~v~A~D~~~~Rl~~l~~~l~r~g~ 121 (189)
..|| |||+.+.++.. ..+.++-++.. .....+..+++|+|+
T Consensus 87 G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~ 132 (446)
T PRK11823 87 GDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGL 132 (446)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCC
Confidence 7788 99998766642 12343333332 234566777888886
No 341
>PRK06940 short chain dehydrogenase; Provisional
Probab=25.61 E-value=2.6e+02 Score=22.58 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=30.1
Q ss_pred chHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 83 HRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 83 GgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||=-.+++..+.....|++.|.+..+++.+.+.++..|. ++.++..|.++
T Consensus 11 ~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 60 (275)
T PRK06940 11 GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSS 60 (275)
T ss_pred ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 444445555554334688888887777766666655553 35566667654
No 342
>PRK08303 short chain dehydrogenase; Provisional
Probab=25.51 E-value=2.8e+02 Score=23.01 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHhcCCC-cEEEEEcCC----------hHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhC
Q psy11559 87 KLAAALMKNT-GVLFANDVS----------KERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKR 151 (189)
Q Consensus 87 ~~la~~~~~~-g~v~A~D~~----------~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~ 151 (189)
..+|..+-.. ..|++.+.+ +.+++.+.+.++..|. .+.++..|.++ +++-+..++.+.+++
T Consensus 22 ~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~---~~~v~~~~~~~~~~~ 93 (305)
T PRK08303 22 RGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLV---PEQVRALVERIDREQ 93 (305)
T ss_pred HHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCC---HHHHHHHHHHHHHHc
Confidence 3444333223 378888876 3567777777776664 35667788764 456666666766654
No 343
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.41 E-value=1.3e+02 Score=18.65 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHCCCeee
Q psy11559 13 LTIRTNTLKTRRRDLAQALVNRGVNLD 39 (189)
Q Consensus 13 ~~lRvN~~k~~~~~~~~~L~~~g~~~~ 39 (189)
+.+|+.+ .+.+.+.+.|++.|+.+.
T Consensus 45 v~i~v~~--~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 45 LVFRVQT--MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred EEEEEec--CCHHHHHHHHHHCCCeee
Confidence 6677765 456789999999998653
No 344
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=25.39 E-value=76 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=17.8
Q ss_pred cCCc-hHHHHHHHhcCC----CcEEEEEcCChHH
Q psy11559 80 CAPH-RAAKLAAALMKN----TGVLFANDVSKER 108 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~----~g~v~A~D~~~~R 108 (189)
..|| |||+.+..+... ...++..+.+...
T Consensus 26 G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 26 GPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 4566 899876655432 3566667665543
No 345
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.06 E-value=1.4e+02 Score=23.67 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=25.1
Q ss_pred cCCc-hHHHHHHHhc----CCCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM----KNTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
+.|| |||+...+++ .+...++-++... ..+.+.++++++|+.
T Consensus 32 G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~~~~~g~~ 78 (234)
T PRK06067 32 GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQMESVKID 78 (234)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHHHHHCCCC
Confidence 6777 8987665553 2223444444433 345677778888864
No 346
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=25.05 E-value=82 Score=23.39 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCc----HHHHHHHHhhC-CcE
Q psy11559 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGKPEEN----EAVVNYALRKR-DVK 154 (189)
Q Consensus 108 Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eEN----E~vV~~~L~~~-~~~ 154 (189)
+.+.|++.++.+|+.+|++....|--+=..+++ +..|...|+++ ++.
T Consensus 20 ~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~ 71 (137)
T PF08002_consen 20 KMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKALEERFGFD 71 (137)
T ss_dssp -HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCC
Confidence 467888888888888888777666432113333 34445555544 554
No 347
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=24.95 E-value=3.2e+02 Score=21.43 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=35.4
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
-|-||=-.+++..+..+| .|+..|.+..++..+.+.++..+. .+.....|.++
T Consensus 16 Gas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 69 (254)
T PRK08085 16 GSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTH 69 (254)
T ss_pred CCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCC
Confidence 444544455555554444 788899999888888877776653 46667778654
No 348
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=24.92 E-value=81 Score=29.47 Aligned_cols=41 Identities=7% Similarity=0.194 Sum_probs=28.2
Q ss_pred cCCc-hHHHHHHHhc----C----CCcEEEEEcCChHHHHHHHHHHHH-hC
Q psy11559 80 CAPH-RAAKLAAALM----K----NTGVLFANDVSKERSKAIVGNFHR-LG 120 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~----~~g~v~A~D~~~~Rl~~l~~~l~r-~g 120 (189)
|+|| |||+-|...+ . ....|.++=...+=...|++++.+ +|
T Consensus 21 Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 21 AGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred ecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 8999 9998776543 1 124677776666767778888765 44
No 349
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=24.89 E-value=40 Score=27.59 Aligned_cols=14 Identities=7% Similarity=-0.137 Sum_probs=10.6
Q ss_pred cCCchHHHHHHHhc
Q psy11559 80 CAPHRAAKLAAALM 93 (189)
Q Consensus 80 AAPGgKT~~la~~~ 93 (189)
.|.||||+.|..+.
T Consensus 5 vG~gGKTtl~~~l~ 18 (232)
T TIGR03172 5 VGAGGKTSTMFWLA 18 (232)
T ss_pred EcCCcHHHHHHHHH
Confidence 45699999886664
No 350
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=24.73 E-value=2.1e+02 Score=22.50 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|-||=-.+++..+..+| .|+..+.++.++..+...+ +. ++..+..|.++
T Consensus 8 asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dl~~ 57 (248)
T PRK10538 8 ATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---GD-NLYIAQLDVRN 57 (248)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cc-ceEEEEecCCC
Confidence 45555566666654445 7889999988877665543 32 46677778654
No 351
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=24.52 E-value=1.5e+02 Score=19.85 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=23.9
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCL 129 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~ 129 (189)
.|+..+-+..|.......|+++|.++|.++.+
T Consensus 67 ~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~G 98 (105)
T cd01525 67 IIVIVSHSHKHAALFAAFLVKCGVPRVCILDG 98 (105)
T ss_pred eEEEEeCCCccHHHHHHHHHHcCCCCEEEEeC
Confidence 56666666678878888999999998875543
No 352
>PRK07062 short chain dehydrogenase; Provisional
Probab=24.39 E-value=3.2e+02 Score=21.63 Aligned_cols=52 Identities=8% Similarity=-0.055 Sum_probs=32.8
Q ss_pred CchHHHHHHHhcC-CCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCC
Q psy11559 82 PHRAAKLAAALMK-NTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQ 133 (189)
Q Consensus 82 PGgKT~~la~~~~-~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~ 133 (189)
.||=-.+++..+. ....|++.+.++.+++.+.+.+....- .++..+..|.++
T Consensus 17 s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 17 SSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 3333344444443 234799999999998887777765422 357777788654
No 353
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=24.32 E-value=2.7e+02 Score=22.04 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=35.9
Q ss_pred HHhcCCCcEEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCCCC
Q psy11559 90 AALMKNTGVLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQYG 135 (189)
Q Consensus 90 a~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~~~ 135 (189)
.+.+...|+|++|=+...=+..+-+.++++|. +.+.+....+..+.
T Consensus 122 ~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg 168 (187)
T COG2242 122 WERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKPLG 168 (187)
T ss_pred HHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeecceecc
Confidence 34456779999999999999999999999998 55666666665543
No 354
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.25 E-value=2.7e+02 Score=21.72 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
|-|+=-.+++..+..+| .|++.+.++.++..+...++..+. ++.++..|.+
T Consensus 12 ~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~ 63 (258)
T PRK12429 12 AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVT 63 (258)
T ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCC
Confidence 44554556666554444 688888888888777777766553 4666667754
No 355
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.22 E-value=1e+02 Score=20.30 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEc
Q psy11559 86 AKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTC 128 (189)
Q Consensus 86 T~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~ 128 (189)
+..++..+...|.-+-.|.....+..--+.+.+.|++.+.++.
T Consensus 20 a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG 62 (94)
T cd00861 20 AEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVG 62 (94)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEEC
Confidence 4556666666677777788777887777778888887555544
No 356
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=24.06 E-value=2.1e+02 Score=18.93 Aligned_cols=31 Identities=6% Similarity=-0.129 Sum_probs=23.5
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEc
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTC 128 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~ 128 (189)
.|+..+-+..|.......++++|.+||.++.
T Consensus 58 ~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~ 88 (96)
T cd01529 58 RYVLTCDGSLLARFAAQELLALGGKPVALLD 88 (96)
T ss_pred CEEEEeCChHHHHHHHHHHHHcCCCCEEEeC
Confidence 4555555778888888889999998876653
No 357
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.01 E-value=1.9e+02 Score=25.09 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEc
Q psy11559 86 AKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTC 128 (189)
Q Consensus 86 T~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~ 128 (189)
+.|+|..|+ ..|+|+|++++|++.. +++|.+.+....
T Consensus 182 avQ~Aka~g--a~Via~~~~~~K~e~a----~~lGAd~~i~~~ 218 (339)
T COG1064 182 AVQYAKAMG--AEVIAITRSEEKLELA----KKLGADHVINSS 218 (339)
T ss_pred HHHHHHHcC--CeEEEEeCChHHHHHH----HHhCCcEEEEcC
Confidence 456666665 6999999999998764 457887554433
No 358
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.76 E-value=51 Score=25.68 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=13.6
Q ss_pred Cc-EEEEEcCChHHHHHHH
Q psy11559 96 TG-VLFANDVSKERSKAIV 113 (189)
Q Consensus 96 ~g-~v~A~D~~~~Rl~~l~ 113 (189)
.| .|+++|+++.|++.+.
T Consensus 22 ~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 22 KGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp TTSEEEEE-S-HHHHHHHH
T ss_pred CCCEEEEEeCChHHHHHHh
Confidence 45 8999999999999865
No 359
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=23.61 E-value=1e+02 Score=24.20 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=9.1
Q ss_pred cCCc-hHHHHHHHhc
Q psy11559 80 CAPH-RAAKLAAALM 93 (189)
Q Consensus 80 AAPG-gKT~~la~~~ 93 (189)
..|| |||+.+.+++
T Consensus 26 G~~GsGKT~l~~~l~ 40 (235)
T cd01123 26 GEFGSGKTQLCHQLA 40 (235)
T ss_pred CCCCCCHHHHHHHHH
Confidence 4555 8988765553
No 360
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=23.57 E-value=1.3e+02 Score=23.46 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.4
Q ss_pred cCCc-hHHHHHHHh
Q psy11559 80 CAPH-RAAKLAAAL 92 (189)
Q Consensus 80 AAPG-gKT~~la~~ 92 (189)
..|| |||+...++
T Consensus 26 G~~GsGKT~l~~~~ 39 (218)
T cd01394 26 GPPGTGKTNIAIQL 39 (218)
T ss_pred CCCCCCHHHHHHHH
Confidence 4455 777755444
No 361
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=23.50 E-value=49 Score=22.56 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=15.7
Q ss_pred cCCc-hHHHHHHHhcC---CCc-EEEEEcCCh
Q psy11559 80 CAPH-RAAKLAAALMK---NTG-VLFANDVSK 106 (189)
Q Consensus 80 AAPG-gKT~~la~~~~---~~g-~v~A~D~~~ 106 (189)
..|| |||+.+..+.. ..+ .++.++.+.
T Consensus 9 G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 9 GPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 4567 99998765543 222 355555553
No 362
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=23.49 E-value=1e+02 Score=23.12 Aligned_cols=37 Identities=11% Similarity=-0.174 Sum_probs=27.5
Q ss_pred EEEcCChHHHHHHHHHHHHhC---CCeEEEEcCCCCCCCC
Q psy11559 100 FANDVSKERSKAIVGNFHRLG---VINSVVTCLDGRQYGK 136 (189)
Q Consensus 100 ~A~D~~~~Rl~~l~~~l~r~g---~~nv~~~~~Da~~~~~ 136 (189)
.++|+|+.=++..+++.+..+ ..+|....+|+..++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~ 40 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF 40 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC
Confidence 368999998888876665322 3478999999988753
No 363
>PRK07576 short chain dehydrogenase; Provisional
Probab=23.48 E-value=2.8e+02 Score=22.14 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=30.5
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
.|-||=..+++..+...| .|++.|.++.+++.+.+.+...+. ++.++..|.+
T Consensus 16 GasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~ 68 (264)
T PRK07576 16 GGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVR 68 (264)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCC
Confidence 344444444444433334 688888888777777666666553 3456666754
No 364
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=23.47 E-value=81 Score=29.96 Aligned_cols=44 Identities=7% Similarity=0.141 Sum_probs=28.2
Q ss_pred chhh-cCCc-hHHHHHHHhc----CCC----cEEEEEcCChHHHHHHHHHHHHh
Q psy11559 76 KYWI-CAPH-RAAKLAAALM----KNT----GVLFANDVSKERSKAIVGNFHRL 119 (189)
Q Consensus 76 S~l~-AAPG-gKT~~la~~~----~~~----g~v~A~D~~~~Rl~~l~~~l~r~ 119 (189)
.+++ |+|| |||+.|...+ ... ..|.|+=...+=...|++++.++
T Consensus 19 ~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 19 PLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 3444 8999 9998776543 222 35666666655566787877765
No 365
>PF10957 DUF2758: Protein of unknown function (DUF2758); InterPro: IPR020296 Cse60 is expressed during sporulation in Bacillus subtilis. Transcription commences around 2h after the start of sporulation and had an absolute requirement for the transcription factor sigmaE. Maximal expression of cse60 further depended on the DNA-binding protein SpoIIID. Cse60 is an acidic product of only 60 residues, whose function is not known [].
Probab=23.41 E-value=80 Score=20.25 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=17.8
Q ss_pred cHHHHHHHHhhC-CcEEEecCCC
Q psy11559 140 NEAVVNYALRKR-DVKLVPTGLD 161 (189)
Q Consensus 140 NE~vV~~~L~~~-~~~l~~~~~~ 161 (189)
=|..|+.||+++ +-+++++-..
T Consensus 15 Le~~vN~fL~~~~~~~viDIKy~ 37 (60)
T PF10957_consen 15 LEDQVNDFLAKLDDDQVIDIKYQ 37 (60)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEE
Confidence 378899999997 8899987543
No 366
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.39 E-value=1.8e+02 Score=23.08 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=17.1
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
.|+..|.+..++..+.+.+...+ ++..+..|.+
T Consensus 28 ~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~ 60 (257)
T PRK07024 28 TLGLVARRTDALQAFAARLPKAA--RVSVYAADVR 60 (257)
T ss_pred EEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCC
Confidence 56666666666555444433222 4555555554
No 367
>KOG1014|consensus
Probab=23.39 E-value=4.8e+02 Score=22.43 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=46.3
Q ss_pred cCCc-hHHH--HHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCCcHHHHHHHHhhCCcEE
Q psy11559 80 CAPH-RAAK--LAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKRDVKL 155 (189)
Q Consensus 80 AAPG-gKT~--~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~eENE~vV~~~L~~~~~~l 155 (189)
|.+| ||+- .||. +| .|+-+=.+++||..+++.+++..--.+++...|.++- .|+=+-+...|+..++.+
T Consensus 57 aTDGIGKayA~eLAk----rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~---~~~ye~i~~~l~~~~VgI 129 (312)
T KOG1014|consen 57 ATDGIGKAYARELAK----RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKG---DEVYEKLLEKLAGLDVGI 129 (312)
T ss_pred CCCcchHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCC---chhHHHHHHHhcCCceEE
Confidence 7788 8854 3443 45 6888899999999999999886544588888897653 333344444444444433
No 368
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=23.37 E-value=78 Score=25.61 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=18.9
Q ss_pred cCCc-hHHHHHHHhcCCCcEEEEEcCChHHH
Q psy11559 80 CAPH-RAAKLAAALMKNTGVLFANDVSKERS 109 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~~g~v~A~D~~~~Rl 109 (189)
..|| |||+.+..+. ++-.++..|.+..++
T Consensus 19 G~~G~GKtt~a~~~~-~~~~~~~~d~~~~~l 48 (220)
T TIGR01618 19 GKPGTGKTSTIKYLP-GKTLVLSFDMSSKVL 48 (220)
T ss_pred CCCCCCHHHHHHhcC-CCCEEEeccccchhc
Confidence 5677 8999777663 345666667665444
No 369
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.26 E-value=1.4e+02 Score=18.60 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHCCCee
Q psy11559 12 PLTIRTNTLKTRRRDLAQALVNRGVNL 38 (189)
Q Consensus 12 p~~lRvN~~k~~~~~~~~~L~~~g~~~ 38 (189)
...+|+++ .+.+.+.+.|++.|+++
T Consensus 40 ~~~~rl~~--~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 40 FGILRLIV--SDPDKAKEALKEAGFAV 64 (66)
T ss_pred CCEEEEEE--CCHHHHHHHHHHCCCEE
Confidence 36788876 45678889999999865
No 370
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=23.11 E-value=38 Score=30.39 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=29.5
Q ss_pred eeeeCccchhh--cCCc-hHHHHHHHhcC-----CCcEEEEEcCChHHHHHH
Q psy11559 69 YILQGASKYWI--CAPH-RAAKLAAALMK-----NTGVLFANDVSKERSKAI 112 (189)
Q Consensus 69 ~~vQD~sS~l~--AAPG-gKT~~la~~~~-----~~g~v~A~D~~~~Rl~~l 112 (189)
|.-|+.+..|. -+|| |||++..++|. +.+.-++.=+++.++..+
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~v~YISTRVd~d~vy~~ 55 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHGNVMYISTRVDQDTVYEM 55 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHHHhccCCeEEEEeccCHHHHHHh
Confidence 44566666555 8899 99998877774 234556666777777643
No 371
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.00 E-value=2.7e+02 Score=21.84 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
|-||=-.+++..+-..| .|++.+.++.+...+.+.++..|. ++..+..|.++
T Consensus 15 asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 67 (262)
T PRK13394 15 AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTN 67 (262)
T ss_pred CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCC
Confidence 33444445544443333 677778888777777776666553 35556666543
No 372
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=22.87 E-value=1.4e+02 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=21.4
Q ss_pred hcCCCcEEEEEcCChHHHHHHHHHHHHhCCCe
Q psy11559 92 LMKNTGVLFANDVSKERSKAIVGNFHRLGVIN 123 (189)
Q Consensus 92 ~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~n 123 (189)
.+-.-++|+|+|+++.|++.- +.+|.+.
T Consensus 206 ~~agA~~IiAvD~~~~Kl~~A----~~fGAT~ 233 (366)
T COG1062 206 KAAGAGRIIAVDINPEKLELA----KKFGATH 233 (366)
T ss_pred HHcCCceEEEEeCCHHHHHHH----HhcCCce
Confidence 344568999999999999864 4578764
No 373
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=22.84 E-value=1.6e+02 Score=23.11 Aligned_cols=39 Identities=13% Similarity=0.300 Sum_probs=21.7
Q ss_pred cCCc-hHHHHHHHhc----C--CCcEEEEEcCChHHHHHHHHHHHHhCC
Q psy11559 80 CAPH-RAAKLAAALM----K--NTGVLFANDVSKERSKAIVGNFHRLGV 121 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~--~~g~v~A~D~~~~Rl~~l~~~l~r~g~ 121 (189)
..|| |||+...+.+ . ..+..+..|-+.. .+.++++++|+
T Consensus 27 G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~---~i~~~~~~~g~ 72 (229)
T TIGR03881 27 GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRE---SIIRQAAQFGM 72 (229)
T ss_pred CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHH---HHHHHHHHhCC
Confidence 5667 7998654332 2 2234555565554 44455777775
No 374
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.79 E-value=2.9e+02 Score=21.39 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=28.9
Q ss_pred chHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 83 HRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 83 GgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
||=..+++..+..+| .|+..|.+..+++.+.+.++..|. ++.....|.+.
T Consensus 15 g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (253)
T PRK08217 15 QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTD 65 (253)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 443444544433233 677788888777776666665553 35556666543
No 375
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=22.75 E-value=1.6e+02 Score=26.67 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=26.6
Q ss_pred cCCc-hHHHHHHHhc------CCCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM------KNTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~------~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+.+.+.+ +.++..++.|-++. .+.++++++|.+
T Consensus 280 G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~---~i~~~~~~~g~~ 326 (509)
T PRK09302 280 GATGTGKTLLASKFAEAACRRGERCLLFAFEESRA---QLIRNARSWGID 326 (509)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHH---HHHHHHHHcCCC
Confidence 6677 8999776654 23456677776644 456677888864
No 376
>PRK06949 short chain dehydrogenase; Provisional
Probab=22.67 E-value=2.8e+02 Score=21.68 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=33.5
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
.|-||=-.+++..+...| .|++.+.+..+++.+...+...+. ++.++..|.+.
T Consensus 16 Gasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 69 (258)
T PRK06949 16 GASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTD 69 (258)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 445555556665554445 688888888888777777655443 35666667643
No 377
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=22.66 E-value=1.2e+02 Score=23.33 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=18.0
Q ss_pred cCCc-hHHHHHHHhc----CC--CcEEEEEc-CChHHHHHHHH
Q psy11559 80 CAPH-RAAKLAAALM----KN--TGVLFAND-VSKERSKAIVG 114 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~~--~g~v~A~D-~~~~Rl~~l~~ 114 (189)
..|| |||+...++. .+ +...+..| .++.|+..+.+
T Consensus 19 G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~ 61 (209)
T TIGR02237 19 GPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAE 61 (209)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH
Confidence 4555 7887655443 22 22334444 36666655433
No 378
>PRK08233 hypothetical protein; Provisional
Probab=22.55 E-value=77 Score=23.67 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=14.1
Q ss_pred CCc-hHHHHHHHhcC--CCcEEEEEcCC
Q psy11559 81 APH-RAAKLAAALMK--NTGVLFANDVS 105 (189)
Q Consensus 81 APG-gKT~~la~~~~--~~g~v~A~D~~ 105 (189)
.|| ||||+...+.. +...++..|..
T Consensus 11 ~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred CCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 445 89997665543 12345555543
No 379
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.47 E-value=2.8e+02 Score=21.35 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=31.0
Q ss_pred cCCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
.|.||=-.++++.+...| .|++.+.++.++..+...+...+ ++.....|.+
T Consensus 12 Ga~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~ 63 (238)
T PRK05786 12 GVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVS 63 (238)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCC
Confidence 455655566665554444 68888888887776655554333 4555666654
No 380
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=22.46 E-value=1.6e+02 Score=25.43 Aligned_cols=37 Identities=8% Similarity=-0.033 Sum_probs=25.3
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHH
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFH 117 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~ 117 (189)
+|.||-- .|+-+..+...|.|+|+++.-+..-+-.+.
T Consensus 70 igSGGcn-~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 70 IGSGGCN-MLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred ecCCcch-HHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 8889852 333344556899999999998875444333
No 381
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=22.35 E-value=3.3e+02 Score=26.25 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=28.0
Q ss_pred eCccchhh-cCCc-hHHHHHHHhcC----CCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 72 QGASKYWI-CAPH-RAAKLAAALMK----NTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 72 QD~sS~l~-AAPG-gKT~~la~~~~----~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
.|.+..++ ..+| |||+.+..++. -.+.++.+|...+ .+ ..++.+|-.
T Consensus 444 ~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~~-~~---~~~~a~gG~ 496 (800)
T PRK13898 444 RDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRG-AE---IFIRALNGV 496 (800)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCcC-HH---HHHHhcCCE
Confidence 34333333 4444 99998765553 2478999998876 22 244556643
No 382
>PF13479 AAA_24: AAA domain
Probab=22.19 E-value=78 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=17.4
Q ss_pred cCCc-hHHHHHHHhcCCCcEEEEEcCChHHH
Q psy11559 80 CAPH-RAAKLAAALMKNTGVLFANDVSKERS 109 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~~g~v~A~D~~~~Rl 109 (189)
.-|| |||+.++.+ ++-.++..|-...++
T Consensus 10 G~~G~GKTt~a~~~--~k~l~id~E~g~~~~ 38 (213)
T PF13479_consen 10 GPPGSGKTTLAASL--PKPLFIDTENGSDSL 38 (213)
T ss_pred CCCCCCHHHHHHhC--CCeEEEEeCCCccch
Confidence 4566 899988876 334555555554344
No 383
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=22.14 E-value=1e+02 Score=21.58 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 110 KAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 110 ~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
+.+.+.++++|+.|+.+...|---
T Consensus 47 ~~v~etL~~lgV~~~~v~v~DkGA 70 (92)
T TIGR01608 47 STVKETLKLLGVENAVVKVVDKGA 70 (92)
T ss_pred HHHHHHHHHcCCceEEEEEEeCCh
Confidence 568889999999999988887543
No 384
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.89 E-value=2e+02 Score=18.17 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEE
Q psy11559 86 AKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVT 127 (189)
Q Consensus 86 T~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~ 127 (189)
+..++..+...|..+-.|....++....+..++.|+..+.++
T Consensus 17 a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i 58 (91)
T cd00859 17 ALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVIL 58 (91)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEE
Confidence 344555555566655555555556666666677777654443
No 385
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.84 E-value=4e+02 Score=20.94 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=33.6
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGRQ 133 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~~ 133 (189)
|-||=-.+++..+-.+| .|+..|.++.+++.+.+.++..+. .++.++..|.++
T Consensus 15 as~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 15 AAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 33443444554443334 788999999998888887776321 247777888653
No 386
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=21.81 E-value=51 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=11.1
Q ss_pred hhcCCc-hHHHHHHHhc
Q psy11559 78 WICAPH-RAAKLAAALM 93 (189)
Q Consensus 78 l~AAPG-gKT~~la~~~ 93 (189)
+.++|| |||+.+.+++
T Consensus 37 i~g~~g~GKT~~~~~l~ 53 (193)
T PF13481_consen 37 IAGPPGSGKTTLALQLA 53 (193)
T ss_dssp EEECSTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 446666 8999876653
No 387
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=21.73 E-value=3e+02 Score=19.42 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=16.5
Q ss_pred cCCc-hHHHHHHHhcC----CCcEEEEEcCChH
Q psy11559 80 CAPH-RAAKLAAALMK----NTGVLFANDVSKE 107 (189)
Q Consensus 80 AAPG-gKT~~la~~~~----~~g~v~A~D~~~~ 107 (189)
+.|| |||+.+.+++. ..+.++-.+....
T Consensus 6 G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 6 GPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 4677 99998776643 2345544444433
No 388
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=21.72 E-value=1.2e+02 Score=25.26 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=28.4
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
.+.|.|.+...++..-..+..+|++||-++.+|....
T Consensus 76 Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~ 112 (287)
T PF02219_consen 76 HLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKG 112 (287)
T ss_dssp EEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTT
T ss_pred eecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 5788899888887777778899999999999997654
No 389
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=21.70 E-value=95 Score=26.83 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=30.4
Q ss_pred cCCc-hHHHHHH--HhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEE
Q psy11559 80 CAPH-RAAKLAA--ALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVT 127 (189)
Q Consensus 80 AAPG-gKT~~la--~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~ 127 (189)
++|| |||+.+. .++.-.|.++.+|....=.+......+++|-. |.++
T Consensus 6 g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~-V~v~ 55 (384)
T cd01126 6 APTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRK-VFVF 55 (384)
T ss_pred cCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCe-EEEE
Confidence 5666 8987543 34444688999998877666666666666643 4443
No 390
>PRK07326 short chain dehydrogenase; Provisional
Probab=21.66 E-value=2.5e+02 Score=21.66 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=15.7
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCC
Q psy11559 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDG 131 (189)
Q Consensus 98 ~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da 131 (189)
.|++.+.++.++..+.+.+... ..+.++..|.
T Consensus 32 ~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~ 63 (237)
T PRK07326 32 KVAITARDQKELEEAAAELNNK--GNVLGLAADV 63 (237)
T ss_pred EEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccC
Confidence 5666666666555554444321 2244444443
No 391
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=21.46 E-value=90 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=20.3
Q ss_pred cCCc-hHHHHHHHhcC------C-CcEEEEEcCChHHH
Q psy11559 80 CAPH-RAAKLAAALMK------N-TGVLFANDVSKERS 109 (189)
Q Consensus 80 AAPG-gKT~~la~~~~------~-~g~v~A~D~~~~Rl 109 (189)
|.|| |||+.+.+++. + ...+++.|.+...+
T Consensus 202 g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 202 ARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred eCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 8899 99997765432 1 23467778777665
No 392
>KOG0743|consensus
Probab=21.42 E-value=1.4e+02 Score=26.95 Aligned_cols=41 Identities=7% Similarity=0.094 Sum_probs=25.4
Q ss_pred cCCc-hHHHHHHHhcCCCc-EEEEEcCChHHH-HHHHHHHHHhC
Q psy11559 80 CAPH-RAAKLAAALMKNTG-VLFANDVSKERS-KAIVGNFHRLG 120 (189)
Q Consensus 80 AAPG-gKT~~la~~~~~~g-~v~A~D~~~~Rl-~~l~~~l~r~g 120 (189)
--|| |||+.||++.+-=. .|+=.+++.-+. ..|++.|-..-
T Consensus 242 GPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~ 285 (457)
T KOG0743|consen 242 GPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATP 285 (457)
T ss_pred CCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCC
Confidence 6688 99999998864212 466666655554 23555555443
No 393
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=21.35 E-value=1.3e+02 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=18.2
Q ss_pred cEEEEEcCChHHHHHHHHHHHHh
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRL 119 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~ 119 (189)
+.|+-.|+++.|++.+...++++
T Consensus 29 ~ei~L~Did~~RL~~~~~~~~~~ 51 (183)
T PF02056_consen 29 SEIVLMDIDEERLEIVERLARRM 51 (183)
T ss_dssp EEEEEE-SCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHH
Confidence 48999999999999877776665
No 394
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=21.32 E-value=1.8e+02 Score=22.74 Aligned_cols=12 Identities=0% Similarity=-0.150 Sum_probs=6.5
Q ss_pred cCCc-hHHHHHHH
Q psy11559 80 CAPH-RAAKLAAA 91 (189)
Q Consensus 80 AAPG-gKT~~la~ 91 (189)
+-|| |||+...+
T Consensus 23 G~~G~GKt~~~~~ 35 (224)
T TIGR03880 23 GEYGTGKTTFSLQ 35 (224)
T ss_pred CCCCCCHHHHHHH
Confidence 4456 67665433
No 395
>PRK07714 hypothetical protein; Provisional
Probab=21.30 E-value=1.9e+02 Score=20.07 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=23.6
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHhCCCe
Q psy11559 96 TGVLFANDVSKERSKAIVGNFHRLGVIN 123 (189)
Q Consensus 96 ~g~v~A~D~~~~Rl~~l~~~l~r~g~~n 123 (189)
.-.|+|.|.+++-.+.+...++..+++-
T Consensus 36 ~lViiA~D~s~~~~~ki~~~~~~~~vp~ 63 (100)
T PRK07714 36 KLVLLSEDASVNTTKKITDKCTYYNVPM 63 (100)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhcCCCE
Confidence 3479999999999999999888888764
No 396
>PRK07402 precorrin-6B methylase; Provisional
Probab=21.19 E-value=2.6e+02 Score=21.43 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=13.9
Q ss_pred cCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q psy11559 93 MKNTGVLFANDVSKERSKAIVGNFHRLGV 121 (189)
Q Consensus 93 ~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~ 121 (189)
+.+.|.+++...+..-+..+.+.++.++.
T Consensus 132 LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 132 LKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred cCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 34445555555554444444444544443
No 397
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=21.17 E-value=93 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=20.6
Q ss_pred CeEEEEcCCC--CCHHHHHHHHHHCCCeee
Q psy11559 12 PLTIRTNTLK--TRRRDLAQALVNRGVNLD 39 (189)
Q Consensus 12 p~~lRvN~~k--~~~~~~~~~L~~~g~~~~ 39 (189)
-+++|||.++ .+.+++.+.|++.|+...
T Consensus 187 H~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 187 HFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp EEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred eeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 3789999998 788999999999999776
No 398
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=21.07 E-value=2.1e+02 Score=26.94 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=29.5
Q ss_pred cCCc-hHHHHHHHhc----CCCcEEEEEcCChHHHHHHHHHHHHhCCC
Q psy11559 80 CAPH-RAAKLAAALM----KNTGVLFANDVSKERSKAIVGNFHRLGVI 122 (189)
Q Consensus 80 AAPG-gKT~~la~~~----~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~ 122 (189)
..|| |||+.++++. ...-.|.++=.+-.-+..|.+.+...|+.
T Consensus 180 GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~ 227 (637)
T TIGR00376 180 GPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQK 227 (637)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCc
Confidence 5788 9998776543 22225666666777778888888876654
No 399
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=21.05 E-value=2.4e+02 Score=18.01 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=26.5
Q ss_pred CcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEc
Q psy11559 96 TGVLFANDVSKERSKAIVGNFHRLGVINSVVTC 128 (189)
Q Consensus 96 ~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~ 128 (189)
...|+..+-+..|...+...++.+|.++|.++.
T Consensus 56 ~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~ 88 (100)
T smart00450 56 DKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLD 88 (100)
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHcCCCceEEec
Confidence 346777778888999999999999999876654
No 400
>PRK05875 short chain dehydrogenase; Provisional
Probab=21.04 E-value=3.1e+02 Score=21.80 Aligned_cols=52 Identities=13% Similarity=-0.019 Sum_probs=25.8
Q ss_pred CCchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCC-CeEEEEcCCCC
Q psy11559 81 APHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGV-INSVVTCLDGR 132 (189)
Q Consensus 81 APGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~-~nv~~~~~Da~ 132 (189)
|-||=..+++..+-.+| .|++.+.++.+++.+.+.+...+. .++.++..|.+
T Consensus 15 asg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~ 68 (276)
T PRK05875 15 GGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVT 68 (276)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCC
Confidence 33444455554443333 566666666666555555443321 24555555543
No 401
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.91 E-value=3.3e+02 Score=21.33 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=24.2
Q ss_pred cEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCC
Q psy11559 97 GVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGR 132 (189)
Q Consensus 97 g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~ 132 (189)
..|+..+.+...++.+.+.+++.|. ++..+..|.+
T Consensus 36 ~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~ 70 (256)
T PRK06124 36 AHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIA 70 (256)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCC
Confidence 3688888888777777777776664 3566666654
No 402
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.77 E-value=4.2e+02 Score=21.12 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred CchHHHHHHHhcCCCc-EEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q psy11559 82 PHRAAKLAAALMKNTG-VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQ 133 (189)
Q Consensus 82 PGgKT~~la~~~~~~g-~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~ 133 (189)
.||=-..++..+...| .|+..|.+..+++.+.+.++..|. ++..+..|..+
T Consensus 19 s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 70 (278)
T PRK08277 19 GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLD 70 (278)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 3433344444443334 789999998888888777776654 46777888654
No 403
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=20.70 E-value=2.3e+02 Score=18.37 Aligned_cols=44 Identities=16% Similarity=0.048 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEc
Q psy11559 85 AAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTC 128 (189)
Q Consensus 85 KT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~ 128 (189)
++..++..+...|.-+-.|.+..++..-...+++.|+.-+.++.
T Consensus 19 ~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig 62 (94)
T cd00738 19 YAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVG 62 (94)
T ss_pred HHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEEC
Confidence 44556666666677666777777888777788888886444443
No 404
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=20.52 E-value=2.1e+02 Score=23.45 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.6
Q ss_pred cCCchHHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEcCCCCCC
Q psy11559 80 CAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQY 134 (189)
Q Consensus 80 AAPGgKT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~Da~~~ 134 (189)
||-||-+.-+-+. + =-.++|+|+++.-.+..+.|.. .+...|-+++
T Consensus 8 sG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~ 53 (335)
T PF00145_consen 8 SGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANFP-------EVICGDITEI 53 (335)
T ss_dssp -TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGC
T ss_pred cCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhccc-------cccccccccc
Confidence 7888877666543 1 1269999999999999999986 4455565554
No 405
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=20.13 E-value=1.3e+02 Score=21.52 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=23.5
Q ss_pred EEEEcCChHHHHHHHHHHHHhCCCeEEEEcC
Q psy11559 99 LFANDVSKERSKAIVGNFHRLGVINSVVTCL 129 (189)
Q Consensus 99 v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~~ 129 (189)
|.|. +.++|+..+++.|...|+....+...
T Consensus 4 I~AI-IRp~kl~~v~~aL~~~G~~g~Tv~~V 33 (112)
T PRK10858 4 IDAI-IKPFKLDDVREALAEVGITGMTVTEV 33 (112)
T ss_pred EEEE-ECHHHHHHHHHHHHHCCCCeEEEEEe
Confidence 3444 68999999999999999987665443
No 406
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.12 E-value=2.4e+02 Score=19.98 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCcEEEEEcCChHHHHHHHHHHHHhCCCeEEEEc
Q psy11559 85 AAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTC 128 (189)
Q Consensus 85 KT~~la~~~~~~g~v~A~D~~~~Rl~~l~~~l~r~g~~nv~~~~ 128 (189)
++..+++.+...|.-+-.|.. .++..--+.+++.|++-+.++.
T Consensus 43 ~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG 85 (121)
T cd00858 43 IAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPFCVTVD 85 (121)
T ss_pred HHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCEEEEEC
Confidence 445677777777877778888 8888888888899988555544
Done!