RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11559
(189 letters)
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 163 bits (414), Expect = 5e-50
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
EA E P R NTLK +DL + L +G + W+K G + I +TP
Sbjct: 35 IAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTREPFSITSTP 93
Query: 63 EYLGGHYILQGASKYWIC---APHRAAK---LAAA----------LMKNTGVLFANDVSK 106
E+L G +Q AS + P +AAA LM+N GV++A DV +
Sbjct: 94 EFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE 153
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R + N RLGV+N ++ G+
Sbjct: 154 NRLRETRLNLSRLGVLNVILFHSSSLHIGE 183
Score = 51.0 bits (123), Expect = 3e-08
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
PEENE V+ +AL DV+L+P L +G N E+ + R+ P
Sbjct: 251 PEENEFVIQWALDNFDVELLP--LKYGEPALTNPF-GIELSEEI-KNARRLYP 299
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 155 bits (395), Expect = 1e-47
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 4 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPE 63
+ + ++ IR NTLK L + L N+GV L+ + + S IG+TPE
Sbjct: 2 MIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKT--FLDYAFEVKKSPFSIGSTPE 59
Query: 64 YLGGHYILQGASKYWIC---APHRAAK---LAAA----------LMKNTGVLFANDVSKE 107
YL G+Y+ Q S P + AA LMKN G + A ++SK
Sbjct: 60 YLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKT 119
Query: 108 RSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R+KA+ N +R+GV+N+++ D R+Y
Sbjct: 120 RTKALKSNINRMGVLNTIIINADMRKYKD 148
Score = 41.4 bits (98), Expect = 7e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 137 PEENEAVVNYALRKR-DVKLVPTGLD-FGTEGFVNYRQNKSYR 177
EENE V+ Y L+KR DV+L+ + F + R
Sbjct: 216 VEENEEVIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLR 258
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 156 bits (397), Expect = 4e-46
Identities = 50/155 (32%), Positives = 66/155 (42%), Gaps = 22/155 (14%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIG 59
FL A + +IR NTLK D Q G L PI W + G I +P+G
Sbjct: 29 FLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPLG 87
Query: 60 ATPEYLGGHYILQGAS--------KYWICAPHRAAKLAAA----------LMKNTGVLFA 101
+T E+L G + +Q AS AP R +AAA M N G + A
Sbjct: 88 STAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILA 147
Query: 102 NDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
N+ S R K + N R G+ N +T DGR +G
Sbjct: 148 NEFSASRVKVLHANISRCGISNVALTHFDGRVFGA 182
Score = 43.2 bits (102), Expect = 2e-05
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 137 PEENEAVVNYALRKRD--VKLVPTGLDFGTEGF 167
EENEAV + V+ +P G F
Sbjct: 251 QEENEAVCLWLKETYPDAVEFLPLGDLFPGANK 283
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 139 bits (352), Expect = 7e-41
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 32/176 (18%)
Query: 5 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKV----------------G 48
+Q P +R NTLKT D+ +G +
Sbjct: 4 PGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPE 63
Query: 49 LVIYNSTVPIGATPEYLGGHYILQGASKYW---ICAPHR--------AA---K--LAAAL 92
L+++ + + P Y GH ILQ + + P AA K AAL
Sbjct: 64 LLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAAL 123
Query: 93 MKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYAL 148
+KN G +FA D+ +R ++ R GV + D + V+Y L
Sbjct: 124 LKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179
Score = 46.9 bits (112), Expect = 8e-07
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 137 PEENEAVVNYALRKR--DVKLVPTGLDFGTEGFVNYRQNKSYR 177
EENE VV AL++ +L P + G + +
Sbjct: 239 QEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCL 281
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 141 bits (357), Expect = 2e-40
Identities = 41/151 (27%), Positives = 57/151 (37%), Gaps = 23/151 (15%)
Query: 3 FLEA-SETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
FL+A +E +R +R NTLK + L PI W + G P G
Sbjct: 21 FLKALTEGKRTYGLRVNTLKLPPEAFQRI---SPWPLRPI-PWCQEGFYYPEEARP-GPH 75
Query: 62 PEYLGGHYILQGASKYWIC---APHR--------AA---K--LAAALMKNTGVLFANDVS 105
P + G Y +Q S + P AA K AA M G+L AN+V
Sbjct: 76 PFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVD 135
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R + ++ N R G VT R +
Sbjct: 136 GKRVRGLLENVERWGA-PLAVTQAPPRALAE 165
Score = 44.6 bits (106), Expect = 5e-06
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 137 PEENEAVVNYALRKR-DVKLVPTGL-DFGTEGFVNYRQ 172
PEENE VV + L+ + +L L G + +
Sbjct: 234 PEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGE 271
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 140 bits (354), Expect = 4e-40
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 24/151 (15%)
Query: 3 FLEASETQR-PLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
F A E R N LK D+ Q + + P +S G + G +
Sbjct: 27 FFSALEQGSVKKGFRWNPLKPAGLDMVQTYHSEELQPAP---YSNEGFLG----TVNGKS 79
Query: 62 PEYLGGHYILQGASKY---WICAPHR--------AA---K--LAAALMKNTGVLFANDVS 105
+ G+ Q S A AA K AA MK G+L N++
Sbjct: 80 FLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIF 139
Query: 106 KERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
+R+K + N R GV N++VT +
Sbjct: 140 PKRAKILSENIERWGVSNAIVTNHAPAELVP 170
Score = 47.7 bits (114), Expect = 5e-07
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFG-TEGFVNYRQNKSYRPEMQ 181
PEENE ++++ + V + L + G + ++
Sbjct: 239 PEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIR 284
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 75.4 bits (186), Expect = 2e-16
Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 18/150 (12%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
F ++ ++IR NTLK ++ L GV + + L I +
Sbjct: 177 FRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVR-SERVPTILKI-KGPYNFDTSS 234
Query: 63 EYLGGHYILQGASKYWIC---APHR--------AA---K--LAAALMKNTGVLFANDVSK 106
+ G I+Q + P AA K A LMKN G ++A DV K
Sbjct: 235 AFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK 294
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGK 136
R K + R+G+ D R+ +
Sbjct: 295 MRMKRLKDFVKRMGIKIVKPLVKDARKAPE 324
Score = 29.9 bits (68), Expect = 0.49
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 137 PEENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQ 172
EENE + + L + KLVP + +
Sbjct: 394 KEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGTMR 430
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 62.2 bits (152), Expect = 5e-12
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 18/153 (11%)
Query: 4 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPE 63
+EA+ + P+ +R N R L G+ P + + + P+ A P
Sbjct: 165 VEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHA-DYPDAVRL-ETPAPVHALPG 222
Query: 64 YLGGHYILQGASKYWIC---APHRAAKL----AA--------ALMKNTGVLFANDVSKER 108
+ G +Q AS AP + AA + + A D+ ++R
Sbjct: 223 FEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQR 282
Query: 109 SKAIVGNFHRLGVINSVVTCLDGRQYGKPEENE 141
+ N RLG + + V DGR + +
Sbjct: 283 LSRVYDNLKRLG-MKATVKQGDGRYPSQWCGEQ 314
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 137 PEENEAVVNYALRKR-DVKLVPTGL-----------DFGTEGF 167
PEEN + L++ D +L TG +GF
Sbjct: 379 PEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGF 421
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 5e-04
Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 68/211 (32%)
Query: 4 LEASETQRPLTIRTNTLK-------------TRRRD-----LAQALVNRGVNLDPIGKWS 45
++A T RPLT+ +L+ ++ ++ L + + +P +
Sbjct: 1 MDAYST-RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT---T 56
Query: 46 KVGLVIYNSTVPIGATPEYLGGHYILQGASKYWICAPHRAAKLAAALMK-NTGVLFANDV 104
LV ++LG Y+ L L + L ND+
Sbjct: 57 PAELVG-----------KFLG--YVSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 105 SKERSKAIVGNFH-----RLGVINSVVTC------LDGRQYGKPEENEAVVNYALRKRDV 153
A+ L ++ + R + K + A+ A+ + +
Sbjct: 102 -----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALFR-AVGEGNA 154
Query: 154 KLVPTGLDFGTEGFVNYRQ--NKSYRPEMQE 182
+LV FG G Q Y E+++
Sbjct: 155 QLVAI---FG--G-----QGNTDDYFEELRD 175
Score = 31.2 bits (70), Expect = 0.21
Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 67/183 (36%)
Query: 16 RTNTLKTRRRDLAQALVN--------------RGVNLD------PIG------KWSKVGL 49
+TN+ + + +LVN G+NL P G +S+ L
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 50 VIYNSTVPIGATPEYLGGHYILQGASKYWICAPHRAAKLAAALMKNTGVLFANDVSKERS 109
N +P+ + P + H S + L D+ K
Sbjct: 415 KFSNRFLPVAS-P-F---H------SHL---------------LVPASDLINKDLVK--- 445
Query: 110 KAIVGNFHRLGVINSVVTCLDGR--QYGKPEENEAVVNYALRKRDV---KLVPTG----L 160
+ N + + V DG + +E +V+ +R V L
Sbjct: 446 NNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQFKATHIL 502
Query: 161 DFG 163
DFG
Sbjct: 503 DFG 505
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.058
Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 38/186 (20%)
Query: 19 TLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHYILQGA---- 74
TL +++ ++ Q V + ++ S + P T Y+ L
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 75 SKYWICAPHRAAKLAAAL-------------MKNTG--VLFANDVSKERSKAIVGNFH-- 117
+KY + KL AL + +G + A DV S +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVC--LSYKVQCKMDFK 183
Query: 118 ----RLGVINSVVTCLDGRQ--YGKPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 171
L NS T L+ Q + N+ R + +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLL-----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 172 QNKSYR 177
++K Y
Sbjct: 239 KSKPYE 244
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 29.7 bits (67), Expect = 0.41
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 79 ICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSVV 126
I + + ++S+ER + I+ N LGV + +
Sbjct: 32 IGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIA 79
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 28.7 bits (65), Expect = 1.3
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 41 IGKWSKVG-LVIYNSTVPIGATPEYL 65
I + K G +I ST+ +++
Sbjct: 115 ILPFLKKGNTIIVESTIAPKTMDDFV 140
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca
domestica} PDB: 2h5z_A* 3cb7_A
Length = 122
Score = 27.3 bits (60), Expect = 1.6
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 26 DLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA-TPEYLGGHY---ILQGASKYWICA 81
LA+ + GV + +W + + S+ P G I Q + YW C
Sbjct: 7 SLAREMYALGVPKSELPQW--TCIAEHESSYRTNVVGPTNSNGSNDYGIFQINNYYW-CQ 63
Query: 82 PHR 84
P
Sbjct: 64 PSN 66
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 27.8 bits (62), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 35 GVNLDPIGKWSKVGLVIYNSTVPIGATPEY 64
G N+ I W +I NS+VPIG P Y
Sbjct: 253 GRNIHNIRDW-----IIRNSSVPIGTVPIY 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.9
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 71 LQGASK-YWICAPHRAAKLAAALMKNT 96
LQ + K Y A A LA +K T
Sbjct: 25 LQASLKLY---ADDSAPALA---IKAT 45
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 27.6 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 41 IGKWSKVG-LVIYNSTVPIGATPE 63
+GK+ K G LV+ ST+ G T
Sbjct: 133 VGKYLKPGMLVVLESTITPGTTEG 156
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB:
1gd6_A
Length = 120
Score = 26.5 bits (58), Expect = 3.7
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 26 DLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGGHY----ILQGASKYWICA 81
L L +G + + + W V LV S + Q KYW C+
Sbjct: 7 GLVNELRKQGFDENLMRDW--VCLVENESARYTDKIANVNKNGSRDYGLFQINDKYW-CS 63
Query: 82 PHR 84
Sbjct: 64 KGS 66
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 26.8 bits (60), Expect = 4.8
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 22/74 (29%)
Query: 78 WICAPHRAAKLAAALMKNTGVLFANDVSKERSKAIVGNFHRLGVINSV-VTCLDGRQYGK 136
I A + + L KN G I + LG +V +T GK
Sbjct: 309 LIDLGIEAGTIFSYLEKN-GY-------------ITRSGAALGFPTAVRITI------GK 348
Query: 137 PEENEAVVNYALRK 150
E+N AV+ L K
Sbjct: 349 EEDNSAVIA-LLEK 361
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 26.6 bits (59), Expect = 5.5
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 51 IYNSTVPIGATPEYLGGHYILQGASKYWICAPHRAAKLAAALMK 94
I STV G + + G S + PH + AAL+
Sbjct: 253 IL-STVDSGTRRPVSDAYSFMAGTS---MATPHVSG--VAALVI 290
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 26.6 bits (59), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 60 ATPEYLGGHYILQGASKYWI 79
A P G +Y L G SK WI
Sbjct: 184 AVPSPCGKYYTLNG-SKLWI 202
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3;
activator, DNA-binding, metal-binding, nucleus; HET:
DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A*
1gat_A* 1gau_A*
Length = 63
Score = 24.6 bits (53), Expect = 7.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 9 TQRPLTIRTNTLKTRRR 25
RPLT++ ++TR R
Sbjct: 43 INRPLTMKKEGIQTRNR 59
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein,
transcription factor, zinc binding domain, complex
(transcription regulation/DNA); HET: DNA; NMR
{Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A*
6gat_A* 7gat_A*
Length = 66
Score = 24.3 bits (52), Expect = 8.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 9 TQRPLTIRTNTLKTRRRDLAQA 30
RPL+++T+ +K R R+ A +
Sbjct: 45 VVRPLSLKTDVIKKRNRNSANS 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,834,486
Number of extensions: 165165
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 35
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)