RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11559
(189 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 75.1 bits (183), Expect = 5e-17
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 3 FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 62
EA E P R NTLK +DL + L +G + W+K G + I +TP
Sbjct: 33 IAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTREPFSITSTP 91
Query: 63 EYLGGHYILQGASKYWICAPHRA----------------AKLAAALMKNTGVLFANDVSK 106
E+L G +Q AS + A LM+N GV++A DV +
Sbjct: 92 EFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE 151
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEE 139
R + N RLGV+N ++ G+
Sbjct: 152 NRLRETRLNLSRLGVLNVILFHSSSLHIGELNV 184
Score = 38.5 bits (88), Expect = 3e-04
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 137 PEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQNKSYRPEMQEKQERVSP 189
PEENE V+ +AL DV+L+P L +G N + E + R+ P
Sbjct: 249 PEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIE--LSEEIKNARRLYP 297
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 73.2 bits (178), Expect = 2e-16
Identities = 37/171 (21%), Positives = 56/171 (32%), Gaps = 32/171 (18%)
Query: 10 QRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKV----------------GLVIYN 53
Q P +R NTLKT D+ +G + L+++
Sbjct: 1 QLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFP 60
Query: 54 STVPIGATPEYLGGHYILQGASKYWI----------------CAPHRAAKLAAALMKNTG 97
+ + P Y GH ILQ + AP AAL+KN G
Sbjct: 61 AQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQG 120
Query: 98 VLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYAL 148
+FA D+ +R ++ R GV + D + V+Y L
Sbjct: 121 KIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171
Score = 36.6 bits (83), Expect = 0.001
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 137 PEENEAVVNYALRKRD--VKLVPTGLDFGTEGFVNYRQNKSYR 177
EENE VV AL++ +L P + G + +
Sbjct: 231 QEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCL 273
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 59.7 bits (143), Expect = 1e-11
Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 17/146 (11%)
Query: 2 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 61
S +EA+ + P+ +R N R L G+ P + V + P+ A
Sbjct: 19 SIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDA--VRLETPAPVHAL 76
Query: 62 PEYLGGHYILQGASKYW---------------ICAPHRAAKLAAALMKNTGVLFANDVSK 106
P + G +Q AS +CA + + A D+ +
Sbjct: 77 PGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDE 136
Query: 107 ERSKAIVGNFHRLGVINSVVTCLDGR 132
+R + N RLG+ +V
Sbjct: 137 QRLSRVYDNLKRLGMKATVKQGDGRY 162
Score = 37.4 bits (85), Expect = 5e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 137 PEENEAVVNYALRKR-DVKLVPTGLDF-----------GTEGF 167
PEEN + L++ D +L TG +GF
Sbjct: 235 PEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGF 277
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 27.1 bits (60), Expect = 0.63
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 24 RRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT-PEYLGGHY--ILQGASKYWIC 80
R L L G + + W V LV + S+ T G + Q +YW C
Sbjct: 5 RCGLVHELRKHGFEENLMRNW--VCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW-C 61
Query: 81 APHR 84
+
Sbjct: 62 SKGA 65
>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 26.3 bits (57), Expect = 2.3
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 93 MKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKRD 152
MK + + VSK + +F R G + D + + +NE + R+
Sbjct: 222 MKENPMTNRSTVSKSILDQSISSFMRKGTVG------DWKNHFTVAQNER-FDEIYRR-- 272
Query: 153 VKLVPTGLDFGTE 165
K+ T ++F E
Sbjct: 273 -KMEGTSINFSME 284
>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 25.5 bits (55), Expect = 4.9
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 93 MKNTGVLFANDVSKERSKAIVGNFHRLGVINSVVTCLDGRQYGKPEENEAVVNYALRKRD 152
MK + V +E + F R G+ D + +NE + +
Sbjct: 225 MKKNPMTNYTTVPQEFMDHSISPFMRKGMAG------DWKTTFTVAQNER-FDADYAE-- 275
Query: 153 VKLVPTGLDFGTE 165
K+ L F +E
Sbjct: 276 -KMAGCSLSFRSE 287
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 23.8 bits (51), Expect = 4.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 9 TQRPLTIRTNTLKTRRR 25
RPLT+R + ++TR R
Sbjct: 40 VNRPLTMRKDGIQTRNR 56
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 24.0 bits (52), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 83 HRAAKLAAALMKNTGVLFANDVSKER 108
+A + A MKN G F N+V K R
Sbjct: 57 LQALTVLEACMKNCGRRFHNEVGKFR 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,271
Number of extensions: 28989
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 12
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)