BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1156
(671 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+I E+GP GLGF+IVGG SP G + I++K++ G A+EDGRLK GD+I+A+NGQ
Sbjct: 28 SITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 85
Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
+TH EA+++ K K G+++L +
Sbjct: 86 LEGVTHEEAVAILKRTK-GTVTLMV 109
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG I S G++ +V + + G A ++G L+ GD+II+VNGQ L G+T +A +
Sbjct: 38 LGFSIVGGYGSPHGDLPIYVKT-VFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVA 96
Query: 462 IISSGPLNMDLLI 474
I+ + L++
Sbjct: 97 ILKRTKGTVTLMV 109
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 577 HTIVFEK-GPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
H VFE P GLGF++VG + RG +GIF++ I + A DGRLKE D+ILAING
Sbjct: 20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 636 QVC-HDLTHLEAISLFKTIKNGSISLHICR 664
Q +TH +AIS+ + K+ ++ L I R
Sbjct: 80 QALDQTITHQQAISILQKAKD-TVQLVIAR 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRL-RGLTMTQAK 460
LG + +++ + G +G FV I G +A ++G L+ D+I+++NGQ L + +T QA
Sbjct: 34 LGFSVVGLRSENRGELGIFV-QEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAI 92
Query: 461 SIISSGPLNMDLLISRTSLKK 481
SI+ + L+I+R SL +
Sbjct: 93 SILQKAKDTVQLVIARGSLPQ 113
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 586 GKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G GLGF IVGG D GI++ I +NG AA DGRL+EGD+IL++NGQ +L H
Sbjct: 16 GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 75
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
+A+ LF+ ++SL + RL+S
Sbjct: 76 QDAVDLFRN-AGYAVSLRVQHRLES 99
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 416 NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
N G V+ I G A +G L+ GD+I+SVNGQ L+ L A
Sbjct: 35 NDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 78
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 586 GKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G GLGF IVGG D GI++ I +NG AA DGRL+EGD+IL++NGQ +L H
Sbjct: 26 GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 85
Query: 644 LEAISLFKTIKNGSISLHICRRLK 667
+A+ LF+ ++SL + RL+
Sbjct: 86 QDAVDLFRN-AGYAVSLRVQHRLQ 108
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 416 NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
N G V+ I G A +G L+ GD+I+SVNGQ L+ L A
Sbjct: 45 NDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 586 GKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G GLGF IVGG D GI++ I +NG AA DGRL+EGD+IL++NGQ +L H
Sbjct: 18 GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 77
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
+A+ LF+ ++SL + R S
Sbjct: 78 QDAVDLFRN-AGYAVSLRVQHRESS 101
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 416 NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
N G V+ I G A +G L+ GD+I+SVNGQ L+ L A
Sbjct: 37 NDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 80
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKK 481
V I+ GG A K+G L++GD+I++VN L + A + + + D++ LK
Sbjct: 188 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN---TYDVVY----LKV 240
Query: 482 SNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKA 541
+ N Y S S T +S N+ S+ L ++ R+
Sbjct: 241 AKPSNAYL-SDSYAPPDITTSYSQHLDNEISHSS--------YLGTDYPTAMTPTSPRRY 291
Query: 542 IISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP 601
+ G+E+ +PR PR IV +G GLGF IVGG+D
Sbjct: 292 SPVAKDLLGEED-----------IPREPRR-------IVIHRG--STGLGFNIVGGEDGE 331
Query: 602 RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK 651
GIFI IL G A G L++GD+IL++NG + +H +A K
Sbjct: 332 ----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 377
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 60 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 115
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N ++TH A+ K + GSI L++ RR
Sbjct: 116 FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 148
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DGRL+ GD+ILA+N D
Sbjct: 162 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 219
Query: 641 LTHLEAISLFK 651
+ H +A++ K
Sbjct: 220 VMHEDAVAALK 230
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
G ++ I++GG A+ G L GD+I+SVNG LR + QA
Sbjct: 332 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 372
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
++ E G+ GLG +IVGGKD+P AI I + + G AA DGRL GD+IL +NG
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAI--VIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 639 HDLTHLEAISLFK 651
+ +H EAI+ +
Sbjct: 77 RNSSHEEAITALR 89
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG+ I K++ + V+ + G A ++G L GD+I+ VNG LR + +A +
Sbjct: 30 LGLSIVGGKDTP---LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAIT 86
Query: 462 IISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKS 498
+ P + L++ R +E+H R+++S
Sbjct: 87 ALRQTPQKVRLVVYR------------DEAHYRDEES 111
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRL 624
PR ++ + I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL
Sbjct: 7 PRGSM-EYEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRL 61
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+ D IL +N ++TH A+ K + GSI L++ RR
Sbjct: 62 RVNDSILFVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 101
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DGRL+ GD+ILA+N D
Sbjct: 115 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 172
Query: 641 LTHLEAISLFK 651
+ H +A++ K
Sbjct: 173 VMHEDAVAALK 183
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVN 447
V I+ GG A K+G L++GD+I++VN
Sbjct: 141 VTKIIEGGAAHKDGRLQIGDKILAVN 166
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
F I E+G GLGF+I GG D+P GIFI I+ G AAEDGRL+ D IL +
Sbjct: 10 FEEITLERG--NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRV 67
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
N +++H +A+ K + GSI L++ RR
Sbjct: 68 NEVDVSEVSHSKAVEALK--EAGSIVRLYVRRR 98
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 3 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N ++TH A+ K + GSI L++ RR
Sbjct: 59 FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 91
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DGRL+ GD+ILA+N D
Sbjct: 105 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 162
Query: 641 LTHLEAISLFK 651
+ H +A++ K
Sbjct: 163 VMHEDAVAALK 173
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVN 447
V I+ GG A K+G L++GD+I++VN
Sbjct: 131 VTKIIEGGAAHKDGRLQIGDKILAVN 156
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 6 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N ++TH A+ K + GSI L++ RR
Sbjct: 62 FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 94
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DGRL+ GD+ILA+N D
Sbjct: 108 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 165
Query: 641 LTHLEAISLFK 651
+ H +A++ K
Sbjct: 166 VMHEDAVAALK 176
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKK 481
V I+ GG A K+G L++GD+I++VN L + A + + + D++ + + K
Sbjct: 134 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN---TYDVVYLKVA-KP 189
Query: 482 SNAE 485
SNAE
Sbjct: 190 SNAE 193
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 3 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N ++TH A+ K + GSI L++ RR
Sbjct: 59 FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 91
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 2 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N ++TH A+ K + GSI L++ RR
Sbjct: 58 FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 90
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 2 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N ++TH A+ K + GSI L++ RR
Sbjct: 58 FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 90
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 582 EKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
E G+ GLG +IVGG D+ GAI I + + G A +DGRL GD+IL +NG
Sbjct: 9 EISKGRTGLGLSIVGGSDTLLGAI--IIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 642 THLEAISLFK 651
TH EAI++ +
Sbjct: 67 THDEAINVLR 76
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 409 IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468
I S+ +G ++ + G A K+G L GD+I+ VNG LR T +A +++ P
Sbjct: 21 IVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQ 80
Query: 469 NMDLLISR 476
+ L + R
Sbjct: 81 RVRLTLYR 88
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I+D G A +DGRL+ GD +L +N +
Sbjct: 32 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89
Query: 641 LTHLEAISLFK 651
+TH EA+++ K
Sbjct: 90 VTHEEAVAILK 100
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
V I+ GG A+K+G L++GD ++ VN L +T +A +I+ +
Sbjct: 58 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN 101
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
TI +K PGK GLG +IVG R G+F+ I+ G A DGRL +GD+IL +NG+
Sbjct: 7 TIGLQKKPGK-GLGLSIVG----KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGED 61
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICR 664
+ T EA++ G+++L + R
Sbjct: 62 VRNATQ-EAVAALLKCSLGTVTLEVGR 87
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG+ I +N + G V+ IV GG+A+ +G L GD+I+ VNG+ +R T +
Sbjct: 18 LGLSIVGKRNDT-----GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAA 72
Query: 462 IISSGPLNMDLLISRTS 478
++ + L + R S
Sbjct: 73 LLKCSLGTVTLEVGRIS 89
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 12 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDSSIFITKIITGGAAAQDGRLRVNDCIL 67
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N D+TH +A+ K + GSI L++ RR
Sbjct: 68 RVNEVDVRDVTHSKAVEALK--EAGSIVRLYVKRR 100
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
+ I E+G GLGF+I GG D+P IG IFI I+ G AA+DGRL+ D IL
Sbjct: 2 YEEITLERG--NSGLGFSIAGGTDNPH--IGDDSSIFITKIITGGAAAQDGRLRVNDCIL 57
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
+N D+TH +A+ K + GSI L++ RR
Sbjct: 58 RVNEADVRDVTHSKAVEALK--EAGSIVRLYVKRR 90
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
H I EK K GLG ++ G KD R + IF+ I G AA DGR++ GDE+L IN
Sbjct: 26 LHIIELEKD--KNGLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRMRIGDELLEINN 81
Query: 636 QVCHDLTHLEAISLFKT 652
Q+ + +H A ++ KT
Sbjct: 82 QILYGRSHQNASAIIKT 98
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG+ +A K+ S +I FVV I G A +G + +GDE++ +N Q L G + A +
Sbjct: 38 LGLSLAGNKDRSRMSI--FVVG-INPEGPAAADGRMRIGDELLEINNQILYGRSHQNASA 94
Query: 462 IISSGPLNMDLLISR 476
II + P + L+ R
Sbjct: 95 IIKTAPSKVKLVFIR 109
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
T+ E+GP GLG ++ G + GA G++I+++L AA DGRL GD IL +NG
Sbjct: 11 TVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68
Query: 638 CHDLTHLEAISLFK 651
L +L A+ L +
Sbjct: 69 LLGLGYLRAVDLIR 82
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
G + ++ G A +G L LGD I+ VNG L GL +A +I G M L++++
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSD 96
Query: 479 LKKS 482
++ +
Sbjct: 97 VETA 100
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
T+ +KGP LG +I GG SP G + IFI + G AA+ +L+ GD I+ I G
Sbjct: 25 LRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHI 662
+TH +A++L K +GSI + +
Sbjct: 84 TSTEGMTHTQAVNLLKN-ASGSIEMQV 109
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE 434
+L +EN G V + ++ + LGI IA S G++ F+ A + G+A +
Sbjct: 12 DLGTENLYFQSMGLRTVEM-KKGPTDSLGISIAGGVGSPLGDVPIFI-AMMHPTGVAAQT 69
Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSII--SSGPLNMDLL----ISRTSL 479
L +GD I+++ G G+T TQA +++ +SG + M ++ +S TS+
Sbjct: 70 QKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 586 GKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N ++TH
Sbjct: 11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH 70
Query: 644 LEAISLFKTIKN 655
EA++ K +
Sbjct: 71 EEAVTALKNTSD 82
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 36 VTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 73
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 19 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 76
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 77 VTHEEAVTALKNTSD 91
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 45 VTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 82
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DGRL+ GD+ILA+N D
Sbjct: 11 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 68
Query: 641 LTHLEAISLFK 651
+ H +A++ K
Sbjct: 69 VMHEDAVAALK 79
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVN 447
V I+ GG A K+G L++GD+I++VN
Sbjct: 37 VTKIIEGGAAHKDGRLQIGDKILAVN 62
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ SI++ G A +DG+L+ GD++LA+N +
Sbjct: 11 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEE 68
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 69 VTHEEAVTALKNTSD 83
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V IV GG A K+G L++GD++++VN L +T +A
Sbjct: 37 VTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 6 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 63
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 64 VTHEEAVTALKNTSD 78
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 32 VTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+ T+ EKG KG GF+I GG++ + +++ + ++G A +GR++ GD+I+ ING
Sbjct: 12 YFTVDMEKG--AKGFGFSIRGGREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEING 66
Query: 636 QVCHDLTHLEAISLFKT 652
+ D+TH AI L K+
Sbjct: 67 ESTRDMTHARAIELIKS 83
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
V + G A + G + +GD+II +NG+ R +T +A +I SG + LL+ R
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 11 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 68
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 69 VTHEEAVTALKNTSD 83
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 74
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 7 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 64
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 65 VTHEEAVTALKNTSD 79
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 33 VTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 70
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G +GLGF+I + G+ I++K+IL G A +DGRLK GD ++ +NG + E
Sbjct: 14 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 73
Query: 646 AISLFKTIK-NGSISLHICRR 665
+SL ++ K G++SL + R+
Sbjct: 74 VVSLLRSTKMEGTVSLLVFRQ 94
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
E LG I ++ + G V +I+ G A ++G L+ GD +I VNG L G + +
Sbjct: 16 EGLGFSITS-RDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 74
Query: 460 KSIISSGPL--NMDLLISR 476
S++ S + + LL+ R
Sbjct: 75 VSLLRSTKMEGTVSLLVFR 93
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 16 KGP--KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 73
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 74 VTHEEAVTALKNTSD 88
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 42 VTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 79
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G +GLGF+I + G+ I++K+IL G A +DGRLK GD ++ +NG + E
Sbjct: 20 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 79
Query: 646 AISLFKTIK-NGSISLHICRR 665
+SL ++ K G++SL + R+
Sbjct: 80 VVSLLRSTKMEGTVSLLVFRQ 100
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
E LG I ++ + G V +I+ G A ++G L+ GD +I VNG L G + +
Sbjct: 22 EGLGFSITS-RDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80
Query: 460 KSIISSGPL--NMDLLISR 476
S++ S + + LL+ R
Sbjct: 81 VSLLRSTKMEGTVSLLVFR 99
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
+G GFT+VGG D P + I KS++ +G AA DG+++ GD I+++N TH + +
Sbjct: 11 RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 67
Query: 648 SLFKTIKNG-SISLHICR 664
+F++I G S+ L +CR
Sbjct: 68 KIFQSIPIGASVDLELCR 85
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 408 KIKNSSEG----NIGG------FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
K++ SS G +GG + +V G A +G +E GD I+SVN + G T
Sbjct: 5 KLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA 64
Query: 458 QAKSIISSGPL--NMDLLISR 476
Q I S P+ ++DL + R
Sbjct: 65 QVVKIFQSIPIGASVDLELCR 85
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
+G GFT+VGG D P + I KS++ +G AA DG+++ GD I+++N TH + +
Sbjct: 29 RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 85
Query: 648 SLFKTIKNG-SISLHICR 664
+F++I G S+ L +CR
Sbjct: 86 KIFQSIPIGASVDLELCR 103
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 396 RDFNEELGIYI-AKIKNSSEG----NIGG------FVVAHIVSGGLAEKEGCLELGDEII 444
R+ +E G +I K++ SS G +GG + +V G A +G +E GD I+
Sbjct: 10 RNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIV 69
Query: 445 SVNGQRLRGLTMTQAKSIISSGPL--NMDLLISR 476
SVN + G T Q I S P+ ++DL + R
Sbjct: 70 SVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 103
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 11 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEE 68
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 69 VTHEEAVTALKNTSD 83
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 11 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEE 68
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 69 VTHEEAVTALKNTSD 83
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N +
Sbjct: 17 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 74
Query: 641 LTHLEAISLFKTIKN 655
+TH EA++ K +
Sbjct: 75 VTHEEAVTALKNTSD 89
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 43 VTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 80
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G +GLGF+I + G+ I++K+IL G A +DGRLK GD ++ +NG + E
Sbjct: 39 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEE 98
Query: 646 AISLFKTIK-NGSISLHICRR 665
+SL ++ K G++SL + R+
Sbjct: 99 VVSLLRSTKMEGTVSLLVFRQ 119
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP KGLGF+I GG + G I+I I++ G A +DGRL+ GD +LA+N D
Sbjct: 11 KGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQD 68
Query: 641 LTHLEAISLFKTIKN 655
+ H EA++ K +
Sbjct: 69 VRHEEAVASLKNTSD 83
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 389 TMVRVNRRDFNEELGIYIAK-IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447
T++ VN + LG IA I N + I+ GG A+K+G L++GD +++VN
Sbjct: 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
Query: 448 GQRLRGLTMTQA 459
L+ + +A
Sbjct: 63 NTNLQDVRHEEA 74
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
TF + +K G GFTI+GG D P + + KS++ +G AA+DG+++ GD I+ IN
Sbjct: 19 TFLSTTLKKS--NMGFGFTIIGG-DEPDEFLQV--KSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 635 GQVCHDLTHLEAISLFKTIKNG-SISLHICR 664
TH + + LF+++ G S++L +CR
Sbjct: 74 EVCVLGHTHADVVKLFQSVPIGQSVNLVLCR 104
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+PR PR IV +G GLGF IVGG+D GIFI IL G A G L
Sbjct: 11 IPREPRR-------IVIHRG--STGLGFNIVGGEDGE----GIFISFILAGGPADLSGEL 57
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
++GD+IL++NG + +H +A
Sbjct: 58 RKGDQILSVNGVDLRNASHEQA 79
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
G ++ I++GG A+ G L GD+I+SVNG LR + QA
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 79
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN-GQVCHDLTH 643
P GLGF++V + G + IF+K + A D RLKE D+ILAIN + +++H
Sbjct: 34 PSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH 93
Query: 644 LEAISLFKTIKNGSISLHICR 664
+AI+L + GS+ L + R
Sbjct: 94 QQAIALLQQ-TTGSLRLIVAR 113
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG ++ GG ++ GI++K+I+ G A DGR+ +GD +LA+NG TH +A+
Sbjct: 25 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 82
Query: 650 FKTIKNGSISLHI 662
+T++N +H+
Sbjct: 83 -ETLRNTGQVVHL 94
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LGI + N+S + GG V I+ G AE +G + GD +++VNG L G T QA
Sbjct: 25 LGISVTGGVNTSVRH-GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 83
Query: 462 IISSGPLNMDLLISR 476
+ + + LL+ +
Sbjct: 84 TLRNTGQVVHLLLEK 98
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG ++ GG ++ GI++K+I+ G A DGR+ +GD +LA+NG TH +A+
Sbjct: 17 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 74
Query: 650 FKTIKNGSISLHI 662
+T++N +H+
Sbjct: 75 -ETLRNTGQVVHL 86
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LGI + N+S + GG V I+ G AE +G + GD +++VNG L G T QA
Sbjct: 17 LGISVTGGVNTSVRH-GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 75
Query: 462 IISSGPLNMDLLISR 476
+ + + LL+ +
Sbjct: 76 TLRNTGQVVHLLLEK 90
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+PR PR IV +G GLGF IVGG+ GIFI IL G A G L
Sbjct: 8 IPREPRR-------IVIHRG--STGLGFNIVGGEXGE----GIFISFILAGGPADLSGEL 54
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
++GD+IL++NG + +H +A
Sbjct: 55 RKGDQILSVNGVDLRNASHEQA 76
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
G ++ I++GG A+ G L GD+I+SVNG LR + QA
Sbjct: 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 76
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+PR PR IV +G GLGF I+GG+D GIFI IL G A G L
Sbjct: 11 IPREPRR-------IVIHRG--STGLGFNIIGGEDGE----GIFISFILAGGPADLSGEL 57
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
++GD+IL++NG + +H +A
Sbjct: 58 RKGDQILSVNGVDLRNASHEQA 79
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
G ++ I++GG A+ G L GD+I+SVNG LR + QA
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 79
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 586 GKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GLG ++ G + A +GIF+KSI++ G A++DGRL+ D+++A+NG+ +
Sbjct: 19 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 78
Query: 645 EAI-SLFKTI-----KNGSISLHICRRL 666
EA+ +L +++ K G I L + RR+
Sbjct: 79 EAMETLRRSMSTEGNKRGMIQLIVARRI 106
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453
G V I++GG A K+G L + D++I+VNG+ L G
Sbjct: 40 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 74
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
+ IV E+G GLGF+I GG D+P GIFI I+ G AA DGRL D +L +
Sbjct: 5 YEEIVLERG--NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Query: 634 NGQVCHDLTHLEAISLFK 651
N ++ H A+ K
Sbjct: 63 NEVDVSEVVHSRAVEALK 80
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 586 GKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GLG ++ G + A +GIF+KSI++ G A++DGRL+ D+++A+NG+ +
Sbjct: 16 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 75
Query: 645 EAI-SLFKTI-----KNGSISLHICRRL 666
EA+ +L +++ K G I L + RR+
Sbjct: 76 EAMETLRRSMSTEGNKRGMIQLIVARRI 103
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453
G V I++GG A K+G L + D++I+VNG+ L G
Sbjct: 37 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 71
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
F+T+ E+G KG GF++ GG++ + +++ + ++G A G+++ GDEIL ING
Sbjct: 25 FYTVELERG--AKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEING 79
Query: 636 QVCHDLTHLEAISLFKTIKNG 656
+ ++ H AI L IKNG
Sbjct: 80 ETTKNMKHSRAIEL---IKNG 97
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
V + G AE+ G + +GDEI+ +NG+ + + ++A +I +G + L + R
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKR 107
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+PR PR IV +G GLGF IVGG+ GIFI IL G A G L
Sbjct: 3 IPREPRR-------IVIHRG--STGLGFNIVGGEXGE----GIFISFILAGGPADLSGEL 49
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
++GD+IL++NG + +H +A
Sbjct: 50 RKGDQILSVNGVDLRNASHEQA 71
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
G ++ I++GG A+ G L GD+I+SVNG LR + QA
Sbjct: 31 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 71
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDS-----PRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
T+V + G LGF I+GG+ S + GIF+ I+D+G AA++G L+ D I+
Sbjct: 11 TLVLHRDSGS--LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+NG+ TH +A+ FKT K I + + RR
Sbjct: 69 VNGRDLSRATHDQAVEAFKTAKE-PIVVQVLRR 100
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 409 IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
+ N + G V+ IV G A KEG L++ D II VNG+ L T QA
Sbjct: 32 VDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQA 82
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G GLGF IVGG+D GIF+ IL G A G L+ GD IL++NG + TH +
Sbjct: 21 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 76
Query: 646 AISLFK 651
A + K
Sbjct: 77 AAAALK 82
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
G V+ I++GG A+ G L GD I+SVNG LR T QA + +
Sbjct: 37 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAAL 81
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G GLGF IVGG+D GIF+ IL G A G L+ GD IL++NG + TH +
Sbjct: 24 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
Query: 646 AISLFK 651
A + K
Sbjct: 80 AAAALK 85
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
G V+ I++GG A+ G L GD I+SVNG LR T QA + +
Sbjct: 40 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAAL 84
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G GLGF IVGG+D GIF+ IL G A G L+ GD+IL++NG +H +
Sbjct: 12 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQ 67
Query: 646 AISLFK 651
A + K
Sbjct: 68 AAAALK 73
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
G V+ I++GG A+ G L+ GD+I+SVNG LRG + QA + +
Sbjct: 28 GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAAL 72
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 579 IVFEKGPGKKGLGFTIVGGK----DSPRGAI--GIFIKSILDNGQAAEDGRLKEGDEILA 632
+ +K PG++ LG +I GG +PR GIFI + G A DGRL+ G +L
Sbjct: 13 LCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
+N Q LTH EA+ L +++ + ++++ +C +S
Sbjct: 72 VNQQSLLGLTHGEAVQLLRSVGD-TLTVLVCDGFES 106
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 571 SAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEI 630
+A T T+ EK GLGF++ GGK S G + I I + + ++ GDEI
Sbjct: 25 TAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEI 82
Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR-LKSKKT 671
L + G LT EA ++ K + +G +++ I R+ L+SK+T
Sbjct: 83 LQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKET 124
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 383 DSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDE 442
+S T+ V + LG + K S G+ + I G +E+ ++ GDE
Sbjct: 23 ESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGD-KPLTINRIFKGAASEQSETVQPGDE 81
Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLN-MDLLISRTSLK 480
I+ + G ++GLT +A +II + P + ++I R SL+
Sbjct: 82 ILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ 120
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 587 KKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
++GLGF+I GGK S G GIF+ I + G A G L+ GD +L+ING + H
Sbjct: 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
A+SL T + +I+L + R S
Sbjct: 77 DHAVSLL-TAASPTIALLLEREAGS 100
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 402 LGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
LG IA K S+ G G V+ I GG A + G L++GD ++S+NG + A
Sbjct: 20 LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHA 79
Query: 460 KSIISSGPLNMDLLISRTS 478
S++++ + LL+ R +
Sbjct: 80 VSLLTAASPTIALLLEREA 98
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG ++ GG ++ GI++K+++ G A DGR+ +GD +LA+NG TH +A+
Sbjct: 18 LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 75
Query: 650 FKTIKNGSISLHI 662
+T++N +H+
Sbjct: 76 -ETLRNTGQVVHL 87
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
+ LGI + N+S + GG V ++ G AE +G + GD +++VNG L G T Q
Sbjct: 15 DNSLGISVTGGVNTSVRH-GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 73
Query: 459 AKSIISSGPLNMDLLISR 476
A + + + LL+ +
Sbjct: 74 AVETLRNTGQVVHLLLEK 91
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG ++ GG ++ GI++K+++ G A DGR+ +GD +LA+NG TH +A+
Sbjct: 18 LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 75
Query: 650 FKTIKNGSISLHI 662
+T++N +H+
Sbjct: 76 -ETLRNTGQVVHL 87
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
+ LGI + N+S + GG V ++ G AE +G + GD +++VNG L G T Q
Sbjct: 15 DNSLGISVTGGVNTSVRH-GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 73
Query: 459 AKSIISSGPLNMDLLISR 476
A + + + LL+ +
Sbjct: 74 AVETLRNTGQVVHLLLEK 91
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G G G T+ GG+D G + ++ +L +G A GRL+ GD +L ING+ LTH +
Sbjct: 20 GYAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQ 78
Query: 646 AISLFKTIKNGSISLHICRR 665
A+ + I+ G LH+ R
Sbjct: 79 AV---ERIRAGGPQLHLVIR 95
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
V ++ G A++ G LE+GD ++ +NG+ +GLT QA I +G + L+I R
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 586 GKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GLG ++ G K G +GIFIKSI+ G A +DGRL+ D+++A+NG+ ++
Sbjct: 35 GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNH 94
Query: 645 EAISLFKTIKN------GSISLHICRR 665
EA+ + + G I L I RR
Sbjct: 95 EAMETLRRSMSMEGNIRGMIQLVILRR 121
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453
LG+ + K+ G G + I+ GG A K+G L + D++I+VNG+ L G
Sbjct: 39 LGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLG 90
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+ G+G +IV K + + +GI++KS++ G A DGRL GD++L+++G+ L+ A
Sbjct: 20 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79
Query: 647 ISLFKTIKNGSISLHICRR 665
L T + ++L + ++
Sbjct: 80 AELM-TRTSSVVTLEVAKQ 97
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
+G+ I K + + +G +V + +V GG A+ +G L GD+++SV+G+ L GL+ +A
Sbjct: 23 MGLSIVAAKGAGQDKLGIYVKS-VVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAE 81
Query: 462 IIS 464
+++
Sbjct: 82 LMT 84
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+ G+G +IV K + + +GI++KS++ G A DGRL GD++L+++G+ L+ A
Sbjct: 20 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79
Query: 647 ISLFKTIKNGSISLHICRR 665
L T + ++L + ++
Sbjct: 80 AELM-TRTSSVVTLEVAKQ 97
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
+G+ I K + + +G +V + +V GG A+ +G L GD+++SV+G+ L GL+ +A
Sbjct: 23 MGLSIVAAKGAGQDKLGIYVKS-VVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAE 81
Query: 462 IIS 464
+++
Sbjct: 82 LMT 84
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+ G+G +IV K + + +GI++KS++ G A DGRL GD++L+++G+ L+ A
Sbjct: 14 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 73
Query: 647 ISLFKTIKNGSISLHICRR 665
L T + ++L + ++
Sbjct: 74 AELM-TRTSSVVTLEVAKQ 91
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
+G+ I K + + +G +V + +V GG A+ +G L GD+++SV+G+ L GL+ +A
Sbjct: 17 MGLSIVAAKGAGQDKLGIYVKS-VVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAE 75
Query: 462 IIS 464
+++
Sbjct: 76 LMT 78
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+ G+G +IV K + + +GI++KS++ G A DGRL GD++L+++G+ L+ A
Sbjct: 14 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 73
Query: 647 ISLFKTIKNGSISLHICRR 665
L T + ++L + ++
Sbjct: 74 AELM-TRTSSVVTLEVAKQ 91
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
+G+ I K + + +G +V + +V GG A+ +G L GD+++SV+G+ L GL+ +A
Sbjct: 17 MGLSIVAAKGAGQDKLGIYVKS-VVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAE 75
Query: 462 IIS 464
+++
Sbjct: 76 LMT 78
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ +K PG + LGF I GGK S +GIFI ++ + A G L+EGD++LA+N
Sbjct: 19 VTLKKPPGAQ-LGFNIRGGKAS---QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDF 73
Query: 639 HDLTHLEAISLFKTIKNGSISLHI 662
D+ H +A+ + KT + IS+ +
Sbjct: 74 QDIEHSKAVEILKTARE--ISMRV 95
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 583 KGPGKKGLGFTIV---GGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH 639
K G G+ T++ GG ++ GI++K+I+ G A DGR+ +GD +LA+NG
Sbjct: 12 KTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLE 71
Query: 640 DLTHLEAISLFKTIKNGSISLHI 662
TH +A+ +T++N +H+
Sbjct: 72 GATHKQAV---ETLRNTGQVVHL 91
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GG V I+ G AE +G + GD +++VNG L G T QA + + + LL+ +
Sbjct: 37 GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 95
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
H + K G GLGF++ GG D I + + NG A+++G +++G+E+L+ING+
Sbjct: 17 HVTILHKEEGA-GLGFSLAGGADLENKVITV--HRVFPNGLASQEGTIQKGNEVLSINGK 73
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRL 666
TH +A+++ + + ++ + R+L
Sbjct: 74 SLKGTTHHDALAILRQAREPRQAVIVTRKL 103
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
V + GLA +EG ++ G+E++S+NG+ L+G T A +I+
Sbjct: 46 VHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGG--KDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
H + +K GKK G IV G KDSP GIFIK I+ + A GRLK GD IL++
Sbjct: 7 HMVTLDK-TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 634 NGQVCHDLTHLEAISLFK 651
NG+ + T I L K
Sbjct: 66 NGKDVRNSTEQAVIDLIK 83
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
T+ + ++ F + I ++K+S G + IV A G L++GD I+S+NG
Sbjct: 10 TLDKTGKKSFG--ICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLI 474
+ +R T +I ++L I
Sbjct: 68 KDVRNSTEQAVIDLIKEADFKIELEI 93
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 573 ICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
+C H E GLGF IVGGK S G+ +++I+ G A DGRL+ GD IL
Sbjct: 11 VCWGHVEEVELINDGSGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILK 65
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
I G +T + + + N S+ + + R
Sbjct: 66 IGGTNVQGMTSEQVAQVLRNCGN-SVRMLVAR 96
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 415 GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
G G VV IV GGLA+++G L+ GD I+ + G ++G+T Q ++ + ++ +L+
Sbjct: 35 GKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLV 94
Query: 475 SR 476
+R
Sbjct: 95 AR 96
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
HT+ + PG G G I GG+D+P G I I +L G A +G+L+E D + +
Sbjct: 9 HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
NG ++ H A+ L K+ KN I++
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI+ G A DGR++ GD +L +N ++++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 78 LRDIVHKPGPIVLTVAK 94
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V +N +N LGI I + S+E GG + I+ GG +G +E GD ++ VN
Sbjct: 9 VTLNMEKYNF-LGISI--VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 451 LRGLTMTQAKSII 463
++ A ++
Sbjct: 66 FENMSNDDAVRVL 78
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
HT+ + PG G G I GG+D+P G I I +L G A +G+L+E D + +
Sbjct: 9 HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
NG ++ H A+ L K+ KN I++
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI+ G A DGR++ GD +L +N ++++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 78 LRDIVHKPGPIVLTVAK 94
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V +N +N LGI I + S+E GG + I+ GG +G +E GD ++ VN
Sbjct: 9 VTLNMEKYNF-LGISI--VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 451 LRGLTMTQAKSII 463
++ A ++
Sbjct: 66 FENMSNDDAVRVL 78
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI+ G A DGR++ GD +L +N ++++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 78 LRDIVHKPGPIVLTVAK 94
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V +N +N LGI I + S+E GG + I+ GG +G +E GD ++ VN
Sbjct: 9 VTLNMEKYNF-LGISI--VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 451 LRGLTMTQAKSII 463
++ A ++
Sbjct: 66 FENMSNDDAVRVL 78
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI+ G A DGR++ GD +L +N ++++ +A+ +
Sbjct: 12 LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 70
Query: 650 FKTI--KNGSISLHICR 664
+ I + G ISL + +
Sbjct: 71 LREIVSQTGPISLTVAK 87
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-- 459
LGI I + S++ GG + I+ GG +G +E GD ++ VN ++ A
Sbjct: 12 LGISI--VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVR 69
Query: 460 --KSIIS-SGPLNM 470
+ I+S +GP+++
Sbjct: 70 VLREIVSQTGPISL 83
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI+ G A DGR++ GD +L +N ++++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 78 LRDIVHKPGPIVLTVAK 94
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V +N +N LGI I + S+E GG + I+ GG +G +E GD ++ VN
Sbjct: 9 VTLNMEKYNF-LGISI--VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 451 LRGLTMTQAKSII 463
++ A ++
Sbjct: 66 FENMSNDDAVRVL 78
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI+ G A DGR++ GD +L +N ++++ +A+ +
Sbjct: 15 LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 73
Query: 650 FKTI--KNGSISLHICR 664
+ I + G ISL + +
Sbjct: 74 LREIVSQTGPISLTVAK 90
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-- 459
LGI I + S++ GG + I+ GG +G +E GD ++ VN ++ A
Sbjct: 15 LGISI--VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVR 72
Query: 460 --KSIIS-SGPLNM 470
+ I+S +GP+++
Sbjct: 73 VLREIVSQTGPISL 86
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 589 GLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
GLG IVGGK+ P G IG +I IL G A + G+L EG ++L NG T+ E
Sbjct: 31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV 90
Query: 647 ISLFKTIKNGSISLHICRRL 666
S+ I S IC RL
Sbjct: 91 QSI---ISQQSGEAEICVRL 107
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 402 LGIYIAKIKN--SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
LGI I K G IG ++ A I+ GG AE+ G L G +++ NG L T +
Sbjct: 32 LGIRIVGGKEIPGHSGEIGAYI-AKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV 90
Query: 460 KSIIS 464
+SIIS
Sbjct: 91 QSIIS 95
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
HT+ + PG G G I GG+D+P G I I +L G A +G+L+E D + +
Sbjct: 12 HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 68
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
NG ++ H A+ L K+ KN I++
Sbjct: 69 NGVSMDNVEHAFAVQQLRKSGKNAKITI 96
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
HT+ + PG G G I GG+D+P G I I +L G A +G+L+E D + +
Sbjct: 9 HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
NG ++ H A+ L K+ KN I++
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI+ G A DGR++ GD +L +N ++++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 78 LRDIVHKPGPIVLTVAK 94
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V +N +N LGI I + S+E GG + I+ GG +G +E GD ++ VN
Sbjct: 9 VTLNMEKYNF-LGISI--VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 451 LRGLTMTQAKSII 463
++ A ++
Sbjct: 66 FENMSNDDAVRVL 78
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
+GLG ++ GG + G+FI ++ GQA G L+ GDEI+ ING TH E I
Sbjct: 96 EGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVI 151
Query: 648 SLFKTIKNGSISL-HI 662
+L +T K SI + HI
Sbjct: 152 NLIRTEKTVSIKVRHI 167
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
G ++H++ GG A+ G L++GDEI+ +NG + T + ++I +
Sbjct: 111 GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT 156
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
G GLGF IVGG+D GIFI IL G A G L++GD I+++N
Sbjct: 13 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVN 57
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
G ++ I++GG A+ G L GD IISVN LR
Sbjct: 29 GIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
+T+ +K K+G G + GG+D+P G I I +L G A DG L+E D ++ +
Sbjct: 16 YTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
NG D+ H A+ + K+G I+ + +R
Sbjct: 73 NGTPMEDVLHSFAVQQLR--KSGKIAAIVVKR 102
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
++A+++ GG AEK G L +GD+I+S+NG L GL ++ +SII
Sbjct: 32 IIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 74
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAI 633
F + EK G+ LG IV +S G+I + I +++ G A + G+L GD+I++I
Sbjct: 2 FKDVFIEKQKGEI-LGVVIV---ESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSI 57
Query: 634 NGQVCHDLTHLEAISLFKTIKNGS-ISLHICR 664
NG L S+ K +KN S + L+I R
Sbjct: 58 NGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 588 KGLGFTIVGGKDS----PRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
K LG +IVGG+ G + GIFIK +L++ A ++G LK GD I+ ++G D
Sbjct: 16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75
Query: 642 THLEAISLFKTIKN 655
+H +A+ + N
Sbjct: 76 SHEQAVEAIRKAGN 89
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
G + H++ A K G L+ GD I+ V+G LR + QA I
Sbjct: 40 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI 84
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 588 KGLGFTIVGGKDS----PRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
K LG +IVGG+ G + GIFIK +L++ A ++G LK GD I+ ++G D
Sbjct: 36 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 95
Query: 642 THLEAISLFKTIKN 655
+H +A+ + N
Sbjct: 96 SHEQAVEAIRKAGN 109
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
G + H++ A K G L+ GD I+ V+G LR + QA I
Sbjct: 60 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI 104
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 588 KGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
+GLGF I+GGK+ SP I+I ++ G A G LK GD++L++NG H +
Sbjct: 16 EGLGFNIMGGKEQNSP-----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEK 70
Query: 646 AISLFKTIKNGSISL 660
A+ L K + GS+ L
Sbjct: 71 AVELLKAAQ-GSVKL 84
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 34/53 (64%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
++ ++ GG+A++ G L+ GD+++SVNG + G +A ++ + ++ L++
Sbjct: 34 ISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVV 86
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
+ LG TI GG + +GI+I + D G AE LK GD+IL +NG+ ++ H EA+
Sbjct: 32 RSLGLTIRGGAEY---GLGIYITGV-DPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAV 87
Query: 648 SLFKTIKNGSISLHICRRLKSKKT 671
L K+ ++ +++ RL +T
Sbjct: 88 RLLKSSRHLILTVKDVGRLPHART 111
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ K + LG +V D P G+FI +L+ G AA+DGRL D +LAING
Sbjct: 7 VALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLAING--- 59
Query: 639 HDLTH 643
HDL +
Sbjct: 60 HDLKY 64
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V +++RD E+LGI + + + G + ++ GGLA ++G L D ++++NG
Sbjct: 7 VALHKRDSGEQLGIKLVRRTDEP-----GVFILDLLEGGLAAQDGRLSSNDRVLAINGHD 61
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
L+ T A II + ++L I+R
Sbjct: 62 LKYGTPELAAQIIQASGERVNLTIAR 87
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
G GLGF IVGG+D GIFI IL G A G L++GD I+++N
Sbjct: 16 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVN 60
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
G ++ I++GG A+ G L GD IISVN LR
Sbjct: 32 GIFISFILAGGPADLSGELRKGDRIISVNSVDLR 65
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+ G GF I+GG D P I I +++ G A DGRL GDE++ ++G TH
Sbjct: 19 ESGFGFRILGG-DEP--GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75
Query: 647 ISLF-KTIKNGSISLHICRRLKS 668
I L +NG ++L + R++ S
Sbjct: 76 IDLMHHAARNGQVNLTVRRKVLS 98
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
++A+++ GG AEK G L +GD+I+S+NG L GL ++ +SII
Sbjct: 32 IIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 74
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAI 633
F + EK G+ LG IV +S G+I + I +++ G A + G+L GD+I++I
Sbjct: 2 FKDVFIEKQKGEI-LGVVIV---ESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSI 57
Query: 634 NGQVCHDLTHLEAISLFKTIKNGS-ISLHICR 664
NG L S+ K +KN S + L+I R
Sbjct: 58 NGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
IGI+I I N AA+DGR++EGD I+ ING EA++L + +N + SL I R
Sbjct: 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIAR 105
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 19/98 (19%)
Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
SQ+ + R D +++GIYI++I +S +A K+G + GD I
Sbjct: 30 SQDKLGLTVCYRTDDEDDIGIYISEIDPNS----------------IAAKDGRIREGDRI 73
Query: 444 ISVNGQRLRGLTMTQAKSIISSGP-LNMDLLISRTSLK 480
I +NG ++ +A ++++S N LLI+R L+
Sbjct: 74 IQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQ 109
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 588 KGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL- 644
KGLGF+I+ +D P ++ I I+S++ +G A G L GD ++++N + C D T L
Sbjct: 26 KGLGFSILDYQDPLDPTRSV-IVIRSLVADGVAERSGGLLPGDRLVSVN-EYCLDNTSLA 83
Query: 645 EAISLFKTIKNGSISLHIC 663
EA+ + K + G + L IC
Sbjct: 84 EAVEILKAVPPGLVHLGIC 102
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG I ++ + V+ +V+ G+AE+ G L GD ++SVN L ++ +A
Sbjct: 28 LGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVE 87
Query: 462 IISSGP 467
I+ + P
Sbjct: 88 ILKAVP 93
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
T++F+KG G+ ++ G GI++K+++ G A DGR+ +GD +LA+NG
Sbjct: 27 TVLFDKG----GVNTSVRHG--------GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 74
Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
TH +A+ +T++N +H+
Sbjct: 75 LEGATHKQAV---ETLRNTGQVVHL 96
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GG V ++ G AE +G + GD +++VNG L G T QA + + + LL+ +
Sbjct: 42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 100
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ + +GLGF+I GG + +GI++ S+++ G AE L+ GD+IL +N +
Sbjct: 12 VSLRRAKAHEGLGFSIRGGSEH---GVGIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSL 67
Query: 639 HDLTHLEAISLFKTIKNGSISLHICRRL 666
+TH EA+ K K +S++ R+
Sbjct: 68 ARVTHAEAVKALKGSKKLVLSVYSAGRI 95
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
+V + R +E LG I+ SE +G +V + + G LAEKEG L +GD+I+ VN +
Sbjct: 11 LVSLRRAKAHEGLGF---SIRGGSEHGVGIYV-SLVEPGSLAEKEG-LRVGDQILRVNDK 65
Query: 450 RLRGLTMTQA 459
L +T +A
Sbjct: 66 SLARVTHAEA 75
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 587 KKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
+ GLG +I+G G D+ +GIF+K++ + G A DGR++ D+I+ ++G +T
Sbjct: 14 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 73
Query: 644 LEAISLFKTIKNGSISLHICR 664
A ++ + K G++ I R
Sbjct: 74 NFAATVLRNTK-GNVRFVIGR 93
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G V + GG A+++G +++ D+I+ V+G L G+T A +++ + N+ +I R
Sbjct: 36 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 93
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
E VR+ + ++ LG YI ++ S G ++ +V GGLAE G L +
Sbjct: 29 ETHRRVRLCKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 88
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
DE+I VNG + G T+ Q ++ + N+
Sbjct: 89 DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 118
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
E VR+ + ++ LG YI ++ S G ++ +V GGLAE G L +
Sbjct: 1 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 60
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
DE+I VNG + G T+ Q ++ + N+
Sbjct: 61 DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 90
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
E VR+ + ++ LG YI ++ S G ++ +V GGLAE G L +
Sbjct: 29 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 88
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
DE+I VNG + G T+ Q ++ + N+
Sbjct: 89 DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 118
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
E VR+ + ++ LG YI ++ S G ++ +V GGLAE G L +
Sbjct: 3 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 62
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
DE+I VNG + G T+ Q ++ + N+
Sbjct: 63 DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 92
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
++A+++ GG AEK G L +GD+I+S+NG L GL ++ +SII
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 78
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 590 LGFTIVGGKDSPRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
LG IV +S G+I + I +++ G A + G+L GD+I++ING L
Sbjct: 19 LGVVIV---ESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQ 75
Query: 648 SLFKTIKN 655
S+ K +KN
Sbjct: 76 SIIKGLKN 83
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI G A DGR++ GD +L +N + ++ +A+ +
Sbjct: 15 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 74 LRDIVHKPGPIVLTVAK 90
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447
V +N +N LGI I + S+E GG + I GG +G +E GD ++ VN
Sbjct: 5 VTLNXEKYNF-LGISI--VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVN 58
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 587 KKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
+ GLG +I+G G D+ +GIF+K++ + G A DGR++ D+I+ ++G +T
Sbjct: 19 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
A ++ + K G++ I R S
Sbjct: 79 NFAATVLRNTK-GNVRFVIGREKPS 102
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G V + GG A+++G +++ D+I+ V+G L G+T A +++ + N+ +I R
Sbjct: 41 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI G A DGR++ GD +L +N + ++ +A+ +
Sbjct: 15 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 74 LRDIVHKPGPIVLTVAK 90
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447
V +N +N LGI I + S+E GG + I GG +G +E GD ++ VN
Sbjct: 5 VTLNXEKYNF-LGISI--VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVN 58
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +IVG + + RG GI+I SI G A DGR++ GD +L +N + ++ +A+ +
Sbjct: 13 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 71
Query: 650 FKTI--KNGSISLHICR 664
+ I K G I L + +
Sbjct: 72 LRDIVHKPGPIVLTVAK 88
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447
V +N +N LGI I + S+E GG + I GG +G +E GD ++ VN
Sbjct: 3 VTLNXEKYNF-LGISI--VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVN 56
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 582 EKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
+K PG+ LG T+ GG + I++ S+ G + DGR+K GD +L ++G ++
Sbjct: 31 QKDPGES-LGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEV 89
Query: 642 THLEAISLFK 651
+ EA++L K
Sbjct: 90 SRSEAVALLK 99
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE 434
+L +EN + +V + ++D E LG+ +A + E ++ +V++ + GG+ ++
Sbjct: 12 DLGTENLYFQSMHEKVVNI-QKDPGESLGMTVAGGASHREWDLPIYVIS-VEPGGVISRD 69
Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSII 463
G ++ GD +++V+G L ++ ++A +++
Sbjct: 70 GRIKTGDILLNVDGVELTEVSRSEAVALL 98
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 566 PRRPRSA-ICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
P+ P +A I I+ E KK +G + GGK++ G I + GQ A D RL
Sbjct: 6 PQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNN-HVTTGCVITHVYPEGQVAADKRL 64
Query: 625 KEGDEILAINGQVCH--DLTHLEAISLFKTIKNGSISLHICR 664
K D I ING H +T L+ LF T +++L + R
Sbjct: 65 KIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFR 106
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
L + GG DSP G + + ++ + G A G + +GDEI+AING++ D T EA
Sbjct: 30 LDLALEGGVDSPVGKV--VVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEA 84
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 417 IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
+G VV+ + GG AE+ G + GDEI+++NG+ + T+ +A++ +
Sbjct: 42 VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 588 KGLGFTIVGG-KDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+GLG TI G D GIF+KSI + DGR++ GD+I+A++G T+ +A
Sbjct: 15 QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQA 74
Query: 647 ISLFK 651
+ + +
Sbjct: 75 VEVLR 79
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LGI IA + G V I E +G +++GD+II+V+G L+G T QA
Sbjct: 17 LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVE 76
Query: 462 II 463
++
Sbjct: 77 VL 78
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 588 KGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
+GLG +I+G G D +GIF+K++ + G A DGR++ D ++ ++G +T
Sbjct: 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 74
Query: 645 EAISLFKTIKNGSISLHICR 664
A S+ + K G + I R
Sbjct: 75 FAASVLRNTK-GRVRFMIGR 93
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 399 NEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTM 456
+E LGI I + ++ + G V + GG A ++G +++ D ++ V+G L G+T
Sbjct: 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 73
Query: 457 TQAKSIISSGPLNMDLLISR 476
+ A S++ + + +I R
Sbjct: 74 SFAASVLRNTKGRVRFMIGR 93
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 587 KKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
+ GLG +I+G G D+ +GIF+K++ + G A DGR++ D+I+ ++G +T
Sbjct: 90 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 149
Query: 644 LEAISLFKTIKNGSISLHICR 664
A ++ + K G++ I R
Sbjct: 150 NFAATVLRNTK-GNVRFVIGR 169
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G V + GG A+++G +++ D+I+ V+G L G+T A +++ + N+ +I R
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 169
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
+G +I GG G++I + DN AA DG + GDEI +NG+ T +E +
Sbjct: 19 IGISIGGGAQY---CPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKM 75
Query: 650 FKTIKNGSISLH 661
+ +K G +++H
Sbjct: 76 IQEVK-GEVTIH 86
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
G + + A +G + GDEI VNG+ ++G T + +I
Sbjct: 32 GLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 76
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+ G GF I+GG + I+I I+ G A DGRL+ GDE+++++G +H
Sbjct: 12 ETGFGFRILGGNEPGEP---IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLV 68
Query: 647 ISLF-KTIKNGSISLHI 662
+ L + K G ++L +
Sbjct: 69 VQLMQQAAKQGHVNLTV 85
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453
+ HIV G A+ +G L GDE+ISV+G + G
Sbjct: 31 IGHIVPLGAADTDGRLRSGDELISVDGTPVIG 62
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 588 KGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
+GLG +I+G G D +GIF+K++ + G A DGR++ D ++ ++G +T
Sbjct: 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 150
Query: 645 EAISLFKTIKNGSISLHICR 664
A S+ + K G + I R
Sbjct: 151 FAASVLRNTK-GRVRFMIGR 169
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 399 NEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTM 456
+E LGI I + ++ + G V + GG A ++G +++ D ++ V+G L G+T
Sbjct: 90 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 149
Query: 457 TQAKSIISSGPLNMDLLISR 476
+ A S++ + + +I R
Sbjct: 150 SFAASVLRNTKGRVRFMIGR 169
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 588 KGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
+GLG +I+G G D +GIF+K++ + G A DGR++ D ++ ++G +T
Sbjct: 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 150
Query: 645 EAISLFKTIKNGSISLHICR 664
A S+ + K G + I R
Sbjct: 151 FAASVLRNTK-GRVRFMIGR 169
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 399 NEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTM 456
+E LGI I + ++ + G V + GG A ++G +++ D ++ V+G L G+T
Sbjct: 90 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 149
Query: 457 TQAKSIISSGPLNMDLLISR 476
+ A S++ + + +I R
Sbjct: 150 SFAASVLRNTKGRVRFMIGR 169
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI---AKIKNSSEG--NIGGFVVAHIVSGGLAEKEGCLELG 440
E VR+ + + LG YI + ++ + G + G ++ +V GGLA+ G L +
Sbjct: 28 ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVN 87
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
DE++ VNG + G ++ Q ++ + N+
Sbjct: 88 DEVLEVNGIEVSGKSLDQVTDMMIANSRNL 117
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 587 KKGLGFTIVGGKD---SPRG---AIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+K LGF I G +P G GIFI ++ G A G L DE+L +NG
Sbjct: 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNG 95
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ F KG +G + GG D +GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 5 VKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 55
Query: 639 HDLTHLEAISLFKTIKNG 656
++ EA+ + G
Sbjct: 56 TNIIREEAVLFLLDLPKG 73
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
F I K + GLG I+GG + G + ++I ++ G +DGRLK GD++++IN
Sbjct: 15 AFRVITVTK---ETGLGLKILGGINRNEGPL-VYIHEVIPGGDCYKDGRLKPGDQLVSIN 70
Query: 635 GQVCHDLTHLEAISLFKTIK 654
+ ++ EA S+ K
Sbjct: 71 KESMIGVSFEEAKSIITRAK 90
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG+ I N +EG + + ++ GG K+G L+ GD+++S+N + + G++ +AKS
Sbjct: 27 LGLKILGGINRNEGPL--VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKS 84
Query: 462 IIS 464
II+
Sbjct: 85 IIT 87
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
+GLG +I GGK+ + I I I A G L GD ILA+NG D H EA+
Sbjct: 14 EGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 70
Query: 648 SLFKTIKNGSISLHI 662
++ + G I +
Sbjct: 71 TILSQ-QRGEIEFEV 84
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464
+++ I G A++ G L +GD I++VNG LR +A +I+S
Sbjct: 31 LISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 74
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
+GLG +I GGK+ + I I I A G L GD ILA+NG D H EA+
Sbjct: 39 EGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 95
Query: 648 SLFKTIKNGSISLHI 662
++ + G I +
Sbjct: 96 TILSQ-QRGEIEFEV 109
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464
+++ I G A++ G L +GD I++VNG LR +A +I+S
Sbjct: 56 LISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
+GLG +I GGK+ + I I I A G L GD ILA+NG D H EA+
Sbjct: 21 EGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 77
Query: 648 SLFKTIKNGSISLHI 662
++ + G I +
Sbjct: 78 TILSQ-QRGEIEFEV 91
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464
+++ I G A++ G L +GD I++VNG LR +A +I+S
Sbjct: 38 LISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 81
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 582 EKGPGKKGLGFTI---VGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
EK P LGF+I VGG+ +P GIF+ + G A++ L+ GD+I+ NG
Sbjct: 18 EKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGY 72
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
++ H +A+SL KT +N ++ L I R + S
Sbjct: 73 SFINIEHGQAVSLLKTFQN-TVELIIVREVSS 103
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 582 EKGPGKKGLGFTI---VGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
EK P LGF+I VGG+ +P GIF+ + G A++ L+ GD+I+ NG
Sbjct: 10 EKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGY 64
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
++ H +A+SL KT +N ++ L I R + S
Sbjct: 65 SFINIEHGQAVSLLKTFQN-TVELIIVREVSS 95
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 590 LGFTIVGGKDSPR------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
LG +IVGG+ + GIFIK +L++ A + LK GD+IL ++G + +H
Sbjct: 29 LGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH 88
Query: 644 LEAISLFKTIKN 655
EA+ K N
Sbjct: 89 SEAVEAIKNAGN 100
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ F KG +G + GG D +GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 13 VKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 63
Query: 639 HDLTHLEAISLFKTIKNG 656
++ EA+ + G
Sbjct: 64 TNIIREEAVLFLLDLPKG 81
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 16/77 (20%)
Query: 414 EGNIGGFVV---AH-------------IVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
EGN GFV+ AH + GG A++EG ++ GD ++SV+G RL G T
Sbjct: 115 EGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA 174
Query: 458 QAKSIISSGPLNMDLLI 474
+A SI+ LLI
Sbjct: 175 EAMSILKQCGQEATLLI 191
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 590 LGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GF I GG R + + I + G A +G +K GD +L+++G TH EA+S
Sbjct: 119 FGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 178
Query: 649 LFK 651
+ K
Sbjct: 179 ILK 181
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 590 LGFTIVGGKDS---PRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
LG T+ GG D PR + ++ G AA +L GD I A+NG H E
Sbjct: 21 LGLTVSGGIDKDGKPR------VSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEI 74
Query: 647 ISLFKTI 653
ISL K +
Sbjct: 75 ISLLKNV 81
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
+ G GFT+ G + + ++S+ G A + G +KEGD I+ +NG + + +HLE
Sbjct: 18 QHGFGFTVSGDRI-------VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEV 69
Query: 647 ISLFKT 652
+ L K+
Sbjct: 70 VKLIKS 75
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 16/77 (20%)
Query: 414 EGNIGGFVV---AH-------------IVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
EGN GFV+ AH + GG A++EG ++ GD ++SV+G RL G T
Sbjct: 12 EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA 71
Query: 458 QAKSIISSGPLNMDLLI 474
+A SI+ LLI
Sbjct: 72 EAMSILKQCGQEAALLI 88
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 590 LGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GF I GG R + + I S+ G A +G +K GD +L+++G TH EA+S
Sbjct: 16 FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 75
Query: 649 LFK 651
+ K
Sbjct: 76 ILK 78
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
G + V + + LGI I + +E +++ + GGLAE+ G + +GD I+++
Sbjct: 3 GAIIYTVELKRYGGPLGITI----SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAI 58
Query: 447 NGQRLRGLTMTQA 459
N L+G +++A
Sbjct: 59 NSSSLKGKPLSEA 71
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 586 GKKGLGFTI---VGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
G LGF+I VGG+ +P GIF+ + G A++ L+ GD+I+ NG +
Sbjct: 1 GSPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 58
Query: 641 LTHLEAISLFKTIKNGSISLHICRRL 666
+ H +A+SL KT +N ++ L I R +
Sbjct: 59 IEHGQAVSLLKTFQN-TVELIIVREV 83
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
++A++++GG A + G L +GD+I+S+NG L GL + + II
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 261
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 581 FEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
EK G+ LG +V P + + ++++ G AA G+L GD+I++ING
Sbjct: 197 LEKHKGEI-LGVVVVESSILPT----VILANMMNGGPAARSGKLSIGDQIMSINGTSLVG 251
Query: 641 LTHLEAISLFKTIKN 655
L + K +KN
Sbjct: 252 LPLATCQGIIKGLKN 266
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464
+++ IV GG AEK G L GDE++ +NG +RG + + ++S
Sbjct: 51 IISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS 94
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 594 IVGGKDSPRGAI------GIFIKSILDNGQAAEDGRLKEGDEILAING 635
I +D P GA + I I+ G A + G L EGDE+L ING
Sbjct: 31 IEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEING 78
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH 661
++I + DN AA DG + GDEI +NG+ T +E + + +K G +++H
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIH 100
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT 455
RD LG+ + K + G + F+ + G LA+ G L GDE++ NG+ L+G T
Sbjct: 44 RDSGAMLGLKVVGGKMTESGRLCAFITK-VKKGSLADTVGHLRPGDEVLEWNGRLLQGAT 102
Query: 456 MTQAKSII--SSGPLNMDLLISRT 477
+ +II S ++L++SR+
Sbjct: 103 FEEVYNIILESKPEPQVELVVSRS 126
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
LG +VGGK + G + FI + A G L+ GDE+L NG++ T E ++
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666
IF+K + G A +DG L EGD IL ING V +++ +A L + + G + L + R L
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDL 81
Query: 667 K 667
+
Sbjct: 82 E 82
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
V + GLA K+G L GD I+ +NG +++T A+ +I + L++ R
Sbjct: 25 VKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLR 79
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 602 RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH 661
R A IF+K I + AA DG ++EGD +L ING V +++ +A +L + K G + +
Sbjct: 17 RLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMV 75
Query: 662 ICR 664
+ R
Sbjct: 76 VQR 78
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH 661
++I + DN AA DG + GDEI +NG+ T +E + + +K G +++H
Sbjct: 30 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIH 83
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 589 GLGFTIVGGKDSP--RGAI-GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
GLG +I GGK S +G GIFI + + G AA G ++ GD++L +NG H E
Sbjct: 15 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHE 73
Query: 646 AISLFK 651
A+ +
Sbjct: 74 AVEALR 79
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 402 LGIYIAKIKNSS--EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
LGI IA K S+ +G+ G ++ + G A + G + +GD+++ VNG L+G +A
Sbjct: 16 LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEA 74
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 602 RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH 661
R A IF+K I + AA DG ++EGD +L ING V +++ +A +L + K G + +
Sbjct: 18 RLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMV 76
Query: 662 ICR 664
+ R
Sbjct: 77 VQR 79
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH 661
++I + DN AA DG + GDEI +NG+ T +E + + +K G +++H
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIH 105
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ F KG +G + GG D +GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 33 VKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 83
Query: 639 HDLTHLEAISLFKTIKNG 656
++ EA+ + G
Sbjct: 84 TNIIREEAVLFLLDLPKG 101
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ F KG +G + GG D +GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 8 VKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 58
Query: 639 HDLTHLEAISLFKTIKNG 656
++ EA+ + G
Sbjct: 59 TNIIREEAVLFLLDLPKG 76
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
+E LGI I G GG V+ + G +A + G LE GD+++ NG LR T Q
Sbjct: 29 SEPLGISIV------SGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQ 81
Query: 459 AKSII 463
A+ II
Sbjct: 82 ARLII 86
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 590 LGFTI---VGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
LGF+I VGG+ +P GIF+ + G A++ L+ GD+I+ NG ++ H
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 61
Query: 645 EAISLFKTIKNGSISLHICRRL 666
+A+SL KT +N ++ L I R +
Sbjct: 62 QAVSLLKTFQN-TVELIIVREV 82
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIF----IKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
+G GF I+ + P I I I+D A +LK GD ILA+NGQ ++ H
Sbjct: 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH 81
Query: 644 LEAISLFK 651
+ + L K
Sbjct: 82 ADIVKLIK 89
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAH----IVSGGLAEKEGCLELGDEI 443
QT V R NE G I N E V H I+ G A++ L++GD I
Sbjct: 10 QTSDVVIHRKENEGFGFVIISSLNRPESG-STITVPHKIGRIIDGSPADRCAKLKVGDRI 68
Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
++VNGQ + + +I L++ L I
Sbjct: 69 LAVNGQSIINMPHADIVKLIKDAGLSVTLRI 99
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 589 GLGFTIVGGKDSP--RGAI-GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
GLG +I GGK S +G GIFI + + G AA G ++ GD++L +NG H E
Sbjct: 27 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHE 85
Query: 646 AISLFK 651
A+ +
Sbjct: 86 AVEALR 91
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 402 LGIYIAKIKNSS--EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
LGI IA K S+ +G+ G ++ + G A + G + +GD+++ VNG L+G +A
Sbjct: 28 LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEA 86
Query: 460 KSIISSGPLNMDLLISRTS 478
+ + + + R S
Sbjct: 87 VEALRGAGTAVQMRVWRES 105
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
G G T+ G D+P +F++S+ ++G A G ++ GD I+ +NG + HLE +
Sbjct: 19 GFGLTVSG--DNP-----VFVQSVKEDGAAMRAG-VQTGDRIIKVNGTLVTHSNHLEVVK 70
Query: 649 LFKT 652
L K+
Sbjct: 71 LIKS 74
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 586 GKKGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G GF I GG+D +P I + + + G+A +D L+ GD I+AING+ + H
Sbjct: 10 GPAPWGFRITGGRDFHTP-----IMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLH 63
Query: 644 LEAIS 648
EA S
Sbjct: 64 AEAQS 68
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 382 EDSQEGQTM---VRVNRR-----DFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
+ S+EG + V +N+R D LG+ + K + G +G F+ + G LA+
Sbjct: 11 QPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFIT-KVKKGSLADV 69
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSII--SSGPLNMDLLISRTS 478
G L GDE++ NG+ L G T + +II S +++++SR S
Sbjct: 70 VGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPS 116
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
LG +VGGK + G +G FI + A G L+ GDE+L NG+
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGK 85
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ F KG +G + GG D +GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 6 VKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 56
Query: 639 HDLTHLEAISLFKTIKNG 656
++ EA+ + G
Sbjct: 57 TNIIREEAVLFLLDLPKG 74
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 586 GKKGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G GF I GG+D +P I + + + G+A +D L+ GD I+AING+ + H
Sbjct: 9 GPAPWGFRITGGRDFHTP-----IMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLH 62
Query: 644 LEAIS 648
EA S
Sbjct: 63 AEAQS 67
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
V+A+++ GG AE+ G L +GD + ++NG L GL + ++ +
Sbjct: 40 VIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAV 82
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
IF+K + G A +DG L EGD IL ING V +++ +A L + + G + L + R
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLR 79
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLK 480
V + GLA K+G L GD I+ +NG +++T A+ +I + L++ R SL+
Sbjct: 25 VKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSLE 83
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 580 VFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH 639
VF G +GLG +I G P GIFI + +AE G L+ GD+I+ +NG
Sbjct: 19 VFISLVGSRGLGCSISSG---PIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFS 74
Query: 640 DLTHLEAISLFKTIKNGSISL 660
+L H EA+++ K+ ++ +IS+
Sbjct: 75 NLDHKEAVNVLKSSRSLTISI 95
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
G ++H+ G L+ + G LE+GD+I+ VNG L +A +++ S
Sbjct: 42 GIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKS 87
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 602 RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654
R A IF+K I + AA DG ++EGD +L ING V +++ +A +L + K
Sbjct: 20 RLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 72
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
LG +VGGK + G +G FI + A G L+ GDE+L NG+
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGK 85
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG+ + K + G +G F+ + G LA+ G L GDE++ NG+ L G T + +
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITK-VKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYN 97
Query: 462 II--SSGPLNMDLLISR 476
II S +++++SR
Sbjct: 98 IILESKSEPQVEIIVSR 114
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 581 FEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
EKGP G GF + G K G +G +I+ +++ G AE L GD ++ +NG+
Sbjct: 9 LEKGP--NGYGFHLHGEK----GKLGQYIR-LVEPGSPAEKAGLLAGDRLVEVNGENVEK 61
Query: 641 LTHLEAISLFKTIKNG 656
TH + +S + N
Sbjct: 62 ETHQQVVSRIRAALNA 77
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 581 FEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
EKGP G GF + G K G +G +I+ +++ G AE L GD ++ +NG+
Sbjct: 8 LEKGP--NGYGFHLHGEK----GKLGQYIR-LVEPGSPAEKAGLLAGDRLVEVNGENVEK 60
Query: 641 LTHLEAISLFKTIKNG 656
TH + +S + N
Sbjct: 61 ETHQQVVSRIRAALNA 76
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 581 FEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
EKGP G GF + G K G +G +I+ +++ G AE L GD ++ +NG+
Sbjct: 9 LEKGP--NGYGFHLHGEK----GKLGQYIR-LVEPGSPAEKAGLLAGDRLVEVNGENVEK 61
Query: 641 LTHLEAISLFKTIKNG 656
TH + +S + N
Sbjct: 62 ETHQQVVSRIRAALNA 77
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 581 FEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
EKGP G GF + G K G +G +I+ +++ G AE L GD ++ +NG+
Sbjct: 9 LEKGP--NGYGFHLHGEK----GKLGQYIR-LVEPGSPAEKAGLLAGDRLVEVNGENVEK 61
Query: 641 LTHLEAISLFKTIKNG 656
TH + +S + N
Sbjct: 62 ETHQQVVSRIRAALNA 77
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 401 ELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
ELGI I+ + G+ V++ I G +A + G LELGD++++++ RL +M A
Sbjct: 120 ELGITISSPSSRKPGD--PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAV 177
Query: 461 SII 463
I+
Sbjct: 178 QIL 180
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
T+ KGP G GFTI DSP G G +K I+D+ ++ LKEGD I+ +N +
Sbjct: 6 TVHIVKGP--MGFGFTIA---DSPGGG-GQRVKQIVDSPRSRG---LKEGDLIVEVNKKN 56
Query: 638 CHDLTHLEAIS-LFKTIKNGSISLHICRRLK 667
LTH + + L ++ K ++L + R+ +
Sbjct: 57 VQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 580 VFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH 639
VF G +GLG +I G P GIFI + +AE G L+ GD+I+ +NG
Sbjct: 5 VFISLVGSRGLGCSISSG---PIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFS 60
Query: 640 DLTHLEAISLFKTIKNGSISL 660
+L H EA+++ K+ ++ +IS+
Sbjct: 61 NLDHKEAVNVLKSSRSLTISI 81
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
G ++H+ G L+ + G LE+GD+I+ VNG L +A +++ S
Sbjct: 28 GIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKS 73
>pdb|3SOE|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of The Human
Membrane- Associated Guanylate Kinase, Ww And Pdz
Domain-Containing Protein 3 (Magi3)
Length = 113
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
TI KGP KG GF I DSP G +K ILD+ L++GD I I Q
Sbjct: 15 TIPLIKGP--KGFGFAIA---DSPTGQK---VKMILDSQWCQG---LQKGDIIKEIYHQN 63
Query: 638 CHDLTHLEAISLFKTIKNGS 657
+LTHL+ + + K G+
Sbjct: 64 VQNLTHLQVVEVLKQFPVGA 83
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-KSIISSGPLNMDLLISRT 477
G V + GG AE G L++GD+I+ VNG + +T QA K + + LL++R
Sbjct: 65 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
Query: 478 SLKKSNAENEYNES 491
SL+K+ ++ +E+
Sbjct: 124 SLQKAVQQSMLSET 137
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2 (Magi-2)
Length = 96
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G +G GFTI DSP G +K ILD Q L EGD I+ IN Q +L+H E
Sbjct: 19 GAQGFGFTI---ADSPTGQ---RVKQILDI-QGCPG--LCEGDLIVEINQQNVQNLSHTE 69
Query: 646 AISLFKTIKNGS 657
+ + K GS
Sbjct: 70 VVDILKDCPIGS 81
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 586 GKKGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G GF I GG+D +P I + + + G+A E L+ GD I+AINGQ ++ H
Sbjct: 14 GPAPWGFRISGGRDFHTP-----IIVTKVTERGKA-EAADLRPGDIIVAINGQSAENMLH 67
Query: 644 LEAIS 648
EA S
Sbjct: 68 AEAQS 72
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
H++ EK P + LGF++ GG + +GIF+ + + G +AE L GD+I +NG
Sbjct: 12 HSVRVEKSPAGR-LGFSVRGGSEH---GLGIFVSKV-EEGSSAERAGLCVGDKITEVNGL 66
Query: 637 VCHDLTHLEAISLFKTIKNGSISLH-ICRRLKS 668
T A+ + + S LH + RR+ S
Sbjct: 67 SLESTTMGSAVKVLTS----SSRLHMMVRRMGS 95
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 409 IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-KSIISSGP 467
++ SE +G FV + + G AE+ G L +GD+I VNG L TM A K + SS
Sbjct: 28 VRGGSEHGLGIFV-SKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSSSR 85
Query: 468 LNM 470
L+M
Sbjct: 86 LHM 88
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-KSIISSGPLNMDLLISRT 477
G V + GG AE G L++GD+I+ VNG + +T QA K + + LL++R
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
Query: 478 SLKKS 482
SL+K+
Sbjct: 113 SLQKA 117
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-KSIISSGPLNMDLLISRT 477
G V + GG AE G L++GD+I+ VNG + +T QA K + + LL++R
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
Query: 478 SLKKS 482
SL+K+
Sbjct: 113 SLQKA 117
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 591 GFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLF 650
GF + GGKD + + I S+ D G+A++ ++ GD +L+I+G +THLEA +
Sbjct: 18 GFRLQGGKDF---NMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKI 73
Query: 651 KTIKNGSISLHICRRLKSKKT 671
K GS+++ + R + K+
Sbjct: 74 KAC-TGSLNMTLQRASAAAKS 93
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-KSIISSGPLNMDLLISRT 477
G V + GG AE G L++GD+I+ VNG + +T QA K + + LL++R
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
Query: 478 SLKKS 482
SL+K+
Sbjct: 113 SLQKA 117
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G GF + GGKD + + I S+ D G+AA+ ++ GD +L+I+G +THLE
Sbjct: 11 GPAPWGFRLQGGKDF---NMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLE 66
Query: 646 AISLFKTIKNGSISLHICR 664
A + K GS+++ + R
Sbjct: 67 AQNKIKGC-TGSLNMTLQR 84
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGR-LKEGDEILAINGQVCHDLTHLEAI 647
GLG +I GG+++ + I I I G AA+ R L+ GD IL++NG TH +A+
Sbjct: 16 GLGISIKGGREN---RMPILISKIFP-GLAADQSRALRLGDAILSVNGTDLRQATHDQAV 71
Query: 648 SLFK 651
K
Sbjct: 72 QALK 75
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT 455
R +E G IK E + +++ I G A++ L LGD I+SVNG LR T
Sbjct: 8 RVVKQEAGGLGISIKGGRENRMP-ILISKIFPGLAADQSRALRLGDAILSVNGTDLRQAT 66
Query: 456 MTQA 459
QA
Sbjct: 67 HDQA 70
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GLG +I GG+++ + I I I A + L GD IL++NG+ TH EA+
Sbjct: 90 GLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQ 146
Query: 649 LFK 651
K
Sbjct: 147 ALK 149
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
+VA I+ GG+ ++G L +GDEI +NG + T+ Q + ++
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKML 70
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GLG +I GG+++ + I I I A + L GD IL++NG+ TH EA+
Sbjct: 13 GLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQ 69
Query: 649 LFK 651
K
Sbjct: 70 ALK 72
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GLG +I GG+++ + I I I A + L GD IL++NG+ TH EA+
Sbjct: 13 GLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQ 69
Query: 649 LFK 651
K
Sbjct: 70 ALK 72
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G++G GF + G K G G FI+ + + G AE L+ GD ++ +NG TH +
Sbjct: 10 GEQGYGFHLHGEK----GRRGQFIRRV-EPGSPAEAAALRAGDRLVEVNGVNVEGETHHQ 64
Query: 646 AISLFKTIK 654
+ K ++
Sbjct: 65 VVQRIKAVE 73
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 586 GKKGLGFTI----VGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
GKK GFT+ V DS + + + D G A+E G L++GD I +NG+ H L
Sbjct: 14 GKK-YGFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAG-LRQGDLITHVNGEPVHGL 71
Query: 642 THLEAISLFKTIKNGS 657
H E + L +K+G+
Sbjct: 72 VHTEVVELI--LKSGN 85
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GLG +I GG+++ + I I I A + L GD IL++NG+ TH EA+
Sbjct: 17 GLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQ 73
Query: 649 LFK 651
K
Sbjct: 74 ALK 76
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
R+ E LG+ EG G V+A I+ GG+ ++G L +GD I VNGQ
Sbjct: 13 RKTAGEHLGVTF-----RVEG--GELVIARILHGGMVAQQGLLHVGDIIKEVNGQ 60
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G GF + GGKD + + I + G+AA+ G + GD +L+I+G+ LTH+E
Sbjct: 11 GPAPWGFRLQGGKDF---NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIE 66
Query: 646 A 646
A
Sbjct: 67 A 67
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 581 FEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
KGP +G GF + K P G +I+S+ D G A L+ D ++ +NGQ
Sbjct: 10 LRKGP--QGYGFNLHSDKSRP----GQYIRSV-DPGSPAARSGLRAQDRLIEVNGQNVEG 62
Query: 641 LTHLEAISLFK 651
L H E ++ K
Sbjct: 63 LRHAEVVASIK 73
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 387 GQTMVRVNRRDFNEE-LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIIS 445
G V++ R N E LG I K + + G +VA I GG A++ G + +GDE+
Sbjct: 1 GSDSVKIIRLVKNREPLGATIKKDEQT-----GAIIVARIXRGGAADRSGLIHVGDELRE 55
Query: 446 VNG 448
VNG
Sbjct: 56 VNG 58
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
VA I+ GG+ ++G L +GDEI+ +NG + ++ Q
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQ 76
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
VA I+ GG+ ++G L +GDEI+ +NG + ++ Q
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQ 76
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 590 LGFTIVGGKDSPRG--AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
LG +I G +D A GI++KS++ AA DGR++ D+IL ++ + + +
Sbjct: 27 LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVV 86
Query: 648 SLFKTIKN 655
+ + N
Sbjct: 87 EVLRNAGN 94
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 584 GPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
GPG GF + GGKD + + I I +AA+ +L +GD ++AI+G +TH
Sbjct: 9 GPGP--WGFRLQGGKDF---NMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTH 62
Query: 644 LEAISLFKTIK-NGSISLHICRR 665
LEA + K+ N S++L +R
Sbjct: 63 LEAQNKIKSASYNLSLTLQKSKR 85
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
A G+++ S+L N AA GRL+ GD I AI+GQ
Sbjct: 4 AKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQ 34
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GLGF + P + I ++ G A + G ++ GD ILA+N + DL++ A+
Sbjct: 21 GLGFLVKERVSKPP----VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 76
Query: 649 LFKTIKNGSISLHICR 664
+ + I + + + I R
Sbjct: 77 VLRGIASETHVVLILR 92
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
+++ ++ GG AE+ G ++ GD I++VN + L L+ A ++
Sbjct: 36 IISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 78
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GLGF + P + I ++ G A + G ++ GD ILA+N + DL++ A+
Sbjct: 16 GLGFLVKERVSKPP----VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 71
Query: 649 LFKTIKNGSISLHICR 664
+ + I + + + I R
Sbjct: 72 VLRGIASETHVVLILR 87
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
+++ ++ GG AE+ G ++ GD I++VN + L L+ A ++
Sbjct: 31 IISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 73
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
GLGF + P + I ++ G A + G ++ GD ILA+N + DL++ A+
Sbjct: 14 GLGFLVKERVSKPP----VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 69
Query: 649 LFKTIKNGSISLHICR 664
+ + I + + + I R
Sbjct: 70 VLRGIASETHVVLILR 85
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
+++ ++ GG AE+ G ++ GD I++VN + L L+ A ++
Sbjct: 29 IISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 71
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 583 KGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLT 642
+GPG GF +VGGKD + S + G A L GD I AI+G+ ++T
Sbjct: 10 QGPGP--WGFRLVGGKDFEQP----LAISRVTPGSKAALANLCIGDVITAIDGENTSNMT 63
Query: 643 HLEAISLFK 651
HLEA + K
Sbjct: 64 HLEAQNRIK 72
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 588 KGLGFTIVG--GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
+ LG IVG G A GI++KS++ A +G ++ D+I+A++G + +
Sbjct: 27 QSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHD 86
Query: 646 AISLFKTIKNGSISLHICRRLKSKKT 671
+ + + + L + RR S T
Sbjct: 87 VVEVLRNAGQ-VVHLTLVRRKTSSST 111
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 391 VRVNRRDFNEELGIYI-AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
V + R+D + LGI I + S G G V ++ G A G +++ D+I++V+G
Sbjct: 19 VELVRKD-GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV 77
Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENE 487
++G ++ + + L + R S + E
Sbjct: 78 NIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLE 115
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 584 GPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
GPG GF + GGKD + + I I +AA+ +L +GD ++AI+G +TH
Sbjct: 16 GPGP--WGFRLQGGKDF---NMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTH 69
Query: 644 LEAISLFKT 652
LEA + K+
Sbjct: 70 LEAQNKIKS 78
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 586 GKKGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
G GF +VGG+D +P S + G A L GD I AING+ +TH
Sbjct: 10 GPSPWGFRLVGGRDFSAP------LTISRVHAGSKAALAALCPGDLIQAINGESTELMTH 63
Query: 644 LEAISLFK 651
LEA + K
Sbjct: 64 LEAQNRIK 71
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
V+ ++ GG A++ G + GD I+ VNG + G T Q +I +G + L +
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
IF+K + + G A E G L GD I+ +NG+ T+ + I+L I+N +L +
Sbjct: 63 IFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIAL---IQNSDTTLEL 114
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 613 LDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS 657
++ G A LK GD I ING+ H L H E I L +K+G+
Sbjct: 40 VEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELL--LKSGN 82
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
V+ ++ GG A++ G + GD I+ VNG + G T Q +I +G + L +
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
P +PR +V +KG G GF + G + G IK I + G AE LK
Sbjct: 3 PHQPR-------VVVIKKG--SNGYGFYLRAGPEQK----GQIIKDI-EPGSPAEAAGLK 48
Query: 626 EGDEILAINGQVCHDLTHLEAISLFK 651
D ++A+NG+ L H + + +
Sbjct: 49 NNDLVVAVNGKSVEALDHDGVVEMIR 74
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
V+ ++ GG A++ G + GD I+ VNG + G T Q +I +G + L +
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G GF +VGG+D S + G A L GD I AING+ +THLE
Sbjct: 16 GPSPWGFRLVGGRDFS----APLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLE 71
Query: 646 AISLFK 651
A + K
Sbjct: 72 AQNRIK 77
>pdb|2QKV|A Chain A, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
pdb|2QKV|B Chain B, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
Length = 96
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
PR+++ F+ + +K GK+ LG ++ SP IG I ++ D +L+ GD
Sbjct: 3 PRNSLEKFNVDLMKKA-GKE-LGLSL-----SPN-EIGCTIADLIQGQYPEIDSKLQRGD 54
Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
I NG L + +LFK NG +S+ + R
Sbjct: 55 IITKFNGDALEGLPFQVSYALFKG-ANGKVSMEVTR 89
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
G V + GG AE G L++GD+I+ VNG + +T QA+
Sbjct: 55 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQAR 95
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
G V + GG AE G L++GD+I+ VNG + +T QA+
Sbjct: 46 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQAR 86
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
G V + GG AE G L++GD+I+ VNG + +T QA+
Sbjct: 44 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQAR 84
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 591 GFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLF 650
GFT+ GG + + + I D G+AA +++ GDE++ ING + + EA+ L
Sbjct: 24 GFTLKGGLEHCEP---LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILI 79
Query: 651 K 651
K
Sbjct: 80 K 80
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution
Length = 646
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 535 NKLLRKAIISTGSIS--GDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKG--L 590
NK+ +K IIS +I+ D + ++ T+ + R + I T + G+ G +
Sbjct: 533 NKVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETGRQI 592
Query: 591 GFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL--KEGDEILAINGQVCHDL 641
G+ I KD+P + I +K + D G A+ + ++ K DE+ NG +D+
Sbjct: 593 GWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELYE-NGNKKYDI 644
>pdb|1VQQ|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1VQQ|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|4DKI|A Chain A, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
pdb|4DKI|B Chain B, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
Length = 646
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 535 NKLLRKAIISTGSIS--GDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKG--L 590
NK+ +K IIS +I+ D + ++ T+ + R + I T + G+ G +
Sbjct: 533 NKVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETGRQI 592
Query: 591 GFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL--KEGDEILAINGQVCHDL 641
G+ I KD+P + I +K + D G A+ + ++ K DE+ NG +D+
Sbjct: 593 GWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELYE-NGNKKYDI 644
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G G GF + G + G IK I + G AE LK D ++A+NG+ L H
Sbjct: 11 GSNGYGFYLRAGPEQK----GQIIKDI-EPGSPAEAAGLKNNDLVVAVNGKSVEALDHDG 65
Query: 646 AISLFK 651
+ + +
Sbjct: 66 VVEMIR 71
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 431 AEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468
AE+ G L++GD ++S+NG TM +A ++ L
Sbjct: 58 AERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAAL 95
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 613 LDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISL 660
+++G A++ L+ GD I ING+ L H++ + L +K+G+ ISL
Sbjct: 41 VEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELL--LKSGNKISL 87
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 535 NKLLRKAIISTGSIS--GDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKG--L 590
NK+ +K IIS +I+ D + ++ T+ + R + I T + G+ G +
Sbjct: 533 NKVWKKNIISKENINLLTDGXQQVVNKTHKEDIYRSYANLIGKSGTAELKXKQGETGRQI 592
Query: 591 GFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL--KEGDEILAINGQVCHDL 641
G+ I KD+P I +K + D G A+ + ++ K DE+ NG +D+
Sbjct: 593 GWFISYDKDNPNXXXAINVKDVQDKGXASYNAKISGKVYDELYE-NGNKKYDI 644
>pdb|3KG6|A Chain A, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|B Chain B, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|C Chain C, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|D Chain D, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
Length = 285
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 18/86 (20%)
Query: 259 QSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFR-NSPSKSENGQLPNFQIQSY 317
QSL++P E I T TV S +E S+ KF SPS+ EN Q P + + +
Sbjct: 77 QSLVIPETE----------IKTVQTVVSFAENNSY--KFEIFSPSEGENQQTPQWVLHAQ 124
Query: 318 G--YDSPILSSRSQNSSMISEKYNLD 341
G Y P +R+ + + EKY +
Sbjct: 125 GKIYTEP---TRNSQAKIDLEKYQAE 147
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
G G GF + G + G IK I + G AE LK D ++A+NG+ L H
Sbjct: 15 GSNGYGFYLRAGPEQK----GQIIKDI-EPGSPAEAAGLKNNDLVVAVNGKSVEALDHDG 69
Query: 646 AISLFK 651
+ + +
Sbjct: 70 VVEMIR 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,967,684
Number of Sequences: 62578
Number of extensions: 721189
Number of successful extensions: 1893
Number of sequences better than 100.0: 255
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1452
Number of HSP's gapped (non-prelim): 470
length of query: 671
length of database: 14,973,337
effective HSP length: 105
effective length of query: 566
effective length of database: 8,402,647
effective search space: 4755898202
effective search space used: 4755898202
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)