Query psy1156
Match_columns 671
No_of_seqs 336 out of 2371
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 21:36:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.9 3.1E-24 6.7E-29 238.1 19.2 231 385-664 751-981 (984)
2 KOG3209|consensus 99.9 3.6E-21 7.9E-26 214.0 21.4 187 387-665 649-837 (984)
3 KOG3580|consensus 99.8 6.6E-19 1.4E-23 193.0 17.7 260 387-667 8-280 (1027)
4 KOG3580|consensus 99.8 2.9E-18 6.2E-23 188.0 16.7 261 386-665 197-489 (1027)
5 PRK10139 serine endoprotease; 99.6 3.4E-14 7.4E-19 158.7 16.1 196 369-667 249-448 (455)
6 KOG3605|consensus 99.6 6.2E-15 1.3E-19 163.9 9.9 165 385-660 643-809 (829)
7 TIGR02037 degP_htrA_DO peripla 99.5 4.3E-14 9.3E-19 156.6 14.8 193 371-667 218-422 (428)
8 PRK10942 serine endoprotease; 99.5 6.3E-14 1.4E-18 157.3 16.0 193 369-667 270-466 (473)
9 KOG3571|consensus 99.5 4.7E-14 1E-18 153.5 13.8 205 254-477 100-339 (626)
10 PF00595 PDZ: PDZ domain (Also 99.4 7.9E-13 1.7E-17 113.1 11.0 81 578-663 1-81 (81)
11 PRK10779 zinc metallopeptidase 99.4 1.7E-12 3.6E-17 145.0 15.8 153 420-667 128-280 (449)
12 PF00595 PDZ: PDZ domain (Also 99.3 8.9E-12 1.9E-16 106.6 10.9 81 390-475 1-81 (81)
13 KOG3550|consensus 99.3 8.5E-12 1.8E-16 118.1 8.4 83 576-664 91-173 (207)
14 TIGR00054 RIP metalloprotease 99.3 4.7E-11 1E-15 132.4 14.9 135 418-667 128-262 (420)
15 KOG3550|consensus 99.1 1.1E-10 2.5E-15 110.5 7.6 89 385-479 88-176 (207)
16 KOG3549|consensus 99.0 5.4E-10 1.2E-14 117.7 7.9 88 384-476 51-138 (505)
17 cd00992 PDZ_signaling PDZ doma 99.0 4.7E-09 1E-13 88.9 11.6 80 577-662 2-81 (82)
18 cd00136 PDZ PDZ domain, also c 99.0 3.5E-09 7.7E-14 87.4 9.9 68 589-662 2-69 (70)
19 smart00228 PDZ Domain present 98.9 1.5E-08 3.2E-13 85.8 12.3 81 578-665 4-84 (85)
20 KOG3551|consensus 98.9 1.5E-09 3.3E-14 115.7 6.7 83 389-476 86-168 (506)
21 KOG3551|consensus 98.9 1.9E-09 4.1E-14 115.1 7.1 86 573-663 82-167 (506)
22 KOG3549|consensus 98.9 2.8E-09 6E-14 112.5 7.7 84 575-663 54-137 (505)
23 cd00992 PDZ_signaling PDZ doma 98.9 1.9E-08 4.2E-13 85.1 11.2 80 389-474 2-81 (82)
24 PF13180 PDZ_2: PDZ domain; PD 98.9 1.1E-08 2.4E-13 87.9 9.1 72 589-667 2-74 (82)
25 smart00228 PDZ Domain present 98.9 3.7E-08 8E-13 83.4 11.9 82 389-477 3-84 (85)
26 KOG3553|consensus 98.8 1.1E-09 2.4E-14 97.3 1.6 75 589-666 36-117 (124)
27 KOG1892|consensus 98.8 9.3E-09 2E-13 118.7 7.5 90 574-667 932-1021(1629)
28 cd00136 PDZ PDZ domain, also c 98.8 5.1E-08 1.1E-12 80.5 9.2 67 401-474 2-69 (70)
29 cd00988 PDZ_CTP_protease PDZ d 98.7 4.5E-08 9.7E-13 83.9 8.9 71 588-665 2-72 (85)
30 KOG3571|consensus 98.7 3E-08 6.5E-13 109.0 8.5 88 575-664 249-338 (626)
31 PF13180 PDZ_2: PDZ domain; PD 98.7 7.7E-08 1.7E-12 82.7 7.8 73 401-481 2-76 (82)
32 KOG1892|consensus 98.6 6.5E-08 1.4E-12 111.9 8.8 91 385-479 931-1021(1629)
33 KOG3553|consensus 98.6 1.8E-08 3.8E-13 89.8 1.5 76 401-478 36-117 (124)
34 KOG3606|consensus 98.5 1.5E-07 3.3E-12 96.8 6.7 92 385-476 156-252 (358)
35 cd00988 PDZ_CTP_protease PDZ d 98.5 6.4E-07 1.4E-11 76.7 9.1 70 400-477 2-72 (85)
36 KOG3552|consensus 98.5 1.7E-07 3.6E-12 108.7 6.9 78 575-665 55-132 (1298)
37 cd00989 PDZ_metalloprotease PD 98.5 9.8E-07 2.1E-11 74.4 9.3 59 606-667 13-71 (79)
38 cd00991 PDZ_archaeal_metallopr 98.5 6.5E-07 1.4E-11 76.7 8.3 60 605-667 10-70 (79)
39 cd00990 PDZ_glycyl_aminopeptid 98.4 2.2E-06 4.8E-11 72.6 8.7 66 590-666 3-68 (80)
40 cd00986 PDZ_LON_protease PDZ d 98.3 3E-06 6.6E-11 72.1 8.0 59 605-667 8-67 (79)
41 KOG3651|consensus 98.3 2.4E-06 5.2E-11 89.3 8.4 82 390-476 7-88 (429)
42 cd00987 PDZ_serine_protease PD 98.2 4.6E-06 1E-10 71.8 8.5 60 605-667 24-84 (90)
43 KOG0609|consensus 98.2 3.4E-06 7.4E-11 94.3 8.8 87 384-477 119-205 (542)
44 KOG3651|consensus 98.2 4.3E-06 9.3E-11 87.5 8.9 81 578-663 7-87 (429)
45 PLN00049 carboxyl-terminal pro 98.2 5.4E-06 1.2E-10 91.5 10.2 78 588-666 85-162 (389)
46 KOG3542|consensus 98.2 2.1E-06 4.6E-11 97.0 6.4 84 575-664 535-618 (1283)
47 cd00990 PDZ_glycyl_aminopeptid 98.2 7.2E-06 1.6E-10 69.4 8.2 67 402-479 3-69 (80)
48 TIGR00225 prc C-terminal pepti 98.2 5.5E-06 1.2E-10 89.5 9.0 73 588-667 51-123 (334)
49 KOG3552|consensus 98.2 1.8E-06 3.8E-11 100.5 5.0 78 387-477 55-132 (1298)
50 cd00991 PDZ_archaeal_metallopr 98.1 9.6E-06 2.1E-10 69.4 8.4 60 418-480 10-71 (79)
51 COG0793 Prc Periplasmic protea 98.1 6.5E-06 1.4E-10 91.4 9.3 74 587-666 99-172 (406)
52 KOG3606|consensus 98.1 3.7E-06 8.1E-11 86.8 6.6 85 577-662 160-250 (358)
53 KOG4371|consensus 98.1 1.1E-05 2.4E-10 95.0 10.1 181 389-665 1149-1329(1332)
54 cd00989 PDZ_metalloprotease PD 98.1 1.8E-05 3.9E-10 66.7 8.3 59 418-479 12-71 (79)
55 KOG3605|consensus 98.0 8.1E-06 1.8E-10 92.5 6.8 88 575-665 645-734 (829)
56 PRK11186 carboxy-terminal prot 98.0 2.1E-05 4.6E-10 92.0 8.9 73 588-666 244-321 (667)
57 KOG0609|consensus 97.9 2.4E-05 5.2E-10 87.7 8.4 84 575-665 122-205 (542)
58 TIGR00225 prc C-terminal pepti 97.9 3.4E-05 7.3E-10 83.4 9.2 73 400-480 51-124 (334)
59 PLN00049 carboxyl-terminal pro 97.9 4.4E-05 9.6E-10 84.3 10.1 78 400-479 85-163 (389)
60 cd00987 PDZ_serine_protease PD 97.9 3.5E-05 7.7E-10 66.2 7.3 59 418-479 24-84 (90)
61 KOG3542|consensus 97.9 2.2E-05 4.8E-10 89.0 7.1 87 385-477 533-619 (1283)
62 TIGR01713 typeII_sec_gspC gene 97.9 5.4E-05 1.2E-09 79.4 9.4 60 605-667 191-251 (259)
63 COG0793 Prc Periplasmic protea 97.8 5.4E-05 1.2E-09 84.2 8.9 74 398-478 98-172 (406)
64 cd00986 PDZ_LON_protease PDZ d 97.8 6.3E-05 1.4E-09 64.0 7.0 59 418-480 8-68 (79)
65 PRK10139 serine endoprotease; 97.7 8E-05 1.7E-09 84.0 8.4 60 605-667 290-350 (455)
66 TIGR02038 protease_degS peripl 97.7 7.7E-05 1.7E-09 81.4 8.1 60 605-667 278-338 (351)
67 TIGR02037 degP_htrA_DO peripla 97.7 9.3E-05 2E-09 82.6 7.9 60 605-667 257-317 (428)
68 PRK10898 serine endoprotease; 97.7 6.6E-05 1.4E-09 82.0 6.3 98 370-480 239-340 (353)
69 PRK11186 carboxy-terminal prot 97.6 0.00012 2.7E-09 85.7 8.6 71 400-477 244-320 (667)
70 PRK10898 serine endoprotease; 97.6 0.00014 3E-09 79.5 8.3 60 605-667 279-339 (353)
71 TIGR02038 protease_degS peripl 97.6 6.7E-05 1.4E-09 81.8 5.4 98 370-480 238-339 (351)
72 TIGR01713 typeII_sec_gspC gene 97.6 0.00022 4.8E-09 74.9 8.2 60 418-480 191-252 (259)
73 PRK10942 serine endoprotease; 97.5 0.00022 4.8E-09 80.9 8.6 60 605-667 311-371 (473)
74 TIGR02860 spore_IV_B stage IV 97.4 0.00062 1.4E-08 75.3 9.2 69 587-666 95-171 (402)
75 PRK10779 zinc metallopeptidase 97.4 0.00036 7.9E-09 78.5 7.4 58 607-667 128-186 (449)
76 PF04495 GRASP55_65: GRASP55/6 97.3 0.0008 1.7E-08 64.4 8.1 77 587-666 25-102 (138)
77 TIGR00054 RIP metalloprotease 97.2 0.00075 1.6E-08 75.5 7.4 59 605-667 128-186 (420)
78 KOG3938|consensus 97.2 0.00075 1.6E-08 70.1 6.6 87 383-477 122-210 (334)
79 PF04495 GRASP55_65: GRASP55/6 97.2 0.0027 5.8E-08 60.8 10.0 89 386-478 9-102 (138)
80 KOG3834|consensus 96.9 0.009 2E-07 65.9 12.6 58 418-476 15-72 (462)
81 PF14685 Tricorn_PDZ: Tricorn 96.9 0.0034 7.3E-08 55.7 7.2 60 606-667 13-81 (88)
82 COG0265 DegQ Trypsin-like seri 96.9 0.0017 3.6E-08 70.5 6.5 103 369-482 231-333 (347)
83 KOG3938|consensus 96.8 0.0021 4.5E-08 66.9 6.2 82 577-665 128-210 (334)
84 KOG1421|consensus 96.8 0.015 3.3E-07 67.2 13.1 94 381-480 261-362 (955)
85 KOG0606|consensus 96.6 0.0029 6.3E-08 76.4 6.4 79 578-662 629-713 (1205)
86 KOG1421|consensus 96.4 0.013 2.7E-07 67.8 9.2 49 605-657 862-910 (955)
87 TIGR02860 spore_IV_B stage IV 96.3 0.014 2.9E-07 65.0 8.7 71 399-481 95-174 (402)
88 KOG4407|consensus 96.3 0.0053 1.2E-07 74.5 5.7 56 607-664 145-200 (1973)
89 COG0265 DegQ Trypsin-like seri 96.2 0.013 2.8E-07 63.6 8.1 60 605-667 270-330 (347)
90 TIGR03279 cyano_FeS_chp putati 96.2 0.0047 1E-07 69.1 4.7 40 609-651 2-41 (433)
91 PF14685 Tricorn_PDZ: Tricorn 96.2 0.03 6.5E-07 49.7 8.7 70 401-479 2-81 (88)
92 KOG3532|consensus 96.0 0.018 3.8E-07 66.5 7.9 71 587-666 385-455 (1051)
93 KOG1738|consensus 96.0 0.0077 1.7E-07 69.1 5.0 75 587-667 212-286 (638)
94 TIGR03279 cyano_FeS_chp putati 96.0 0.0065 1.4E-07 67.9 4.4 53 422-479 2-55 (433)
95 KOG3129|consensus 95.8 0.025 5.3E-07 57.4 6.8 59 607-666 141-200 (231)
96 COG3975 Predicted protease wit 95.7 0.02 4.4E-07 64.8 6.5 69 396-480 447-515 (558)
97 COG3975 Predicted protease wit 95.6 0.025 5.5E-07 64.1 6.8 42 588-636 451-492 (558)
98 KOG1738|consensus 95.5 0.012 2.5E-07 67.7 4.0 79 391-475 204-282 (638)
99 KOG3129|consensus 95.4 0.032 7E-07 56.6 6.3 63 419-482 140-204 (231)
100 PRK09681 putative type II secr 95.2 0.048 1E-06 57.9 7.1 46 619-667 221-267 (276)
101 KOG0606|consensus 95.2 0.041 8.9E-07 66.9 7.3 81 391-475 630-714 (1205)
102 COG3480 SdrC Predicted secrete 94.7 0.085 1.8E-06 56.7 7.4 56 606-665 131-187 (342)
103 COG3031 PulC Type II secretory 93.9 0.18 3.9E-06 52.3 7.6 71 579-669 198-269 (275)
104 KOG3532|consensus 93.8 0.14 3.1E-06 59.4 7.2 69 399-476 385-453 (1051)
105 PRK09681 putative type II secr 93.8 0.12 2.6E-06 55.0 6.2 50 430-482 219-270 (276)
106 KOG1320|consensus 93.5 0.15 3.3E-06 57.7 6.8 60 605-667 398-458 (473)
107 PF12812 PDZ_1: PDZ-like domai 92.2 0.38 8.3E-06 41.7 6.0 46 606-654 31-76 (78)
108 COG3480 SdrC Predicted secrete 92.1 0.28 6E-06 52.9 6.0 58 418-479 130-189 (342)
109 KOG4371|consensus 90.2 0.33 7.1E-06 58.9 4.7 84 576-669 1148-1231(1332)
110 KOG1320|consensus 89.8 0.59 1.3E-05 53.1 6.2 59 418-479 398-458 (473)
111 COG3031 PulC Type II secretory 89.4 1.1 2.3E-05 46.8 7.0 73 388-481 195-269 (275)
112 COG0750 Predicted membrane-ass 85.3 2.5 5.5E-05 46.1 7.7 54 608-664 132-188 (375)
113 KOG4407|consensus 71.3 1.8 3.9E-05 54.0 1.1 58 418-476 143-200 (1973)
114 PF12812 PDZ_1: PDZ-like domai 66.8 13 0.00028 32.3 5.2 45 420-467 32-76 (78)
115 COG0750 Predicted membrane-ass 63.4 14 0.00031 40.2 6.1 54 421-476 132-188 (375)
116 KOG2921|consensus 59.3 11 0.00023 42.2 4.1 46 605-652 220-265 (484)
117 KOG0792|consensus 51.3 14 0.0003 45.8 3.6 68 587-654 715-798 (1144)
118 KOG3834|consensus 49.8 22 0.00048 40.2 4.6 60 605-666 15-74 (462)
119 PF11874 DUF3394: Domain of un 39.3 42 0.00092 33.9 4.4 39 589-634 112-150 (183)
120 KOG0792|consensus 38.1 14 0.0003 45.8 1.0 68 399-466 715-797 (1144)
121 PF11874 DUF3394: Domain of un 36.9 46 0.001 33.6 4.3 37 402-446 113-149 (183)
122 PRK13810 orotate phosphoribosy 25.8 1.1E+02 0.0024 30.9 4.8 33 622-654 117-149 (187)
123 PF15138 Syncollin: Syncollin 21.6 49 0.0011 30.6 1.3 20 167-186 77-96 (112)
124 KOG2921|consensus 21.0 81 0.0018 35.6 3.0 44 418-464 220-264 (484)
No 1
>KOG3209|consensus
Probab=99.92 E-value=3.1e-24 Score=238.11 Aligned_cols=231 Identities=28% Similarity=0.389 Sum_probs=157.7
Q ss_pred CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464 (671)
Q Consensus 385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~ 464 (671)
..+...|.|.+. .+++|||.|......+ +.-|.+|.+||||+++|+|++||+|++|||+++..++|.+.+.+++
T Consensus 751 ~~~~yDV~lhR~-ENeGFGFVi~sS~~kp-----~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIK 824 (984)
T KOG3209|consen 751 PSGPYDVVLHRK-ENEGFGFVIMSSQNKP-----ESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIK 824 (984)
T ss_pred CCCCeeeEEecc-cCCceeEEEEecccCC-----CCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHH
Confidence 345678999874 5799999999776543 3339999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccc
Q psy1156 465 SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIS 544 (671)
Q Consensus 465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s 544 (671)
.+|-.|+|+|.-......... ..+.++.+.+....+..++ ...+...++...++
T Consensus 825 daGlsVtLtIip~ee~~~~~~-----~~sa~~~s~~t~~~~~~q~--------------~glp~~~~s~~~~~------- 878 (984)
T KOG3209|consen 825 DAGLSVTLTIIPPEEAGPPTS-----MTSAEKQSPFTQNGPYEQQ--------------YGLPGPRPSVYEEH------- 878 (984)
T ss_pred hcCceEEEEEcChhccCCCCC-----CcchhhcCcccccCCHhHc--------------cCCCCCCccccccC-------
Confidence 999999999976443211100 0000111111110000000 00000000000000
Q ss_pred cCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCC
Q psy1156 545 TGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624 (671)
Q Consensus 545 ~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrL 624 (671)
. .++...- ..-.........+++|+|+|+. .+|||+|+||... .+++||-+++++|||.++|+|
T Consensus 879 --p-qpdt~~~--------~~~~~r~~qn~~~~~VelErG~--kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGrm 942 (984)
T KOG3209|consen 879 --P-QPDTFQG--------LSINDRMSQNGDLYTVELERGA--KGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGRM 942 (984)
T ss_pred --C-CCccccc--------eeccccccccCCeeEEEeeccc--cccceEeeccccc---ccceEEEEeccCCCccccCce
Confidence 0 0000000 0000111233467899999997 8999999999654 589999999999999999999
Q ss_pred CCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEe
Q psy1156 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664 (671)
Q Consensus 625 r~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~R 664 (671)
++||+|++|||++..+|+|..|+++||+-+ ..|.|++.|
T Consensus 943 ~VGDqi~eINGesTkgmtH~rAIelIk~gg-~~vll~Lr~ 981 (984)
T KOG3209|consen 943 RVGDQITEINGESTKGMTHDRAIELIKQGG-RRVLLLLRR 981 (984)
T ss_pred eecceEEEecCcccCCCcHHHHHHHHHhCC-eEEEEEecc
Confidence 999999999999999999999999999854 344444443
No 2
>KOG3209|consensus
Probab=99.87 E-value=3.6e-21 Score=213.96 Aligned_cols=187 Identities=26% Similarity=0.405 Sum_probs=152.6
Q ss_pred CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--
Q psy1156 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-- 464 (671)
Q Consensus 387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-- 464 (671)
....|-|.+.. -+|||.|-||.+.. ..|+|..|++.|+|+..|+|+.||+|+.|+|++|.+.+|.+++.+|.
T Consensus 649 k~ldV~L~rke--sGFGFRiLGG~ep~----qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~A 722 (984)
T KOG3209|consen 649 KELDVFLRRKE--SGFGFRILGGDEPG----QPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAA 722 (984)
T ss_pred cceeEEEEeec--cccceEEecCCCCC----CeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHH
Confidence 55778888754 79999999998765 78999999999999999999999999999999999999999999998
Q ss_pred cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccc
Q psy1156 465 SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIS 544 (671)
Q Consensus 465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s 544 (671)
...+.|.|+|.|....... . .+|.
T Consensus 723 ArnghV~LtVRRkv~~~~~-----------------~-----------rsp~---------------------------- 746 (984)
T KOG3209|consen 723 ARNGHVNLTVRRKVRTGPA-----------------R-----------RSPR---------------------------- 746 (984)
T ss_pred HhcCceEEEEeeeeeeccc-----------------c-----------CCcc----------------------------
Confidence 3468899999885431100 0 0000
Q ss_pred cCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCC
Q psy1156 545 TGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624 (671)
Q Consensus 545 ~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrL 624 (671)
.+ ........|.|.+.. .++|||.|......+. --|..|.+||||+++|+|
T Consensus 747 -----~s-------------------~~~~~~yDV~lhR~E-NeGFGFVi~sS~~kp~----sgiGrIieGSPAdRCgkL 797 (984)
T KOG3209|consen 747 -----NS-------------------AAPSGPYDVVLHRKE-NEGFGFVIMSSQNKPE----SGIGRIIEGSPADRCGKL 797 (984)
T ss_pred -----cc-------------------cCCCCCeeeEEeccc-CCceeEEEEecccCCC----CCccccccCChhHhhccc
Confidence 00 000113578898886 6999999988877652 238999999999999999
Q ss_pred CCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665 (671)
Q Consensus 625 r~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr 665 (671)
++||+|++|||+++.+++|.++|.+||.++ -+|+|+|.-.
T Consensus 798 kVGDrilAVNG~sI~~lsHadiv~LIKdaG-lsVtLtIip~ 837 (984)
T KOG3209|consen 798 KVGDRILAVNGQSILNLSHADIVSLIKDAG-LSVTLTIIPP 837 (984)
T ss_pred cccceEEEecCeeeeccCchhHHHHHHhcC-ceEEEEEcCh
Confidence 999999999999999999999999999996 8999998654
No 3
>KOG3580|consensus
Probab=99.80 E-value=6.6e-19 Score=192.95 Aligned_cols=260 Identities=22% Similarity=0.306 Sum_probs=163.4
Q ss_pred CeEEEEEEeCCCCCcccEEEeeecCCCCCC--cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGN--IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464 (671)
Q Consensus 387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~--~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~ 464 (671)
+.++|+|.| ++..+|||.|.||.+++.+. ..-|+|+.|.|||||+ |+|+.||.|+.|||++++++.|..|++.|+
T Consensus 8 EQhTvTL~k-dp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLr 84 (1027)
T KOG3580|consen 8 EQHTVTLQK-DPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLR 84 (1027)
T ss_pred hhheeeeec-CCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHH
Confidence 457899998 46899999999999987442 2569999999999996 999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeCCccccccccccccc-cccccc-ccccccccccCCcccCCcccc--hhhhhhhccccccccc---hhh
Q psy1156 465 SGPLNMDLLISRTSLKKSNAENEYNES-HSREKK-SKETRFSLDKQNDFESSNEQD--KNNQKRLFQKNCHSIN---NKL 537 (671)
Q Consensus 465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~-~s~~~~-~~~~~ss~d~e~~~~ssp~~~--k~s~~~~~q~~~~s~~---~~~ 537 (671)
.++....++|.|..+....+.. ..++ .+.... ..+..+.... ..+..... -+++-... ..+...+ .+.
T Consensus 85 ksgK~A~ItvkRprkvqvpa~~-asPp~s~~~r~~~ded~~d~Rs---~rsg~~~r~~~~s~~grs-rsw~~~~er~rP~ 159 (1027)
T KOG3580|consen 85 KSGKVAAITVKRPRKVQVPALQ-ASPPLSQDDRAFEDEDEFDGRS---FRSGYSERSRLNSHGGRS-RSWEDSPERGRPH 159 (1027)
T ss_pred hhccceeEEecccceeeccccC-CCCCCCCccccccchhccCccc---ccccccccccccccCCcc-cccccccccCCcc
Confidence 9999999999987776544211 1111 000000 0000000000 00000000 00000000 0000000 000
Q ss_pred hhhcccccCCCCCchhh----hhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeC
Q psy1156 538 LRKAIISTGSISGDEEE----TILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSIL 613 (671)
Q Consensus 538 ~r~~v~s~~s~s~d~~~----s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~ 613 (671)
.+.. ......+.+.-. ...........|. |+ .......|.|.|....+.+|+.|.. -|||+.|.
T Consensus 160 ~R~r-srer~ls~~~~gprs~~r~~~ss~~~~p~-p~-~~~~p~kv~LvKsR~nEEyGlrLgS---------qIFvKeit 227 (1027)
T KOG3580|consen 160 ERAR-SRERDLSRDRRGPRSRSREHPSSRSPSPE-PR-GRPGPIKVLLVKSRANEEYGLRLGS---------QIFVKEIT 227 (1027)
T ss_pred cccc-ccccccccCCCCCcccccccccCCCCCCC-cc-CCCCcceEEEEeeccchhhcccccc---------hhhhhhhc
Confidence 0000 000000000000 0000011111211 11 1123356778877777899998842 48999999
Q ss_pred CCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156 614 DNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667 (671)
Q Consensus 614 pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~ 667 (671)
..|.|+++|.|+.||+||+|||+...+|++.++..+|.++ .+.+.|+|+|+..
T Consensus 228 ~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS-~GKL~lvVlRD~~ 280 (1027)
T KOG3580|consen 228 RTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRDSQ 280 (1027)
T ss_pred ccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhc-cCceEEEEEecCC
Confidence 9999999999999999999999999999999999999998 4899999999864
No 4
>KOG3580|consensus
Probab=99.78 E-value=2.9e-18 Score=188.02 Aligned_cols=261 Identities=25% Similarity=0.400 Sum_probs=160.2
Q ss_pred CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156 386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465 (671)
Q Consensus 386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~ 465 (671)
.+...|.|+|....+.||+.+. .-|||..|...|.|++.|.|+.||+||.|||...++++..++..+|..
T Consensus 197 ~~p~kv~LvKsR~nEEyGlrLg----------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEk 266 (1027)
T KOG3580|consen 197 PGPIKVLLVKSRANEEYGLRLG----------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEK 266 (1027)
T ss_pred CCcceEEEEeeccchhhccccc----------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHh
Confidence 3556788999777899999887 569999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEeCCcccccccccccccccc----cccccc--cccccccCCcccCCcccchhhhhhhccccc-cccchhhh
Q psy1156 466 GPLNMDLLISRTSLKKSNAENEYNESHSR----EKKSKE--TRFSLDKQNDFESSNEQDKNNQKRLFQKNC-HSINNKLL 538 (671)
Q Consensus 466 ~g~~V~L~V~R~~~~~~~a~~~~~~~~s~----~~~~~~--~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~-~s~~~~~~ 538 (671)
+.+.+.|+|+|+........+......+. +....+ +.+++.....-..++..+..+...+.++.. ...+....
T Consensus 267 S~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s 346 (1027)
T KOG3580|consen 267 SRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLS 346 (1027)
T ss_pred ccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcc
Confidence 99999999999876544322211110000 000000 001111000000000000000000000000 00000000
Q ss_pred hhccccc-CCCCCchhhhhhc----cCC---ccCCCCC---CC-------------CcccceeeEEEeeCCCCCcccEEE
Q psy1156 539 RKAIIST-GSISGDEEETILT----STN---FCTLPRR---PR-------------SAICTFHTIVFEKGPGKKGLGFTI 594 (671)
Q Consensus 539 r~~v~s~-~s~s~d~~~s~~~----s~~---~~~lP~~---p~-------------s~~~~~~~V~L~K~~g~~~LGfsL 594 (671)
+....++ .-...+....... ... ...+|.. ++ ......+.|.+.|+ ..+|+.|
T Consensus 347 ~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KG---dSvGLRL 423 (1027)
T KOG3580|consen 347 RMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKG---DSVGLRL 423 (1027)
T ss_pred cCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecC---CeeeeEe
Confidence 0000000 0000000000000 000 0111111 00 11234567888887 5899999
Q ss_pred ecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC-cEEEEEEeC
Q psy1156 595 VGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG-SISLHICRR 665 (671)
Q Consensus 595 ~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~-~VtL~V~Rr 665 (671)
+||++ .||||..|.+|+||++.| |+.||+||.||.++++++..++||..|-..+.+ .|+|+-+++
T Consensus 424 AGGND-----VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k 489 (1027)
T KOG3580|consen 424 AGGND-----VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSK 489 (1027)
T ss_pred ccCCc-----eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence 99998 599999999999999999 999999999999999999999999999988754 477766554
No 5
>PRK10139 serine endoprotease; Provisional
Probab=99.57 E-value=3.4e-14 Score=158.73 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=131.8
Q ss_pred ccccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEcc
Q psy1156 369 SMMEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446 (671)
Q Consensus 369 s~~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaV 446 (671)
++++.+..++.+.+...++|..|.+..-. ....||+.. . .|++|..|.++|||+++| |++||+|++|
T Consensus 249 ~~~~~v~~~l~~~g~v~r~~LGv~~~~l~~~~~~~lgl~~------~----~Gv~V~~V~~~SpA~~AG-L~~GDvIl~I 317 (455)
T PRK10139 249 NMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDV------Q----RGAFVSEVLPNSGSAKAG-VKAGDIITSL 317 (455)
T ss_pred HHHHHHHHHHhhcCcccccceeEEEEECCHHHHHhcCCCC------C----CceEEEEECCCChHHHCC-CCCCCEEEEE
Confidence 45566666777777888888888876522 123455421 1 689999999999999999 9999999999
Q ss_pred CCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhh
Q psy1156 447 NGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKR 524 (671)
Q Consensus 447 NG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~ 524 (671)
||+.+..+ .++...+. ..+..+.|+|.|.++....... . ... +...
T Consensus 318 nG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~-------------~-----~~~------~~~~------ 365 (455)
T PRK10139 318 NGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVT-------------L-----DTS------TSSS------ 365 (455)
T ss_pred CCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE-------------E-----CCC------CCcc------
Confidence 99999865 55555554 4577899999997753222000 0 000 0000
Q ss_pred hccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCC
Q psy1156 525 LFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA 604 (671)
Q Consensus 525 ~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~ 604 (671)
. .. . ...+ ...|+.+.... .....
T Consensus 366 ------------------~-----~~-----~------~~~~---------------------~~~g~~l~~~~-~~~~~ 389 (455)
T PRK10139 366 ------------------A-----SA-----E------MITP---------------------ALQGATLSDGQ-LKDGT 389 (455)
T ss_pred ------------------c-----cc-----c------cccc---------------------cccccEecccc-cccCC
Confidence 0 00 0 0000 00122221110 01112
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|+|+++| |++||+|++|||+++. +++++..+|++.+ +.+.|+|.|+..
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~-~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKP-AIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCC-CeEEEEEEECCE
Confidence 489999999999999999 9999999999999998 7899999998865 789999998764
No 6
>KOG3605|consensus
Probab=99.57 E-value=6.2e-15 Score=163.87 Aligned_cols=165 Identities=30% Similarity=0.489 Sum_probs=134.5
Q ss_pred CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464 (671)
Q Consensus 385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~ 464 (671)
....+.|.|.|.+ ++.||+.|+... .+.-+.-|+|+.++++|||+++|.|-.||+|++|||.++.+++..-...+++
T Consensus 643 kE~qKEVvv~K~k-GEiLGVViVESG--WGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik 719 (829)
T KOG3605|consen 643 KENQKEVVLEKHK-GEILGVVIVESG--WGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 719 (829)
T ss_pred hcccceeeeeccc-CceeeEEEEecC--ccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHh
Confidence 4667889999964 799999988521 1112466899999999999999999999999999999999999999999998
Q ss_pred cC--CCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcc
Q psy1156 465 SG--PLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAI 542 (671)
Q Consensus 465 ~~--g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v 542 (671)
.. ...|.|+|.+-.
T Consensus 720 ~~KnQT~VkltiV~cp---------------------------------------------------------------- 735 (829)
T KOG3605|consen 720 GLKNQTAVKLNIVSCP---------------------------------------------------------------- 735 (829)
T ss_pred cccccceEEEEEecCC----------------------------------------------------------------
Confidence 43 456777774311
Q ss_pred cccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhC
Q psy1156 543 ISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDG 622 (671)
Q Consensus 543 ~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraG 622 (671)
...+|.|.|....-.|||+|..| +|-++..||.|++-|
T Consensus 736 --------------------------------PV~~V~I~RPd~kyQLGFSVQNG----------iICSLlRGGIAERGG 773 (829)
T KOG3605|consen 736 --------------------------------PVTTVLIRRPDLRYQLGFSVQNG----------IICSLLRGGIAERGG 773 (829)
T ss_pred --------------------------------CceEEEeecccchhhccceeeCc----------EeehhhcccchhccC
Confidence 11256777776667899999865 788999999999988
Q ss_pred CCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEE
Q psy1156 623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISL 660 (671)
Q Consensus 623 rLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL 660 (671)
+|+|-||++|||++|....|+.+|++|..+- +.|.+
T Consensus 774 -VRVGHRIIEINgQSVVA~pHekIV~lLs~aV-GEIhM 809 (829)
T KOG3605|consen 774 -VRVGHRIIEINGQSVVATPHEKIVQLLSNAV-GEIHM 809 (829)
T ss_pred -ceeeeeEEEECCceEEeccHHHHHHHHHHhh-hhhhh
Confidence 9999999999999999999999999998863 55544
No 7
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.55 E-value=4.3e-14 Score=156.60 Aligned_cols=193 Identities=24% Similarity=0.309 Sum_probs=125.2
Q ss_pred ccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCC
Q psy1156 371 MEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448 (671)
Q Consensus 371 ~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG 448 (671)
.+.+..++...+...++|..|.+..-. ....||+.. . .|++|..|.++|||+++| |++||+|++|||
T Consensus 218 ~~~~~~~l~~~g~~~~~~lGi~~~~~~~~~~~~lgl~~------~----~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng 286 (428)
T TIGR02037 218 AKNVVDQLIEGGKVQRGWLGVTIQEVTSDLAKSLGLEK------Q----RGALVAQVLPGSPAEKAG-LKAGDVILSVNG 286 (428)
T ss_pred HHHHHHHHHhcCcCcCCcCceEeecCCHHHHHHcCCCC------C----CceEEEEccCCCChHHcC-CCCCCEEEEECC
Confidence 344444444555556666666665421 123345321 1 689999999999999999 999999999999
Q ss_pred eeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhc
Q psy1156 449 QRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLF 526 (671)
Q Consensus 449 ~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~ 526 (671)
..+..+ .+....+. ..+..+.|+|.|++........ .... +...
T Consensus 287 ~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~-------------l~~~-----------~~~~-------- 332 (428)
T TIGR02037 287 KPISSF--ADLRRAIGTLKPGKKVTLGILRKGKEKTITVT-------------LGAS-----------PEEQ-------- 332 (428)
T ss_pred EEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE-------------ECcC-----------CCcc--------
Confidence 999754 34444443 4578899999997753222000 0000 0000
Q ss_pred cccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCC-------C
Q psy1156 527 QKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGK-------D 599 (671)
Q Consensus 527 q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~-------d 599 (671)
+. . . ...+|+.+..-. .
T Consensus 333 ---------------------------------------~~--~-------------~--~~~lGi~~~~l~~~~~~~~~ 356 (428)
T TIGR02037 333 ---------------------------------------AS--S-------------S--NPFLGLTVANLSPEIRKELR 356 (428)
T ss_pred ---------------------------------------cc--c-------------c--ccccceEEecCCHHHHHHcC
Confidence 00 0 0 012333332110 0
Q ss_pred CCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156 600 SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK 667 (671)
Q Consensus 600 s~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~ 667 (671)
.+....|++|..|.++|+|+++| |++||+|++|||++|. +..++.++|++. ..+.+.|+|.|+..
T Consensus 357 l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 357 LKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 01112489999999999999999 9999999999999998 678889888865 24679999999764
No 8
>PRK10942 serine endoprotease; Provisional
Probab=99.55 E-value=6.3e-14 Score=157.29 Aligned_cols=193 Identities=17% Similarity=0.216 Sum_probs=129.0
Q ss_pred ccccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEcc
Q psy1156 369 SMMEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446 (671)
Q Consensus 369 s~~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaV 446 (671)
.+.+.+..++...+...++|..|.++.-+ ....||+.- . .|++|..|.+++||+++| |++||+|++|
T Consensus 270 ~~~~~v~~~l~~~g~v~rg~lGv~~~~l~~~~a~~~~l~~------~----~GvlV~~V~~~SpA~~AG-L~~GDvIl~I 338 (473)
T PRK10942 270 NMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDA------Q----RGAFVSQVLPNSSAAKAG-IKAGDVITSL 338 (473)
T ss_pred HHHHHHHHHHHhccccccceeeeEeeecCHHHHHhcCCCC------C----CceEEEEECCCChHHHcC-CCCCCEEEEE
Confidence 44555556666677777888888876422 123344321 1 689999999999999999 9999999999
Q ss_pred CCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhh
Q psy1156 447 NGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKR 524 (671)
Q Consensus 447 NG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~ 524 (671)
||+.|..+ .+....+. ..+..+.|+|.|+++....... ... . +...
T Consensus 339 nG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~-------------l~~--~---------~~~~------ 386 (473)
T PRK10942 339 NGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPVNVNVE-------------LQQ--S---------SQNQ------ 386 (473)
T ss_pred CCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEEEEEEE-------------eCc--C---------cccc------
Confidence 99999865 44444443 3577899999998753222000 000 0 0000
Q ss_pred hccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCC
Q psy1156 525 LFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA 604 (671)
Q Consensus 525 ~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~ 604 (671)
.. .. ...+|+....-.... ..
T Consensus 387 ----------------------------------------~~----------------~~--~~~lGl~g~~l~~~~-~~ 407 (473)
T PRK10942 387 ----------------------------------------VD----------------SS--NIFNGIEGAELSNKG-GD 407 (473)
T ss_pred ----------------------------------------cc----------------cc--cccccceeeeccccc-CC
Confidence 00 00 011222211100000 11
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~ 667 (671)
.|++|.+|.++|+|+++| |++||+|++|||++|. +..++.+++++.+ ..+.|+|.|+..
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~-~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKP-SVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCC-CeEEEEEEECCE
Confidence 389999999999999999 9999999999999999 6899999998865 789999988753
No 9
>KOG3571|consensus
Probab=99.54 E-value=4.7e-14 Score=153.53 Aligned_cols=205 Identities=22% Similarity=0.188 Sum_probs=136.2
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCCccccccccCCCCCCccCcCC-----------CCCCccccCccchhhhcccCCCCC
Q psy1156 254 TCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFR-----------NSPSKSENGQLPNFQIQSYGYDSP 322 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~e~l~~~~~~~~~~~~p 322 (671)
+|.... ..+||.+|++|++|+|+|+++++... +++.+|... |.+++++.|+-....+...+ .-+
T Consensus 100 ~g~~~~-~~l~p~ers~G~~~~r~p~~~~~~~~---s~~~~~~~~~t~s~~s~~~~r~~~r~~~e~~~~~g~~~g~-r~~ 174 (626)
T KOG3571|consen 100 QGRDRR-LDLPPSERSSGIGDSRPPQFTPNDKR---SRDSQDFDLTTYSDVSLARSRPVRRQRYERHLHNGEHLGE-RRR 174 (626)
T ss_pred cccccc-ccCCccccCCCcccccCcccCCCccc---cccccccccccHhhhhhcccccccchhhhhhhhcCccccc-ccc
Confidence 344443 46778999999999999999999865 555666544 45566665554322211111 114
Q ss_pred ccccccccCchhhhhcccCCcccc--ccCC-------------------CCCCCCCCCcccCCccccccccchhccccCC
Q psy1156 323 ILSSRSQNSSMISEKYNLDVPNIF--NRNS-------------------GSQSLLEIPAYQNSSDYHSMMEISELSSENS 381 (671)
Q Consensus 323 ~~s~~~~~~s~i~e~~~~~~~~~~--~r~~-------------------~~~~~~PiP~~~~s~~~~s~~~~v~~~~~~~ 381 (671)
+.++.+.++++.++.--.+.++.. .+.. .-.+.+-+|.... -...+-.
T Consensus 175 ~~~Sss~~sse~d~~s~~d~Ded~~~sr~s~~Td~ss~srl~~r~K~rrrkkR~p~~~sr~S-----------SfSSiTd 243 (626)
T KOG3571|consen 175 YESSSSELSSELDSTSFRDSDEDDLYSRLSSSTDQSSVSRLHRRKKRRRRKKRRPRVPSRAS-----------SFSSITD 243 (626)
T ss_pred cccccccccccccceeeccCccccccccccccccchhHHHHHHHHHHhhhhhcCCCcccccc-----------ccccccc
Confidence 556667777777543333322222 3321 1222333332100 0000011
Q ss_pred CCCCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156 382 EDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461 (671)
Q Consensus 382 ~~~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~ 461 (671)
.....++++|.|.... -.-|||+|+|... ..|+ .||||..|++||+.+..|+|.+||+||+||.+++++++..+||.
T Consensus 244 SsmslnIITV~LnMe~-vnfLGiSivgqsn-~rgD-ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVr 320 (626)
T KOG3571|consen 244 SSMSLNIITVTLNMET-VNFLGISIVGQSN-ARGD-GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVR 320 (626)
T ss_pred cccceeEEEEEecccc-cccceeEeecccC-cCCC-CceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHH
Confidence 1224678999998865 4679999998654 4566 89999999999999999999999999999999999999999999
Q ss_pred HHh---cCCCeEEEEEEeC
Q psy1156 462 IIS---SGPLNMDLLISRT 477 (671)
Q Consensus 462 ~L~---~~g~~V~L~V~R~ 477 (671)
+|+ +..+.+.|+|..-
T Consensus 321 vLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 321 VLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred HHHHHhccCCCeEEEEeec
Confidence 999 4567799999763
No 10
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.44 E-value=7.9e-13 Score=113.07 Aligned_cols=81 Identities=37% Similarity=0.679 Sum_probs=72.1
Q ss_pred eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS 657 (671)
Q Consensus 578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~ 657 (671)
+|+|.|. ...+|||.+.++.+.. ..|+||.+|.++|+|+++| |++||+|++|||+++.+++|.+++.+|+.++ +.
T Consensus 1 ~v~l~k~-~~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~ 75 (81)
T PF00595_consen 1 QVTLEKS-GNGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSAS-NP 75 (81)
T ss_dssp EEEEEES-TTSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHST-SE
T ss_pred CEEEEeC-CCCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCC-Cc
Confidence 3678886 3599999999987642 3489999999999999999 9999999999999999999999999999986 68
Q ss_pred EEEEEE
Q psy1156 658 ISLHIC 663 (671)
Q Consensus 658 VtL~V~ 663 (671)
|+|+|+
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999885
No 11
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.43 E-value=1.7e-12 Score=145.05 Aligned_cols=153 Identities=18% Similarity=0.254 Sum_probs=106.6
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCccccccccccccccccccccc
Q psy1156 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSK 499 (671)
Q Consensus 420 I~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~ 499 (671)
.+|..|.++|||+++| |++||+|++|||+.+.++..-...-.....+..+.++|.|+++.......
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~------------- 193 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKT------------- 193 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEE-------------
Confidence 5789999999999999 99999999999999987754433333334567899999998764332000
Q ss_pred ccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeE
Q psy1156 500 ETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTI 579 (671)
Q Consensus 500 ~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V 579 (671)
+...... . . +...
T Consensus 194 l~~~~~~------------------------------------------~-~--------------~~~~---------- 206 (449)
T PRK10779 194 LDLRHWA------------------------------------------F-E--------------PDKQ---------- 206 (449)
T ss_pred ecccccc------------------------------------------c-C--------------cccc----------
Confidence 0000000 0 0 0000
Q ss_pred EEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEE
Q psy1156 580 VFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSIS 659 (671)
Q Consensus 580 ~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~Vt 659 (671)
.....+|+.... . ..+++|..|.++|||+++| |++||+|++|||++|. +.+++.+.++..+.+.+.
T Consensus 207 -----~~~~~lGl~~~~--~----~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~ 272 (449)
T PRK10779 207 -----DPVSSLGIRPRG--P----QIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLA 272 (449)
T ss_pred -----chhhcccccccC--C----CcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEE
Confidence 000235553221 1 1257999999999999999 9999999999999998 788888888876556799
Q ss_pred EEEEeCCC
Q psy1156 660 LHICRRLK 667 (671)
Q Consensus 660 L~V~Rr~~ 667 (671)
|+|.|+..
T Consensus 273 l~v~R~g~ 280 (449)
T PRK10779 273 LEIERQGS 280 (449)
T ss_pred EEEEECCE
Confidence 99988763
No 12
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.34 E-value=8.9e-12 Score=106.56 Aligned_cols=81 Identities=27% Similarity=0.507 Sum_probs=72.8
Q ss_pred EEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCe
Q psy1156 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN 469 (671)
Q Consensus 390 ~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~ 469 (671)
.|+|.|. ..++|||.+.++.+.. . .++||..|.++|||+++| |++||+|++|||+++.++++.+++.+++.++..
T Consensus 1 ~v~l~k~-~~~~lG~~l~~~~~~~--~-~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 1 QVTLEKS-GNGPLGFTLRGGSDND--E-KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp EEEEEES-TTSBSSEEEEEESTSS--S-EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred CEEEEeC-CCCCcCEEEEecCCCC--c-CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence 4788886 6799999999987642 1 489999999999999999 999999999999999999999999999988889
Q ss_pred EEEEEE
Q psy1156 470 MDLLIS 475 (671)
Q Consensus 470 V~L~V~ 475 (671)
|+|+|.
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999884
No 13
>KOG3550|consensus
Probab=99.28 E-value=8.5e-12 Score=118.06 Aligned_cols=83 Identities=34% Similarity=0.589 Sum_probs=75.3
Q ss_pred eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN 655 (671)
Q Consensus 576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~ 655 (671)
.+.|.|.|.. ++|||.|-||++.. .+|||+.|.|||.|++.|.|+.||++|.|||++|.+-.|+.||++|+.+ .
T Consensus 91 prvvelpktd--eglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa-~ 164 (207)
T KOG3550|consen 91 PRVVELPKTD--EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA-V 164 (207)
T ss_pred CceeecCccc--cccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh-c
Confidence 3567787775 89999999998865 7899999999999999999999999999999999999999999999998 4
Q ss_pred CcEEEEEEe
Q psy1156 656 GSISLHICR 664 (671)
Q Consensus 656 ~~VtL~V~R 664 (671)
+.|.|+|.-
T Consensus 165 gsvklvvry 173 (207)
T KOG3550|consen 165 GSVKLVVRY 173 (207)
T ss_pred CcEEEEEec
Confidence 899999854
No 14
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.27 E-value=4.7e-11 Score=132.44 Aligned_cols=135 Identities=24% Similarity=0.297 Sum_probs=100.7
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCccccccccccccccccccc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKK 497 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~ 497 (671)
.|++|..|.++|||+++| |++||+|++|||..+.++. +....+....+.+.+.+.|.+.....
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~--dl~~~ia~~~~~v~~~I~r~g~~~~l-------------- 190 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFK--DVRQQIADIAGEPMVEILAERENWTF-------------- 190 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhhcccceEEEEEecCceEe--------------
Confidence 578999999999999999 9999999999999998653 33333332227788888885431000
Q ss_pred ccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCccccee
Q psy1156 498 SKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFH 577 (671)
Q Consensus 498 ~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~ 577 (671)
T Consensus 191 -------------------------------------------------------------------------------- 190 (420)
T TIGR00054 191 -------------------------------------------------------------------------------- 190 (420)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS 657 (671)
Q Consensus 578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~ 657 (671)
.+ .+|+.. ... ..|++|.+|.++|||+++| |++||+|++|||++|. +.+++...++..+...
T Consensus 191 ~v---------~l~~~~--~~~----~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~ 252 (420)
T TIGR00054 191 EV---------MKELIP--RGP----KIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKS 252 (420)
T ss_pred cc---------ccccee--cCC----CcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCc
Confidence 00 011110 000 0257999999999999999 9999999999999998 7899999998765567
Q ss_pred EEEEEEeCCC
Q psy1156 658 ISLHICRRLK 667 (671)
Q Consensus 658 VtL~V~Rr~~ 667 (671)
+.|+|.|+..
T Consensus 253 v~l~v~R~g~ 262 (420)
T TIGR00054 253 MDIKVERNGE 262 (420)
T ss_pred eEEEEEECCE
Confidence 9999988753
No 15
>KOG3550|consensus
Probab=99.13 E-value=1.1e-10 Score=110.48 Aligned_cols=89 Identities=25% Similarity=0.455 Sum_probs=80.2
Q ss_pred CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464 (671)
Q Consensus 385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~ 464 (671)
...++.|.|-|.+ ++|||.|.||.+.. .+|||++|.|||.|++-|.|+.||++++|||.+|++-.|+.++.+|+
T Consensus 88 hahprvvelpktd--eglgfnvmggkeqn----spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellk 161 (207)
T KOG3550|consen 88 HAHPRVVELPKTD--EGLGFNVMGGKEQN----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLK 161 (207)
T ss_pred CCCCceeecCccc--cccceeeccCcccC----CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHH
Confidence 3456889998754 99999999999876 89999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeCCc
Q psy1156 465 SGPLNMDLLISRTSL 479 (671)
Q Consensus 465 ~~g~~V~L~V~R~~~ 479 (671)
.+.+.|.|+|..-.+
T Consensus 162 aa~gsvklvvrytpk 176 (207)
T KOG3550|consen 162 AAVGSVKLVVRYTPK 176 (207)
T ss_pred HhcCcEEEEEecChH
Confidence 999999999965433
No 16
>KOG3549|consensus
Probab=99.02 E-value=5.4e-10 Score=117.70 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=81.6
Q ss_pred CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463 (671)
Q Consensus 384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L 463 (671)
.+.+-++|+|.+. +-++||++|.||.++. .+|+|++|.+.-.|+..|.|.+||-|++|||+.|+.++|++++.+|
T Consensus 51 ~~s~eRtVtirRQ-~vGGlGLSIKGGaEHn----~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iL 125 (505)
T KOG3549|consen 51 MESKERTVTIRRQ-KVGGLGLSIKGGAEHN----LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNIL 125 (505)
T ss_pred ccCCceeEEEEee-ecCcceeeeccccccC----ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHH
Confidence 3567799999885 4799999999999876 8999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEEEe
Q psy1156 464 SSGPLNMDLLISR 476 (671)
Q Consensus 464 ~~~g~~V~L~V~R 476 (671)
+++|+.|+|+|..
T Consensus 126 RNAGdeVtlTV~~ 138 (505)
T KOG3549|consen 126 RNAGDEVTLTVKH 138 (505)
T ss_pred HhcCCEEEEEeHh
Confidence 9999999999954
No 17
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.00 E-value=4.7e-09 Score=88.91 Aligned_cols=80 Identities=41% Similarity=0.721 Sum_probs=67.8
Q ss_pred eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG 656 (671)
Q Consensus 577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~ 656 (671)
+.+.+.+.. ..+|||.+.+.... ..|++|..|.++++|+++| |++||+|++|||.++..+++.++..+|+... .
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~-~ 75 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSG-D 75 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCC-C
Confidence 356777763 47899999876543 2489999999999999988 9999999999999999999999999999874 5
Q ss_pred cEEEEE
Q psy1156 657 SISLHI 662 (671)
Q Consensus 657 ~VtL~V 662 (671)
.+.|+|
T Consensus 76 ~v~l~v 81 (82)
T cd00992 76 EVTLTV 81 (82)
T ss_pred eEEEEE
Confidence 777776
No 18
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.98 E-value=3.5e-09 Score=87.41 Aligned_cols=68 Identities=35% Similarity=0.590 Sum_probs=60.7
Q ss_pred cccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEE
Q psy1156 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662 (671)
Q Consensus 589 ~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V 662 (671)
+|||.+.+..+ .|++|..|.+++||+.+| |++||+|++|||.++.++++.++..+|+......|.|.|
T Consensus 2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 58999987654 379999999999999998 999999999999999999999999999987646788876
No 19
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.93 E-value=1.5e-08 Score=85.82 Aligned_cols=81 Identities=44% Similarity=0.747 Sum_probs=69.2
Q ss_pred eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS 657 (671)
Q Consensus 578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~ 657 (671)
.+.+.+.. ..|||.+....... .|++|..|.++++|+++| |++||+|++|||+.+.++++.+++.+++..+ ..
T Consensus 4 ~~~~~~~~--~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~-~~ 76 (85)
T smart00228 4 LVELEKGG--GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG-GK 76 (85)
T ss_pred EEEEEECC--CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-Ce
Confidence 56676665 78999998654321 489999999999999999 9999999999999999999999999998874 58
Q ss_pred EEEEEEeC
Q psy1156 658 ISLHICRR 665 (671)
Q Consensus 658 VtL~V~Rr 665 (671)
+.|.|.|+
T Consensus 77 ~~l~i~r~ 84 (85)
T smart00228 77 VTLTVLRG 84 (85)
T ss_pred EEEEEEeC
Confidence 99999875
No 20
>KOG3551|consensus
Probab=98.91 E-value=1.5e-09 Score=115.73 Aligned_cols=83 Identities=31% Similarity=0.410 Sum_probs=77.3
Q ss_pred EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468 (671)
Q Consensus 389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~ 468 (671)
+.|+++|.+ +++|||+|.||.++. .+|+|+.|.+|-+|++.+.|.+||.|++|||.++...+|++||+.|+..+.
T Consensus 86 R~V~V~K~d-~gGLGISIKGGreNk----MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk 160 (506)
T KOG3551|consen 86 RRVRVVKQD-AGGLGISIKGGRENK----MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK 160 (506)
T ss_pred ceeEEEEec-CCcceEEeecCcccC----CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence 788888865 799999999999876 899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEe
Q psy1156 469 NMDLLISR 476 (671)
Q Consensus 469 ~V~L~V~R 476 (671)
.|.|.|..
T Consensus 161 eV~levKy 168 (506)
T KOG3551|consen 161 EVLLEVKY 168 (506)
T ss_pred eeeeeeee
Confidence 98887753
No 21
>KOG3551|consensus
Probab=98.91 E-value=1.9e-09 Score=115.08 Aligned_cols=86 Identities=30% Similarity=0.429 Sum_probs=76.7
Q ss_pred ccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156 573 ICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT 652 (671)
Q Consensus 573 ~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~ 652 (671)
....+.|.+.|.. .++||++|.||.+.. ++|+|+.|.+|=+|++.+.|..||.||.|||.++.+.+|+|||+.||.
T Consensus 82 ~~~~R~V~V~K~d-~gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr 157 (506)
T KOG3551|consen 82 AEAERRVRVVKQD-AGGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR 157 (506)
T ss_pred hcccceeEEEEec-CCcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh
Confidence 3345788888886 489999999998865 899999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEE
Q psy1156 653 IKNGSISLHIC 663 (671)
Q Consensus 653 sg~~~VtL~V~ 663 (671)
++ ..|.|.|.
T Consensus 158 aG-keV~levK 167 (506)
T KOG3551|consen 158 AG-KEVLLEVK 167 (506)
T ss_pred hC-ceeeeeee
Confidence 96 67777663
No 22
>KOG3549|consensus
Probab=98.89 E-value=2.8e-09 Score=112.45 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=77.6
Q ss_pred ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654 (671)
Q Consensus 575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg 654 (671)
..++|+|.+.+ .++||++|.||.+.. .+|+|+.|..+-+|+..|.|-+||.||+|||+.|+..+|+|+|++|+++|
T Consensus 54 ~eRtVtirRQ~-vGGlGLSIKGGaEHn---~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG 129 (505)
T KOG3549|consen 54 KERTVTIRRQK-VGGLGLSIKGGAEHN---LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG 129 (505)
T ss_pred CceeEEEEeee-cCcceeeeccccccC---ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC
Confidence 55789999887 599999999998765 78999999999999999999999999999999999999999999999996
Q ss_pred CCcEEEEEE
Q psy1156 655 NGSISLHIC 663 (671)
Q Consensus 655 ~~~VtL~V~ 663 (671)
+.|+|+|.
T Consensus 130 -deVtlTV~ 137 (505)
T KOG3549|consen 130 -DEVTLTVK 137 (505)
T ss_pred -CEEEEEeH
Confidence 89999883
No 23
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.88 E-value=1.9e-08 Score=85.13 Aligned_cols=80 Identities=31% Similarity=0.538 Sum_probs=68.0
Q ss_pred EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468 (671)
Q Consensus 389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~ 468 (671)
+.+.+.+.. .++|||.+.++.... .|++|..|.+++||+++| |++||+|++|||.++..+++.++..+++....
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~ 75 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRGGKDSG----GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD 75 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeCcccCC----CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC
Confidence 467777753 689999998765321 689999999999999999 99999999999999999999999999997666
Q ss_pred eEEEEE
Q psy1156 469 NMDLLI 474 (671)
Q Consensus 469 ~V~L~V 474 (671)
.+.|+|
T Consensus 76 ~v~l~v 81 (82)
T cd00992 76 EVTLTV 81 (82)
T ss_pred eEEEEE
Confidence 777765
No 24
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.86 E-value=1.1e-08 Score=87.94 Aligned_cols=72 Identities=29% Similarity=0.507 Sum_probs=58.6
Q ss_pred cccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCCC
Q psy1156 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRLK 667 (671)
Q Consensus 589 ~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~~ 667 (671)
.||+.+....+. .|++|.+|.++|||+++| |++||+|++|||.+|. +..+....|.. .+..+|.|+|.|+.+
T Consensus 2 ~lGv~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSDT----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSCS----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccCC----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 478887765542 489999999999999999 9999999999999997 77888888854 345789999999764
No 25
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.85 E-value=3.7e-08 Score=83.40 Aligned_cols=82 Identities=32% Similarity=0.528 Sum_probs=69.7
Q ss_pred EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468 (671)
Q Consensus 389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~ 468 (671)
..+.+.+.. ..|||.+....... .|++|..|.+++||+++| |++||+|++|||+.+.++++.+...++...+.
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~~~~~----~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~ 75 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGGKDEG----GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG 75 (85)
T ss_pred EEEEEEECC--CcccEEEECCCCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 457777753 89999998654321 589999999999999999 99999999999999999999999988887667
Q ss_pred eEEEEEEeC
Q psy1156 469 NMDLLISRT 477 (671)
Q Consensus 469 ~V~L~V~R~ 477 (671)
.+.|++.|.
T Consensus 76 ~~~l~i~r~ 84 (85)
T smart00228 76 KVTLTVLRG 84 (85)
T ss_pred eEEEEEEeC
Confidence 889988775
No 26
>KOG3553|consensus
Probab=98.83 E-value=1.1e-09 Score=97.35 Aligned_cols=75 Identities=28% Similarity=0.415 Sum_probs=64.6
Q ss_pred cccEEEecCCCCCC-------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEE
Q psy1156 589 GLGFTIVGGKDSPR-------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH 661 (671)
Q Consensus 589 ~LGfsL~Gg~ds~~-------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~ 661 (671)
.+||.|-||-+... .+.||||++|.+||||+.+| |+.+|.||.|||.+++-++|.+|+..|++. ..+.++
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~--~vl~mL 112 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE--EVLRML 112 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh--HHHHHH
Confidence 58999999877543 25799999999999999999 999999999999999999999999999885 356666
Q ss_pred EEeCC
Q psy1156 662 ICRRL 666 (671)
Q Consensus 662 V~Rr~ 666 (671)
|.|..
T Consensus 113 VaR~~ 117 (124)
T KOG3553|consen 113 VARQS 117 (124)
T ss_pred HHhhc
Confidence 76643
No 27
>KOG1892|consensus
Probab=98.78 E-value=9.3e-09 Score=118.72 Aligned_cols=90 Identities=27% Similarity=0.564 Sum_probs=79.1
Q ss_pred cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156 574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI 653 (671)
Q Consensus 574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s 653 (671)
.++.+|+|.|. +++|++|+..++......||||++|.+||+|+.+|||..||++|.|||+++.+++.+.|..+|...
T Consensus 932 pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen 932 PEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred CceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence 35678889887 689999987766555568999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEEeCCC
Q psy1156 654 KNGSISLHICRRLK 667 (671)
Q Consensus 654 g~~~VtL~V~Rr~~ 667 (671)
+ ..|.|.|.....
T Consensus 1009 g-~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1009 G-NVVHLEVAKQGA 1021 (1629)
T ss_pred C-CeEEEehhhhhh
Confidence 5 789999976654
No 28
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.75 E-value=5.1e-08 Score=80.47 Aligned_cols=67 Identities=31% Similarity=0.532 Sum_probs=59.0
Q ss_pred cccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC-CeEEEEE
Q psy1156 401 ELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP-LNMDLLI 474 (671)
Q Consensus 401 ~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g-~~V~L~V 474 (671)
+|||.+..... .+++|..|.+++||+.+| |++||+|++|||.++.++++.++..+++... ..+.|+|
T Consensus 2 ~~G~~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE------GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999886542 489999999999999999 9999999999999999999999999999544 6788776
No 29
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.74 E-value=4.5e-08 Score=83.87 Aligned_cols=71 Identities=28% Similarity=0.483 Sum_probs=60.6
Q ss_pred CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665 (671)
Q Consensus 588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr 665 (671)
.+||+.+.... .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++......+.|.|.|.
T Consensus 2 ~~lG~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYDD------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEcC------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 46888886432 379999999999999998 999999999999999988889999988765446799999886
No 30
>KOG3571|consensus
Probab=98.71 E-value=3e-08 Score=109.00 Aligned_cols=88 Identities=30% Similarity=0.562 Sum_probs=75.4
Q ss_pred ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-
Q psy1156 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI- 653 (671)
Q Consensus 575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s- 653 (671)
.+.+|.|.-.. ..-||++|+|..+. .|+.||||.+|+++|+.|.+|||.+||.||.||.+++.+++-.+||..|+++
T Consensus 249 nIITV~LnMe~-vnfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 249 NIITVTLNMET-VNFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred eEEEEEecccc-cccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 55677776665 35699999986553 4677999999999999999999999999999999999999999999999986
Q ss_pred -CCCcEEEEEEe
Q psy1156 654 -KNGSISLHICR 664 (671)
Q Consensus 654 -g~~~VtL~V~R 664 (671)
..+.++|+|+.
T Consensus 327 ~~~gPi~ltvAk 338 (626)
T KOG3571|consen 327 SRPGPIKLTVAK 338 (626)
T ss_pred ccCCCeEEEEee
Confidence 34679999864
No 31
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.66 E-value=7.7e-08 Score=82.70 Aligned_cols=73 Identities=27% Similarity=0.493 Sum_probs=57.8
Q ss_pred cccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCC
Q psy1156 401 ELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTS 478 (671)
Q Consensus 401 ~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~ 478 (671)
.||+.+...... .|++|..|.++|||+++| |++||+|++|||..+.. ..+....+. ..+..+.|+|.|.+
T Consensus 2 ~lGv~~~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 2 GLGVTVQNLSDT-----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp E-SEEEEECSCS-----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred EECeEEEEccCC-----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence 578777764431 689999999999999999 99999999999999954 455656663 57899999999987
Q ss_pred ccc
Q psy1156 479 LKK 481 (671)
Q Consensus 479 ~~~ 481 (671)
+..
T Consensus 74 ~~~ 76 (82)
T PF13180_consen 74 EEL 76 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 32
>KOG1892|consensus
Probab=98.64 E-value=6.5e-08 Score=111.93 Aligned_cols=91 Identities=24% Similarity=0.450 Sum_probs=79.2
Q ss_pred CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464 (671)
Q Consensus 385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~ 464 (671)
+.++.+|+|.|. +++|++|+...+.+.. ..||||.+|++||+|+..|+|..||++|.|||+++.|.+.+.|..+|.
T Consensus 931 ~pei~~vtL~Kn---nGmGLSIVAAkGaGq~-klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen 931 EPEIITVTLKKN---NGMGLSIVAAKGAGQR-KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred CCceEEEEEecc---CCceEEEEeeccCCcc-ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence 467899999874 6889988865543322 389999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeCCc
Q psy1156 465 SGPLNMDLLISRTSL 479 (671)
Q Consensus 465 ~~g~~V~L~V~R~~~ 479 (671)
..+..|+|.|...+.
T Consensus 1007 rtg~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1007 RTGNVVHLEVAKQGA 1021 (1629)
T ss_pred ccCCeEEEehhhhhh
Confidence 999999999976544
No 33
>KOG3553|consensus
Probab=98.57 E-value=1.8e-08 Score=89.80 Aligned_cols=76 Identities=29% Similarity=0.342 Sum_probs=64.5
Q ss_pred cccEEEeeecCCC-----CCC-cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEE
Q psy1156 401 ELGIYIAKIKNSS-----EGN-IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474 (671)
Q Consensus 401 ~LGfsI~gg~~~~-----~g~-~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V 474 (671)
-+||.|.||.+.. .+. +.||||.+|..||||+.+| |+.+|.|++|||-++.-++|++|+..+++ ...+.+.|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLV 113 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLV 113 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHH
Confidence 4699999987754 222 5899999999999999999 99999999999999999999999999985 45667777
Q ss_pred EeCC
Q psy1156 475 SRTS 478 (671)
Q Consensus 475 ~R~~ 478 (671)
.|..
T Consensus 114 aR~~ 117 (124)
T KOG3553|consen 114 ARQS 117 (124)
T ss_pred Hhhc
Confidence 6644
No 34
>KOG3606|consensus
Probab=98.52 E-value=1.5e-07 Score=96.83 Aligned_cols=92 Identities=27% Similarity=0.504 Sum_probs=77.7
Q ss_pred CCCeEEEEEEeCCCCCcccEEEeeecC-----CCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHH
Q psy1156 385 QEGQTMVRVNRRDFNEELGIYIAKIKN-----SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459 (671)
Q Consensus 385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~-----~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~a 459 (671)
.+.-+.|+|.|-....+|||.|+.|.. ++...+.||||++++|||.|+..|+|-+.|+|++|||+.|.+.+.+++
T Consensus 156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 455677999997777999999997653 122346899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEEEe
Q psy1156 460 KSIISSGPLNMDLLISR 476 (671)
Q Consensus 460 v~~L~~~g~~V~L~V~R 476 (671)
-.||-.-...+.++|..
T Consensus 236 TDMMvANshNLIiTVkP 252 (358)
T KOG3606|consen 236 TDMMVANSHNLIITVKP 252 (358)
T ss_pred HHHHhhcccceEEEecc
Confidence 99998666777777743
No 35
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.50 E-value=6.4e-07 Score=76.66 Aligned_cols=70 Identities=23% Similarity=0.534 Sum_probs=60.1
Q ss_pred CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCeEEEEEEeC
Q psy1156 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRT 477 (671)
Q Consensus 400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~V~L~V~R~ 477 (671)
.+||+.+.... .+++|..|.+++||+++| |++||+|++|||..+.++++.++..++.. .+..+.|+|.|.
T Consensus 2 ~~lG~~~~~~~-------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYDD-------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEcC-------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 46888876422 679999999999999999 99999999999999999888888888864 467889999886
No 36
>KOG3552|consensus
Probab=98.49 E-value=1.7e-07 Score=108.69 Aligned_cols=78 Identities=27% Similarity=0.594 Sum_probs=69.0
Q ss_pred ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654 (671)
Q Consensus 575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg 654 (671)
..+.|.+.+. ..|||.++.| .+|+|..|.+|||+. |.|.+||+||+|||.+|.+++++.|+++++++.
T Consensus 55 ~pr~vq~~r~---~~lGFgfvag-------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace 122 (1298)
T KOG3552|consen 55 EPRQVQLQRN---ASLGFGFVAG-------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE 122 (1298)
T ss_pred cchhhhhhcc---ccccceeecC-------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence 4567888877 4678877766 269999999999998 889999999999999999999999999999994
Q ss_pred CCcEEEEEEeC
Q psy1156 655 NGSISLHICRR 665 (671)
Q Consensus 655 ~~~VtL~V~Rr 665 (671)
..|.|+|++.
T Consensus 123 -~sv~ltV~qP 132 (1298)
T KOG3552|consen 123 -SSVNLTVCQP 132 (1298)
T ss_pred -hhcceEEecc
Confidence 8999999996
No 37
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.47 E-value=9.8e-07 Score=74.37 Aligned_cols=59 Identities=29% Similarity=0.400 Sum_probs=51.3
Q ss_pred ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667 (671)
Q Consensus 606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~ 667 (671)
+++|..|.++++|+++| |++||+|++|||.++. ++.++..+|.......+.|.|.|+..
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCE
Confidence 57999999999999999 9999999999999998 67888888877644678899987653
No 38
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.46 E-value=6.5e-07 Score=76.67 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=52.6
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~ 667 (671)
.|++|.+|.++|+|+++| |++||+|++|||.++. ++.++..+|... +...+.|.|.|+.+
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence 489999999999999999 9999999999999999 778888888864 24679999988753
No 39
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.35 E-value=2.2e-06 Score=72.63 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=50.7
Q ss_pred ccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666 (671)
Q Consensus 590 LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~ 666 (671)
||+.+.... .|++|..|.++|+|+++| |++||+|++|||.++.+ +.+++..++ ....+.|+|.|+.
T Consensus 3 ~G~~~~~~~------~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~~--~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDKEE------GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEYQ--AGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEccC------CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhcC--CCCEEEEEEEECC
Confidence 677774321 368999999999999999 99999999999999984 445444332 2357889988865
No 40
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.28 E-value=3e-06 Score=72.10 Aligned_cols=59 Identities=27% Similarity=0.490 Sum_probs=50.2
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|+|+. | |++||+|++|||.++. +.+++..+|... ....+.|.|.|+.+
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 3789999999999986 8 9999999999999998 678888888753 34579999988754
No 41
>KOG3651|consensus
Probab=98.26 E-value=2.4e-06 Score=89.34 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=74.3
Q ss_pred EEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCe
Q psy1156 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN 469 (671)
Q Consensus 390 ~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~ 469 (671)
.|.|.|. ..+-.||+|.||.... +++||..|..+.||++.|+++.||+|++|||+.|.+.+.-++..+++.+.+.
T Consensus 7 ~v~ltKD-~~nliGISIGGGapyC----PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e 81 (429)
T KOG3651|consen 7 TVELTKD-EKNLIGISIGGGAPYC----PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE 81 (429)
T ss_pred cEEEeec-cccceeEEecCCCCcC----CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence 6888885 3578899999998877 8899999999999999999999999999999999999999999999988888
Q ss_pred EEEEEEe
Q psy1156 470 MDLLISR 476 (671)
Q Consensus 470 V~L~V~R 476 (671)
|.+.+..
T Consensus 82 V~IhyNK 88 (429)
T KOG3651|consen 82 VKIHYNK 88 (429)
T ss_pred eEEEehh
Confidence 8888743
No 42
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.25 E-value=4.6e-06 Score=71.78 Aligned_cols=60 Identities=30% Similarity=0.460 Sum_probs=50.9
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++++|+++| |++||+|++|||.++. +..++..++.... ...+.|.|.|+..
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 489999999999999999 9999999999999998 5667777776652 3678999988753
No 43
>KOG0609|consensus
Probab=98.22 E-value=3.4e-06 Score=94.29 Aligned_cols=87 Identities=28% Similarity=0.457 Sum_probs=76.9
Q ss_pred CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463 (671)
Q Consensus 384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L 463 (671)
....++.|.|+|. .+++||++|..... ..++|++|+.||.|++.|.|++||+|++|||+.|.+....++..+|
T Consensus 119 ~~~~vriv~i~k~-~~eplG~Tik~~e~------~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l 191 (542)
T KOG0609|consen 119 PVEAVRIVRIVKN-TGEPLGATIRVEED------TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELL 191 (542)
T ss_pred ccceeEEEEEeec-CCCccceEEEeccC------CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHH
Confidence 3456788999986 36999999996442 3599999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEEEeC
Q psy1156 464 SSGPLNMDLLISRT 477 (671)
Q Consensus 464 ~~~g~~V~L~V~R~ 477 (671)
+...+.++|+|...
T Consensus 192 ~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 192 RNSRGSITFKIIPS 205 (542)
T ss_pred HhCCCcEEEEEccc
Confidence 98889999999654
No 44
>KOG3651|consensus
Probab=98.21 E-value=4.3e-06 Score=87.49 Aligned_cols=81 Identities=30% Similarity=0.505 Sum_probs=71.0
Q ss_pred eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS 657 (671)
Q Consensus 578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~ 657 (671)
+|+|+|.. .+-+|++|-||... +.-+||..|..++||+++|+|+.||.|++|||++|.+.+-.++.++++.+. +.
T Consensus 7 ~v~ltKD~-~nliGISIGGGapy---CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~-~e 81 (429)
T KOG3651|consen 7 TVELTKDE-KNLIGISIGGGAPY---CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL-NE 81 (429)
T ss_pred cEEEeecc-ccceeEEecCCCCc---CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc-cc
Confidence 68898886 57899999877543 335899999999999999999999999999999999999999999999884 88
Q ss_pred EEEEEE
Q psy1156 658 ISLHIC 663 (671)
Q Consensus 658 VtL~V~ 663 (671)
|.++.-
T Consensus 82 V~IhyN 87 (429)
T KOG3651|consen 82 VKIHYN 87 (429)
T ss_pred eEEEeh
Confidence 888763
No 45
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.21 E-value=5.4e-06 Score=91.54 Aligned_cols=78 Identities=27% Similarity=0.396 Sum_probs=61.3
Q ss_pred CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666 (671)
Q Consensus 588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~ 666 (671)
.++|+.+.-.........|++|..|.++|||+++| |++||+|++|||++|.+++..++..+|+......|.|+|.|..
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 56788775322210001378999999999999999 9999999999999999888899998887654467899988754
No 46
>KOG3542|consensus
Probab=98.18 E-value=2.1e-06 Score=96.96 Aligned_cols=84 Identities=27% Similarity=0.548 Sum_probs=74.3
Q ss_pred ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654 (671)
Q Consensus 575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg 654 (671)
..+.|.|+|..-...|-|.+.||.+.. .||||.+|.||+-|++.| |+.||+||+|||++..+++...|+++|+..
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn- 609 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN- 609 (1283)
T ss_pred cceeEEEecccccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence 456889998766789999999998765 699999999999999999 999999999999999999999999999975
Q ss_pred CCcEEEEEEe
Q psy1156 655 NGSISLHICR 664 (671)
Q Consensus 655 ~~~VtL~V~R 664 (671)
-.++|+|..
T Consensus 610 -thLtltvKt 618 (1283)
T KOG3542|consen 610 -THLTLTVKT 618 (1283)
T ss_pred -ceEEEEEec
Confidence 467777754
No 47
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.18 E-value=7.2e-06 Score=69.45 Aligned_cols=67 Identities=27% Similarity=0.362 Sum_probs=51.7
Q ss_pred ccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCc
Q psy1156 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSL 479 (671)
Q Consensus 402 LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~ 479 (671)
+|+.+.... .+++|..|.+++||+.+| |++||+|++|||..+.. ...+...+ ..+..+.|++.|.+.
T Consensus 3 ~G~~~~~~~-------~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 3 LGLTLDKEE-------GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred ccEEEEccC-------CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence 677665321 579999999999999999 99999999999999975 33333333 256788999988765
No 48
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.17 E-value=5.5e-06 Score=89.46 Aligned_cols=73 Identities=30% Similarity=0.455 Sum_probs=61.1
Q ss_pred CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667 (671)
Q Consensus 588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~ 667 (671)
.++|+.+.... .+++|..|.++|||+++| |++||+|++|||+++.+++..++..+|+......|.|+|.|...
T Consensus 51 ~~lG~~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 51 EGIGIQVGMDD------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred EEEEEEEEEEC------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 56888875432 268999999999999999 99999999999999998888888888876545679999988753
No 49
>KOG3552|consensus
Probab=98.15 E-value=1.8e-06 Score=100.50 Aligned_cols=78 Identities=21% Similarity=0.381 Sum_probs=68.5
Q ss_pred CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG 466 (671)
Q Consensus 387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~ 466 (671)
.++.|++++. ..|||.++.| .+++|..|.+|||+. |.|++||+|++|||.+|.+.+.+.++.+++.+
T Consensus 55 ~pr~vq~~r~---~~lGFgfvag--------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRac 121 (1298)
T KOG3552|consen 55 EPRQVQLQRN---ASLGFGFVAG--------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRAC 121 (1298)
T ss_pred cchhhhhhcc---ccccceeecC--------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHH
Confidence 3577888663 5777777754 579999999999995 88999999999999999999999999999999
Q ss_pred CCeEEEEEEeC
Q psy1156 467 PLNMDLLISRT 477 (671)
Q Consensus 467 g~~V~L~V~R~ 477 (671)
...|.|+|+++
T Consensus 122 e~sv~ltV~qP 132 (1298)
T KOG3552|consen 122 ESSVNLTVCQP 132 (1298)
T ss_pred hhhcceEEecc
Confidence 99999999985
No 50
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.15 E-value=9.6e-06 Score=69.42 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCcc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSLK 480 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~~ 480 (671)
.|++|..|.+++||+.+| |++||+|++|||..+.. ..++...+.. .+..+.|++.|.++.
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 689999999999999999 99999999999999984 4567777764 367899999987653
No 51
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=6.5e-06 Score=91.43 Aligned_cols=74 Identities=27% Similarity=0.376 Sum_probs=65.6
Q ss_pred CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666 (671)
Q Consensus 587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~ 666 (671)
.+++|+.+.-... .+++|.++.+++||+++| |++||+|+.|||.++.+++..+|+..|+..+...|+|+|.|..
T Consensus 99 ~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 99 FGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred ccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 3788888876542 378999999999999999 9999999999999999999999999999876567999999973
No 52
>KOG3606|consensus
Probab=98.14 E-value=3.7e-06 Score=86.84 Aligned_cols=85 Identities=25% Similarity=0.372 Sum_probs=71.2
Q ss_pred eeEEEeeCCCCCcccEEEecCCCCC---C---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy1156 577 HTIVFEKGPGKKGLGFTIVGGKDSP---R---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLF 650 (671)
Q Consensus 577 ~~V~L~K~~g~~~LGfsL~Gg~ds~---~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lL 650 (671)
+.|.|.|-....+|||.|+.|.... . ...||||+++.|||.|+..|-|-+.|+||||||+.|.+.+..++.+++
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 4678887766789999999886532 1 246999999999999999999999999999999999999999999998
Q ss_pred HhcCCCcEEEEE
Q psy1156 651 KTIKNGSISLHI 662 (671)
Q Consensus 651 K~sg~~~VtL~V 662 (671)
-+.. -.+.++|
T Consensus 240 vANs-hNLIiTV 250 (358)
T KOG3606|consen 240 VANS-HNLIITV 250 (358)
T ss_pred hhcc-cceEEEe
Confidence 7653 4555555
No 53
>KOG4371|consensus
Probab=98.10 E-value=1.1e-05 Score=95.05 Aligned_cols=181 Identities=22% Similarity=0.411 Sum_probs=127.3
Q ss_pred EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468 (671)
Q Consensus 389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~ 468 (671)
+.|.+-+ ++ +.||..+.... .-+-|+...-.+.-.+-. |.+||.++.|||+.+++.-|.+++.+++..+.
T Consensus 1149 i~~~~~r-~~-~~l~~~~a~~~-------~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~ 1218 (1332)
T KOG4371|consen 1149 IDVELDR-NE-GSLGVQIASLS-------GRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGD 1218 (1332)
T ss_pred ccccCCC-CC-CCCCceeccCc-------cceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCc
Confidence 3344433 43 89999888543 224444444333333334 99999999999999999999999999998899
Q ss_pred eEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCC
Q psy1156 469 NMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSI 548 (671)
Q Consensus 469 ~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~ 548 (671)
.|.|.|+|........ + ..+...
T Consensus 1219 ~~~~~~~r~~~~~~d~---------------------------------~-----------------------~~s~~~- 1241 (1332)
T KOG4371|consen 1219 RVVLGVQRPPPAYSDQ---------------------------------H-----------------------HASSTS- 1241 (1332)
T ss_pred eEEEEeecCCcccccc---------------------------------h-----------------------hhhhhc-
Confidence 9999999865421110 0 000000
Q ss_pred CCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCC
Q psy1156 549 SGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628 (671)
Q Consensus 549 s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GD 628 (671)
.+ ...+.|.|.+.+ ..++|+.+.....+ .|+||..|..++.|...|.||+||
T Consensus 1242 -~~----------------------~~l~~~~~~~~p-~~~~~~~~~~~~~s----~~~~~~~~~~~~~a~~~~~~r~g~ 1293 (1332)
T KOG4371|consen 1242 -AS----------------------APLISVMLLKKP-MATLGLSLAKRTMS----DGIFIRNIAQDSAASSEGTLRVGD 1293 (1332)
T ss_pred -cc----------------------chhhhheeeecc-cccccccccccCcC----Cceeeecccccccccccccccccc
Confidence 00 011234444444 47899998766554 489999999999999999999999
Q ss_pred EEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665 (671)
Q Consensus 629 rILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr 665 (671)
+++..+|+++.+.+-.+..+.++=. .+.|.++|.|.
T Consensus 1294 ~~~~~~~~~~~~~~p~~~l~~~~~v-~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1294 RLVSLDGEPVDGFTPATILEKLKLV-QGPVQITVTRE 1329 (1332)
T ss_pred eeeccCCccCCCCChHHHHHHhhhc-cCchhheehhh
Confidence 9999999999998888888887743 57888888764
No 54
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.06 E-value=1.8e-05 Score=66.66 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC-CCeEEEEEEeCCc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG-PLNMDLLISRTSL 479 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~-g~~V~L~V~R~~~ 479 (671)
..++|..|.+++||+.+| |++||+|++|||..+.+ ..++...+... +..+.+++.|.+.
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence 458999999999999999 99999999999999975 45666666643 5688999988664
No 55
>KOG3605|consensus
Probab=98.02 E-value=8.1e-06 Score=92.45 Aligned_cols=88 Identities=33% Similarity=0.472 Sum_probs=72.5
Q ss_pred ceeeEEEeeCCCCCcccEEEec-CCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156 575 TFHTIVFEKGPGKKGLGFTIVG-GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI 653 (671)
Q Consensus 575 ~~~~V~L~K~~g~~~LGfsL~G-g~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s 653 (671)
..+.|+|.|..| +.||+.|+. |+++.. .-|+|.....+|||+++|.|-.||+|++|||.++.++++..+...||..
T Consensus 645 ~qKEVvv~K~kG-EiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~ 721 (829)
T KOG3605|consen 645 NQKEVVLEKHKG-EILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL 721 (829)
T ss_pred ccceeeeecccC-ceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence 567899999885 899998864 444432 2478999999999999999999999999999999999999999999988
Q ss_pred CCCc-EEEEEEeC
Q psy1156 654 KNGS-ISLHICRR 665 (671)
Q Consensus 654 g~~~-VtL~V~Rr 665 (671)
+..+ |.|.|.+=
T Consensus 722 KnQT~VkltiV~c 734 (829)
T KOG3605|consen 722 KNQTAVKLNIVSC 734 (829)
T ss_pred cccceEEEEEecC
Confidence 6443 77766543
No 56
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.95 E-value=2.1e-05 Score=92.03 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=59.6
Q ss_pred CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECC-----eecCCCCHHHHHHHHHhcCCCcEEEEE
Q psy1156 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING-----QVCHDLTHLEAISLFKTIKNGSISLHI 662 (671)
Q Consensus 588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG-----~sV~~lSheEAV~lLK~sg~~~VtL~V 662 (671)
.++|+.+.... .+++|.+|.|||||++++.|++||+|++||| ++|.+++..+++.+|+......|.|+|
T Consensus 244 ~GIGa~l~~~~------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV 317 (667)
T PRK11186 244 EGIGAVLQMDD------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEI 317 (667)
T ss_pred eEEEEEEEEeC------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEE
Confidence 56788875432 2689999999999999844999999999994 466789999999999976556799999
Q ss_pred EeCC
Q psy1156 663 CRRL 666 (671)
Q Consensus 663 ~Rr~ 666 (671)
.|..
T Consensus 318 ~r~~ 321 (667)
T PRK11186 318 LPAG 321 (667)
T ss_pred EeCC
Confidence 8843
No 57
>KOG0609|consensus
Probab=97.93 E-value=2.4e-05 Score=87.69 Aligned_cols=84 Identities=29% Similarity=0.427 Sum_probs=73.8
Q ss_pred ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654 (671)
Q Consensus 575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg 654 (671)
..+.|.|.|.. +..||.++.-..+. .+||..|..||.|++.|.|++||.|++|||++|.+....++..+|+.+.
T Consensus 122 ~vriv~i~k~~-~eplG~Tik~~e~~-----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~ 195 (542)
T KOG0609|consen 122 AVRIVRIVKNT-GEPLGATIRVEEDT-----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR 195 (542)
T ss_pred eeEEEEEeecC-CCccceEEEeccCC-----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence 46778888885 48999999865442 3899999999999999999999999999999999999999999999995
Q ss_pred CCcEEEEEEeC
Q psy1156 655 NGSISLHICRR 665 (671)
Q Consensus 655 ~~~VtL~V~Rr 665 (671)
+.|+++|.-.
T Consensus 196 -G~itfkiiP~ 205 (542)
T KOG0609|consen 196 -GSITFKIIPS 205 (542)
T ss_pred -CcEEEEEccc
Confidence 9999998544
No 58
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.92 E-value=3.4e-05 Score=83.40 Aligned_cols=73 Identities=30% Similarity=0.513 Sum_probs=61.0
Q ss_pred CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCeEEEEEEeCC
Q psy1156 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRTS 478 (671)
Q Consensus 400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~V~L~V~R~~ 478 (671)
.++|+.+.... .+++|..|.++|||+++| |++||+|++|||+.+.+++..++..++.. .+..+.|+|.|.+
T Consensus 51 ~~lG~~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 51 EGIGIQVGMDD-------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEEEC-------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 46788776422 579999999999999999 99999999999999999887777777763 5778999999976
Q ss_pred cc
Q psy1156 479 LK 480 (671)
Q Consensus 479 ~~ 480 (671)
..
T Consensus 123 ~~ 124 (334)
T TIGR00225 123 KS 124 (334)
T ss_pred CC
Confidence 43
No 59
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.91 E-value=4.4e-05 Score=84.35 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=61.2
Q ss_pred CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCeEEEEEEeCC
Q psy1156 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRTS 478 (671)
Q Consensus 400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~V~L~V~R~~ 478 (671)
.++|+.+....... +...+++|..|.++|||+++| |++||+|++|||++|.+++..++..+++. .+..|.|+|.|.+
T Consensus 85 ~GiG~~~~~~~~~~-~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 85 TGVGLEVGYPTGSD-GPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred eEEEEEEEEccCCC-CccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 46777765322110 001379999999999999999 99999999999999999888888888873 5678999999876
Q ss_pred c
Q psy1156 479 L 479 (671)
Q Consensus 479 ~ 479 (671)
.
T Consensus 163 ~ 163 (389)
T PLN00049 163 E 163 (389)
T ss_pred E
Confidence 5
No 60
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.90 E-value=3.5e-05 Score=66.25 Aligned_cols=59 Identities=27% Similarity=0.446 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSL 479 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~ 479 (671)
.|++|..|.+++||+++| |++||+|++|||..+.++ .++..++.. .+..+.|++.|++.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 589999999999999999 999999999999999754 345555553 37789999988764
No 61
>KOG3542|consensus
Probab=97.88 E-value=2.2e-05 Score=89.05 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=75.9
Q ss_pred CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464 (671)
Q Consensus 385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~ 464 (671)
...++.|.|.|.....+|-|.+.||.+.+ -||||..|.||+-|++.| |+.||+|++|||+..+..+...|+.+|+
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEkG----fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLr 607 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEKG----FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILR 607 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCcccc----ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhc
Confidence 45788999999555689999999998776 689999999999999999 9999999999999999999999999999
Q ss_pred cCCCeEEEEEEeC
Q psy1156 465 SGPLNMDLLISRT 477 (671)
Q Consensus 465 ~~g~~V~L~V~R~ 477 (671)
+ ...++|+|..+
T Consensus 608 n-nthLtltvKtN 619 (1283)
T KOG3542|consen 608 N-NTHLTLTVKTN 619 (1283)
T ss_pred C-CceEEEEEecc
Confidence 4 45667776543
No 62
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.87 E-value=5.4e-05 Score=79.44 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=52.8
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~ 667 (671)
.|+.|..|.++++|++.| |++||+|++|||.++. +..++..++.+.. ...+.|+|.|+..
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 489999999999999999 9999999999999998 6788888887753 3579999999864
No 63
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=5.4e-05 Score=84.16 Aligned_cols=74 Identities=27% Similarity=0.426 Sum_probs=64.2
Q ss_pred CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeEEEEEEe
Q psy1156 398 FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNMDLLISR 476 (671)
Q Consensus 398 ~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V~L~V~R 476 (671)
.-+++|+.+.-... .++.|.++.+++||+++| |++||.|+.|||.++.+++..+++..|+ ..+..|+|+|.|
T Consensus 98 ~~~GiG~~i~~~~~------~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r 170 (406)
T COG0793 98 EFGGIGIELQMEDI------GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILR 170 (406)
T ss_pred cccceeEEEEEecC------CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEE
Confidence 34778888875432 468999999999999999 9999999999999999999999999998 557789999999
Q ss_pred CC
Q psy1156 477 TS 478 (671)
Q Consensus 477 ~~ 478 (671)
.+
T Consensus 171 ~~ 172 (406)
T COG0793 171 AG 172 (406)
T ss_pred cC
Confidence 73
No 64
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.79 E-value=6.3e-05 Score=63.98 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK 480 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~ 480 (671)
.|++|..|.+++||+. | |++||+|++|||..+.. .+++..++. ..+..+.|++.|.+..
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~ 68 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKE 68 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 5899999999999986 8 99999999999999974 455666665 3467899999987653
No 65
>PRK10139 serine endoprotease; Provisional
Probab=97.72 E-value=8e-05 Score=84.01 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=52.2
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|||+++| |++||+|++|||++|. ++.++...|.. .....+.|.|.|+.+
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~ 350 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK 350 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 589999999999999999 9999999999999998 77888888875 334679999988753
No 66
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.72 E-value=7.7e-05 Score=81.37 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=51.9
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|||+++| |++||+|++|||+++. +..++..+|... +.+.|.|+|.|+.+
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 489999999999999999 9999999999999998 678888877652 34679999998754
No 67
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.67 E-value=9.3e-05 Score=82.56 Aligned_cols=60 Identities=28% Similarity=0.449 Sum_probs=51.3
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|||+++| |++||+|++|||+++. ++.++..++... ....|.|+|.|+.+
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~ 317 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGK 317 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 589999999999999999 9999999999999998 667777777653 23679999988754
No 68
>PRK10898 serine endoprotease; Provisional
Probab=97.65 E-value=6.6e-05 Score=81.98 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=66.0
Q ss_pred cccchhccccCCCCCCCCeEEEEEEeCCC--CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccC
Q psy1156 370 MMEISELSSENSEDSQEGQTMVRVNRRDF--NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447 (671)
Q Consensus 370 ~~~~v~~~~~~~~~~~~~~~~V~L~k~~~--~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVN 447 (671)
..+.+..++...+...++|..|.+..-.+ ...+|+. . ..|++|..|.+++||+++| |++||+|++||
T Consensus 239 ~~~~~~~~l~~~G~~~~~~lGi~~~~~~~~~~~~~~~~------~----~~Gv~V~~V~~~spA~~aG-L~~GDvI~~In 307 (353)
T PRK10898 239 LATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGID------Q----LQGIVVNEVSPDGPAAKAG-IQVNDLIISVN 307 (353)
T ss_pred HHHHHHHHHhhcCcccccccceEEEECCHHHHHhcCCC------C----CCeEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 34444455555556666677666543211 1122211 1 1689999999999999999 99999999999
Q ss_pred CeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156 448 GQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK 480 (671)
Q Consensus 448 G~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~ 480 (671)
|+.+.++ .+....+. ..+..+.|+|.|.++.
T Consensus 308 g~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 308 NKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred CEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 9999764 33333333 4677899999998753
No 69
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.64 E-value=0.00012 Score=85.71 Aligned_cols=71 Identities=25% Similarity=0.370 Sum_probs=57.7
Q ss_pred CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccC--C---eeccCCCHHHHHHHHh-cCCCeEEEE
Q psy1156 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN--G---QRLRGLTMTQAKSIIS-SGPLNMDLL 473 (671)
Q Consensus 400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVN--G---~~V~~~s~~~av~~L~-~~g~~V~L~ 473 (671)
.++|+.+.... .+++|..|.+||||++++.|++||+|++|| | .++.++...+++.+|+ ..|..|.|+
T Consensus 244 ~GIGa~l~~~~-------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~Lt 316 (667)
T PRK11186 244 EGIGAVLQMDD-------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLE 316 (667)
T ss_pred eEEEEEEEEeC-------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEE
Confidence 56777776422 468999999999999983399999999999 4 3566888999999998 457789999
Q ss_pred EEeC
Q psy1156 474 ISRT 477 (671)
Q Consensus 474 V~R~ 477 (671)
|.|.
T Consensus 317 V~r~ 320 (667)
T PRK11186 317 ILPA 320 (667)
T ss_pred EEeC
Confidence 9884
No 70
>PRK10898 serine endoprotease; Provisional
Probab=97.63 E-value=0.00014 Score=79.50 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=50.7
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|||+++| |++||+|++|||++|. +..+....|.. .....+.|.|.|+.+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 599999999999999999 9999999999999998 56676666655 234679999988754
No 71
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.60 E-value=6.7e-05 Score=81.83 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=69.4
Q ss_pred cccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccC
Q psy1156 370 MMEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447 (671)
Q Consensus 370 ~~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVN 447 (671)
..+.+..++...+...+.|..+.+..-. ....||+. .. .|++|..|.+++||+++| |++||+|++||
T Consensus 238 ~~~~vl~~l~~~g~~~r~~lGv~~~~~~~~~~~~lgl~------~~----~Gv~V~~V~~~spA~~aG-L~~GDvI~~In 306 (351)
T TIGR02038 238 LAHKIMGKIIRDGRVIRGYIGVSGEDINSVVAQGLGLP------DL----RGIVITGVDPNGPAARAG-ILVRDVILKYD 306 (351)
T ss_pred HHHHHHHHHhhcCcccceEeeeEEEECCHHHHHhcCCC------cc----ccceEeecCCCChHHHCC-CCCCCEEEEEC
Confidence 3444555555566666777777765421 11234441 11 689999999999999999 99999999999
Q ss_pred CeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156 448 GQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK 480 (671)
Q Consensus 448 G~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~ 480 (671)
|+.+..+ .+....+. ..+..+.|+|.|++..
T Consensus 307 g~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 307 GKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred CEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 9999754 44445554 4678899999998753
No 72
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.55 E-value=0.00022 Score=74.87 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK 480 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~ 480 (671)
.|+.|..+.+++||+++| |+.||+|++|||+++.++ .++..++. ..+..+.|+|.|+++.
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 689999999999999999 999999999999999864 44444444 2557899999998864
No 73
>PRK10942 serine endoprotease; Provisional
Probab=97.54 E-value=0.00022 Score=80.86 Aligned_cols=60 Identities=28% Similarity=0.437 Sum_probs=51.7
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|+|+++| |++||+|++|||+.|. +..+....|... +...+.|.|.|+.+
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~ 371 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK 371 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCe
Confidence 589999999999999999 9999999999999998 678887777654 23578999988764
No 74
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.37 E-value=0.00062 Score=75.35 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=55.4
Q ss_pred CCcccEEEecCCCCCCCCcceeEEEeC--------CCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcE
Q psy1156 587 KKGLGFTIVGGKDSPRGAIGIFIKSIL--------DNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSI 658 (671)
Q Consensus 587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~--------pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~V 658 (671)
...+|+.+.- .||+|.... .++||+++| |++||+|++|||.+|. +.+++.++|++.+...+
T Consensus 95 G~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V 163 (402)
T TIGR02860 95 GQSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKL 163 (402)
T ss_pred CEEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeE
Confidence 3567777642 378876542 258999999 9999999999999998 78999999988766779
Q ss_pred EEEEEeCC
Q psy1156 659 SLHICRRL 666 (671)
Q Consensus 659 tL~V~Rr~ 666 (671)
.|.|.|+.
T Consensus 164 ~LtV~R~G 171 (402)
T TIGR02860 164 TLTIERGG 171 (402)
T ss_pred EEEEEECC
Confidence 99998865
No 75
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.36 E-value=0.00036 Score=78.51 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=48.1
Q ss_pred eeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK 667 (671)
Q Consensus 607 VfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~ 667 (671)
.+|..|.++|||+++| |++||+|++|||++|. +.++....+... +..++.++|.|+.+
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCc
Confidence 3789999999999999 9999999999999998 556666555443 33579999999875
No 76
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.31 E-value=0.0008 Score=64.37 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=53.6
Q ss_pred CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCC-CCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE-GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665 (671)
Q Consensus 587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~-GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr 665 (671)
.+.||++|.-.........+.-|.+|.|+|||+++| |++ .|.|+.+++..+. +.++..++++..-...+.|.|..-
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEET
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEEC
Confidence 367999986554432334578899999999999999 998 6999999998887 456777777776567899999754
Q ss_pred C
Q psy1156 666 L 666 (671)
Q Consensus 666 ~ 666 (671)
.
T Consensus 102 ~ 102 (138)
T PF04495_consen 102 K 102 (138)
T ss_dssp T
T ss_pred C
Confidence 3
No 77
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.19 E-value=0.00075 Score=75.46 Aligned_cols=59 Identities=27% Similarity=0.380 Sum_probs=50.8
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~ 667 (671)
.|.+|..|.++|||+++| |++||+|++|||..+. +..++...+.... +.+.+.|.|+.+
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~-~~v~~~I~r~g~ 186 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIA-GEPMVEILAERE 186 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhc-ccceEEEEEecC
Confidence 367999999999999999 9999999999999998 6788888777765 788888888543
No 78
>KOG3938|consensus
Probab=97.17 E-value=0.00075 Score=70.06 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=71.9
Q ss_pred CCCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156 383 DSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSI 462 (671)
Q Consensus 383 ~~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~ 462 (671)
.+.+..+.|.++|.. ..||++|.... . +-+||.+|.+||.-++--.+++||.|-+|||++|.++.|-++..+
T Consensus 122 HvkGq~kEv~v~Kse--dalGlTITDNG---~---GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArm 193 (334)
T KOG3938|consen 122 HVKGQAKEVEVVKSE--DALGLTITDNG---A---GYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARM 193 (334)
T ss_pred hhcCcceeEEEEecc--cccceEEeeCC---c---ceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHH
Confidence 445667889999964 89999999532 1 348999999999999988899999999999999999999999999
Q ss_pred Hhc--CCCeEEEEEEeC
Q psy1156 463 ISS--GPLNMDLLISRT 477 (671)
Q Consensus 463 L~~--~g~~V~L~V~R~ 477 (671)
|+. .+...+|.+.-+
T Consensus 194 LKel~rge~ftlrLieP 210 (334)
T KOG3938|consen 194 LKELPRGETFTLRLIEP 210 (334)
T ss_pred HHhcccCCeeEEEeecc
Confidence 994 456666666544
No 79
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.17 E-value=0.0027 Score=60.80 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=57.4
Q ss_pred CCeEEEEEEeCC---CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCC-CCEEEccCCeeccCCCHHHHHH
Q psy1156 386 EGQTMVRVNRRD---FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL-GDEIISVNGQRLRGLTMTQAKS 461 (671)
Q Consensus 386 ~~~~~V~L~k~~---~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~-GD~IlaVNG~~V~~~s~~~av~ 461 (671)
..+|.|.|+..+ ..+.||++|.-........ .++-|-+|.|+|||+.|| |.+ .|.|+.+++..+.+. +....
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~-~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~ 84 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEE-EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFE 84 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCC-CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEeccccccc-ceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHH
Confidence 456778876632 2588999988654332122 689999999999999999 887 699999999888753 44455
Q ss_pred HHh-cCCCeEEEEEEeCC
Q psy1156 462 IIS-SGPLNMDLLISRTS 478 (671)
Q Consensus 462 ~L~-~~g~~V~L~V~R~~ 478 (671)
.+. ..+..+.|.|....
T Consensus 85 ~v~~~~~~~l~L~Vyns~ 102 (138)
T PF04495_consen 85 LVEANENKPLQLYVYNSK 102 (138)
T ss_dssp HHHHTTTS-EEEEEEETT
T ss_pred HHHHcCCCcEEEEEEECC
Confidence 555 56778999997643
No 80
>KOG3834|consensus
Probab=96.94 E-value=0.009 Score=65.94 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEe
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R 476 (671)
.|.-|-+|..+++|.++|..---|-|++|||..+. .+.+.....|+..-..|.|+|..
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sekVkltv~n 72 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEKVKLTVYN 72 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccceEEEEEe
Confidence 67888899999999999977777999999999884 45566777777544459999865
No 81
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.89 E-value=0.0034 Score=55.70 Aligned_cols=60 Identities=30% Similarity=0.402 Sum_probs=40.3
Q ss_pred ceeEEEeCCC--------CHHhHhCC-CCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156 606 GIFIKSILDN--------GQAAEDGR-LKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667 (671)
Q Consensus 606 GVfIssV~pg--------SpAaraGr-Lr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~ 667 (671)
+..|.+|.++ ||.++.|- +++||.|++|||++|. .-.....+|.......|.|+|.+...
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence 5778888886 77777772 5699999999999997 33556677776655789999988764
No 82
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0017 Score=70.48 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=69.7
Q ss_pred ccccchhccccCCCCCCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCC
Q psy1156 369 SMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448 (671)
Q Consensus 369 s~~~~v~~~~~~~~~~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG 448 (671)
.....+..++...+...+++..+.+..-.....+|+.. . .|++|..|.+++||+++| ++.||.|+++||
T Consensus 231 ~~~~~v~~~l~~~G~v~~~~lgv~~~~~~~~~~~g~~~------~----~G~~V~~v~~~spa~~ag-i~~Gdii~~vng 299 (347)
T COG0265 231 NLVAPVLDELISKGKVVRGYLGVIGEPLTADIALGLPV------A----AGAVVLGVLPGSPAAKAG-IKAGDIITAVNG 299 (347)
T ss_pred HHHHHHHHHHHHcCCccccccceEEEEcccccccCCCC------C----CceEEEecCCCChHHHcC-CCCCCEEEEECC
Confidence 33444444445444666677776665422222366431 1 689999999999999999 999999999999
Q ss_pred eeccCCCHHHHHHHHhcCCCeEEEEEEeCCcccc
Q psy1156 449 QRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKS 482 (671)
Q Consensus 449 ~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~ 482 (671)
..+.+.......-.....+..+.+.+.|.++...
T Consensus 300 ~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~ 333 (347)
T COG0265 300 KPVASLSDLVAAVASNRPGDEVALKLLRGGKERE 333 (347)
T ss_pred EEccCHHHHHHHHhccCCCCEEEEEEEECCEEEE
Confidence 9997653332222222467899999999866443
No 83
>KOG3938|consensus
Probab=96.83 E-value=0.0021 Score=66.87 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=66.9
Q ss_pred eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG 656 (671)
Q Consensus 577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~ 656 (671)
..|.+.|.. ..||++|...- ..=.||+.|.++|.-++--.+.+||-|-+|||++|.++.|-++..+||+.+++
T Consensus 128 kEv~v~Kse--dalGlTITDNG-----~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 128 KEVEVVKSE--DALGLTITDNG-----AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred eeEEEEecc--cccceEEeeCC-----cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 478888886 78999997421 11259999999999999667999999999999999999999999999998754
Q ss_pred -cEEEEEEeC
Q psy1156 657 -SISLHICRR 665 (671)
Q Consensus 657 -~VtL~V~Rr 665 (671)
+.+|.+.-.
T Consensus 201 e~ftlrLieP 210 (334)
T KOG3938|consen 201 ETFTLRLIEP 210 (334)
T ss_pred CeeEEEeecc
Confidence 466665443
No 84
>KOG1421|consensus
Probab=96.78 E-value=0.015 Score=67.23 Aligned_cols=94 Identities=27% Similarity=0.340 Sum_probs=65.9
Q ss_pred CCCCCCCeEEEEEEe--CCCCCcccEEEe-----eecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccC
Q psy1156 381 SEDSQEGQTMVRVNR--RDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453 (671)
Q Consensus 381 ~~~~~~~~~~V~L~k--~~~~~~LGfsI~-----gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~ 453 (671)
..+..+|...|++.. -+....||++-. .... + +.-+-++|..|.++|||++. |++||++++||+..+.
T Consensus 261 n~PItRGtLqvefl~k~~de~rrlGL~sE~eqv~r~k~-P-~~tgmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~- 335 (955)
T KOG1421|consen 261 NTPITRGTLQVEFLHKLFDECRRLGLSSEWEQVVRTKF-P-ERTGMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLN- 335 (955)
T ss_pred CCCcccceEEEEEehhhhHHHHhcCCcHHHHHHHHhcC-c-ccceeEEEEEeccCCchhhc--cCCCcEEEEEcceehH-
Confidence 556788888888865 223457786411 1111 1 11133788899999999863 9999999999987774
Q ss_pred CCHHHHHHHHh-cCCCeEEEEEEeCCcc
Q psy1156 454 LTMTQAKSIIS-SGPLNMDLLISRTSLK 480 (671)
Q Consensus 454 ~s~~~av~~L~-~~g~~V~L~V~R~~~~ 480 (671)
+...+.++|. ..+..+.|+|+|.++.
T Consensus 336 -df~~l~~iLDegvgk~l~LtI~Rggqe 362 (955)
T KOG1421|consen 336 -DFEALEQILDEGVGKNLELTIQRGGQE 362 (955)
T ss_pred -HHHHHHHHHhhccCceEEEEEEeCCEE
Confidence 3456666665 5788999999998874
No 85
>KOG0606|consensus
Probab=96.63 E-value=0.0029 Score=76.38 Aligned_cols=79 Identities=29% Similarity=0.410 Sum_probs=62.8
Q ss_pred eEEEeeCCCCCcccEEEec------CCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156 578 TIVFEKGPGKKGLGFTIVG------GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK 651 (671)
Q Consensus 578 ~V~L~K~~g~~~LGfsL~G------g~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK 651 (671)
.|.+.+.. ..|||++.. ..+ .-..-..|.+|.+++||..+| |++||.|.-|||++|.++.|.+++++|-
T Consensus 629 pI~i~~~~--~~yGft~~airVy~Gd~d--~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll 703 (1205)
T KOG0606|consen 629 PITIHFSG--KKYGFTLRAIRVYMGDKD--VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLL 703 (1205)
T ss_pred ceeeeccc--cccCceeeeEEEecCCcc--cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHH
Confidence 46676665 789988743 222 112246788999999999999 9999999999999999999999999998
Q ss_pred hcCCCcEEEEE
Q psy1156 652 TIKNGSISLHI 662 (671)
Q Consensus 652 ~sg~~~VtL~V 662 (671)
+.+ ..|+|.+
T Consensus 704 ~~g-n~v~~~t 713 (1205)
T KOG0606|consen 704 KSG-NKVTLRT 713 (1205)
T ss_pred hcC-CeeEEEe
Confidence 775 6677655
No 86
>KOG1421|consensus
Probab=96.39 E-value=0.013 Score=67.82 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=44.5
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS 657 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~ 657 (671)
.||||...-.+|||.+ + |++-.-|.+|||+.+. ++++.+.+|++.+.+.
T Consensus 862 ~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ipdns 910 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIPDNS 910 (955)
T ss_pred CceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCCCCc
Confidence 4899999999999999 6 9999999999999988 7899999999987443
No 87
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.29 E-value=0.014 Score=64.97 Aligned_cols=71 Identities=21% Similarity=0.482 Sum_probs=53.8
Q ss_pred CCcccEEEeeecCCCCCCcCcEEEEEEc--------CCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCe
Q psy1156 399 NEELGIYIAKIKNSSEGNIGGFVVAHIV--------SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLN 469 (671)
Q Consensus 399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~--------pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~ 469 (671)
+.++|+.+.- .||+|.... .++||+.+| |++||.|++|||..+..+ +++..++.. .+..
T Consensus 95 G~~iGI~l~t---------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~ 162 (402)
T TIGR02860 95 GQSIGVKLNT---------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGEK 162 (402)
T ss_pred CEEEEEEEec---------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCe
Confidence 4677777752 677775542 368999999 999999999999999754 566666663 3678
Q ss_pred EEEEEEeCCccc
Q psy1156 470 MDLLISRTSLKK 481 (671)
Q Consensus 470 V~L~V~R~~~~~ 481 (671)
+.|+|.|++...
T Consensus 163 V~LtV~R~Ge~~ 174 (402)
T TIGR02860 163 LTLTIERGGKII 174 (402)
T ss_pred EEEEEEECCEEE
Confidence 999999987643
No 88
>KOG4407|consensus
Probab=96.28 E-value=0.0053 Score=74.54 Aligned_cols=56 Identities=30% Similarity=0.501 Sum_probs=50.4
Q ss_pred eeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEe
Q psy1156 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664 (671)
Q Consensus 607 VfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~R 664 (671)
|||++|+++++|.-+. |+-||++++||..++.++...++|-+++..+ ...+|+|.-
T Consensus 145 ~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~-~~~~~~~~P 200 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP-AVLTLHVVP 200 (1973)
T ss_pred hhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCC-CCCCceecc
Confidence 6999999999999998 9999999999999999999999999999875 566777653
No 89
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.013 Score=63.61 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=51.1
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~ 667 (671)
.|++|..|.++|||+++| |+.||.|+++||..+. +..+.+..+.... ...+.+.+.|+.+
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCE
Confidence 579999999999999999 9999999999999998 6677777666543 4579999999854
No 90
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.22 E-value=0.0047 Score=69.07 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=34.5
Q ss_pred EEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156 609 IKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK 651 (671)
Q Consensus 609 IssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK 651 (671)
|..|.|+|+|+++| |++||+|++|||+.|. ++.++...+.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~ 41 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA 41 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc
Confidence 67899999999999 9999999999999998 6677654443
No 91
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.20 E-value=0.03 Score=49.72 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=43.2
Q ss_pred cccEEEeeecCCCCCCcCcEEEEEEcCC--------ChhhhcC-CCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeE
Q psy1156 401 ELGIYIAKIKNSSEGNIGGFVVAHIVSG--------GLAEKEG-CLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNM 470 (671)
Q Consensus 401 ~LGfsI~gg~~~~~g~~~GI~Vs~V~pG--------spA~raG-~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V 470 (671)
-||..+.-.. .+..|.+|.+| ||....| .+++||.|++|||+.|..-. ....+|. .++..|
T Consensus 2 ~LGAd~~~~~-------~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V 72 (88)
T PF14685_consen 2 LLGADFSYDN-------GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQV 72 (88)
T ss_dssp B-SEEEEEET-------TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEE
T ss_pred ccceEEEEcC-------CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEE
Confidence 4666555432 67889999987 5666666 35699999999999996532 2334444 678899
Q ss_pred EEEEEeCCc
Q psy1156 471 DLLISRTSL 479 (671)
Q Consensus 471 ~L~V~R~~~ 479 (671)
.|+|.+...
T Consensus 73 ~Ltv~~~~~ 81 (88)
T PF14685_consen 73 LLTVNRKPG 81 (88)
T ss_dssp EEEEE-STT
T ss_pred EEEEecCCC
Confidence 999987543
No 92
>KOG3532|consensus
Probab=96.02 E-value=0.018 Score=66.53 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=58.0
Q ss_pred CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666 (671)
Q Consensus 587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~ 666 (671)
...+|+....... ..|-|..|.++++|.++. |.+||++++|||++|+ +..++...++.. .+.|+.++.|..
T Consensus 385 s~~ig~vf~~~~~-----~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~-~~~~~~l~~~~~ 455 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTN-----RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQST-TGDLTVLVERSL 455 (1051)
T ss_pred cCceeEEEecCCc-----eEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhc-ccceEEEEeecc
Confidence 3566776643322 357899999999999998 9999999999999999 889999999987 478887777754
No 93
>KOG1738|consensus
Probab=96.00 E-value=0.0077 Score=69.14 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=63.3
Q ss_pred CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666 (671)
Q Consensus 587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~ 666 (671)
..++|+.|....+. .++|..+.+++||+..+.|..||+|+.||+..|.++.+.-+|..|+.... -|.|+|..+.
T Consensus 212 ~eglg~~I~Ssydg-----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s-gi~l~lkKrp 285 (638)
T KOG1738|consen 212 SEGLGLYIDSSYDG-----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA-GIELTLKKRP 285 (638)
T ss_pred ccCCceEEeeecCC-----ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc-cceeeeeccC
Confidence 47899999877663 58999999999999999999999999999999999999999999998863 4555554444
Q ss_pred C
Q psy1156 667 K 667 (671)
Q Consensus 667 ~ 667 (671)
.
T Consensus 286 ~ 286 (638)
T KOG1738|consen 286 V 286 (638)
T ss_pred C
Confidence 3
No 94
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.99 E-value=0.0065 Score=67.95 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=41.6
Q ss_pred EEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEE-eCCc
Q psy1156 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLIS-RTSL 479 (671)
Q Consensus 422 Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~-R~~~ 479 (671)
|..|.|||+|+.+| |++||+|++|||+.+.++ .+....+. +..+.|+|. |++.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~--~e~l~L~V~~rdGe 55 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCA--DEELELEVLDANGE 55 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhc--CCcEEEEEEcCCCe
Confidence 67799999999999 999999999999999754 44544443 356788886 5553
No 95
>KOG3129|consensus
Probab=95.75 E-value=0.025 Score=57.41 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=43.5
Q ss_pred eeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCC-CHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156 607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL-THLEAISLFKTIKNGSISLHICRRL 666 (671)
Q Consensus 607 VfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~l-SheEAV~lLK~sg~~~VtL~V~Rr~ 666 (671)
++|.+|.|+|||+++| |+.||.|+.+..+.-.+. .+..+....+..-...+.++|.|..
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g 200 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG 200 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence 5899999999999999 999999999877655332 3445544445443356888887765
No 96
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.66 E-value=0.02 Score=64.84 Aligned_cols=69 Identities=22% Similarity=0.235 Sum_probs=50.9
Q ss_pred CCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEE
Q psy1156 396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLIS 475 (671)
Q Consensus 396 ~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~ 475 (671)
..+...||+.+.... ++..|..|.+||||.++| |.+||.|++|||..-.- .-. +++..+.+.+.
T Consensus 447 ~~~~~~LGl~v~~~~-------g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l-------~~~-~~~d~i~v~~~ 510 (558)
T COG3975 447 PREAYYLGLKVKSEG-------GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQL-------DRY-KVNDKIQVHVF 510 (558)
T ss_pred CCCCcccceEecccC-------CeeEEEecCCCChhHhcc-CCCccEEEEEcCccccc-------ccc-ccccceEEEEc
Confidence 333468888876432 568999999999999999 99999999999981110 011 36677888887
Q ss_pred eCCcc
Q psy1156 476 RTSLK 480 (671)
Q Consensus 476 R~~~~ 480 (671)
+.+..
T Consensus 511 ~~~~L 515 (558)
T COG3975 511 REGRL 515 (558)
T ss_pred cCCce
Confidence 76654
No 97
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.56 E-value=0.025 Score=64.08 Aligned_cols=42 Identities=33% Similarity=0.447 Sum_probs=36.5
Q ss_pred CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCe
Q psy1156 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636 (671)
Q Consensus 588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~ 636 (671)
..||+.+....+ +..|..|.++|||..+| |.+||.|++|||.
T Consensus 451 ~~LGl~v~~~~g------~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSEGG------HEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cccceEecccCC------eeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 478888754332 57999999999999999 9999999999999
No 98
>KOG1738|consensus
Probab=95.52 E-value=0.012 Score=67.75 Aligned_cols=79 Identities=24% Similarity=0.384 Sum_probs=65.4
Q ss_pred EEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeE
Q psy1156 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNM 470 (671)
Q Consensus 391 V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V 470 (671)
|++-...+.++||+.|...-+ ...+|+.+.+++||+..+.|+.||+|+.||++.|.++.+.-++..|.....-|
T Consensus 204 vqls~~kp~eglg~~I~Ssyd------g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi 277 (638)
T KOG1738|consen 204 VQLSTLSPSEGLGLYIDSSYD------GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGI 277 (638)
T ss_pred HHhccCCcccCCceEEeeecC------CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccc
Confidence 444434566899999987653 45899999999999999999999999999999999999999999999665556
Q ss_pred EEEEE
Q psy1156 471 DLLIS 475 (671)
Q Consensus 471 ~L~V~ 475 (671)
.++|.
T Consensus 278 ~l~lk 282 (638)
T KOG1738|consen 278 ELTLK 282 (638)
T ss_pred eeeee
Confidence 66654
No 99
>KOG3129|consensus
Probab=95.43 E-value=0.032 Score=56.59 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=46.1
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCC-HHHHHHHHh-cCCCeEEEEEEeCCcccc
Q psy1156 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT-MTQAKSIIS-SGPLNMDLLISRTSLKKS 482 (671)
Q Consensus 419 GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s-~~~av~~L~-~~g~~V~L~V~R~~~~~~ 482 (671)
-++|..|.|+|||+.+| |++||.|+.+..+.-.+.. ........+ ..+..+.++|.|.+....
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~ 204 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVV 204 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEE
Confidence 48999999999999999 9999999998775443332 333333333 456788999999877543
No 100
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.21 E-value=0.048 Score=57.93 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=36.5
Q ss_pred hHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC-CcEEEEEEeCCC
Q psy1156 619 AEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN-GSISLHICRRLK 667 (671)
Q Consensus 619 araGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~-~~VtL~V~Rr~~ 667 (671)
.+.| |++||++++|||.++. +.+++.+++++... ..+.|+|.|+..
T Consensus 221 ~~~G-Lq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq 267 (276)
T PRK09681 221 DASG-FKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGA 267 (276)
T ss_pred HHcC-CCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCE
Confidence 4578 9999999999999998 55766666665532 469999999864
No 101
>KOG0606|consensus
Probab=95.18 E-value=0.041 Score=66.90 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=62.1
Q ss_pred EEEEeCCCCCcccEEEeeecCCCCCC----cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156 391 VRVNRRDFNEELGIYIAKIKNSSEGN----IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG 466 (671)
Q Consensus 391 V~L~k~~~~~~LGfsI~gg~~~~~g~----~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~ 466 (671)
+.|.+. +..|||++..-.-.- |+ ..--.|..|.+|+||..+| |+.||.|+.|||+.|.+..|.+++.+|-+.
T Consensus 630 I~i~~~--~~~yGft~~airVy~-Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~ 705 (1205)
T KOG0606|consen 630 ITIHFS--GKKYGFTLRAIRVYM-GDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS 705 (1205)
T ss_pred eeeecc--ccccCceeeeEEEec-CCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc
Confidence 555553 488998765322110 11 0124788999999999999 999999999999999999999999999977
Q ss_pred CCeEEEEEE
Q psy1156 467 PLNMDLLIS 475 (671)
Q Consensus 467 g~~V~L~V~ 475 (671)
+..|.+.+.
T Consensus 706 gn~v~~~tt 714 (1205)
T KOG0606|consen 706 GNKVTLRTT 714 (1205)
T ss_pred CCeeEEEee
Confidence 877777663
No 102
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.71 E-value=0.085 Score=56.67 Aligned_cols=56 Identities=27% Similarity=0.552 Sum_probs=49.6
Q ss_pred ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeC
Q psy1156 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRR 665 (671)
Q Consensus 606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr 665 (671)
|||+..|..+++|. |.|+.||.|++|||+++. +.++.+..+++.+ .+.|++.+.|.
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence 89999999999998 779999999999999998 7899999988753 46799999874
No 103
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=93.95 E-value=0.18 Score=52.31 Aligned_cols=71 Identities=25% Similarity=0.315 Sum_probs=53.2
Q ss_pred EEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCc
Q psy1156 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGS 657 (671)
Q Consensus 579 V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~ 657 (671)
.-+.++. .-+|+.+..+++ ++.-...| |+.||..++||+.+++ +-+++..+|+... ...
T Consensus 198 tpv~r~e--ki~Gyr~~pgkd---------------~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s 257 (275)
T COG3031 198 TPVIRNE--KIEGYRFEPGKD---------------GSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPS 257 (275)
T ss_pred eeEeeCC--ceEEEEecCCCC---------------cchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcc
Confidence 3343443 678888877755 34455668 9999999999999998 6788888887764 346
Q ss_pred EEEEEEeCCCCC
Q psy1156 658 ISLHICRRLKSK 669 (671)
Q Consensus 658 VtL~V~Rr~~~~ 669 (671)
+.|+|.|+.+..
T Consensus 258 ~qlTv~R~G~rh 269 (275)
T COG3031 258 LQLTVIRRGKRH 269 (275)
T ss_pred eEEEEEecCccc
Confidence 999999998754
No 104
>KOG3532|consensus
Probab=93.82 E-value=0.14 Score=59.36 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=54.5
Q ss_pred CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEe
Q psy1156 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476 (671)
Q Consensus 399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R 476 (671)
..++|+....... ..|-|..|.+++||+++. +.+||++++|||.+|. +..++...++...+.+...+.|
T Consensus 385 s~~ig~vf~~~~~------~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTN------RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred cCceeEEEecCCc------eEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 4566766553321 678999999999999999 9999999999999996 4567888888766777666655
No 105
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=93.79 E-value=0.12 Score=54.98 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=38.2
Q ss_pred hhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccc
Q psy1156 430 LAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKS 482 (671)
Q Consensus 430 pA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~ 482 (671)
.-.++| |++||.+++|||.++.+. +++.+++. .....++|+|.|+++...
T Consensus 219 lF~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~~ 270 (276)
T PRK09681 219 LFDASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARHD 270 (276)
T ss_pred HHHHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEEE
Confidence 456689 999999999999999854 44444444 246789999999998543
No 106
>KOG1320|consensus
Probab=93.52 E-value=0.15 Score=57.75 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=48.7
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK 667 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~ 667 (671)
.+++|..|.|++++...| +.+||+|++|||++|.+ ..++..++..+- .+.|.++..|..+
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKN--LKHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeec--hHHHHHHHHhcCcCceEEEEEecCcc
Confidence 479999999999999988 99999999999999994 577888888764 2356666655544
No 107
>PF12812 PDZ_1: PDZ-like domain
Probab=92.24 E-value=0.38 Score=41.73 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=39.3
Q ss_pred ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654 (671)
Q Consensus 606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg 654 (671)
|+++.+...++++...| +..|-.|..|||+++. +.++.++.+++.+
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCC
Confidence 45556778888888766 9999999999999999 7899999999876
No 108
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=92.10 E-value=0.28 Score=52.86 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSL 479 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~ 479 (671)
.||||..|..++|+ .|.|+.||.|++|||+++.. .++....++ ..++.|++.+.|...
T Consensus 130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~ 189 (342)
T COG3480 130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNE 189 (342)
T ss_pred eeEEEEEccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccC
Confidence 58999999999998 47899999999999999974 456666665 678999999997443
No 109
>KOG4371|consensus
Probab=90.18 E-value=0.33 Score=58.87 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=65.0
Q ss_pred eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN 655 (671)
Q Consensus 576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~ 655 (671)
...|.+-+.+ +.||..++.... -+.|+...-.+.-.+-. |+.||.++.|||+.+.+.-|.+|+.+++..+
T Consensus 1148 ~i~~~~~r~~--~~l~~~~a~~~~------~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~- 1217 (1332)
T KOG4371|consen 1148 VIDVELDRNE--GSLGVQIASLSG------RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGG- 1217 (1332)
T ss_pred cccccCCCCC--CCCCceeccCcc------ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccC-
Confidence 3345555554 789988875533 25677766655555555 9999999999999999999999999999865
Q ss_pred CcEEEEEEeCCCCC
Q psy1156 656 GSISLHICRRLKSK 669 (671)
Q Consensus 656 ~~VtL~V~Rr~~~~ 669 (671)
+.|.|-|+|..+.+
T Consensus 1218 ~~~~~~~~r~~~~~ 1231 (1332)
T KOG4371|consen 1218 DRVVLGVQRPPPAY 1231 (1332)
T ss_pred ceEEEEeecCCccc
Confidence 88999999988654
No 110
>KOG1320|consensus
Probab=89.84 E-value=0.59 Score=53.14 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=45.5
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--CCeEEEEEEeCCc
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLISRTSL 479 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--g~~V~L~V~R~~~ 479 (671)
.+++|+.|.+++++...+ +.+||+|+.|||+.|.+..| +..++..+ ++.|.++..+..+
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecCcc
Confidence 579999999999999988 99999999999999987644 44555433 3466666655433
No 111
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=89.37 E-value=1.1 Score=46.84 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=50.4
Q ss_pred eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--c
Q psy1156 388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--S 465 (671)
Q Consensus 388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~ 465 (671)
++.+.+.+. ++-+|+.+..|. +++.-+..| |+.||+.+++|+.++.+ .+.+..+|+ .
T Consensus 195 Irltpv~r~--eki~Gyr~~pgk----------------d~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~ 253 (275)
T COG3031 195 IRLTPVIRN--EKIEGYRFEPGK----------------DGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLR 253 (275)
T ss_pred eEeeeEeeC--CceEEEEecCCC----------------Ccchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhh
Confidence 344444343 366777666443 355667789 99999999999999874 344555554 3
Q ss_pred CCCeEEEEEEeCCccc
Q psy1156 466 GPLNMDLLISRTSLKK 481 (671)
Q Consensus 466 ~g~~V~L~V~R~~~~~ 481 (671)
....+.|+|.|.|...
T Consensus 254 ~m~s~qlTv~R~G~rh 269 (275)
T COG3031 254 NMPSLQLTVIRRGKRH 269 (275)
T ss_pred cCcceEEEEEecCccc
Confidence 5678999999988754
No 112
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=85.35 E-value=2.5 Score=46.05 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=42.8
Q ss_pred eEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc---EEEEEEe
Q psy1156 608 FIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS---ISLHICR 664 (671)
Q Consensus 608 fIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~---VtL~V~R 664 (671)
++..|..+++|+.+| |++||+|+++|+..+. +..++...+....... +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 455799999999999 9999999999999998 5677666655543233 6777777
No 113
>KOG4407|consensus
Probab=71.28 E-value=1.8 Score=53.97 Aligned_cols=58 Identities=22% Similarity=0.403 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEe
Q psy1156 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R 476 (671)
.-|||..|++++||..+. |+.||.|+.||.+++.++....++.++++....++|.|..
T Consensus 143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P 200 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP 200 (1973)
T ss_pred hhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence 458999999999999999 9999999999999999999999999999777777777654
No 114
>PF12812 PDZ_1: PDZ-like domain
Probab=66.77 E-value=13 Score=32.30 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=34.5
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP 467 (671)
Q Consensus 420 I~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g 467 (671)
+++.....|+++..-| +..|-.|.+|||+++.+ .++.+.+++..+
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ip 76 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD--LDDFIKVVKKIP 76 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC--HHHHHHHHHhCC
Confidence 4445567888888766 99999999999999874 567777776543
No 115
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=63.37 E-value=14 Score=40.15 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=39.4
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCe---EEEEEEe
Q psy1156 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN---MDLLISR 476 (671)
Q Consensus 421 ~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~---V~L~V~R 476 (671)
++..+..+++|..+| +++||.|+++|+..+..+..-....... .+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLVAA-AGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHHHHHHHHhc-cCCcccceEEEEEe
Confidence 344789999999999 9999999999999998764433222222 2233 6777777
No 116
>KOG2921|consensus
Probab=59.27 E-value=11 Score=42.17 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=37.6
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT 652 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~ 652 (671)
.||.|.+|...||+.---+|.+||+|..+||.+|. +.++=++.|+.
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~--~v~dW~ecl~t 265 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVH--KVSDWLECLAT 265 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCcccC--CHHHHHHHHHh
Confidence 37888899999988764349999999999999998 66777777665
No 117
>KOG0792|consensus
Probab=51.25 E-value=14 Score=45.80 Aligned_cols=68 Identities=25% Similarity=0.413 Sum_probs=56.5
Q ss_pred CCcccEEEecCCCCC--CCCcceeEEEeC-------------CCCHHhHh-CCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy1156 587 KKGLGFTIVGGKDSP--RGAIGIFIKSIL-------------DNGQAAED-GRLKEGDEILAINGQVCHDLTHLEAISLF 650 (671)
Q Consensus 587 ~~~LGfsL~Gg~ds~--~g~~GVfIssV~-------------pgSpAara-GrLr~GDrILeVNG~sV~~lSheEAV~lL 650 (671)
.+.+||-+.|+.+.. ....++.++.|. |+++|+.. -++-.||+++.|||.++....|+.+|.+|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 378999999997754 234578888898 88888664 45899999999999999999999999999
Q ss_pred HhcC
Q psy1156 651 KTIK 654 (671)
Q Consensus 651 K~sg 654 (671)
++..
T Consensus 795 rs~r 798 (1144)
T KOG0792|consen 795 RSPR 798 (1144)
T ss_pred hhhh
Confidence 8763
No 118
>KOG3834|consensus
Probab=49.83 E-value=22 Score=40.16 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=43.8
Q ss_pred cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666 (671)
Q Consensus 605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~ 666 (671)
.|.-|..|.++++|.++|-.---|.|+.|||..+.. +-.....+|+..- +.|.|+|..-+
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~s-ekVkltv~n~k 74 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANS-EKVKLTVYNSK 74 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcc-cceEEEEEecc
Confidence 366788999999999999444567999999999863 3445555566553 45999886543
No 119
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=39.34 E-value=42 Score=33.92 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=31.5
Q ss_pred cccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEEC
Q psy1156 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634 (671)
Q Consensus 589 ~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVN 634 (671)
..|+.+....+ .+.|..|..||+|+++| +.-|++|.+|-
T Consensus 112 ~~GL~l~~e~~------~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEEGG------KVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred hCCCEEEeeCC------EEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 35777764322 47999999999999999 99999998873
No 120
>KOG0792|consensus
Probab=38.14 E-value=14 Score=45.79 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCcccEEEeeecCCCCCC-cCcEEEEEEc-------------CCChhhhcC-CCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156 399 NEELGIYIAKIKNSSEGN-IGGFVVAHIV-------------SGGLAEKEG-CLELGDEIISVNGQRLRGLTMTQAKSII 463 (671)
Q Consensus 399 ~~~LGfsI~gg~~~~~g~-~~GI~Vs~V~-------------pGspA~raG-~L~~GD~IlaVNG~~V~~~s~~~av~~L 463 (671)
.+.+||.+.|+.+...-. ..++.+++|. |+++|+..+ ++..||+++.|||..+....|++++.++
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 689999999877643111 1457788888 888887654 7889999999999999999999999999
Q ss_pred hcC
Q psy1156 464 SSG 466 (671)
Q Consensus 464 ~~~ 466 (671)
+.+
T Consensus 795 rs~ 797 (1144)
T KOG0792|consen 795 RSP 797 (1144)
T ss_pred hhh
Confidence 854
No 121
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=36.90 E-value=46 Score=33.65 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=30.4
Q ss_pred ccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEcc
Q psy1156 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446 (671)
Q Consensus 402 LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaV 446 (671)
.|+.+.... ..++|..|..||||+++| +..|.+|++|
T Consensus 113 ~GL~l~~e~-------~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 113 AGLTLMEEG-------GKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CCCEEEeeC-------CEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 477777422 458999999999999999 9999988765
No 122
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=25.82 E-value=1.1e+02 Score=30.86 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156 622 GRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654 (671)
Q Consensus 622 GrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg 654 (671)
|.+.+||+++-|+.+-.++-+..++++++++.+
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~G 149 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAG 149 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCC
Confidence 568899999999999999999999999999986
No 123
>PF15138 Syncollin: Syncollin
Probab=21.62 E-value=49 Score=30.60 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=17.5
Q ss_pred ccccccccCCCCCccccccC
Q psy1156 167 RRQRSFSFGALPGLDNLKDN 186 (671)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~ 186 (671)
-+-|+||-|+.|-|+||+.-
T Consensus 77 G~trkFsaG~~prL~e~r~G 96 (112)
T PF15138_consen 77 GKTRKFSAGTYPRLEEYRRG 96 (112)
T ss_pred CCcceecCCccccHHHHhcc
Confidence 56799999999999999754
No 124
>KOG2921|consensus
Probab=20.96 E-value=81 Score=35.57 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=33.0
Q ss_pred CcEEEEEEcCCChhhhc-CCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156 418 GGFVVAHIVSGGLAEKE-GCLELGDEIISVNGQRLRGLTMTQAKSIIS 464 (671)
Q Consensus 418 ~GI~Vs~V~pGspA~ra-G~L~~GD~IlaVNG~~V~~~s~~~av~~L~ 464 (671)
.|+.|..|..-||+--- | |.+||+|..+||.+|... ++....++
T Consensus 220 ~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~~v--~dW~ecl~ 264 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVHKV--SDWLECLA 264 (484)
T ss_pred ceEEEEeccccCCCcCccc-CCccceEEecCCcccCCH--HHHHHHHH
Confidence 57888888888875432 6 999999999999999753 44444444
Done!