RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1156
(671 letters)
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 127 bits (320), Expect = 1e-34
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 558 TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQ 617
S + + +A T T+ EK GLGF++ GGK S G + I I
Sbjct: 12 ASASAASDVSVESTAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAA 69
Query: 618 AAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
+ + ++ GDEIL + G LT EA ++ K + +G +++ I R+ K
Sbjct: 70 SEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSK 122
Score = 64.4 bits (157), Expect = 1e-12
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 358 IPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI 417
+P +S+D S S S + E + E + + LG + K S G+
Sbjct: 1 MPDLNSSTD--SAASASAASDVSVESTAEATVCTVTLEKM-SAGLGFSLEGGKGSLHGD- 56
Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISR 476
+ I G +E+ ++ GDEI+ + G ++GLT +A +II + + ++I R
Sbjct: 57 KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR 116
Query: 477 TSLKKSN 483
SL+
Sbjct: 117 KSLQSKE 123
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 124 bits (313), Expect = 8e-34
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 558 TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQ 617
+S ++ +I E+GP GLGF+IVGG SP G + I++K++ G
Sbjct: 8 SSGVDLGTENLYFQSMPQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGA 65
Query: 618 AAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
A+EDGRLK GD+I+A+NGQ +TH EA+++ K K G+++L +
Sbjct: 66 ASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSS 112
Score = 63.1 bits (154), Expect = 2e-12
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
+L +EN Q R + LG I S G++ V + + G A +
Sbjct: 11 VDLGTENLYFQSMPQCKSITLERG-PDGLGFSIVGGYGSPHGDLP-IYVKTVFAKGAASE 68
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
+G L+ GD+II+VNGQ L G+T +A +I+ + L++
Sbjct: 69 DGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 123 bits (311), Expect = 1e-33
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
I +KG +GLGF+I + G+ I++K+IL G A +DGRLK GD ++ +NG
Sbjct: 14 NIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71
Query: 638 CHDLTHLEAISLFKTIK-NGSISLHICRR 665
+ E +SL ++ K G++SL + R+
Sbjct: 72 LAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
Score = 58.9 bits (143), Expect = 6e-11
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-- 459
LG I + G+ V +I+ G A ++G L+ GD +I VNG L G + +
Sbjct: 24 LGFSITSRDVTIGGS-APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVS 82
Query: 460 --KSIISSGPLNMDLLISRTSLKKSNAENEYN 489
+S G ++ LL+ R +++ E N
Sbjct: 83 LLRSTKMEGTVS--LLVFRQ--EEAFHPREMN 110
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 123 bits (310), Expect = 2e-33
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 558 TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQ 617
S N I I +KG +GLGF+I + G+ I++K+IL G
Sbjct: 13 GSENLYFQGSYNTKKIGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGA 70
Query: 618 AAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRR 665
A +DGRLK GD ++ +NG + E +SL ++ K G++SL + R+
Sbjct: 71 AIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Score = 59.3 bits (144), Expect = 6e-11
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 360 AYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGG 419
++ + +H + S N++ G+ + ++ E LG I + G+
Sbjct: 4 SHHHHHHHHGSENLYFQGSYNTKK--IGKRLNIQLKKG-TEGLGFSITSRDVTIGGS-AP 59
Query: 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
V +I+ G A ++G L+ GD +I VNG L G + + S++ S + + LL+ R
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 121 bits (306), Expect = 6e-33
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
T+ +KGP LG +I GG SP G + IFI + G AA+ +L+ GD I+ I G
Sbjct: 25 LRTVEMKKGPTD-SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+TH +A++L K GSI + +
Sbjct: 84 TSTEGMTHTQAVNLLKNAS-GSIEMQVVAG 112
Score = 62.4 bits (152), Expect = 4e-12
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 367 YHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIV 426
+H +L +EN G V + ++ + LGI IA S G++ F+ A +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGLRTVEM-KKGPTDSLGISIAGGVGSPLGDVPIFI-AMMH 61
Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G+A + L +GD I+++ G G+T TQA +++ + ++++ +
Sbjct: 62 PTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 120 bits (304), Expect = 7e-33
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+ K LG ++ GG ++ GI++K+++ G A DGR+ +GD +LA+NG
Sbjct: 6 IFEVELAKNDN--SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
TH +A+ + + L + +
Sbjct: 64 VSLEGATHKQAVETLRNTG-QVVHLLLEKG 92
Score = 64.1 bits (157), Expect = 6e-13
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
+ LGI + N+S + G +V ++ G AE +G + GD +++VNG L G T Q
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYV-KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 73
Query: 459 AKSIISSGPLNMDLLISR 476
A + + + LL+ +
Sbjct: 74 AVETLRNTGQVVHLLLEK 91
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 120 bits (303), Expect = 2e-32
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
K P GLGF++VG + RG +GIF++ I + A DGRLKE D+ILAING
Sbjct: 21 VEVFELLKPPSG-GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 636 Q-VCHDLTHLEAISLFKTIKNGSISLHICRR 665
Q + +TH +AIS+ + K ++ L I R
Sbjct: 80 QALDQTITHQQAISILQKAK-DTVQLVIARG 109
Score = 63.5 bits (155), Expect = 2e-12
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
E +Q V + + LG + +++ + G +G FV I G +A +
Sbjct: 6 DEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFV-QEIQEGSVAHR 64
Query: 434 EGCLELGDEIISVNGQRL-RGLTMTQAKSIISSGPLNMDLLISRTSL 479
+G L+ D+I+++NGQ L + +T QA SI+ + L+I+R SL
Sbjct: 65 DGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSL 111
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 120 bits (302), Expect = 2e-32
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
T+ E+GP GLG ++ G + GA G++I+++L AA DGRL GD IL +NG
Sbjct: 10 FTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
L +L A+ L + + + +
Sbjct: 68 SLLGLGYLRAVDLIRHGGK-KMRFLVAKS 95
Score = 61.2 bits (149), Expect = 9e-12
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
LG+ + ++ G G + ++ G A +G L LGD I+ VNG L GL +
Sbjct: 18 PSGLGMGLIDGMHTHLGA-PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76
Query: 459 AKSIISSGPLNMDLLISR 476
A +I G M L+++
Sbjct: 77 AVDLIRHGGKKMRFLVAK 94
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 119 bits (299), Expect = 6e-32
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ +K PG+ LG T+ GG + I++ S+ G + DGR+K GD +L ++G
Sbjct: 27 VVNIQKDPGE-SLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVE 85
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRR 665
+++ EA++L K SI L
Sbjct: 86 LTEVSRSEAVALLKRTS-SSIVLKALEV 112
Score = 64.7 bits (158), Expect = 6e-13
Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 368 HSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVS 427
H +L +EN + +V + + E LG+ +A + E ++ +V +
Sbjct: 5 HHHSSGVDLGTENLYFQSMHEKVVNIQKDP-GESLGMTVAGGASHREWDLPIYV-ISVEP 62
Query: 428 GGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GG+ ++G ++ GD +++V+G L ++ ++A +++ ++ L
Sbjct: 63 GGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALE 111
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 117 bits (296), Expect = 2e-31
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
R P F K +G GFT+VGG + + IKS++ +G AA DG+++
Sbjct: 10 RNPSELKGKFIHTKLRKSS--RGFGFTVVGGDEPDEF---LQIKSLVLDGPAALDGKMET 64
Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNG-SISLHICRR 665
GD I+++N TH + + +F++I G S+ L +CR
Sbjct: 65 GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104
Score = 54.8 bits (132), Expect = 3e-09
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
G + E + +V G A +G +E GD I+SVN + G T Q
Sbjct: 31 FGFTVVGGDEPDEF----LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVK 86
Query: 462 IISSGPLN--MDLLISR 476
I S P+ +DL + R
Sbjct: 87 IFQSIPIGASVDLELCR 103
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 116 bits (292), Expect = 4e-31
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
P T+ +K G+G +IV K + + +GI++KS++ G A DGRL
Sbjct: 2 PLGSDHKEPEIITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLA 58
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
GD++L+++G+ L+ A L ++L + ++
Sbjct: 59 AGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQ 97
Score = 63.1 bits (154), Expect = 2e-12
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
D +E + + ++ +G+ I K + + +G +V +V GG A+ +G L
Sbjct: 3 LGSDHKEPEIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYV-KSVVKGGAADVDGRLAA 59
Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GD+++SV+G+ L GL+ +A +++ + L +++
Sbjct: 60 GDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 115 bits (291), Expect = 5e-31
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ K KGLGF+I+ +D I I+S++ +G A G L GD ++++N
Sbjct: 18 IVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
+ + EA+ + K + G + L IC S
Sbjct: 76 CLDNTSLAEAVEILKAVPPGLVHLGICSGPSS 107
Score = 62.0 bits (151), Expect = 4e-12
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
S + E + + V + LG I ++ + V+ +V+ G+AE+ G
Sbjct: 3 SGSSGELALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGG 62
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISR 476
L GD ++SVN L ++ +A I+ + P + L I
Sbjct: 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 115 bits (290), Expect = 7e-31
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGA--IGIFIKSILDNGQAAEDGRLKEGDEILAI 633
+++ + LG +I G +D GI++KS++ AA DGR++ D+IL +
Sbjct: 13 LYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666
+ + + + + + + L + RRL
Sbjct: 73 DDVNVQGMAQSDVVEVLRNAG-NPVRLLLIRRL 104
Score = 61.6 bits (150), Expect = 6e-12
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 378 SENSEDSQEGQTM-VRVNRRDFNEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEG 435
S D+ V + R LGI I+ S+ G G V ++ G A +G
Sbjct: 2 SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61
Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
+E D+I+ V+ ++G+ + ++ + + LL+ R
Sbjct: 62 RIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 116 bits (292), Expect = 7e-31
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
I E+ GLGF++V + G + IF+K + A D RLKE D+ILAIN
Sbjct: 26 IEYIDIERPS-TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINH 84
Query: 636 Q-VCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ +++H +AI+L + GS+ L + R
Sbjct: 85 TPLDQNISHQQAIALLQQTT-GSLRLIVARE 114
Score = 59.4 bits (144), Expect = 6e-11
Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 365 SDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAH 424
S S + + +S + +Q Q R LG + +++ + G + FV
Sbjct: 2 SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFV-KD 60
Query: 425 IVSGGLAEKEGCLELGDEIISVNGQRL-RGLTMTQAKSIISSGPLNMDLLISRTSLKKSN 483
+ G +A+++ L+ D+I+++N L + ++ QA +++ ++ L+++R + +
Sbjct: 61 VQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKS 120
Query: 484 A 484
+
Sbjct: 121 S 121
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 115 bits (290), Expect = 1e-30
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
R TF + +K G GFTI+GG + + +KS++ +G AA+DG+++
Sbjct: 11 RDASQLKGTFLSTTLKKSN--MGFGFTIIGGDEPD---EFLQVKSVIPDGPAAQDGKMET 65
Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
GD I+ IN TH + + LF+++ G ++L +CR
Sbjct: 66 GDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105
Score = 54.7 bits (132), Expect = 2e-09
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
G I E V ++ G A ++G +E GD I+ +N + G T
Sbjct: 32 FGFTIIGGDEPDEF----LQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87
Query: 462 IISSGPLN--MDLLISR 476
+ S P+ ++L++ R
Sbjct: 88 LFQSVPIGQSVNLVLCR 104
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 115 bits (290), Expect = 1e-30
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+ +R H I EK GLG ++ G KD R + IF+ I G AA DGR+
Sbjct: 15 IRQRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRM 70
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ GDE+L IN Q+ + +H A ++ KT + L R
Sbjct: 71 RIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRN 110
Score = 62.5 bits (152), Expect = 4e-12
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-----------NIGGFVVAHIVSGG 429
S S + T ++ +R + ++I +++ G + V I G
Sbjct: 3 SGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEG 62
Query: 430 LAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
A +G + +GDE++ +N Q L G + A +II + P + L+ R
Sbjct: 63 PAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIR 109
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 113 bits (285), Expect = 3e-30
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
I +GP GLGF IVGG D GI++ I +NG AA DGRL+EGD+IL++NG
Sbjct: 10 EINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
Q +L H +A+ LF+ ++SL + RL+S
Sbjct: 68 QDLKNLLHQDAVDLFRNAGY-AVSLRVQHRLES 99
Score = 55.0 bits (133), Expect = 1e-09
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
S D + + + R LG I N G V+ I G A +G L+
Sbjct: 1 SMDYLVTEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 58
Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GD+I+SVNGQ L+ L A + + + L +
Sbjct: 59 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 113 bits (285), Expect = 4e-30
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 571 SAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA------IGIFIKSILDNGQAAEDGRL 624
S+ + +K PG+ LG +I GG G GIFI + G A DGRL
Sbjct: 5 SSGPGLRELCIQKAPGE-RLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
+ G +L +N Q LTH EA+ L +++ + ++++ +C +S
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGD-TLTVLVCDGFES 106
Score = 63.9 bits (156), Expect = 1e-12
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI-----GGFVVAHIVSGGLAEKEG 435
S S G + + + E LGI I GN G ++ + G A ++G
Sbjct: 3 SGSSGPGLRELCIQKAP-GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDG 61
Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L +G ++ VN Q L GLT +A ++ S + +L+
Sbjct: 62 RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 113 bits (284), Expect = 4e-30
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
T + KGP KGLGF+I GG + G I+I I++ G A +DGRL+ GD +LA
Sbjct: 3 TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+N D+ H EA++ K + L + +
Sbjct: 61 VNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKP 92
Score = 56.9 bits (138), Expect = 2e-10
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 402 LGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
LG IA I N + I+ GG A+K+G L++GD +++VN L+ + +A
Sbjct: 16 LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75
Query: 461 SIISSGPLNMDLLISR 476
+ + + + L +++
Sbjct: 76 ASLKNTSDMVYLKVAK 91
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 113 bits (284), Expect = 4e-30
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 572 AICTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDE 629
++ + IV E+G GLGF+I GG D+P GIFI I+ G AA DGRL D
Sbjct: 1 SMFKYEEIVLERGNS--GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 58
Query: 630 ILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+L +N ++ H A+ K + L + RR
Sbjct: 59 VLRVNEVDVSEVVHSRAVEALKEAG-PVVRLVVRRR 93
Score = 56.2 bits (136), Expect = 5e-10
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 399 NEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
N LG IA I N + G + I+ GG A +G L + D ++ VN + + +
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 458 QAKSIISSGPLNMDLLISR 476
+A + + L++ R
Sbjct: 74 RAVEALKEAGPVVRLVVRR 92
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 112 bits (283), Expect = 8e-30
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
T I KGP KGLGF+I GG + G I++ I+D G A +DGRL+ GD +L
Sbjct: 24 TVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+N ++TH EA+++ K + L + +
Sbjct: 82 VNNYSLEEVTHEEAVAILKNTS-EVVYLKVGKP 113
Score = 57.4 bits (139), Expect = 2e-10
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 368 HSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIV 426
H +L +EN +++ + + LG IA + V I+
Sbjct: 5 HHHSSGVDLGTENLYFQSMTVVEIKLFKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKII 62
Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GG A+K+G L++GD ++ VN L +T +A +I+ + + L + +
Sbjct: 63 DGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 112 bits (282), Expect = 9e-30
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
I KGP KGLGF+I GG + G I++ I++ G A +DG+L+ GD++LA+N
Sbjct: 5 MEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
++TH EA++ K + L + +
Sbjct: 63 SVSLEEVTHEEAVTALKNTS-DFVYLKVAKP 92
Score = 58.1 bits (141), Expect = 1e-10
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 402 LGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
LG IA + N V I+ GG A K+G L++GD++++VN L +T +A
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAV 75
Query: 461 SIISSGPLNMDLLISRTSLKKSNAENEYNESH 492
+ + + + L +++ ++ H
Sbjct: 76 TALKNTSDFVYLKVAKP--TSMYISRHHHHHH 105
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 111 bits (280), Expect = 9e-30
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
+ H K +G GFT+VGG + + IKS++ +G AA DG+++ GD I+++N
Sbjct: 1 SIH-TKLRKSS--RGFGFTVVGGDEPDEF---LQIKSLVLDGPAALDGKMETGDVIVSVN 54
Query: 635 GQVCHDLTHLEAISLFKTIKNGS-ISLHICR 664
TH + + +F++I G+ + L +CR
Sbjct: 55 DTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
Score = 56.5 bits (137), Expect = 2e-10
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
G + E + +V G A +G +E GD I+SVN + G T Q
Sbjct: 13 FGFTVVGGDEPDEF----LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVK 68
Query: 462 IISSGPLN--MDLLISR 476
I S P+ +DL + R
Sbjct: 69 IFQSIPIGASVDLELCR 85
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 112 bits (282), Expect = 1e-29
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGR 623
+ T I +GP GLGF IVGG D GI++ I +NG AA DGR
Sbjct: 8 MNGRVDYLVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGR 65
Query: 624 LKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
L+EGD+IL++NGQ +L H +A+ LF+ ++SL + RL+ +
Sbjct: 66 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRLQVQNG 112
Score = 54.8 bits (132), Expect = 2e-09
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAK-IKNSSEGNIGGFVVAHIVSGGLAEKEG 435
S N R LG I N G V+ I G A +G
Sbjct: 6 SGMNGRVDYLVTEEEINLTRG-PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDG 64
Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L+ GD+I+SVNGQ L+ L A + + + L +
Sbjct: 65 RLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 105
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 110 bits (277), Expect = 4e-29
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
+ EK GLG +I+G G D+ +GIF+K++ + G A DGR++ D+I+ +
Sbjct: 11 FPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+G +T A ++ + K G++ I R
Sbjct: 69 DGISLVGVTQNFAATVLRNTK-GNVRFVIGRE 99
Score = 58.9 bits (143), Expect = 6e-11
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLE 438
S S + +D + LGI I + ++ + G V + GG A+++G ++
Sbjct: 2 SSGSSGLELFPVELEKD-EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60
Query: 439 LGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
+ D+I+ V+G L G+T A +++ + N+ +I R
Sbjct: 61 VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 111 bits (279), Expect = 4e-29
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 563 CTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAED 621
C S T + + G GLG ++ G K G +GIFIKSI+ G A +D
Sbjct: 14 CYALSLESSEQLTLEIPLNDSGS--AGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKD 71
Query: 622 GRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN------GSISLHICRR 665
GRL+ D+++A+NG+ ++ EA+ + + G I L I RR
Sbjct: 72 GRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121
Score = 62.5 bits (152), Expect = 5e-12
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 365 SDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAH 424
S S ++ S +S E T+ + LG+ + K+ G G +
Sbjct: 2 SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61
Query: 425 IVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
I+ GG A K+G L + D++I+VNG+ L G + +A +
Sbjct: 62 IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 110 bits (276), Expect = 5e-29
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
++ +G G G T+ GG+D G + ++ +L +G A GRL+ GD +L ING+
Sbjct: 13 FSVELVRGYA--GFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE 69
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
LTH +A+ + + L I R L
Sbjct: 70 STQGLTHAQAVERIRAGG-PQLHLVIRRPLSG 100
Score = 56.9 bits (138), Expect = 2e-10
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT 455
RD + + + + + G A++ G LE+GD ++ +NG+ +GLT
Sbjct: 32 RDVAGDTPLAVRGL----------------LKDGPAQRCGRLEVGDLVLHINGESTQGLT 75
Query: 456 MTQAKSIISSGPLNMDLLISR 476
QA I +G + L+I R
Sbjct: 76 HAQAVERIRAGGPQLHLVIRR 96
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 110 bits (276), Expect = 7e-29
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
T+ LG +IVG + RG GI+I SI+ G A DGR++ GD +L +N
Sbjct: 8 TVTLNMEKYN-FLGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 638 CHDLTHLEAISLFKTI--KNGSISLHICRR 665
++++ +A+ + + I K G I L + +
Sbjct: 66 FENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
Score = 55.5 bits (134), Expect = 1e-09
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
+ LGI I N GG + I+ GG +G +E GD ++ VN +
Sbjct: 12 NMEKYNFLGISIVGQSNERGD--GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENM 69
Query: 455 TMTQAKSI---ISSGPLNMDLLISRT 477
+ A + I P + L ++++
Sbjct: 70 SNDDAVRVLRDIVHKPGPIVLTVAKS 95
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 109 bits (273), Expect = 2e-28
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDS-----PRGAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
T+V + G LGF I+GG+ S + GIF+ I+D+G AA++G L+ D I+
Sbjct: 10 LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
+NG+ TH +A+ FKT K I + + RR +
Sbjct: 68 EVNGRDLSRATHDQAVEAFKTAKE-PIVVQVLRRTSGPSS 106
Score = 58.2 bits (141), Expect = 9e-11
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 383 DSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG----GFVVAHIVSGGLAEKEGCLE 438
G+++ V RD + LG I + S + + G G V+ IV G A KEG L+
Sbjct: 3 SGSSGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61
Query: 439 LGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNA 484
+ D II VNG+ L T QA + + + + R + S+
Sbjct: 62 IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSSG 107
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 109 bits (273), Expect = 2e-28
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGK---DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
+ EK +GLG +I+G D +GIF+K++ + G A DGR++ D ++
Sbjct: 5 LFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
++G +T A S+ + K G + I R ++
Sbjct: 63 VDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRERPGEQ 99
Score = 60.9 bits (148), Expect = 1e-11
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 402 LGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
LGI I + ++ + G V + GG A ++G +++ D ++ V+G L G+T + A
Sbjct: 17 LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFA 76
Query: 460 KSIISSGPLNMDLLISR-TSLKKSNAENEYNESHSRE 495
S++ + + +I R ++S ++ +E
Sbjct: 77 ASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLEQE 113
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 108 bits (271), Expect = 2e-28
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ K + LG +V D P G+FI +L+ G AA+DGRL D +LAING
Sbjct: 5 LQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
T A + + ++L I R
Sbjct: 61 DLKYGTPELAAQIIQASG-ERVNLTIARP 88
Score = 63.9 bits (156), Expect = 7e-13
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V +++RD E+LGI + + + G + ++ GGLA ++G L D ++++NG
Sbjct: 7 VALHKRDSGEQLGIKLVRRTDEP-----GVFILDLLEGGLAAQDGRLSSNDRVLAINGHD 61
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
L+ T A II + ++L I+R
Sbjct: 62 LKYGTPELAAQIIQASGERVNLTIAR 87
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 108 bits (272), Expect = 2e-28
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ + G GF I+GG + + I I +++ G A DGRL GDE++ ++G
Sbjct: 12 DVHLRRMES--GFGFRILGGDEPGQP---ILIGAVIAMGSADRDGRLHPGDELVYVDGIP 66
Query: 638 CHDLTHLEAISLFK-TIKNGSISLHICRRLKSKKT 671
TH I L +NG ++L + R++ S +
Sbjct: 67 VAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPS 101
Score = 56.9 bits (138), Expect = 2e-10
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
S S + + RR G I + ++ +++ G A+++G L G
Sbjct: 2 SSGSSGYKELDVHLRRM-ESGFGFRILGGDEPGQP----ILIGAVIAMGSADRDGRLHPG 56
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
DE++ V+G + G T ++ N ++L + R
Sbjct: 57 DELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 108 bits (271), Expect = 3e-28
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 564 TLPRRPRSAICTFHTIVFEKGPGKKGLGFTIV-----GGKDSPRGAIGIFIKSILDNGQA 618
+ P +P + K LG ++ GG ++ GI++K+++ G A
Sbjct: 2 SSPPKP----GDIFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAA 55
Query: 619 AEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
DGR+ +GD +LA+NG TH +A+ + + L + +
Sbjct: 56 ESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKG 101
Score = 59.7 bits (145), Expect = 3e-11
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 399 NEELGIYIAKIKNS----SEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
+ LGI + + + + GG V ++ G AE +G + GD +++VNG L G
Sbjct: 19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 78
Query: 455 TMTQAKSIISSGPLNMDLLISR 476
T QA + + + LL+ +
Sbjct: 79 THKQAVETLRNTGQVVHLLLEK 100
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 107 bits (270), Expect = 3e-28
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
TI +K PGK GLG +IVG ++ G+F+ I+ G A DGRL +GD+IL +NG+
Sbjct: 6 LTIGLQKKPGK-GLGLSIVGKRNDT----GVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ T +L K G+++L + R
Sbjct: 61 DVRNATQEAVAALLKC-SLGTVTLEVGRI 88
Score = 60.7 bits (148), Expect = 7e-12
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
+ + ++ + LG+ I +N + G V+ IV GG+A+ +G L GD+I+ VNG+
Sbjct: 8 IGLQKKP-GKGLGLSIVGKRNDT-----GVFVSDIVKGGIADADGRLMQGDQILMVNGED 61
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
+R T +++ + L + R
Sbjct: 62 VRNATQEAVAALLKCSLGTVTLEVGR 87
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 108 bits (271), Expect = 3e-28
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
TI KG GLG +IVGG D+ G I I + + G A +DGRL GD+IL +NG
Sbjct: 7 TIEISKGRT--GLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGID 62
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRR 665
TH EAI++ + + L + R
Sbjct: 63 LRKATHDEAINVLRQTP-QRVRLTLYRD 89
Score = 61.2 bits (149), Expect = 7e-12
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
LG+ I ++ G I ++ + G A K+G L GD+I+ VNG LR T +
Sbjct: 14 RTGLGLSIVGGSDTLLGAI---IIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDE 70
Query: 459 AKSIISSGPLNMDLLISR 476
A +++ P + L + R
Sbjct: 71 AINVLRQTPQRVRLTLYR 88
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 107 bits (270), Expect = 3e-28
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+ K +GLG TI G + GIF+KSI + DGR++ GD+I+A++G
Sbjct: 6 FDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
T+ +A+ + + ++ L + RR
Sbjct: 64 TNLQGFTNQQAVEVLRHTGQ-TVLLTLMRR 92
Score = 65.0 bits (159), Expect = 3e-13
Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LGI IA + G V I E +G +++GD+II+V+G L+G T QA
Sbjct: 17 LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVE 76
Query: 462 IISSGPLNMDLLISR 476
++ + L + R
Sbjct: 77 VLRHTGQTVLLTLMR 91
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 107 bits (270), Expect = 4e-28
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
H + GLGF+I GGK S G GIF+ I + G A G L+ GD +L+I
Sbjct: 9 HVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
NG + H A+SL +I+L + R S
Sbjct: 67 NGVDVTEARHDHAVSLLTAASP-TIALLLEREAGS 100
Score = 59.7 bits (145), Expect = 3e-11
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 384 SQEGQTMVRVNRRDFNEELGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGD 441
S V R LG IA K G V+ I GG A + G L++GD
Sbjct: 3 SGSSGRHVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61
Query: 442 EIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
++S+NG + A S++++ + LL+ R
Sbjct: 62 RVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 108 bits (271), Expect = 4e-28
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
H + K G GLGF++ GG D I + + NG A+++G +++G+E+L+ING
Sbjct: 16 IHVTILHKEEGA-GLGFSLAGGADLENK--VITVHRVFPNGLASQEGTIQKGNEVLSING 72
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
+ TH +A+++ + + ++ + R+L +
Sbjct: 73 KSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAM 108
Score = 67.1 bits (164), Expect = 1e-13
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
S SS + +G + +++ + LG + ++ V + GLA +
Sbjct: 2 SSGSSGATLKQLDGIHVTILHKEE-GAGLGF---SLAGGADLENKVITVHRVFPNGLASQ 57
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
EG ++ G+E++S+NG+ L+G T A +I+ +I
Sbjct: 58 EGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT 100
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 107 bits (269), Expect = 4e-28
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+ T+ EKG G GF+I GG++ + +++ + ++G A +GR++ GD+I+ ING
Sbjct: 12 YFTVDMEKGAK--GFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEING 66
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
+ D+TH AI L K+ + L + R S
Sbjct: 67 ESTRDMTHARAIELIKSGGR-RVRLLLKRGTGS 98
Score = 57.7 bits (140), Expect = 1e-10
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
G I + V + G A + G + +GD+II +NG+ R +T +A
Sbjct: 24 FGFSIRGGREYKMD----LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79
Query: 462 IISSGPLNMDLLISR 476
+I SG + LL+ R
Sbjct: 80 LIKSGGRRVRLLLKR 94
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 106 bits (268), Expect = 5e-28
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
I + G GF I+GG + I+I I+ G A DGRL+ GDE+++++G
Sbjct: 4 QDIFLWRKET--GFGFRILGGNEPGEP---IYIGHIVPLGAADTDGRLRSGDELISVDGT 58
Query: 637 VCHDLTHLEAISLFKTI-KNGSISLHICRR 665
+H + L + K G ++L + +
Sbjct: 59 PVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88
Score = 56.5 bits (137), Expect = 2e-10
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
+ HIV G A+ +G L GDE+ISV+G + G + ++ ++L + +
Sbjct: 28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQ 87
Query: 477 TSL 479
T L
Sbjct: 88 TRL 90
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 107 bits (269), Expect = 8e-28
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
LG +VGGK + G + FI + A G L+ GDE+L NG++ T
Sbjct: 45 DSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFE 104
Query: 645 EAISLFKTIKN-GSISLHICRRLKS 668
E ++ K + L + R S
Sbjct: 105 EVYNIILESKPEPQVELVVSRSGPS 129
Score = 65.2 bits (159), Expect = 6e-13
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 363 NSSDYHSMMEISELSSENSEDSQEGQTMVRVNR--------RDFNEELGIYIAKIKNSSE 414
+ S HS + ++ + S+D + +N+ RD LG+ + K +
Sbjct: 3 SGSSGHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTES 62
Query: 415 GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII--SSGPLNMDL 472
G + F+ + G LA+ G L GDE++ NG+ L+G T + +II S ++L
Sbjct: 63 GRLCAFI-TKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 121
Query: 473 LISR 476
++SR
Sbjct: 122 VVSR 125
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 106 bits (266), Expect = 2e-27
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 580 VFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ GLG IVGGK+ P G IG +I IL G A + G+L EG ++L NG
Sbjct: 22 SKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP 81
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
T+ E S+ G + + L
Sbjct: 82 LTSKTYEEVQSIISQQS-GEAEICVRLDLNM 111
Score = 62.1 bits (151), Expect = 5e-12
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 402 LGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
LGI I K G IG ++ A I+ GG AE+ G L G +++ NG L T +
Sbjct: 32 LGIRIVGGKEIPGHSGEIGAYI-AKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV 90
Query: 460 KSIISSGPLNMDLLISR 476
+SIIS ++ +
Sbjct: 91 QSIISQQSGEAEICVRL 107
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 105 bits (265), Expect = 2e-27
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
++ GLG I+GG + G ++I ++ G +DGRLK GD++++IN +
Sbjct: 17 RVITVTKE--TGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVSINKES 73
Query: 638 CHDLTHLEAISLFKTIKN---GSISLHICRRLKS 668
++ EA S+ K + R S
Sbjct: 74 MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGPS 107
Score = 59.7 bits (145), Expect = 3e-11
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
SS +S + RV LG+ I N +EG + ++ GG K+G
Sbjct: 2 SSGSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGP--LVYIHEVIPGGDCYKDGR 59
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSII------SSGPLNMDLLISRTS 478
L+ GD+++S+N + + G++ +AKSII S P + + S S
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGPS 107
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 105 bits (263), Expect = 4e-27
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ + + L + GG DSP G + + ++ + G A G + +GDEI+AING++
Sbjct: 18 DVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAINGKI 75
Query: 638 CHDLTHLEAISLFKTIKNGS---ISLHICRR 665
D T EA + + N I L +
Sbjct: 76 VTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106
Score = 73.6 bits (181), Expect = 5e-16
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
SE ++ Q VR+ R L + + +S G + VV+ + GG AE+
Sbjct: 2 SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKV---VVSAVYEGGAAER 58
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN----MDLLISRTSLKKSNAE 485
G + GDEI+++NG+ + T+ +A++ + +DL+++ K+ + E
Sbjct: 59 HGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDE 114
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 104 bits (261), Expect = 5e-27
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
PR+++ F + K GK LG ++ + G I ++ D +L+ GD
Sbjct: 3 PRNSLEKF-NVDLMKKAGK-ELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGD 54
Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
I NG L + +LFK NG +S+ + R
Sbjct: 55 IITKFNGDALEGLPFQVSYALFKGA-NGKVSMEVTRP 90
Score = 61.2 bits (149), Expect = 7e-12
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V + ++ +ELG+ ++ N G +A ++ G E + L+ GD I NG
Sbjct: 12 VDLMKKA-GKELGLSLS-------PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
L GL + ++ + + ++R
Sbjct: 64 LEGLPFQVSYALFKGANGKVSMEVTR 89
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 104 bits (261), Expect = 5e-27
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGA------IGIFIKSILDNGQAAEDGRLKEGDEI 630
+ + P K LG +IVGG+ GIFIK +L++ A ++G LK GD I
Sbjct: 6 RRVELWREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
+ ++G D +H +A+ + N + + + ++
Sbjct: 65 VEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSIISTR 102
Score = 60.4 bits (147), Expect = 2e-11
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 395 RRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
R+ ++ LGI I + S+ + G + H++ A K G L+ GD I+ V+G
Sbjct: 11 WREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM 70
Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
LR + QA I + ++
Sbjct: 71 DLRDASHEQAVEAIRKAGNPVVFMVQS 97
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 104 bits (262), Expect = 5e-27
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
I KG GLG +IVGGKD+P I I + + G AA DGRL GD+IL +NG
Sbjct: 19 MIIEISKGR--SGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ +H EAI+ + + L + R
Sbjct: 75 DLRNSSHEEAITALRQTP-QKVRLVVYRD 102
Score = 64.3 bits (157), Expect = 1e-12
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
S + GQ M+ + LG+ I K++ I V+ + G A ++G
Sbjct: 6 SGPATCPIVPGQEMIIEISKG-RSGLGLSIVGGKDTPLNAI---VIHEVYEEGAAARDGR 61
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L GD+I+ VNG LR + +A + + P + L++ R
Sbjct: 62 LWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYR 101
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 103 bits (260), Expect = 1e-26
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
F+T+ E+G G GF++ GG++ + +++ + ++G A G+++ GDEIL ING
Sbjct: 25 FYTVELERGAK--GFGFSLRGGREYN---MDLYVLRLAEDGPAERSGKMRIGDEILEING 79
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ ++ H AI L K + L + R
Sbjct: 80 ETTKNMKHSRAIELIKNGGR-RVRLFLKRG 108
Score = 58.9 bits (143), Expect = 6e-11
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
+L +EN V + R + G ++ E N+ V + G AE+
Sbjct: 11 VDLGTENLYFQSMDFYTVELERGA--KGFGF---SLRGGREYNMD-LYVLRLAEDGPAER 64
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G + +GDEI+ +NG+ + + ++A +I +G + L + R
Sbjct: 65 SGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKR 107
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 103 bits (258), Expect = 1e-26
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
H + +K K G IV G+ GIFIK I+ + A GRLK GD IL++
Sbjct: 7 HMVTLDKTGKK-SFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
NG+ + T I L K I L I
Sbjct: 66 NGKDVRNSTEQAVIDLIKEADF-KIELEIQT 95
Score = 64.6 bits (158), Expect = 4e-13
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 386 EGQTMVRVN-RRDFNEELGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDE 442
G+ + V + + GI I ++K+S G + IV A G L++GD
Sbjct: 2 AGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDR 61
Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
I+S+NG+ +R T +I ++L I
Sbjct: 62 ILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 104 bits (260), Expect = 1e-26
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+ + + LG T+ D IGI+I I N AA+DGR++EGD I+ ING
Sbjct: 20 LEEVDLYRMNSQDKLGLTVCYRTDDEDD-IGIYISEIDPNSIAAKDGRIREGDRIIQING 78
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ A++L + +N + SL I R
Sbjct: 79 IEVQNREE--AVALLTSEENKNFSLLIARP 106
Score = 57.2 bits (138), Expect = 3e-10
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
++ E + E + V + R + ++LG+ + + E +IG ++ + I +A K
Sbjct: 7 GDIHQEMDREELELEE-VDLYRMNSQDKLGLTVC-YRTDDEDDIGIYI-SEIDPNSIAAK 63
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRTSLKKSNAENEYNESH 492
+G + GD II +NG ++ +A ++++S N LLI+R L+ + +
Sbjct: 64 DGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDSGP 121
Query: 493 S 493
S
Sbjct: 122 S 122
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 103 bits (259), Expect = 1e-26
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDG 622
I +T+ +K + G G + GG+D+P G I I +L G A DG
Sbjct: 5 SSGMEEVIWEQYTVTLQKDSKR-GFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DG 61
Query: 623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
L+E D ++ +NG D+ H A+ + ++ + R K +
Sbjct: 62 LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK-IAAIVVKRPRKVQVA 109
Score = 54.0 bits (130), Expect = 4e-09
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKE 434
S E+ Q V + + GI ++ +++ G V++ ++ GG A+
Sbjct: 4 GSSGMEEVIWEQYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-- 60
Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G L+ D ++ VNG + + + A + +++ R
Sbjct: 61 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 103 bits (258), Expect = 2e-26
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDS------PRGAIGIFIKSILDNGQAAEDGRLKEGDEI 630
+ + P K LG +IVGG+ GIFIK +L++ A ++G LK GD I
Sbjct: 26 RRVELWREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 84
Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
+ ++G D +H +A+ + N + + + ++
Sbjct: 85 VEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSIISTR 122
Score = 60.9 bits (148), Expect = 2e-11
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 368 HSMMEISELSSENSEDS--QEGQTMVRVNRRDFNEELGIYIA-----KIKNSSEGNIGGF 420
H S +E+ Q Q R+ ++ LGI I + S+ + G
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGI 61
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
+ H++ A K G L+ GD I+ V+G LR + QA I + ++
Sbjct: 62 FIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 102 bits (257), Expect = 2e-26
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ GLGF IVGGK S G+ +++I+ G A DGRL+ GD IL I G
Sbjct: 17 EEVELINDG--SGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGGT 69
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
+T + + + S+ + + R
Sbjct: 70 NVQGMTSEQVAQVLRNCG-NSVRMLVARD 97
Score = 59.3 bits (144), Expect = 5e-11
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
S E G D LG I G G VV IV GGLA+++G
Sbjct: 4 GSSGPETVCWGHVEEVELIND-GSGLGFGIVG------GKTSGVVVRTIVPGGLADRDGR 56
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L+ GD I+ + G ++G+T Q ++ + ++ +L++R
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVAR 96
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 102 bits (257), Expect = 4e-26
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKE 626
S++ + + + G+ LG IVG + A GI++KS++ A +G ++
Sbjct: 9 SDSSLFETYNVELVRKDGQ-SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQV 67
Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
D+I+A++G + + + + + + L + RR S T
Sbjct: 68 NDKIVAVDGVNIQGFANHDVVEVLRNAGQ-VVHLTLVRRKTSSST 111
Score = 62.1 bits (151), Expect = 7e-12
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 377 SSENSEDSQEGQTM-VRVNRRDFNEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKE 434
S DS +T V + R+D + LGI I + S G G V ++ G A
Sbjct: 4 GSSGGSDSSLFETYNVELVRKD-GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHN 62
Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G +++ D+I++V+G ++G ++ + + L + R
Sbjct: 63 GHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 101 bits (254), Expect = 6e-26
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
HT+ + PG G G I GG+D+P G I I +L G A +G+L+E D + +
Sbjct: 9 HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
NG ++ H A+ + + + I R+
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGK-NAKITIRRK 96
Score = 53.5 bits (129), Expect = 5e-09
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 395 RRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
R GI I+ +++ G V++ ++ GG AE G L+ D + VNG +
Sbjct: 14 HRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMD 71
Query: 453 GLTMTQAKSIISSGPLNMDLLISR 476
+ A + N + I R
Sbjct: 72 NVEHAFAVQQLRKSGKNAKITIRR 95
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 100 bits (252), Expect = 1e-25
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ +K +G +I GG ++I + DN AA DG + GDEI +NG+
Sbjct: 26 GKVTLQKDAQN-LIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
T +E + + +K G +++H +
Sbjct: 82 SIKGKTKVEVAKMIQEVK-GEVTIHYNKL 109
Score = 61.7 bits (150), Expect = 8e-12
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 367 YHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIV 426
+H +L +EN V + ++D +GI I + +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMVPGKVTL-QKDAQNLIGISIGGGAQYCPC----LYIVQVF 58
Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
A +G + GDEI VNG+ ++G T + +I + + ++
Sbjct: 59 DNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 101 bits (253), Expect = 1e-25
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
+ +K +G +I GG ++I + DN AA DG + GDEI +N
Sbjct: 19 VPGKVTLQKDAQN-LIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVN 74
Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
G+ T +E + + +K G +++H +
Sbjct: 75 GRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL 104
Score = 59.4 bits (144), Expect = 5e-11
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE 434
+ E + ++D +GI I ++ + + A +
Sbjct: 6 DYDIEEDKLGIPTVPGKVTLQKDAQNLIGI---SIGGGAQYCPC-LYIVQVFDNTPAALD 61
Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G + GDEI VNG+ ++G T + +I + + ++
Sbjct: 62 GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 103
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 99.6 bits (249), Expect = 2e-25
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ K GLGF I+GGK+ I+I ++ G A G LK GD++L++NG
Sbjct: 7 GVVELPKTDE--GLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
H +A+ L K + GS+ L +
Sbjct: 62 SVEGEQHEKAVELLKAAQ-GSVKLVVRSG 89
Score = 57.3 bits (139), Expect = 1e-10
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
LG I + ++ ++ GG+A++ G L+ GD+++SVNG + G +A
Sbjct: 18 LGFNIM----GGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVE 73
Query: 462 IISSGPLNMDLLISR 476
++ + ++ L++
Sbjct: 74 LLKAAQGSVKLVVRS 88
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 100 bits (250), Expect = 2e-25
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
RP I+ KG GLGF IVGG+D GIF+ IL G A G L+
Sbjct: 6 SGRPGGDAREPRKIILHKGST--GLGFNIVGGEDGE----GIFVSFILAGGPADLSGELR 59
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
GD IL++NG + TH +A + K S+++ R
Sbjct: 60 RGDRILSVNGVNLRNATHEQAAAALKRAGQ-SVTIVAQYR 98
Score = 58.5 bits (142), Expect = 9e-11
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
S + + + ++ + LG I ++ G V+ I++GG A+ G
Sbjct: 3 SGSSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDG-----EGIFVSFILAGGPADLSGE 57
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L GD I+SVNG LR T QA + + ++ ++
Sbjct: 58 LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQY 97
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 99.6 bits (249), Expect = 2e-25
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ K GF I GG R + + I S+ G A +G +K GD +L+++G
Sbjct: 6 EVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGI 63
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
TH EA+S+ K +L I
Sbjct: 64 RLLGTTHAEAMSILKQCGQ-EAALLIEYD 91
Score = 64.6 bits (158), Expect = 4e-13
Identities = 25/86 (29%), Positives = 37/86 (43%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V V G I + V+ + GG A++EG ++ GD ++SV+G R
Sbjct: 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
L G T +A SI+ LLI
Sbjct: 65 LLGTTHAEAMSILKQCGQEAALLIEY 90
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 99.4 bits (248), Expect = 3e-25
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ K GK LG ++ + G I ++ D +L+ GD I NG
Sbjct: 4 FNVDLMKKAGK-ELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITKFNGD 56
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
L +LFK NG +S+ + R
Sbjct: 57 ALEGLPFQVCYALFKGA-NGKVSMEVTRP 84
Score = 59.7 bits (145), Expect = 3e-11
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V + ++ +ELG+ ++ N G +A ++ G E + L+ GD I NG
Sbjct: 6 VDLMKKA-GKELGLSLS-------PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 57
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
L GL ++ + + ++R
Sbjct: 58 LEGLPFQVCYALFKGANGKVSMEVTR 83
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 100 bits (249), Expect = 1e-24
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGK---DSPRGAIGIFIKSILDNGQAAEDGRL 624
R + EK +GLG +I+G D +GIF+K++ + G A DGR+
Sbjct: 73 EKRVERLELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRI 130
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
+ D ++ ++G +T A S+ + K G + I R
Sbjct: 131 QVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGR 169
Score = 61.5 bits (149), Expect = 3e-11
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 348 RNSGSQSLLEIPAYQNSSDYHSMME----ISELSSENSEDSQEGQTMVRVNRRDFNEELG 403
+ S + +++ + ++ DY E ++ + E E + V +E LG
Sbjct: 35 KIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLG 94
Query: 404 IYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
I I + ++ + G V + GG A ++G +++ D ++ V+G L G+T + A S
Sbjct: 95 ISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAAS 154
Query: 462 IISSGPLNMDLLISR 476
++ + + +I R
Sbjct: 155 VLRNTKGRVRFMIGR 169
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 97.0 bits (242), Expect = 1e-24
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ K GLG +I GG+++ + I I I A + L GD IL++NG+
Sbjct: 6 RRVTVRKADAG-GLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGE 61
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLK 667
TH EA+ K + L + + +K
Sbjct: 62 DLSSATHDEAVQALKKTGK-EVVLEV-KYMK 90
Score = 58.1 bits (141), Expect = 6e-11
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V V + D LGI I N +++ I G A++ L +GD I+SVNG+
Sbjct: 8 VTVRKAD-AGGLGISIK----GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
L T +A + + L +
Sbjct: 63 LSSATHDEAVQALKKTGKEVVLEVKY 88
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 98.4 bits (245), Expect = 1e-24
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRG 603
S+GS E+ + + S++ G GLG ++
Sbjct: 2 SSGSSGSKNEKE------QLSKAKASVSSLNKVIQTKLTVGN--LGLGLVVIQNGP---- 49
Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHI 662
+ I +++ G AA DG L+ GD ++++ T E + L + I G+ + +
Sbjct: 50 --YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKA 107
Query: 663 CR 664
R
Sbjct: 108 YR 109
Score = 54.5 bits (131), Expect = 3e-09
Identities = 18/106 (16%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKN----SSEGNIGGFVVAHIVSGGLAE 432
S S++ +E + + + N+ + + N ++H+++ G A
Sbjct: 4 GSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAA 63
Query: 433 KEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
+G L+ GD +ISV + G T+ + ++ + + + + R
Sbjct: 64 SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 97.4 bits (243), Expect = 1e-24
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ + +GLGF+I GG + +GI++ + A ++G L+ GD+IL +N +
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDK 65
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
+TH EA+ K K +S++ R+ +
Sbjct: 66 SLARVTHAEAVKALKGSKKLVLSVYSAGRISGPSS 100
Score = 54.7 bits (132), Expect = 1e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
S S +V + R +E LG I+ SE +G +V + + G LAEKEG L +G
Sbjct: 2 SSGSSGEVRLVSLRRAKAHEGLGF---SIRGGSEHGVGIYV-SLVEPGSLAEKEG-LRVG 56
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSL 479
D+I+ VN + L +T +A + + + S +
Sbjct: 57 DQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRI 95
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 97.0 bits (242), Expect = 2e-24
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+PR PR IV +G GLGF IVGG+ GIFI IL G A G L
Sbjct: 8 IPREPR-------RIVIHRGST--GLGFNIVGGEXGE----GIFISFILAGGPADLSGEL 54
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
++GD+IL++NG + +H +A K ++++ +
Sbjct: 55 RKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQYK 94
Score = 57.7 bits (140), Expect = 2e-10
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 378 SENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCL 437
ED + ++R LG I + G ++ I++GG A+ G L
Sbjct: 2 GLGEEDIPREPRRIVIHRGS--TGLGFNIVGGEXGE-----GIFISFILAGGPADLSGEL 54
Query: 438 ELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GD+I+SVNG LR + QA + + + ++
Sbjct: 55 RKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY 93
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 97.1 bits (242), Expect = 3e-24
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+PR PR IV +G GLGF IVGG+D GIFI IL G A G L
Sbjct: 11 IPREPR-------RIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSGEL 57
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
++GD+IL++NG + +H +A K ++++ +
Sbjct: 58 RKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQYK 97
Score = 57.4 bits (139), Expect = 3e-10
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
ED + ++R + LG I ++ G ++ I++GG A+ G
Sbjct: 4 EFLGEEDIPREPRRIVIHRG--STGLGFNIVGGEDGE-----GIFISFILAGGPADLSGE 56
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREK 496
L GD+I+SVNG LR + QA + + + ++ E E++SR
Sbjct: 57 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY-----KPEEYSRFEANSRVD 111
Query: 497 KSKETR 502
S
Sbjct: 112 SSGRIV 117
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 96.4 bits (240), Expect = 4e-24
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
++ K GLGF + P + I ++ G A + G ++ GD ILA+N +
Sbjct: 4 SVRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
DL++ A+ + + I + + + I R +
Sbjct: 59 LVDLSYDSALEVLRGIASETHVVLILRGPEG 89
Score = 60.6 bits (147), Expect = 2e-11
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
VR+ +R LG + + + +++ ++ GG AE+ G ++ GD I++VN +
Sbjct: 5 VRLFKRK-VGGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFS 504
L L+ A ++ +++ + E + + + K R +
Sbjct: 59 LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLE--TTFTGDGTPKTIRVT 110
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 96.4 bits (240), Expect = 5e-24
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRG------AIGIFIKSILDNGQAAEDGRLKEGDEIL 631
+ + P LG +IVGG+ + GIFIK +L++ A + LK GD+IL
Sbjct: 18 IVEIFREPNV-SLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
++G + +H EA+ K N + + + +
Sbjct: 77 EVSGVDLQNASHSEAVEAIKNAGN-PVVFIVQSLSSTPR 114
Score = 62.5 bits (152), Expect = 4e-12
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLA 431
S S G + R+ N LGI I + + + G + ++ A
Sbjct: 4 GSSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPA 63
Query: 432 EKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
K L+ GD+I+ V+G L+ + ++A I + + ++
Sbjct: 64 GKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 96.0 bits (239), Expect = 7e-24
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRG----AIGIFIKSILDNGQAAEDGRLKEGDEILA 632
+V + + G GF I+ + P + I I+D A +LK GD ILA
Sbjct: 12 SDVVIHRKENE-GFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+NGQ ++ H + + L K S++L I +
Sbjct: 71 VNGQSIINMPHADIVKLIKDAGL-SVTLRIIPQ 102
Score = 63.2 bits (154), Expect = 2e-12
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG---GFVVAHIVSGGLAEKEGC 436
+ + V ++R++ NE G I N E + I+ G A++
Sbjct: 3 SGSSGSLQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK 61
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L++GD I++VNGQ + + +I L++ L I
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP 101
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 95.1 bits (237), Expect = 1e-23
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDG 622
P T+ + G GLG +I GGK S GIFI + + G AA G
Sbjct: 6 SGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 63
Query: 623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
++ GD++L +NG H EA+ + ++ + + R
Sbjct: 64 -VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT-AVQMRVWRE 104
Score = 57.4 bits (139), Expect = 2e-10
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA--KIKNSSEGNIGGFVVAHIVSGGLA 431
S SS +E + + + R+ LGI IA K +G+ G ++ + G A
Sbjct: 2 SSGSSGEPARIEEEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPA 59
Query: 432 EKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
+ G + +GD+++ VNG L+G +A + + + + R
Sbjct: 60 ARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 93.9 bits (234), Expect = 2e-23
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
T+ + G GLG +I GGK S GIFI + + G AA G ++ GD++L +
Sbjct: 5 LTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
NG H EA+ + ++ + + R ++
Sbjct: 62 NGVALQGAEHHEAVEALRGAGT-AVQMRVWRERET 95
Score = 54.6 bits (132), Expect = 1e-09
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 402 LGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
LGI IA K +G+ G ++ + G A + G + +GD+++ VNG L+G +A
Sbjct: 16 LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEA 74
Query: 460 KSIISSGPLNMDLLISR 476
+ + + + R
Sbjct: 75 VEALRGAGTAVQMRVWR 91
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 97.5 bits (243), Expect = 2e-23
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRL 624
R + I KGP KGLGF+I GG + G I++ I++ G A +DGRL
Sbjct: 92 MRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRL 149
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
+ GD+ILA+N D+ H +A++ K + L + + ++
Sbjct: 150 QIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKPSNAE 193
Score = 95.2 bits (237), Expect = 1e-22
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
+ I E+G GLGF+I GG D+P IFI I+ G AA+DGRL+ D IL +
Sbjct: 6 YEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
N ++TH A+ K + + L++ R
Sbjct: 64 NEVDVREVTHSAAVEALKEAGS-IVRLYVMR 93
Score = 65.5 bits (160), Expect = 2e-12
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSS-EGNIGGFVVAHIVSGGLAEKEGCLELGDE 442
S + R N LG IA ++ G+ + I+ GG A ++G L + D
Sbjct: 1 SGSMEYEEITLERG-NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59
Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETR 502
I+ VN +R +T + A + + L + R E K K
Sbjct: 60 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR-----KPPAEKVMEIKLIKGPKGLG 114
Query: 503 FSL 505
FS+
Sbjct: 115 FSI 117
Score = 64.4 bits (157), Expect = 5e-12
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 399 NEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
+ LG IA + N V I+ GG A K+G L++GD+I++VN L +
Sbjct: 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE 169
Query: 458 QAKSIISSGPLNMDLLISRTSLKKSNA 484
A + + + + L +++ S ++ A
Sbjct: 170 DAVAALKNTYDVVYLKVAKPSNAETMA 196
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 93.2 bits (232), Expect = 5e-23
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
++ K + GLG +I GGK+ + I I I A G L GD ILA+NG
Sbjct: 11 RKVLLLKEDHE-GLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGV 66
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
D H EA+++ + G I +
Sbjct: 67 NLRDTKHKEAVTILSQQR-GEIEFEVVYV 94
Score = 65.1 bits (159), Expect = 4e-13
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 379 ENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLE 438
+ S+ V + + D +E LGI I + + +++ I G A++ G L
Sbjct: 2 KKSQGVGP-IRKVLLLKED-HEGLGISIT----GGKEHGVPILISEIHPGQPADRCGGLH 55
Query: 439 LGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAE 485
+GD I++VNG LR +A +I+S ++ + +L+ +
Sbjct: 56 VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHHH 102
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 93.8 bits (233), Expect = 6e-23
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
++ K GLGF + P + I ++ G A + G ++ GD ILA+N +
Sbjct: 10 ISVRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDR 64
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
DL++ A+ + + I + + + I R +
Sbjct: 65 PLVDLSYDSALEVLRGIASETHVVLILRGPEG 96
Score = 59.5 bits (144), Expect = 6e-11
Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 8/124 (6%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
S + VR+ +R LG + + + +++ ++ GG AE+ G ++ G
Sbjct: 2 SHMIEPNVISVRLFKRK-VGGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAG 55
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKE 500
D I++VN + L L+ A ++ +++ + + + K
Sbjct: 56 DIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR--GPEGFTTHLETTFTGDGTPKT 113
Query: 501 TRFS 504
R +
Sbjct: 114 IRVT 117
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 92.4 bits (230), Expect = 6e-23
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
++ K + + + G IF+K + G A +DG L EGD IL ING V
Sbjct: 3 GVLLMKS--RANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHEGDIILKINGTV 53
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
+++ +A L + + G + L + R L+
Sbjct: 54 TENMSLTDARKLIEKSR-GKLQLVVLRDLEHHH 85
Score = 62.0 bits (151), Expect = 3e-12
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V + + NEE G+ + V + GLA K+G L GD I+ +NG
Sbjct: 4 VLLMKSRANEEYGLRLGS----------QIFVKEMTRTGLATKDGNLHEGDIILKINGTV 53
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
+++T A+ +I + L++ R
Sbjct: 54 TENMSLTDARKLIEKSRGKLQLVVLR 79
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 92.1 bits (229), Expect = 1e-22
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
++ K + GLG +I GGK+ + I I I A G L GD ILA+NG
Sbjct: 29 RKVLLLKEDHE-GLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGV 84
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
D H EA+++ + G I +
Sbjct: 85 NLRDTKHKEAVTILSQQR-GEIEFEV 109
Score = 63.6 bits (155), Expect = 1e-12
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 362 QNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFV 421
+ +HS I EN +G V + + D +E LGI I + + +
Sbjct: 4 HHHHHHHSSGHIEGRHMENLYF--QGIRKVLLLKED-HEGLGISIT----GGKEHGVPIL 56
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
++ I G A++ G L +GD I++VNG LR +A +I+S ++ +
Sbjct: 57 ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 90.8 bits (226), Expect = 2e-22
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
T+ KGP G GFTI G +K I+D + LKEGD I+ +N
Sbjct: 4 LITVHIVKGP--MGFGFTIADSPGGG----GQRVKQIVD---SPRSRGLKEGDLIVEVNK 54
Query: 636 QVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
+ LTH + + + GS ++L + R+
Sbjct: 55 KNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLIS 475
GG V IV + L+ GD I+ VN + ++ LT Q ++ P + LL+
Sbjct: 27 GGQRVKQIVDSP---RSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQ 83
Query: 476 R 476
R
Sbjct: 84 R 84
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 90.8 bits (226), Expect = 3e-22
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+T+ ++ G LG TI G ++ I I S+ G A G + GD ILAIN
Sbjct: 7 YTVELKRYGG--PLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSS 61
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
EAI L + +++L I ++ ++
Sbjct: 62 SLKGKPLSEAIHLLQMAG-ETVTLKIKKQTDAQ 93
Score = 59.6 bits (145), Expect = 2e-11
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
LGI I+ +E +++ + GGLAE+ G + +GD I+++N L+G +++
Sbjct: 15 GGPLGITIS----GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSE 70
Query: 459 AKSIISSGPLNMDLLISR 476
A ++ + L I +
Sbjct: 71 AIHLLQMAGETVTLKIKK 88
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 90.6 bits (225), Expect = 4e-22
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
+ + +K LG I GG ++ + I +I G A G+LK G IL +N
Sbjct: 6 SGTLVRVKKSAA--TLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVILEVN 61
Query: 635 GQVCHDLTHLEAISLFKT 652
G H EA +
Sbjct: 62 GLTLRGKEHREAARIIAE 79
Score = 58.6 bits (142), Expect = 7e-11
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEII 444
G + V + LGI I N+ + + I GG A G L++G I+
Sbjct: 2 SSGSSGTLVRVKKSAATLGIAIEGGANTRQPLP---RIVTIQRGGSAHNCGQLKVGHVIL 58
Query: 445 SVNGQRLRGLTMTQAKSIISSGPLN-----MDLLISR 476
VNG LRG +A II+ +D L++
Sbjct: 59 EVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE 95
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 90.2 bits (224), Expect = 5e-22
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
+ EK P LGF+I GG GIF+ + G A L+ GD+I+
Sbjct: 13 IRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 67
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
NG ++ H +A+SL KT +N ++ L I R + S
Sbjct: 68 QANGYSFINIEHGQAVSLLKTFQN-TVELIIVREVSS 103
Score = 54.0 bits (130), Expect = 3e-09
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 378 SENSEDSQEGQTMVRVNRRDFNEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEK 433
S + + + VRV + + ELG I+ N + G V + G A
Sbjct: 2 SHMGHELAKQEIRVRVEK---DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS- 57
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L+ GD+II NG + QA S++ + ++L+I R
Sbjct: 58 -KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 93.3 bits (232), Expect = 5e-22
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKD-SPRGAIGIFIKSILDNGQAAEDGRL 624
+ S + + K GF I GG + + I + G A +G +
Sbjct: 97 SIQGSSVMFRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTI 154
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
K GD +L+++G TH EA+S+ K +L I
Sbjct: 155 KPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ-EATLLIEYD 194
Score = 85.2 bits (211), Expect = 3e-19
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ K G LG T+ GG D + ++ G AA +L GD I A+NG
Sbjct: 10 VVELMKKEGT-TLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN 65
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRL 666
H E ISL K + + L + L
Sbjct: 66 LAKFRHDEIISLLKNVGE-RVVLEVEYEL 93
Score = 72.5 bits (178), Expect = 1e-14
Identities = 29/115 (25%), Positives = 46/115 (40%)
Query: 362 QNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFV 421
+N + + EL + + S V V G I + V
Sbjct: 79 KNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVV 138
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
+ + GG A++EG ++ GD ++SV+G RL G T +A SI+ LLI
Sbjct: 139 ITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEY 193
Score = 70.5 bits (173), Expect = 5e-14
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
S +G T+V + +++ LG+ ++ G V+++ GG+A + L++GD I
Sbjct: 4 SFKGSTVVELMKKE-GTTLGLTVS----GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYI 58
Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETR- 502
+VNG L + S++ + + L + S + KE
Sbjct: 59 KAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNT 118
Query: 503 --FSL 505
F +
Sbjct: 119 FGFVI 123
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 90.1 bits (224), Expect = 6e-22
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ +K PG LGF I GGK S +GIFI ++ + A G L+EGD++LA+N
Sbjct: 18 IVTLKKPPGA-QLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVD 72
Query: 638 CHDLTHLEAISLFKTIKNGSISL 660
D+ H +A+ + KT + S+ +
Sbjct: 73 FQDIEHSKAVEILKTAREISMRV 95
Score = 56.6 bits (137), Expect = 3e-10
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
S SS N+E +Q +V + + +LG I K S G ++ ++ A +
Sbjct: 2 SSGSSGNNELTQFLPRIVTLKKPP-GAQLGFNIRGGKASQLG----IFISKVIPDSDAHR 56
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP 467
G L+ GD++++VN + + ++A I+ +
Sbjct: 57 AG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR 89
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 89.4 bits (222), Expect = 9e-22
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
+ EK P LGF+I GG GIF+ + G A L+ GD+I+
Sbjct: 5 IRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 59
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
NG ++ H +A+SL KT +N ++ L I R + S
Sbjct: 60 QANGYSFINIEHGQAVSLLKTFQN-TVELIIVREVSS 95
Score = 53.6 bits (129), Expect = 3e-09
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 391 VRVNRRDFNEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
+RV + ELG I+ N + G V + G A L+ GD+II
Sbjct: 5 IRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 61
Query: 447 NGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
NG + QA S++ + ++L+I R
Sbjct: 62 NGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 92.6 bits (230), Expect = 1e-21
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
I + +G + GGK++ G I + GQ A D RLK D I ING
Sbjct: 21 LIELKVEKK--PMGVIVCGGKNNHVTT-GCVITHVYPEGQVAADKRLKIFDHICDINGTP 77
Query: 638 CHD--LTHLEAISLFKTIKNGSISLHICRR 665
H +T L+ LF T +++L + R
Sbjct: 78 IHVGSMTTLKVHQLFHTTYEKAVTLTVFRA 107
Score = 90.7 bits (225), Expect = 5e-21
Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 16/137 (11%)
Query: 532 SINNKLLRKAIISTGSISGDEEETILTSTN---FCTLPRRPRSAICTFHTIVFEKGPGKK 588
IN + S++ + + +T R + K GK
Sbjct: 72 DINGTPIHVG-----SMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK- 125
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
LG ++ + G I ++ D +L+ GD I NG L +
Sbjct: 126 ELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 179
Query: 649 LFKTIKNGSISLHICRR 665
LFK G +S+ + R
Sbjct: 180 LFKGAN-GKVSMEVTRP 195
Score = 65.3 bits (159), Expect = 3e-12
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 355 LLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSE 414
+ +I N + H + + + E + V R D E + +K + +
Sbjct: 70 ICDI----NGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125
Query: 415 G-------NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP 467
N G +A ++ G E + L+ GD I NG L GL ++
Sbjct: 126 ELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 185
Query: 468 LNMDLLISR 476
+ + ++R
Sbjct: 186 GKVSMEVTR 194
Score = 55.7 bits (134), Expect = 5e-09
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
+ +G+ + KN+ G V+ H+ G + L++ D I +NG + +MT
Sbjct: 28 KKPMGVIVCGGKNNHVTT--GCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT 85
Query: 459 AKSI 462
K
Sbjct: 86 LKVH 89
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 89.8 bits (223), Expect = 1e-21
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ K PG LG ++ + I I I G L GD IL+I+G
Sbjct: 18 MVEIVKTPGS-ALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDGTS 74
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
+ LEA L +I + L I +S+
Sbjct: 75 MEHCSLLEATKLLASIS-EKVRLEILPVPQSQ 105
Score = 70.2 bits (172), Expect = 8e-15
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
SS ++ + G MV + + LGI + ++ I + I + ++ G
Sbjct: 5 SSGDTVANASGPLMVEIVKTP-GSALGISLTTTSLRNKSVI---TIDRIKPASVVDRSGA 60
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
L GD I+S++G + ++ +A +++S + L I
Sbjct: 61 LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVP 102
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 98.1 bits (243), Expect = 2e-21
Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 42/284 (14%)
Query: 383 DSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGD 441
+ ++ + + LG IA + V I+ GG A K+G L++GD
Sbjct: 148 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 207
Query: 442 EIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKET 501
+I++VN L + A + + + + L +++ S + + + + +
Sbjct: 208 KILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDN 267
Query: 502 RFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTN 561
S + + +R + +
Sbjct: 268 EISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEE------------------------- 302
Query: 562 FCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAED 621
+PR PR IV +G GLGF IVGG+D GIFI IL G A
Sbjct: 303 --DIPREPR-------RIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLS 347
Query: 622 GRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
G L++GD+IL++NG + +H +A K ++++ +
Sbjct: 348 GELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYK 390
Score = 85.3 bits (210), Expect = 2e-17
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGA--IGIFIKSILDNGQAAEDGRLKEGDEILA 632
+ I E+G GLGF+I GG D+P IFI I+ G AA+DGRL+ D IL
Sbjct: 59 EYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 116
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+N ++TH A+ K + L++ RR
Sbjct: 117 VNEVDVREVTHSAAVEALKEAG-SIVRLYVMRR 148
Score = 64.5 bits (156), Expect = 6e-11
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 2/146 (1%)
Query: 350 SGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA-K 408
S +P NS + + + ++ + N LG IA
Sbjct: 21 PLKHSPAHLPNQANSPPVIVNTD-TLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGG 79
Query: 409 IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468
N G+ + I+ GG A ++G L + D I+ VN +R +T + A +
Sbjct: 80 TDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS 139
Query: 469 NMDLLISRTSLKKSNAENEYNESHSR 494
+ L + R +
Sbjct: 140 IVRLYVMRRKPPAEKVMEIKLIKGPK 165
Score = 60.3 bits (145), Expect = 1e-09
Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 5/147 (3%)
Query: 352 SQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKN 411
S S Y + S S ++ + + + R+ + LG I ++
Sbjct: 270 SHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGED 329
Query: 412 SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMD 471
G ++ I++GG A+ G L GD+I+SVNG LR + QA + + +
Sbjct: 330 G-----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT 384
Query: 472 LLISRTSLKKSNAENEYNESHSREKKS 498
++ + S E + ++ + S
Sbjct: 385 IIAQYKPEEYSRFEAKIHDLREQLMNS 411
Score = 57.2 bits (137), Expect = 1e-08
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 570 RSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEG 627
R + + G KGLGF+I GG + G I++ I++ G A +DGRL+ G
Sbjct: 147 RRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIG 206
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
D+ILA+N D+ H +A++ K + L + +
Sbjct: 207 DKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAK 242
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 87.7 bits (218), Expect = 2e-21
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ K + G + IF+K I + AA DG ++EGD +L ING V
Sbjct: 3 KVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 53
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICR 664
+++ +A +L + K G + + + R
Sbjct: 54 TENMSLTDAKTLIERSK-GKLKMVVQR 79
Score = 69.2 bits (170), Expect = 6e-15
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
+ V + + NEE G+ +A V I LA ++G ++ GD ++ +NG
Sbjct: 2 SKVTLVKSRKNEEYGLRLA----------SHIFVKEISQDSLAARDGNIQEGDVVLKING 51
Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISR 476
+++T AK++I + +++ R
Sbjct: 52 TVTENMSLTDAKTLIERSKGKLKMVVQR 79
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 87.5 bits (217), Expect = 3e-21
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ K + G + IF+K I + AA DG ++EGD +L ING V
Sbjct: 5 KVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
+++ +A +L + K G + + + R ++
Sbjct: 56 TENMSLTDAKTLIERSK-GKLKMVVQRDERA 85
Score = 71.3 bits (175), Expect = 1e-15
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
T V + + NEE G+ +A V I LA ++G ++ GD ++ +NG
Sbjct: 4 TKVTLVKSAKNEEYGLRLA----------SHIFVKEISQDSLAARDGNIQEGDVVLKING 53
Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISR 476
+++T AK++I + +++ R
Sbjct: 54 TVTENMSLTDAKTLIERSKGKLKMVVQR 81
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 87.0 bits (216), Expect = 4e-21
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GF + GGKD + + I + G+AA+ G + GD +L+I+G+ LTH+
Sbjct: 10 EGPAPWGFRLQGGKDFN---VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHI 65
Query: 645 EAISLFKTIKNGSISLHICRRLKS 668
EA + + +SL + R + S
Sbjct: 66 EAQNKIRACGE-RLSLGLSRAITS 88
Score = 53.5 bits (129), Expect = 3e-09
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
++ + GG A + G + +GD ++S++G+ LT +A++ I + + L +SR
Sbjct: 28 PLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSR 84
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 87.5 bits (217), Expect = 4e-21
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ EK G+ GLG +V I ++L G A G L GD + AING
Sbjct: 12 EVHLEKRRGE-GLGVALVESGWGSLLP-TAVIANLLHGGPAERSGALSIGDRLTAINGTS 69
Query: 638 CHDLTHLEAISLFKTIKNG-SISLHICRR 665
L + + K+ S++L I
Sbjct: 70 LVGLPLAACQAAVRETKSQTSVTLSIVHC 98
Score = 67.1 bits (164), Expect = 7e-14
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
S S + V + +R E LG+ + +++ + V+A+++ GG AE+ G L +G
Sbjct: 3 SGSSGDNCREVHLEKRR-GEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIG 59
Query: 441 DEIISVNGQRLRGLTMTQAKSII--SSGPLNMDLLISRT 477
D + ++NG L GL + ++ + + ++ L I
Sbjct: 60 DRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 88.3 bits (219), Expect = 5e-21
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ G G+ LG TI GG + +GI+I + +A G LK GD+IL +NG+
Sbjct: 23 KVNLVLGDGR-SLGLTIRGGAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRS 77
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
++ H EA+ L K+ ++ +++ RL +T
Sbjct: 78 FLNILHDEAVRLLKSSRHLILTVKDVGRLPHART 111
Score = 50.2 bits (120), Expect = 9e-08
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
V + D LG+ I+ +E +G + + G AE G L++GD+I+ VNG+
Sbjct: 23 KVNLVLGD-GRSLGL---TIRGGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILEVNGR 76
Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISRT 477
+ +A ++ S ++ L +
Sbjct: 77 SFLNILHDEAVRLLKSSR-HLILTVKDV 103
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 89.1 bits (221), Expect = 1e-20
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
+ + TFH + + LG TI G + I I A G L
Sbjct: 98 VAESVIPSSGTFHVKLPK--KHSVELGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTL 154
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
+ GD++LAI+ + +A+ + + + + L I +
Sbjct: 155 ELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRK 193
Score = 87.9 bits (218), Expect = 4e-20
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+V P G G + G + + I I + A G L+ GD ++AING
Sbjct: 9 EVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI 67
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
D T EA L + + + + ++
Sbjct: 68 PTEDSTFEEANQLLRDSSI-TSKVTLEIEFDVAES 101
Score = 72.1 bits (177), Expect = 1e-14
Identities = 19/118 (16%), Positives = 43/118 (36%)
Query: 386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIIS 445
+T V D GI + ++E ++++I + AE+ G L++GD +++
Sbjct: 4 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63
Query: 446 VNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRF 503
+NG T +A ++ + + + + H + K
Sbjct: 64 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVEL 121
Score = 68.6 bits (168), Expect = 2e-13
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE 434
E S G V++ ++ + ELGI I+ + G+ V++ I G +A +
Sbjct: 95 EFDVAESVIPSSGTFHVKLPKKH-SVELGITISSPSSRKPGD--PLVISDIKKGSVAHRT 151
Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
G LELGD++++++ RL +M A I+ + L I +
Sbjct: 152 GTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 193
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 85.5 bits (212), Expect = 2e-20
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+ + + G GFT+ GG + + + I D G+AA +++ GDE++ ING
Sbjct: 12 YVPVQLQGGAP---WGFTLKGGLEHCEP---LTVSKIEDGGKAALSQKMRTGDELVNING 65
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ + EA+ L K + L + RR
Sbjct: 66 TPLYG-SRQEALILIKGSFR-ILKLIVRRR 93
Score = 49.3 bits (118), Expect = 1e-07
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
+ Q V V + G + E V+ I GG A +
Sbjct: 3 SGSSGGSFQY-VPVQLQG-GAPWGFTLKGGLEHCEP----LTVSKIEDGGKAALSQKMRT 56
Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
GDE++++NG L G + +A +I + L++ R
Sbjct: 57 GDELVNINGTPLYG-SRQEALILIKGSFRILKLIVRR 92
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 85.5 bits (212), Expect = 2e-20
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
H++ EK P LGF++ GG + +GIF+ + + A G L GD+I +NG
Sbjct: 12 HSVRVEKSPAG-RLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGL 66
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
T A+ + + + + + R
Sbjct: 67 SLESTTMGSAVKVLT--SSSRLHMMVRRM 93
Score = 57.0 bits (138), Expect = 2e-10
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
+ + VRV + LG ++ SE +G V+ + G AE+ G L +
Sbjct: 3 SGSSGSDIIHSVRVEKSP-AGRLGF---SVRGGSEHGLG-IFVSKVEEGSSAERAG-LCV 56
Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
GD+I VNG L TM A +++S + +++ R
Sbjct: 57 GDKITEVNGLSLESTTMGSAVKVLTSSS-RLHMMVRRMG 94
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 84.6 bits (210), Expect = 3e-20
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GF I GG+D I + + + G A+D L+ GD I+AING+ + H
Sbjct: 9 AGPAPWGFRITGGRDFH---TPIMVTKVAERG-KAKDADLRPGDIIVAINGESAEGMLHA 64
Query: 645 EAISLFKTIKNGSISLHICR 664
EA S + + + L + R
Sbjct: 65 EAQSKIRQSPS-PLRLQLDR 83
Score = 55.0 bits (133), Expect = 8e-10
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
+V + G A+ L GD I+++NG+ G+ +A+S I P + L + R +
Sbjct: 27 PIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT 85
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 83.9 bits (208), Expect = 5e-20
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
H + K G + GF++ G G+++K+I G G LK D +L +N
Sbjct: 7 LHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
D + L N + L I R
Sbjct: 62 VRTRDFDCCLVVPLIAESGN-KLDLVISRN 90
Score = 60.4 bits (147), Expect = 1e-11
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
V + + E+ G +A G V +I G + G L+ D ++ VN R
Sbjct: 10 VTLYKDSGMEDFGFSVADGLLEK-----GVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVR 63
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
R +I+ +DL+ISR
Sbjct: 64 TRDFDCCLVVPLIAESGNKLDLVISR 89
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 83.5 bits (207), Expect = 7e-20
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+++ GF + GGKD + + I I A +L +GD ++AI+G
Sbjct: 3 YSVTLTGPGP---WGFRLQGGKDFN---MPLTISRITPGS-KAAQSQLSQGDLVVAIDGV 55
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLK 667
+THLEA + K+ ++SL + + +
Sbjct: 56 NTDTMTHLEAQNKIKSASY-NLSLTLQKSKR 85
Score = 52.6 bits (127), Expect = 5e-09
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
++ I G A + L GD +++++G +T +A++ I S N+ L + ++
Sbjct: 26 PLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 83.5 bits (207), Expect = 7e-20
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
+ G GF + GGKD + I S+ D G A ++ GD +L+I+
Sbjct: 1 SMSNYSVSL-VGPAPWGFRLQGGKDFNMP---LTISSLKDGG-KAAQANVRIGDVVLSID 55
Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
G +THLEA + K S+++ + R
Sbjct: 56 GINAQGMTHLEAQNKIKGCTG-SLNMTLQRE 85
Score = 53.4 bits (129), Expect = 3e-09
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
++ + GG A + + +GD ++S++G +G+T +A++ I ++++ + R S
Sbjct: 28 PLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES 86
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 84.9 bits (210), Expect = 9e-20
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAI------GIFIKSILDNGQAAEDGRLKEGDEIL 631
+ K +K LGF I G GIFI ++ G A G L DE+L
Sbjct: 32 RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVL 91
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
+NG + + + ++ + +
Sbjct: 92 EVNGIEVSGKSLDQVTDMMIANS-RNLIITV 121
Score = 69.5 bits (170), Expect = 2e-14
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSG 428
S + + E VR+ + + LG YI ++ + G ++ +V G
Sbjct: 16 PVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPG 75
Query: 429 GLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
GLA+ G L + DE++ VNG + G ++ Q ++ + N+ + + +
Sbjct: 76 GLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN 125
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 84.1 bits (208), Expect = 1e-19
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+ F KG +G + GG D +GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 31 KLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 81
Query: 637 VCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
++ EA+ + G +++ ++
Sbjct: 82 DFTNIIREEAVLFLLDLPKGEEVTILAQKK 111
Score = 56.4 bits (136), Expect = 8e-10
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 364 SSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVA 423
SS +H + + + +++ + + +G+ +A GN G VA
Sbjct: 3 SSHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAG------GNDVGIFVA 56
Query: 424 HIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
++ A KEG LE GD+I+ VN + +A + P ++ I
Sbjct: 57 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 106
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 82.4 bits (204), Expect = 2e-19
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
T+ KG +G GFTI G +K ILD L EGD I+ IN
Sbjct: 11 LMTLTIVKGA--QGFGFTIADSPT------GQRVKQILDIQGCP---GLCEGDLIVEINQ 59
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
Q +L+H E + + K GS + I R
Sbjct: 60 QNVQNLSHTEVVDILKDCPIGSETSLIIHR 89
Score = 42.4 bits (100), Expect = 2e-05
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
G IA + G V I+ L GD I+ +N Q ++ L+ T+
Sbjct: 23 FGFTIA-------DSPTGQRVKQILDIQGC---PGLCEGDLIVEINQQNVQNLSHTEVVD 72
Query: 462 IISSGPLN--MDLLISRTSLKKS 482
I+ P+ L+I R S S
Sbjct: 73 ILKDCPIGSETSLIIHRGSGPSS 95
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 82.9 bits (205), Expect = 3e-19
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
P + + + GLG +I G GIFI + +AE G L+ GD
Sbjct: 9 PGNRENKEKKVFISLVGSR-GLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGD 63
Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISL 660
+I+ +NG +L H EA+++ K+ ++ +IS+
Sbjct: 64 QIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 95
Score = 55.6 bits (134), Expect = 1e-09
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
S SS + + + + V ++ + LG I+ S G ++H+ G L+ +
Sbjct: 2 SSGSSGSPGNRENKEKKVFISLVG-SRGLGCSIS----SGPIQKPGIFISHVKPGSLSAE 56
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENE 487
G LE+GD+I+ VNG L +A +++ S +++ + +
Sbjct: 57 VG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRS 109
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 81.6 bits (202), Expect = 4e-19
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GF I GG+D I + + + G+A L+ GD I+AINGQ ++ H
Sbjct: 13 AGPAPWGFRISGGRDFHTP---IIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHA 68
Query: 645 EAISLFKTIKNGSISLHICRR 665
EA S + + + L + R
Sbjct: 69 EAQSKIRQSAS-PLRLQLDRS 88
Score = 53.1 bits (128), Expect = 4e-09
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
+V + G AE L GD I+++NGQ + +A+S I + L + R+S
Sbjct: 31 PIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS 89
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 81.3 bits (201), Expect = 5e-19
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ K LG TI FIK I D G + GD I +ING+
Sbjct: 8 EVNVYKSED--SLGLTITDNGVGY-----AFIKRIKDGGVIDSVKTICVGDHIESINGEN 60
Query: 638 CHDLTHLEAISLFKTIKNG-SISLHICRRLKS 668
H + K +K ++ + KS
Sbjct: 61 IVGWRHYDVAKKLKELKKEELFTMKLIEPKKS 92
Score = 50.9 bits (122), Expect = 3e-08
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
+ LG+ I + G G + I GG+ + + +GD I S+NG+ + G
Sbjct: 15 EDSLGLTI-----TDNGV-GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD 68
Query: 459 AKSIISSGP 467
+
Sbjct: 69 VAKKLKELK 77
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 81.2 bits (201), Expect = 6e-19
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
H++ GF +VGG+D + I + +AA L GD I AING+
Sbjct: 10 HSVTLRGPSP---WGFRLVGGRDFS---APLTISRVHAGSKAALAA-LCPGDLIQAINGE 62
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICR 664
+THLEA + K + ++L +
Sbjct: 63 STELMTHLEAQNRIKGCHD-HLTLSVSS 89
Score = 53.0 bits (128), Expect = 4e-09
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
++ + +G A L GD I ++NG+ +T +A++ I ++ L +S
Sbjct: 33 PLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 84.2 bits (208), Expect = 6e-19
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+ ++ +GLG ++ GG + G+FI ++ GQA G L+ GDEI+ ING
Sbjct: 85 LKEVRLDR-LHPEGLGLSVRGGLEFG---CGLFISHLIKGGQADSVG-LQVGDEIVRING 139
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
TH E I+L +T ++S+ +
Sbjct: 140 YSISSCTHEEVINLIRT--EKTVSIKVRHI 167
Score = 57.3 bits (138), Expect = 1e-09
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 359 PAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG 418
P + + E S++ + VR++R E LG+ ++ E G
Sbjct: 57 PLFDAIRPLIPLKHQVEYDQLTPRRSRKLKE-VRLDRLH-PEGLGL---SVRGGLEFGCG 111
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
F+ +H++ GG A+ G L++GDEI+ +NG + T + ++I + + + +
Sbjct: 112 LFI-SHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEK-TVSIKVRHIG 168
Query: 479 L 479
L
Sbjct: 169 L 169
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 80.4 bits (199), Expect = 1e-18
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
PR EKGP G GF + G K G +I+ + AE L G
Sbjct: 3 LPR-------LCCLEKGP--NGYGFHLHGEKGKL----GQYIRLVEPGS-PAEKAGLLAG 48
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRRLKSKK 670
D ++ +NG+ TH + +S I+ ++ L + ++
Sbjct: 49 DRLVEVNGENVEKETHQQVVSR---IRAALNAVRLLVVDPETDEQ 90
Score = 49.6 bits (119), Expect = 8e-08
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
+ + G ++ +G +G ++ + G AEK G L GD ++ VNG+
Sbjct: 7 CCLEKGP--NGYGFHLH----GEKGKLGQYI-RLVEPGSPAEKAG-LLAGDRLVEVNGEN 58
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
+ T Q S I + + LL+
Sbjct: 59 VEKETHQQVVSRIRAALNAVRLLVVD 84
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 80.1 bits (198), Expect = 1e-18
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GF +VGGKD + I + A L GD I AI+G+ ++THL
Sbjct: 10 QGPGPWGFRLVGGKDFE---QPLAISRVTPGS-KAALANLCIGDVITAIDGENTSNMTHL 65
Query: 645 EAISLFKTIKNGSISLHICRR 665
EA + K + +++L + R
Sbjct: 66 EAQNRIKGCTD-NLTLTVARS 85
Score = 50.4 bits (121), Expect = 3e-08
Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
T +++ + G ++ + ++ + G A L +GD I +++G
Sbjct: 3 TTQQIDLQG-PGPWGF---RLVGGKDFEQP-LAISRVTPGSKAALAN-LCIGDVITAIDG 56
Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
+ +T +A++ I N+ L ++R+
Sbjct: 57 ENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 81.6 bits (201), Expect = 1e-18
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 577 HTIVFEKGP--GKKGLGFTIVGGKDSP---------RGAIGIFIKSILDNGQAAEDGRLK 625
+ K LGF+I GG D + GI++ + + G A G L+
Sbjct: 25 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQ 83
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
GD+I+ +NG +TH +A + L + R+
Sbjct: 84 IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
Score = 55.8 bits (134), Expect = 1e-09
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 364 SSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA---------KIKNSSE 414
+H + + S + + R+ N LG I + +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDK 61
Query: 415 GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-KSIISSGPLNMDLL 473
+ G +V + GG AE G L++GD+I+ VNG + +T QA K + + LL
Sbjct: 62 TDKGIYV-TRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119
Query: 474 ISRTSLKKSNAENEYNESH 492
++R SL+K+ ++ +E+
Sbjct: 120 VTRQSLQKAVQQSMLSETE 138
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 80.5 bits (199), Expect = 1e-18
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G GF + GGKD + I S+ D G A ++ GD +L+I+G +THL
Sbjct: 12 VGPAPWGFRLQGGKDFNMP---LTISSLKDGG-KASQAHVRIGDVVLSIDGISAQGMTHL 67
Query: 645 EAISLFKTIKNGSISLHICRR 665
EA + K S+++ + R
Sbjct: 68 EAQNKIKACTG-SLNMTLQRA 87
Score = 53.9 bits (130), Expect = 3e-09
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
++ + GG A + + +GD ++S++G +G+T +A++ I + ++++ + R S
Sbjct: 30 PLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS 88
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 79.7 bits (197), Expect = 2e-18
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
PG GF + GG D + + I I A L GD ILAI+G +TH
Sbjct: 12 PGPAPWGFRLSGGIDFNQP---LVITRITPGS-KAAAANLCPGDVILAIDGFGTESMTHA 67
Query: 645 EAISLFKTIKNGSISLHICRR 665
+A K + L I R
Sbjct: 68 DAQDRIKAASY-QLCLKIDRA 87
Score = 52.4 bits (126), Expect = 9e-09
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
V+ I G A L GD I++++G +T A+ I + + L I R
Sbjct: 30 PLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR 86
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 80.3 bits (198), Expect = 3e-18
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+V P G G + G + + I I + A G L+ GD ++AING
Sbjct: 17 TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75
Query: 636 QVCHDLTHLEAISLFKT 652
D T EA L +
Sbjct: 76 IPTEDSTFEEANQLLRD 92
Score = 66.4 bits (162), Expect = 2e-13
Identities = 18/100 (18%), Positives = 41/100 (41%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
S + +T V D GI + ++E ++++I + AE+ G
Sbjct: 4 GSSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGV 63
Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
L++GD ++++NG T +A ++ + + +
Sbjct: 64 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 79.3 bits (196), Expect = 3e-18
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
HT+ +K + GF I + + ++ G A G+L GD+IL +N +
Sbjct: 10 HTVKIDKDTLLQDYGFHISESL-------PLTVVAVTAGGSA--HGKLFPGDQILQMNNE 60
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
DL+ A+ + + ++ S+S+ + R S
Sbjct: 61 PAEDLSWERAVDILREAED-SLSITVVRCTSSGP 93
Score = 50.8 bits (122), Expect = 3e-08
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
S S + V++++ ++ G +I ++ VVA + +GG A G L G
Sbjct: 2 SSGSSGVRHTVKIDKDTLLQDYGFHI-------SESLPLTVVA-VTAGGSAH--GKLFPG 51
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
D+I+ +N + L+ +A I+ ++ + + R +
Sbjct: 52 DQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT 89
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 79.9 bits (197), Expect = 3e-18
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE-DGRLKEGDEILAING 635
I + GF + GG D + + + + A RL EGD+++ ING
Sbjct: 17 VLIRMKPDENG-RFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLING 72
Query: 636 QVCHDLTHLEAISLFKT---IKNGSISLHICRRLKSKKT 671
+ + TH + + K +G + L +
Sbjct: 73 RDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVV 111
Score = 58.0 bits (140), Expect = 2e-10
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
S SS N + ++R+ + D N G +K + + +V+ + G A+
Sbjct: 2 SSGSSGNGGIPHDNLVLIRM-KPDENGRFGF---NVKGGYDQKMP-VIVSRVAPGTPADL 56
Query: 434 -EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP----LNMDLLISRTSLKKSNAE 485
L GD+++ +NG+ + T Q I + + LL+ ++ E
Sbjct: 57 CVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEE 113
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 78.9 bits (195), Expect = 3e-18
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
P +PR +V +KG G GF + G + G IK I A G LK
Sbjct: 3 PHQPR-------VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LK 48
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
D ++A+NG+ L H + + I+ G +L + +
Sbjct: 49 NNDLVVAVNGKSVEALDHDGVVEM---IRKGGDQTTLLVLDK 87
Score = 45.0 bits (107), Expect = 3e-06
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
G ++ I G AE G L+ D +++VNG+ + L +I G LL+
Sbjct: 29 KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 84
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 79.0 bits (195), Expect = 4e-18
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKD---------SPRGAIGIFIKSILDNGQAAEDGRLKEG 627
+ K G GF + G A + ++L G A G +++G
Sbjct: 8 RVVRIVKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKG 64
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
D IL +NG TH + + L + + + L +
Sbjct: 65 DRILEVNGVNVEGATHKQVVDLIRAGEK-ELILTVLSV 101
Score = 50.1 bits (120), Expect = 7e-08
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 412 SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMD 471
+ E V+ ++ GG A++ G + GD I+ VNG + G T Q +I +G +
Sbjct: 37 NGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELI 95
Query: 472 LLISR 476
L +
Sbjct: 96 LTVLS 100
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 79.1 bits (195), Expect = 5e-18
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE-DGRLKEGDEILAING 635
I + GF + GG D + + + + A RL EGD+++ ING
Sbjct: 19 VLIRMKPDENG-RFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 74
Query: 636 QVCHDLTHLEAISLFKT 652
+ + TH + + K
Sbjct: 75 RDIAEHTHDQVVLFIKA 91
Score = 57.5 bits (139), Expect = 2e-10
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK- 433
E + N + ++R+ + D N G + +V+ + G A+
Sbjct: 5 EKPTPNGGIPHDNLVLIRM-KPDENGRFGFNVK----GGYDQKMPVIVSRVAPGTPADLC 59
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
L GD+++ +NG+ + T Q I + +
Sbjct: 60 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 78.2 bits (193), Expect = 7e-18
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
I K LG TI + + I + I+ G A G + GDE+ +NG
Sbjct: 7 IIRLVKNRE--PLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHVGDELREVNGIP 60
Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
D E I + + G+I+ I
Sbjct: 61 VEDKRPEEIIQILAQSQ-GAITFKI 84
Score = 62.4 bits (152), Expect = 3e-12
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
++R+ + E LG I K + + G +VA I+ GG A++ G + +GDE+ VNG
Sbjct: 6 KIIRLVKN--REPLGATIKKDEQT-----GAIIVARIMRGGAADRSGLIHVGDELREVNG 58
Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLI 474
+ + I++ + I
Sbjct: 59 IPVEDKRPEEIIQILAQSQGAITFKI 84
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 77.8 bits (192), Expect = 8e-18
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
+ + GFTI GIF+ S+ + G AE +L+ DEI+AIN
Sbjct: 8 SINQTPGKSLDFGFTIKWDIP------GIFVASV-EAGSPAEFSQLQVDDEIIAINNTKF 60
Query: 639 HDLTHLEAISLFK-TIKNGSISLHICR 664
E + G + + + R
Sbjct: 61 SYNDSKEWEEAMAKAQETGHLVMDVRR 87
Score = 54.0 bits (130), Expect = 2e-09
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 414 EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLL 473
+ +I G VA + +G AE L++ DEII++N + + + ++ L+
Sbjct: 24 KWDIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLV 82
Query: 474 I 474
+
Sbjct: 83 M 83
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 82.9 bits (204), Expect = 8e-18
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 559 STNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQA 618
+ P+ P + + + K GLG +I GG+++ + I I I A
Sbjct: 61 AEPGAAPPQLPEALLLQRRRVTVRKADAG-GLGISIKGGRENK---MPILISKIFKGLAA 116
Query: 619 AEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ L GD IL++NG+ TH EA+ K + +
Sbjct: 117 DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 163
Score = 55.5 bits (133), Expect = 1e-08
Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 5/146 (3%)
Query: 359 PAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG 418
+ + E + E + V V + D LGI I + +
Sbjct: 49 GPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKAD-AGGLGISIKGGRENKMP--- 104
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
+++ I G A++ L +GD I+SVNG+ L T +A + + L +
Sbjct: 105 -ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 163
Query: 479 LKKSNAENEYNESHSREKKSKETRFS 504
+N + +
Sbjct: 164 EVSPYFKNSAGGTSVGWDSPPASPLQ 189
Score = 32.4 bits (73), Expect = 0.40
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
L V + +P +++ +GQ A R K+ + G +
Sbjct: 209 SLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAI 257
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 78.3 bits (193), Expect = 8e-18
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+I F G LGFT+ G + + + A+ G +EGD I++I
Sbjct: 26 SIRFTAEEG--DLGFTLRGNA-------PVQVHFLDPYCSASVAG-AREGDYIVSIQLVD 75
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
C LT E + L K+ I + + L
Sbjct: 76 CKWLTLSEVMKLLKSFGEDEIEMKVVSLLDE 106
Score = 43.6 bits (103), Expect = 1e-05
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLI 474
V + A G GD I+S+ + LT+++ ++ S G +++ +
Sbjct: 47 QVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 77.8 bits (192), Expect = 1e-17
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
+PR + EKGP +G GF + K G G F+ + A + G ++ G
Sbjct: 3 KPR-------CLHLEKGP--QGFGFLLREEK-GLDGRPGQFLWEVDPGLPAKKAG-MQAG 51
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
D ++A+ G+ L H E +S I+ +SL +
Sbjct: 52 DRLVAVAGESVEGLGHEETVSR---IQGQGSCVSLTVVDP 88
Score = 48.1 bits (115), Expect = 2e-07
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
+ + + + G + + K G + + G A+K G ++ GD +++V G+
Sbjct: 7 LHLEKG--PQGFGFLLREEKGLDGRP--GQFLWEVDPGLPAKKAG-MQAGDRLVAVAGES 61
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
+ GL + S I + L +
Sbjct: 62 VEGLGHEETVSRIQGQGSCVSLTVVD 87
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 76.9 bits (190), Expect = 2e-17
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
RPR KGP +G GF + K P G +I+S+ AA G L+
Sbjct: 4 RPR-------LCHLRKGP--QGYGFNLHSDKSRP----GQYIRSVDPGSPAARSG-LRAQ 49
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
D ++ +NGQ L H E ++ IK L +
Sbjct: 50 DRLIEVNGQNVEGLRHAEVVAS---IKAREDEARLLVVGP 86
Score = 49.2 bits (118), Expect = 1e-07
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
+ + + + G + K+ G + + G A + G L D +I VNGQ
Sbjct: 7 LCHLRKGP--QGYGFNLHSDKSR-----PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQ 58
Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
+ GL + + I + LL+
Sbjct: 59 NVEGLRHAEVVASIKAREDEARLLVVG 85
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 77.0 bits (190), Expect = 2e-17
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
RPR +KGP G GF + K P G FI+S+ + A G L+
Sbjct: 9 RPR-------LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQ 54
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
D I+ +NG H + +S I+ G L + R
Sbjct: 55 DRIVEVNGVCMEGKQHGDVVSA---IRAGGDETKLLVVDR 91
Score = 49.3 bits (118), Expect = 1e-07
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
+ + G + K+ G + + AE G L D I+ VNG
Sbjct: 13 CTMKKGP--SGYGFNLHSDKSK-----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64
Query: 451 LRGLTMTQAKSIISSGPLNMDLLI 474
+ G S I +G LL+
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLV 88
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 77.5 bits (191), Expect = 2e-17
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRG 603
S+GS +E + S + + EK LG T+ D
Sbjct: 2 SSGSSGPITDERVYESIGHYG-GETVK-------IVRIEKARDI-PLGATVRNEMD---- 48
Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHIC 663
+ I I+ G A + G L EGDE+L ING E L + G+++ +
Sbjct: 49 --SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLI 105
Query: 664 RR 665
Sbjct: 106 PS 107
Score = 68.2 bits (167), Expect = 4e-14
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 369 SMMEISELSSENSEDSQEGQTMVRVN-RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVS 427
S I++ S G+T+ V + + LG + + +++ IV
Sbjct: 5 SSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-------RNEMDSVIISRIVK 57
Query: 428 GGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKS 482
GG AEK G L GDE++ +NG +RG + + ++S + ++ +S S
Sbjct: 58 GGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGPSS 112
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 76.4 bits (188), Expect = 5e-17
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
R+ R + + +KG LG +IV G+ GI++ + A + G L+
Sbjct: 10 RRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEKG-----GIYVSKVTVGSIAHQAG-LE 61
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
GD++L NG T +A + + +I++
Sbjct: 62 YGDQLLEFNGINLRSATEQQARLIIGQQCD-TITILAQYN 100
Score = 55.6 bits (134), Expect = 1e-09
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 374 SELSSENSEDSQEGQT-MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAE 432
S + + V+V + E LGI I G GG V+ + G +A
Sbjct: 5 SSGGERRKDRPYVEEPRHVKVQKGS--EPLGISIVS------GEKGGIYVSKVTVGSIAH 56
Query: 433 KEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
+ G LE GD+++ NG LR T QA+ II + +L
Sbjct: 57 QAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQY 99
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 75.3 bits (186), Expect = 5e-17
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 22/99 (22%)
Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
R R ++ +G G GFT+ G + ++ A G L+ G
Sbjct: 2 RVR-------SVEVARGRA--GYGFTLSGQA-------PCVLSCVMRGSPADFVG-LRAG 44
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICR 664
D+ILA+N +H + + L I + + I
Sbjct: 45 DQILAVNEINVKKASHEDVVKL---IGKCSGVLHMVIAE 80
Score = 48.4 bits (116), Expect = 1e-07
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
V++ ++ G A+ G L GD+I++VN ++ + +I + ++I+
Sbjct: 24 PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 75.6 bits (186), Expect = 8e-17
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
TI KGP KG GF I G +K ILD+ L++GD I I
Sbjct: 13 LVTIPLIKGP--KGFGFAIADS------PTGQKVKMILDSQWC---QGLQKGDIIKEIYH 61
Query: 636 QVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
Q +LTHL+ + + K G+ + L I R
Sbjct: 62 QNVQNLTHLQVVEVLKQFPVGADVPLLILRG 92
Score = 42.1 bits (99), Expect = 5e-05
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
G IA + G V I+ L+ GD I + Q ++ LT Q
Sbjct: 25 FGFAIA-------DSPTGQKVKMILDSQWC---QGLQKGDIIKEIYHQNVQNLTHLQVVE 74
Query: 462 IISSGPLN--MDLLISRTS 478
++ P+ + LLI R
Sbjct: 75 VLKQFPVGADVPLLILRGG 93
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 74.3 bits (183), Expect = 1e-16
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
R R I +G G GFTI + ++++ G A G L++
Sbjct: 3 RYR-------QITIPRGKD--GFGFTICCDS-------PVRVQAVDSGGPAERAG-LQQL 45
Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
D +L +N + +E ++ + I L + R +
Sbjct: 46 DTVLQLNERPVEHWKCVELAHEIRSCPS-EIILLVWRMVPQ 85
Score = 48.1 bits (115), Expect = 2e-07
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
V + SGG AE+ G L+ D ++ +N + + + I S P + LL+ R
Sbjct: 25 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM 82
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 76.4 bits (188), Expect = 2e-16
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
PR ++ K +G + + GIF++ + N A+ G L+
Sbjct: 2 AMDPR-------EVILCKDQDG-KIGLRLKSIDN------GIFVQLVQANSPASLVG-LR 46
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
GD++L ING+ C + +A + K I++ I
Sbjct: 47 FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD 85
Score = 54.1 bits (130), Expect = 1e-08
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT 455
+D + ++G+ + I G V + + A G L GD+++ +NG+ G +
Sbjct: 12 KDQDGKIGLRLKSID-------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWS 63
Query: 456 MTQAKSII 463
+A ++
Sbjct: 64 SDKAHKVL 71
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
F + +GF GK + SI+ + AA +G L I I
Sbjct: 86 RPFERTITMHKDSTGHVGFIFKNGKIT----------SIVKDSSAARNG-LLTEHNICEI 134
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHIC 663
NGQ L + + T +++ I
Sbjct: 135 NGQNVIGLKDSQIADILST-SGTVVTITIM 163
Score = 43.7 bits (103), Expect = 4e-05
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEI 443
Q + + RD E I + K G + IV A + G L I
Sbjct: 73 QAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNI 131
Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
+NGQ + GL +Q I+S+ + + I
Sbjct: 132 CEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 73.5 bits (181), Expect = 3e-16
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
+P+ KG G GF + + P G FIK + G A G L++
Sbjct: 2 MKPK-------LCRLAKGEN--GYGFHLNAIRGLP----GSFIKEVQKGGPADLAG-LED 47
Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
D I+ +NG D + + + I++ +++L +C +
Sbjct: 48 EDVIIEVNGVNVLDEPYEKVVDR---IQSSGKNVTLLVCGK 85
Score = 46.9 bits (112), Expect = 6e-07
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
R+ + G ++ I+ G + + GG A+ G LE D II VNG
Sbjct: 7 CRLAKG--ENGYGFHLNAIRGLP-----GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVN 58
Query: 451 LRGLTMTQAKSIISSGPLNMDLLI 474
+ + I S N+ LL+
Sbjct: 59 VLDEPYEKVVDRIQSSGKNVTLLV 82
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 73.6 bits (181), Expect = 3e-16
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
I +G G GFTI + ++++ G A G L+
Sbjct: 6 SGEGDPENGEKLQITIRRGKD--GFGFTICCDS-------PVRVQAVDSGGPAERAG-LQ 55
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ D +L +N + +E ++ + I L + R
Sbjct: 56 QLDTVLQLNERPVEHWKCVELAHEIRSCPS-EIILLVWRV 94
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
V + SGG AE+ G L+ D ++ +N + + + I S P + LL+ R S
Sbjct: 37 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95
Query: 479 LKKS 482
S
Sbjct: 96 GPSS 99
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 73.2 bits (180), Expect = 4e-16
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 578 TIVFEKGPGKKGLGFTIVGGK----DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
IV K GF++ + DS + + S+ D A++ L+ GD I I
Sbjct: 5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGS-PAQEAGLRAGDLITHI 61
Query: 634 NGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
NG+ L H++ + L + ISL
Sbjct: 62 NGESVLGLVHMDVVEL---LLKSGNKISLRTTAL 92
Score = 43.2 bits (102), Expect = 1e-05
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 393 VNRRDFNEELGIYIAKIKN---SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
V ++ G + I+ S+ VV + G A++ G L GD I +NG+
Sbjct: 7 VIHSS-GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64
Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
+ GL ++ + L +
Sbjct: 65 SVLGLVHMDVVELLLKSGNKISLRTTA 91
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 73.2 bits (180), Expect = 5e-16
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
+PR K G GF++ + G+++ I G A G +
Sbjct: 6 SGQPR-------LCYLVKEGG--SYGFSLKTVQGKK----GVYMTDITPQGVAMRAG-VL 51
Query: 626 EGDEILAINGQVCHDLTHLEAISLFK 651
D ++ +NG+ D +H E + K
Sbjct: 52 ADDHLIEVNGENVEDASHEEVVEKVK 77
Score = 49.3 bits (118), Expect = 1e-07
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
G + ++ G + I G+A + G + D +I VNG+ + + +
Sbjct: 18 GGSYGFSLKTVQGK-----KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEE 71
Query: 459 AKSIISSGPLNMDLLISR 476
+ + L+
Sbjct: 72 VVEKVKKSGSRVMFLLVD 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.9 bits (199), Expect = 8e-16
Identities = 109/687 (15%), Positives = 187/687 (27%), Gaps = 289/687 (42%)
Query: 14 YTSHIRQSSSTKQKALLAEKRNPLLEKVKNTKLTCF-----KANNIYSNVNN--GIIDST 66
Y S + + S Q + +L LT F + N+I++ D+T
Sbjct: 67 YVSSLVEPSKVGQ-------FDQVLNLC----LTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 67 SLTDKSI------SVDCLNESITESDTSTLFKRSKSNDNVIYSHTSNDENEWGPSNAKDN 120
+ K + + + S LF+ + + + +G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-------IFG------G 162
Query: 121 QDQWPSRDATGDKNTCIDRIKAISDKY--------FKSNKIIVKLYSNNKKSTTRRQRSF 172
Q G+ + + ++ + Y S + + +L + +
Sbjct: 163 Q---------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 173 SFGALPGLDNLKDNPLYNEEEDYDDSDSGIVNSSTNS----SVVD-DHYDFRATRKENCR 227
+ L+N + P ++DY + S S V+ HY T +
Sbjct: 214 NILEW--LENPSNTP----DKDY-------LLSIPISCPLIGVIQLAHY--VVT----AK 254
Query: 228 RLSFDRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSASKCDSPTISTRSTVTSN 287
L F ++ S Q L+ +A I+ ++
Sbjct: 255 LLGFTPGEL---------RSYLKGATGHS--QGLV------TAV-----AIA-----ETD 287
Query: 288 SEKPSFLDKFRNSPSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFN 347
S SF R + + F I G R E Y PN
Sbjct: 288 SW-ESFFVSVRKAITVL-------FFI---GV-------RCY------EAY----PNTSL 319
Query: 348 RNSGSQSLLE----IPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELG 403
S + LE +P+ M+ IS L+ E +D VN+ N L
Sbjct: 320 PPSILEDSLENNEGVPSP--------MLSISNLTQEQVQD--------YVNK--TNSHLP 361
Query: 404 ----IYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
+ I+ + N ++ N VV+ G + S L GL
Sbjct: 362 AGKQVEIS-LVNGAK-N---LVVS-----GPPQ------------S-----LYGL----- 389
Query: 460 KSIISSGPLNMDLLISRTSLKKSNAENEYNES---HSREKKSKETRFSLDKQNDFESSNE 516
+L+K+ A + ++S S K RF
Sbjct: 390 ----------------NLTLRKAKAPSGLDQSRIPFSERKLKFSNRF------------- 420
Query: 517 QDKNNQKRL-----FQKNCHSINNKLLRKAIISTGSISGD-EEETILTSTN------FCT 564
L F HS LL A + I+ D + + + + T
Sbjct: 421 --------LPVASPF----HS---HLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 565 ------------LPRRPRSAICTF-------------HTIVFEKGPGK-KGLGF---TIV 595
+ R I H + F GPG GLG
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF--GPGGASGLGVLTHRNK 520
Query: 596 GGKDSPRGAIGIFIKSILDNGQAAEDG 622
G G + + + LD + G
Sbjct: 521 DG----TG-VRVIVAGTLDINPDDDYG 542
Score = 44.3 bits (104), Expect = 2e-04
Identities = 44/247 (17%), Positives = 75/247 (30%), Gaps = 93/247 (37%)
Query: 313 Q-IQSYG-----YDSPILSSRSQN-----SSMISEKYNLDVPNIFNRN-------SGSQS 354
Q Q G Y + S +Q+ + + Y + +I N G +
Sbjct: 1624 QGSQEQGMGMDLYKT---SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 355 LLEIPAYQNSSDYHSMM----------------EISELSSENSEDSQEG---QT------ 389
I +N Y +M+ EI+E S+ + S++G T
Sbjct: 1681 GKRI--REN---YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNI-GGFVVA-HIVSGG----LAEKEGCLELGDEI 443
+ + E + +K S+G I A H S G LA + + +
Sbjct: 1736 LTLM-------EKAAF-EDLK--SKGLIPADATFAGH--SLGEYAALASLADVMSIESLV 1783
Query: 444 ISVNGQRLRGLTMTQA----------KSIISSGPLNMDLLISRTSLKK-----SNAENE- 487
V RG+TM A +I+ P + S+ +L+
Sbjct: 1784 EVV---FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 488 -----YN 489
YN
Sbjct: 1841 VEIVNYN 1847
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 71.6 bits (176), Expect = 1e-15
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGK----DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
+ EKG + GF I + R + F+ + ++ A G L GD I +
Sbjct: 6 KVLTLEKGDNQ-TFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIAS 63
Query: 633 INGQVCHDLTHLEAISLFKTIKNG--SISLHICR 664
+NG + H E + + IK + L
Sbjct: 64 VNGLNVEGIRHREIVDI---IKASGNVLRLETLY 94
Score = 49.3 bits (118), Expect = 9e-08
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 391 VRVNRRDFNEELGIYIAKIK----NSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
+ + + D N+ G I + FV A + A+ G L GD I SV
Sbjct: 8 LTLEKGD-NQTFGFEIQTYGLHHREEQRVEMVTFV-ARVHESSPAQLAG-LTPGDTIASV 64
Query: 447 NGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
NG + G+ + II + + L +
Sbjct: 65 NGLNVEGIRHREIVDIIKASGNVLRLETLYGT 96
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 72.6 bits (178), Expect = 2e-15
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
RPR +KGP G GF + K P G FI+S+ + A G L+
Sbjct: 7 MLRPR-------LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LR 52
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
D I+ +NG H + +S + + L + R
Sbjct: 53 AQDRIVEVNGVCMEGKQHGDVVSAIRAGGD-ETKLLVVDR 91
Score = 42.5 bits (100), Expect = 4e-05
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
+ + G + K+ G + + AE G L D I+ VNG
Sbjct: 13 CTMKKGP--SGYGFNLHSDKSK-----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
+ G S I +G LL+
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVD 90
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 70.8 bits (174), Expect = 2e-15
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
++ +K G GFT+ G + + ++S+ G A + G +KEGD I+ +NG +
Sbjct: 11 CVIIQKDQ--HGFGFTVSGDR-------IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTM 60
Query: 638 CHDLTHLEAISLFKTIKNGS-ISLHICRR 665
+ +HLE + L IK+G+ ++L +
Sbjct: 61 VTNSSHLEVVKL---IKSGAYVALTLLGS 86
Score = 50.0 bits (120), Expect = 6e-08
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
+V + GG A K G ++ GD II VNG + + + +I SG L+ +S
Sbjct: 30 IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88
Query: 479 LKKS 482
S
Sbjct: 89 GPSS 92
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 70.9 bits (174), Expect = 3e-15
Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
I FEK + +G + + + IL G G L GDEIL IN
Sbjct: 12 MVRLIQFEKVTEE-PMGICLKLNEKQS-----CTVARILHGGMIHRQGSLHVGDEILEIN 65
Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICR 664
G + + + K K G ISL +
Sbjct: 66 GTNVTNHSVDQLQKAMKETK-GMISLKVIP 94
Score = 68.9 bits (169), Expect = 1e-14
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 376 LSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEG 435
+ + S +++ + E +GI + VA I+ GG+ ++G
Sbjct: 1 MGHHHHHHSGHMVRLIQFEKVT-EEPMGICL------KLNEKQSCTVARILHGGMIHRQG 53
Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
L +GDEI+ +NG + ++ Q + + + L +
Sbjct: 54 SLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 69.7 bits (171), Expect = 5e-15
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ F+K + +G T+ + + + I+ G G L GDEI ING
Sbjct: 4 LVQFQKNTDE-PMGITLKMNELN-----HCIVARIMHGGMIHRQGTLHVGDEIREINGIS 57
Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
+ T + + + ++ GSI+ I
Sbjct: 58 VANQTVEQLQKMLREMR-GSITFKI 81
Score = 61.2 bits (149), Expect = 4e-12
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
+V+ + +E +GI + + +VA I+ GG+ ++G L +GDEI +NG
Sbjct: 4 LVQFQKNT-DEPMGITL------KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGI 56
Query: 450 RLRGLTMTQAKSIISSGPLNMDLLI 474
+ T+ Q + ++ ++ I
Sbjct: 57 SVANQTVEQLQKMLREMRGSITFKI 81
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 70.6 bits (173), Expect = 5e-15
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
PR I F G LGFT+ G + + + + A+ G KE
Sbjct: 14 SPPR-------GIHFTVEEG--DLGFTLRGNT-------PVQVHFLDPHCSASLAG-AKE 56
Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
GD I++I G C LT E + L K+ + + + L S +
Sbjct: 57 GDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSS 101
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISR 476
V + A G + GD I+S+ G + LT+++ ++ S G +++ +
Sbjct: 36 TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94
Query: 477 TSLKKSNAENE 487
S+ N+
Sbjct: 95 LLDSTSSMHNK 105
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 70.1 bits (172), Expect = 7e-15
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
+V +KG G GF + G + G IK I A G LK D ++A+NG+
Sbjct: 8 RVVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK 60
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
L H + + I+ G +
Sbjct: 61 SVEALDHDGVVEM---IRKGGDQTTL 83
Score = 43.9 bits (104), Expect = 9e-06
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
G ++ I G AE G L+ D +++VNG+ + L +I G LL+
Sbjct: 30 KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 66.9 bits (163), Expect = 6e-14
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 577 HTIVFEKGPG-KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
H+I EK GF++ ++ +++ S+ + G A++ G LK GDEIL IN
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIR--RLYVNSVKETGLASKKG-LKAGDEILEINN 64
Query: 636 QVCHDLTHLEAISLFK 651
+ L
Sbjct: 65 RAADALNSSMLKDFLS 80
Score = 50.0 bits (119), Expect = 6e-08
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 409 IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468
+ + E I V + GLA K+G L+ GDEI+ +N + L + K +S L
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSL 84
Query: 469 NM 470
+
Sbjct: 85 GL 86
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 67.1 bits (164), Expect = 7e-14
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGK----DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
+ EK + GF I + ++ + I I ++ A G L+ GD +
Sbjct: 17 KLVTVEKQDNE-TFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLAN 74
Query: 633 INGQVCHDLTHLEAISLFK 651
ING T+ + + L +
Sbjct: 75 INGVSTEGFTYKQVVDLIR 93
Score = 52.5 bits (126), Expect = 8e-09
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKN---SSEGNIGGFVVAHIVSGGLAEK 433
SS S+ S + +V V ++D NE G I + ++ + ++ I A
Sbjct: 5 SSGLSDFSWSQRKLVTVEKQD-NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHC 63
Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
G L+ GD + ++NG G T Q +I S + +
Sbjct: 64 AG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 66.8 bits (163), Expect = 1e-13
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Query: 578 TIVFEKGPGKKGLGFTIVGGK---------DSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
T++ +K + G GF + G K +P +++S+ + G A G L+ GD
Sbjct: 10 TVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGD 67
Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRRLK 667
++ +NGQ + H + +++ I+ G ++ + + +
Sbjct: 68 FLIEVNGQNVVKVGHRQVVNM---IRQGGNTLMVKVVMVTR 105
Score = 45.2 bits (107), Expect = 4e-06
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIG--------GFVVAHIVSGGLAEKEGCLELGDE 442
V + ++D +E G + K + + + GG+A + G L +GD
Sbjct: 11 VLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 68
Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
+I VNGQ + + Q ++I G + + + +
Sbjct: 69 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 65.8 bits (160), Expect = 2e-13
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 577 HTIVFEKGPG-KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
+I EK GF++ ++ G +++ S+ + G A++ G LK GDEIL IN
Sbjct: 17 QSIHIEKSDTAADTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKG-LKAGDEILEINN 73
Query: 636 QVCHDLTHLEAISLFK 651
+ L
Sbjct: 74 RAADALNSSMLKDFLS 89
Score = 54.3 bits (130), Expect = 3e-09
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 374 SELSSENSEDSQEGQTMVRVNRRD-FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAE 432
S SS E + + + + D + G ++ ++ E I V + GLA
Sbjct: 2 SSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVE---EDGIRRLYVNSVKETGLAS 58
Query: 433 KEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDL 472
K+G L+ GDEI+ +N + L + K +S L + +
Sbjct: 59 KKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLV 97
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 65.5 bits (160), Expect = 3e-13
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
K G+ GF + KD+ G I+ I + A + G L +GD +L ING
Sbjct: 3 RESKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LLDGDRVLRINGV 56
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
H + + L + N S++L +
Sbjct: 57 FVDKEEHAQVVELVRKSGN-SVTLLVLDG 84
Score = 49.4 bits (118), Expect = 1e-07
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
++++++ + G ++ E + G ++ I G AEK G L GD ++ +NG
Sbjct: 5 SKLSKQE-GQNYGFFL-----RIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVF 57
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
+ Q ++ ++ LL+
Sbjct: 58 VDKEEHAQVVELVRKSGNSVTLLVLD 83
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 65.6 bits (160), Expect = 3e-13
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
PR K G+ GF + KD+ G I+ I + A + G L
Sbjct: 11 TFNPR-------ECKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LL 57
Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+GD +L ING H + + L + N S++L +
Sbjct: 58 DGDRVLRINGVFVDKEEHAQVVELVRKSGN-SVTLLVLDG 96
Score = 51.7 bits (124), Expect = 2e-08
Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 377 SSENSEDSQEGQT-MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEG 435
SS +S + ++++++ + G ++ E + G ++ I G AEK G
Sbjct: 2 SSGSSGMASTFNPRECKLSKQE-GQNYGFFL-----RIEKDTDGHLIRVIEEGSPAEKAG 55
Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENE 487
L GD ++ +NG + Q ++ ++ LL+ + +N+
Sbjct: 56 -LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQ 106
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 65.0 bits (158), Expect = 7e-13
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 20/125 (16%)
Query: 559 STNFCTLPRRPRSAICTF----HTIVFEKGPGKKGLGFTIVGGK---------DSPRGAI 605
+ P PR + + T++ +K + G GF + G K +P
Sbjct: 7 HHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPA 65
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHIC 663
+++S+ + G A G L+ GD ++ +NGQ + H + +++ I+ G ++ + +
Sbjct: 66 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNM---IRQGGNTLMVKVV 121
Query: 664 RRLKS 668
+
Sbjct: 122 MVTRH 126
Score = 46.1 bits (109), Expect = 3e-06
Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 363 NSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGF-- 420
+S +H + + + D + V + ++D +E G + K +
Sbjct: 3 SSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTP 61
Query: 421 ------VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
+ + GG+A + G L +GD +I VNGQ + + Q ++I G + + +
Sbjct: 62 AFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120
Query: 475 SRTS 478
+
Sbjct: 121 VMVT 124
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 63.8 bits (155), Expect = 2e-12
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 40/127 (31%)
Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP------------------------ 601
P+ T+ ++ +G GFT+ P
Sbjct: 6 SGGPK-------TVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNR 56
Query: 602 -RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG--SI 658
IF+K + + G A E G L GD I+ +NG+ T+ + I+L I+N ++
Sbjct: 57 LEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIAL---IQNSDTTL 112
Query: 659 SLHICRR 665
L + +
Sbjct: 113 ELSVMPK 119
Score = 44.9 bits (106), Expect = 7e-06
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
EE G K +N E FV + GG A + G L GD II VNG+ + G T +Q
Sbjct: 44 EENGNRGGKQRNRLEPMDTIFV-KQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQV 101
Query: 460 KSIISSGPLNMDLLISR 476
++I + ++L +
Sbjct: 102 IALIQNSDTTLELSVMP 118
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 65.3 bits (158), Expect = 2e-12
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 588 KGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLT 642
LGF+I GG GIF+ + G A L+ GD+I+ NG ++
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIE 59
Query: 643 HLEAISLFKTIKNGSISLHICRR 665
H +A+SL KT +N ++ L I R
Sbjct: 60 HGQAVSLLKTFQN-TVELIIVRE 81
Score = 45.3 bits (106), Expect = 2e-05
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 17/164 (10%)
Query: 399 NEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
+ ELG I+ N + G V + G A L+ GD+II NG +
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 58
Query: 455 TMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESS 514
QA S++ + ++L+I R N + + +
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVRE------VGNGAKQEIRVRVEKDGGSGGVSSVPTNLEV 112
Query: 515 NEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILT 558
+ + + + + I+ G G+ T
Sbjct: 113 VAATPTSLLISWDASYYGV-----SYYRITYGETGGNSPVQEFT 151
Score = 32.6 bits (73), Expect = 0.24
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDE-ILAINGQ-VCHDLT 642
G+ + + G + ++ + A LK G + + + +
Sbjct: 126 ASYYGVSYYRIT-YGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSH 184
Query: 643 HLEAISLFKT 652
H IS+
Sbjct: 185 HYSPISINYR 194
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 65.2 bits (158), Expect = 4e-12
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
RPR +KGP G GF + K P G FI+S+ + A G L+
Sbjct: 8 LRPR-------LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRA 53
Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
D I+ +NG H + +S + + L + R
Sbjct: 54 QDRIVEVNGVCMEGKQHGDVVSAIRAGGD-ETKLLVVDR 91
Score = 40.9 bits (95), Expect = 6e-04
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 3/106 (2%)
Query: 412 SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMD 471
S+ + G + + AE G L D I+ VNG + G S I +G
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK 85
Query: 472 LLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQ 517
LL+ + + S+E + + ++ +
Sbjct: 86 LLV--VDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSRE 129
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 61.3 bits (149), Expect = 6e-12
Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
+ + K G+ LG T + I IL G A+ G L GD I +N
Sbjct: 6 SGRMVGIRKTAGE-HLGVTFRVEGG------ELVIARILHGGMVAQQGLLHVGDIIKEVN 58
Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
GQ L + GS+ L I S
Sbjct: 59 GQPVGS-DPRALQELLRNAS-GSVILKILSGPSS 90
Score = 51.7 bits (124), Expect = 1e-08
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
S MV + + E LG+ G V+A I+ GG+ ++G L +GD I
Sbjct: 3 SGSSGRMVGIRKTA-GEHLGVTFR-------VEGGELVIARILHGGMVAQQGLLHVGDII 54
Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
VNGQ + G + ++ + ++ L I
Sbjct: 55 KEVNGQPV-GSDPRALQELLRNASGSVILKILS 86
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 65.8 bits (159), Expect = 1e-11
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 583 KGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLT 642
+ + LG +V + + ++++ G AA G+L GD+I++ING L
Sbjct: 211 EKHKGEILGVVVVESGWGSILP-TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269
Query: 643 HLEAISLFKTIKNGS 657
+ K +KN +
Sbjct: 270 LATCQGIIKGLKNQT 284
Score = 58.8 bits (141), Expect = 2e-09
Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 19/133 (14%)
Query: 532 SINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLG 591
SIN L + I+ T + + T++ ++ K LG
Sbjct: 259 SINGTSLVGL-------PLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLG 311
Query: 592 FTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK 651
F++ G I S++ G AE G ++ G I+ INGQ H + +
Sbjct: 312 FSVQNG----------IICSLMRGG-IAERGGVRVGHRIIEINGQSVVATAHEKIVQALS 360
Query: 652 TIKNGSISLHICR 664
G I +
Sbjct: 361 NSV-GEIHMKTMP 372
Score = 53.1 bits (126), Expect = 2e-07
Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 12/217 (5%)
Query: 251 SLQTCSSPQSLLLPTLECSASKCDSPTIS----TRSTVTSNSEKPSFLDKFRNSPSKSEN 306
L + +L + + TIS + V + + ++ +
Sbjct: 69 DLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPG 128
Query: 307 GQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSD 366
Q Q + + + S S V + + ++ + S
Sbjct: 129 AQEGKKQYKMICH---VFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDI 185
Query: 367 YHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIV 426
++ ++ S + + ++ E LG+ + + S ++A+++
Sbjct: 186 INTQEMYNDDLIHFSNSENCKELQLEKHK---GEILGVVVVESGWGSIL--PTVILANMM 240
Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
+GG A + G L +GD+I+S+NG L GL + + II
Sbjct: 241 NGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 277
Score = 53.1 bits (126), Expect = 2e-07
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
+ Q + + + I +K ++ ++ ++ GG+AE+ G + +G I
Sbjct: 281 KNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRI 339
Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
I +NGQ + + +S+ + + +
Sbjct: 340 IEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAA 374
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 65.6 bits (159), Expect = 2e-11
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
+ F KG +G + GG D GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 12 LVKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVD 62
Query: 638 CHDLTHLEAISLFKTIKNG 656
++ EA+ + G
Sbjct: 63 FTNIIREEAVLFLLDLPKG 81
Score = 57.1 bits (137), Expect = 7e-09
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 382 EDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGD 441
+ +V+ + + +G+ +A GN G VA ++ A KEG LE GD
Sbjct: 4 MILRPSMKLVKFRK---GDSVGLRLAG------GNDVGIFVAGVLEDSPAAKEG-LEEGD 53
Query: 442 EIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKET 501
+I+ VN + +A + P ++ I K + ES + T
Sbjct: 54 QILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK--KKDVYRRIVESDVGDSFYIRT 111
Query: 502 RFSLDKQND 510
F +K++
Sbjct: 112 HFEYEKESP 120
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 56.5 bits (137), Expect = 2e-10
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
TI K +GF GK I SI+ + AA +G L I INGQ
Sbjct: 6 RTITMHKDS-TGHVGFIFKNGK----------ITSIVKDSSAARNG-LLTEHNICEINGQ 53
Query: 637 VCHDLTHLEAISLFKT 652
L + + T
Sbjct: 54 NVIGLKDSQIADILST 69
Score = 48.8 bits (117), Expect = 1e-07
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 410 KNSSEG---NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG 466
K+S+ + IV A + G L I +NGQ + GL +Q I+S+
Sbjct: 12 KDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS 70
Query: 467 PLNMDLLI 474
+ + I
Sbjct: 71 GTVVTITI 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 2e-10
Identities = 65/447 (14%), Positives = 134/447 (29%), Gaps = 100/447 (22%)
Query: 193 EDYDDSDSGIVNSSTNSSVVDDHYDF---RATRKENCRRLSFD-----RTQIINKCLRTS 244
+++D D V S + + D RL F + +++ K +
Sbjct: 31 DNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEV 86
Query: 245 CNDSF----SSLQT-CSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRN 299
++ S ++T P + +E + + + V+ + K R
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----RLQPYLKLRQ 142
Query: 300 SPSKSENGQLPNFQIQSY-------GYDSPILSSRSQNSSMISEKYNLDVPNIF-----N 347
+ L + G ++ S + K + IF N
Sbjct: 143 A--------LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KIFWLNLKN 191
Query: 348 RNSGSQSLLEIPA---YQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNR----RDFNE 400
NS +++LE+ YQ ++ S + S Q + R + +
Sbjct: 192 CNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSKPYEN 245
Query: 401 EL----GIYIAKI--------------KNSSEGN-IGGFVVAHIV----SGGLAEKEGCL 437
L + AK + + + HI S L E
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-K 304
Query: 438 ELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKK 497
L + + Q L + + P + + I+ S++ A + + + +K
Sbjct: 305 SLLLKYLDCRPQDLP----REVLTT---NPRRLSI-IAE-SIRDGLATWDNWKHVNCDKL 355
Query: 498 SKETRFSLDKQNDFESSNEQDKNNQKRL--FQKNCHSINNKLLRKAIISTGSISGDEEET 555
+ SL+ E + RL F + H I LL ++I I D
Sbjct: 356 TTIIESSLNVLEPAE-----YRKMFDRLSVFPPSAH-IPTILL--SLIWFDVIKSDVMVV 407
Query: 556 ILTSTNFCTLPRRPRSAICTFHTIVFE 582
+ + + ++P+ + + +I E
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLE 434
Score = 55.6 bits (133), Expect = 5e-08
Identities = 65/465 (13%), Positives = 129/465 (27%), Gaps = 165/465 (35%)
Query: 8 TRSSQYYTSHIRQSSSTKQ---------KALLAEKRNP----LLEKVKNTKLTCFKANNI 54
+ +TS SS+ K + LL K +L V+N K + A N+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAFNL 264
Query: 55 YSNV-----NNGIIDS-TSLTDKSISVDCLNESITESDTSTLFKR---SKSND------- 98
+ + D ++ T IS+D + ++T + +L + + D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 99 ------NVIYSHTSNDENEWGPSNAKDNQDQWPSRDATGDKNTCIDRIKAISDKYFKSNK 152
++I + W D W K+ +K
Sbjct: 325 TNPRRLSIIAESIRDGLATW---------DNW---------------------KHVNCDK 354
Query: 153 I--IVKLYSNNKKSTTRRQRSFSFGALPGLDNLKDNP--------LYNEEEDYDDSDSGI 202
+ I++ N + R+ P ++ + D +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFP-----PSAHIPTILLSLIWFDVIKSDVMV--V 407
Query: 203 VNSSTNSSVVD-----------DHY-DFRATRKENCRRLSFDRTQIINK--CLRTSCNDS 248
VN S+V+ Y + + EN L I++ +T +D
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYAL---HRSIVDHYNIPKTFDSDD 463
Query: 249 FSS--------------LQTCSSPQSL-LLPTLECSASKCDSPTISTRSTVTSNSEKPSF 293
L+ P+ + L + F
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--------------------------F 497
Query: 294 LD------KFRNS-PSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIF 346
LD K R+ + + +G + N Q Y I + + +++ + F
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD------F 551
Query: 347 NRNSGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMV 391
+ S Y ++ I+ L +E+ +E V
Sbjct: 552 LPKIEENLI--------CSKYTDLLRIA-LMAEDEAIFEEAHKQV 587
Score = 39.5 bits (91), Expect = 0.004
Identities = 73/527 (13%), Positives = 141/527 (26%), Gaps = 166/527 (31%)
Query: 215 HYDFRATRKE-NCRRLSFDRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSASKC 273
H DF + + + C D P+S+L S +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNF--DCKD------VQDMPKSIL------SKEEI 51
Query: 274 D----SPTISTRSTVTSNSEKPSFLDKFRNSPSKS-----ENGQLPNFQIQSYGYDSPIL 324
D S + + + + E N Y + +
Sbjct: 52 DHIIMSKDAVSGTLR--------LFWTLLSKQEEMVQKFVEEVLRIN-----YKFLMSPI 98
Query: 325 SSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDS 384
+ + SM++ Y ++N N Q + Y+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDN------------QVFAKYN---------------- 130
Query: 385 QEGQTMVRVNRRDFNEELGIYIAKIKNS-SEGNIGGFVVAHIVSG-G---LAEKEGCLEL 439
V+R + K++ + E V+ V G G +A + CL
Sbjct: 131 --------VSR----LQP---YLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCLS- 173
Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSK 499
++ ++ L + S + L M + + ++++ + S
Sbjct: 174 -YKVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 500 ETRFS-LDKQNDFESS-----NEQDKNNQKRLFQKNC--------HSINNKL---LRKAI 542
+ L K +E+ N Q+ F +C + + L I
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 543 ISTGSISG---DEEETIL---TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVG 596
DE +++L LPR + T + P +I+
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----VLTTN-------P----RRLSIIA 334
Query: 597 G--KDSP----------RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI----------- 633
+D + I+S L+ + AE ++ + L++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE---YRKMFDRLSVFPPSAHIPTIL 391
Query: 634 --------NGQVCHD-LTHLEAISL-FKTIKNGSISLH-ICRRLKSK 669
+ L SL K K +IS+ I LK K
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 56.7 bits (137), Expect = 2e-10
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
T++ + + LGF++ G I S++ G A G ++ G I+ INGQ
Sbjct: 13 TTVLIRRPDLRYQLGFSVQNGI----------ICSLMRGGIAERGG-VRVGHRIIEINGQ 61
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
H + + + G I +
Sbjct: 62 SVVATPHEKIVHILSN-AVGEIHMKT 86
Score = 49.4 bits (118), Expect = 8e-08
Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
+ ++ T V + R D +LG ++ ++ ++ GG+AE+ G + +
Sbjct: 4 HHLETMGNVTTVLIRRPDLRYQLGF-----------SVQNGIICSLMRGGIAERGG-VRV 51
Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
G II +NGQ + + I+S+ + + +
Sbjct: 52 GHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 90
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 62.2 bits (150), Expect = 2e-10
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
+ + F KG +G + GG D GIF+ +L++ AA++G L+EGD+IL +N
Sbjct: 1 SMKLVKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVN 51
Query: 635 GQVCHDLTHLEAISLFKTIKNG 656
++ EA+ + G
Sbjct: 52 NVDFTNIIREEAVLFLLDLPKG 73
Score = 54.9 bits (131), Expect = 5e-08
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
+++ + + +G+ +A GN G VA ++ A KEG LE GD+I+ VN
Sbjct: 2 MKLVKFRKGDSVGLRLAG------GNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVD 54
Query: 451 LRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQND 510
+ +A + L ++ + KK + ES + T F +K++
Sbjct: 55 FTNIIREEAVLFLL--DLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP 112
Query: 511 FESS 514
+ S
Sbjct: 113 YGLS 116
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 43.3 bits (101), Expect = 2e-05
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAED-GRLKEGDEILAINGQ 636
T++ + GF++ S A + +K + + + + GD IL ING
Sbjct: 17 TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76
Query: 637 VCHDLTHLEAISLFK 651
L E K
Sbjct: 77 PVRTLRVEEVEDAIK 91
Score = 35.6 bits (81), Expect = 0.010
Identities = 15/78 (19%), Positives = 24/78 (30%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
G + SS V + GD I+ +NG +R L + +
Sbjct: 26 ECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEE 85
Query: 459 AKSIISSGPLNMDLLISR 476
+ I + LLI
Sbjct: 86 VEDAIKQTSQTLQLLIEH 103
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 39.2 bits (92), Expect = 6e-04
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHICR 664
G+ I ++ A G L+ GD ILAI Q+ + + ++ S +++ I R
Sbjct: 36 GVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVYEA-----VRTQSQLAVQIRR 89
Query: 665 RLKSKK 670
++
Sbjct: 90 GRETLT 95
Score = 36.1 bits (84), Expect = 0.005
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
G M+ ++ EL + + G ++ ++ G A + G L GD I+++
Sbjct: 9 GVMMLTLSP-SILAELQLREPSFPDVQHG----VLIHKVILGSPAHRAG-LRPGDVILAI 62
Query: 447 NGQRLRGLTMTQAKSIISSG-PLNMDLL 473
Q ++ + + L + +
Sbjct: 63 GEQMVQ--NAEDVYEAVRTQSQLAVQIR 88
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 41.5 bits (96), Expect = 7e-04
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 603 GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
G+ + ++ + A G L GD+I+AI+ + + + + ++++H
Sbjct: 494 SPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYIP--GDTVTIHA 550
Query: 663 CRR 665
RR
Sbjct: 551 FRR 553
Score = 36.9 bits (84), Expect = 0.022
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 5/119 (4%)
Query: 341 DVPNIFNRNSGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNE 400
V N N+ G + + + S++E+ + + +
Sbjct: 423 TVINWLNQYPGIDISDFLKDALYNKESLSLVELLQNFGVMVQKQVPVDDNSVGGKASEQP 482
Query: 401 ELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
+ AK K S +G V ++ A G L GD+II+++ + ++ +
Sbjct: 483 ARVNFGAKYKASPQG----LDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRI 536
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 38.7 bits (90), Expect = 8e-04
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
G+ I S++ A L G I +ING +LT A L I++ +
Sbjct: 26 GVQIDSVVPGSPA--SKVLTPGLVIESINGMPTSNLTTYSAA-LKTISVGEVINITTDQ 81
Score = 32.9 bits (75), Expect = 0.10
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
G + +V G A K L G I S+NG +T + + +
Sbjct: 26 GVQIDSVVPGSPASK--VLTPGLVIESINGMPTS--NLTTYSAALKT 68
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 41.1 bits (97), Expect = 0.001
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 414 EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLL 473
GN+ G V + G + GD IIS N + + + ++I + +
Sbjct: 382 HGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQ 438
Query: 474 ISR 476
+ R
Sbjct: 439 VLR 441
Score = 36.1 bits (84), Expect = 0.031
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 582 EKGPGKKGLGFTIVGGKDSPRGAI-GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
P GL + P G + G+ + +N G ++ GD I++ N + D
Sbjct: 362 SNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTD 420
Query: 641 LTHLEAISLFKTIKNGSISLHICRR 665
+ L+ I K + + + R
Sbjct: 421 VKSLQTI---AQEKKKELLVQVLRG 442
Score = 33.8 bits (78), Expect = 0.19
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 601 PRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
P G + + N A G LK GD I IN T +
Sbjct: 278 PEDFQGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQV 320
Score = 32.7 bits (75), Expect = 0.46
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 416 NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
+ G +V+ + AE G L+ GD I +N ++
Sbjct: 280 DFQGALVSQVNPNSPAELAG-LKAGDIITQINDTKIT 315
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 40.8 bits (96), Expect = 0.001
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
+ GI A++ S++G G VV ++ +G A + G L+ GD II N Q ++ + +
Sbjct: 366 SIFNGIEGAEM--SNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAE 420
Query: 459 AKSIISSGPLNMDLLISR 476
+ ++ S P + L I R
Sbjct: 421 LRKVLDSKPSVLALNIQR 438
Score = 36.2 bits (84), Expect = 0.037
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 597 GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
D+ RGA F+ +L N AA+ G +K GD I ++NG+ L A
Sbjct: 281 KVDAQRGA---FVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQ 327
Score = 35.0 bits (81), Expect = 0.078
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
G+ + ++ AA+ G LK+GD I+ N Q ++ L +
Sbjct: 384 GVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRKV 424
Score = 31.9 bits (73), Expect = 0.63
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
G V+ ++ A K G ++ GD I S+NG+ +
Sbjct: 287 GAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS 319
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 37.1 bits (86), Expect = 0.001
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
+E+ Y+ + + + G+ V+ L E G L+ GD +++NG L
Sbjct: 1 QEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVM 57
Query: 460 KSIISS 465
++ S
Sbjct: 58 NTLFQS 63
Score = 32.1 bits (73), Expect = 0.083
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 603 GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLH 661
+G + D G L++GD +A+NG D +LF+++ + +SL
Sbjct: 17 KVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLT 73
Query: 662 ICR 664
+ R
Sbjct: 74 VER 76
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 599 DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL-EAISLFKTIKNGS 657
D P + GI+++ + N + G +++GD I+ +NG+ D + L EA+ +
Sbjct: 29 DFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSSELQEAVLTESPLL--- 84
Query: 658 ISLHICRRLKSKK 670
L + R
Sbjct: 85 --LEVRRGNDDLL 95
Score = 35.4 bits (82), Expect = 0.010
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 402 LGIYIAKI-----------KNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
+GI + I G V + +++ G ++ GD I+ VNG+
Sbjct: 8 IGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRP 66
Query: 451 LRGLTMTQAKSIISSG-PLNMDLL 473
L ++ + + + PL +++
Sbjct: 67 LV--DSSELQEAVLTESPLLLEVR 88
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 37.3 bits (86), Expect = 0.002
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
VV I + +A + + G E+ +V+G + + + G + + ++
Sbjct: 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPF 60
Score = 34.2 bits (78), Expect = 0.024
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 609 IKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
+ I N AAE + G E+ A++G D + + L I + S ++ +
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVR-LQLVDKIGDESTTITVAP 59
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 414 EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLL 473
+ G + +V G A + G L+ D II VN R+ ++ + + ++++ P + L
Sbjct: 359 KDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQ 415
Query: 474 ISR 476
I R
Sbjct: 416 IVR 418
Score = 35.7 bits (83), Expect = 0.046
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 597 GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
D RGA F+ +L +A+ G +K GD I ++NG+ + L +
Sbjct: 258 NLDVQRGA---FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSR 304
Score = 35.7 bits (83), Expect = 0.050
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 601 PRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISL 660
G GI I ++ AA+ G L++ D I+ +N + + + + K I+L
Sbjct: 359 KDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKV---LAAKPAIIAL 414
Query: 661 HICRR 665
I R
Sbjct: 415 QIVRG 419
Score = 32.2 bits (74), Expect = 0.57
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
G V+ ++ G + K G ++ GD I S+NG+ L
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN 296
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 38.5 bits (89), Expect = 0.003
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 410 KNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
G G+ V + + G D I+S+NG RL T
Sbjct: 8 VEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKD 58
Score = 35.8 bits (82), Expect = 0.022
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 603 GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
G G + + +N G D I++ING + L K + + I
Sbjct: 14 GTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKMLI 72
Query: 663 CRRLKSKKT 671
K+ +
Sbjct: 73 -YSSKTLEL 80
Score = 32.0 bits (72), Expect = 0.50
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G+ LG +I + + N AA G D I+ + +
Sbjct: 92 GGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLF 151
Query: 645 EAISLFKTIKNGSISLHICRR 665
I +T + + L++
Sbjct: 152 SLI---ETHEAKPLKLYVYNT 169
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 36.1 bits (84), Expect = 0.004
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
G+++ S+L N AA GRL+ GD I AI+GQ
Sbjct: 6 GVYVMSVLPNMPAA--GRLEAGDRIAAIDGQ 34
Score = 30.0 bits (68), Expect = 0.59
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
G V ++ A G LE GD I +++GQ + T Q S +
Sbjct: 6 GVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPIN--TSEQIVSYVRE 48
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 36.4 bits (84), Expect = 0.004
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 405 YIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS 464
Y+ + + + G+ V+ L E G L+ GD +++NG L ++
Sbjct: 24 YVRLSQVKRDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQ 80
Query: 465 S 465
S
Sbjct: 81 S 81
Score = 33.7 bits (77), Expect = 0.040
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 603 GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLH 661
+G + D G L++GD +A+NG D +LF+++ + +SL
Sbjct: 35 KVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLT 91
Query: 662 ICR 664
+ R
Sbjct: 92 VER 94
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 24/100 (24%)
Query: 571 SAICTFHTIVFEKGPGKKGLGFTI------------VGGKDSPRGAIGI----------- 607
SAI T + G GLGF I + + ++G+
Sbjct: 185 SAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKASHASLGVQVTNDKDTLGA 244
Query: 608 FIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
I ++ G AA G + +G + ++ + + L A
Sbjct: 245 KIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAA 283
Score = 32.6 bits (75), Expect = 0.36
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453
LG+ + K++ G + +V+GG A G + G + V+ + +
Sbjct: 231 LGVQVTNDKDTL-----GAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS 276
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 38.0 bits (89), Expect = 0.008
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
K L D GA +I ++ + AE G LKE D I++INGQ + +
Sbjct: 240 KELKDRHRDFPDVISGA---YIIEVIPDT-PAEAGGLKENDVIISINGQSVVSANDVSDV 295
Query: 648 SLFKTIKNGS-ISLHICRRLKSKK 670
IK S +++ + R +
Sbjct: 296 -----IKRESTLNMVVRRGNEDIM 314
Score = 34.6 bits (80), Expect = 0.10
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
G M+ + +EL + G + ++ AE G L+ D IIS+
Sbjct: 228 GIRMMSLTS-SKAKELKDRHRDFPDVISG----AYIIEVIPDTPAEAGG-LKENDVIISI 281
Query: 447 NGQRLRGLTMTQAKSIISSG-PLNMDLL 473
NGQ + + +I LNM +
Sbjct: 282 NGQSVV--SANDVSDVIKRESTLNMVVR 307
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 35.0 bits (81), Expect = 0.011
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHICR 664
G+++ S+ D+ AA L GD I I+G I + K G + ++
Sbjct: 8 GVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEF--IDYIHSKKVGDTVKINYKH 63
Query: 665 RLKSKKT 671
K+++
Sbjct: 64 GDKNEQA 70
Score = 31.5 bits (72), Expect = 0.20
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
G V + A L GD I ++G + + + I S
Sbjct: 8 GVYVMSVKDDVPAADV--LHAGDLITEIDGNAFK--SSQEFIDYIHS 50
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 37.5 bits (87), Expect = 0.013
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
G +T+ D+ A I ++ A E G L+ G I+ +NG E +
Sbjct: 75 GFDYTLYKVLDND-TAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESELLQ 132
Score = 35.1 bits (81), Expect = 0.065
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 403 GIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
G K +++++V G AE+ G L+ G I+ +NG + ++
Sbjct: 75 GFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESEL 130
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 34.8 bits (80), Expect = 0.013
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP-LNMDLLISR 476
V+ ++ A G L+ GD I+ V+GQ L ++ P ++ L I R
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIER 60
Score = 32.5 bits (74), Expect = 0.080
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 606 GIFIKSILDN---GQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
GI I+ +L+N AA L+ GD I+ ++GQ + L + S++L I
Sbjct: 1 GIPIEPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTF--VMLVRDNPGXSLALEI 58
Query: 663 CR 664
R
Sbjct: 59 ER 60
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 37.2 bits (87), Expect = 0.016
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
G+G I D G + + + G A + G + GD I+ ++G ++ +
Sbjct: 86 GVGLEI--TYDGGSGK-DVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSD 141
Query: 649 LFKTIKNGSISLHICRRLKSKKT 671
L + + + + + T
Sbjct: 142 LLQGEADSQVEVVLHAPGAPSNT 164
Score = 33.8 bits (78), Expect = 0.16
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
+G+ I S ++ V+ GG AEK G GD I++V+G ++G+++
Sbjct: 87 VGLEIT-YDGGSGKDV--VVLTPA-PGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSD 141
Query: 462 II 463
++
Sbjct: 142 LL 143
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 34.2 bits (79), Expect = 0.017
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
GI+ S+++N A G+++ GD+I++ +G+
Sbjct: 2 GIYASSVVENMPA--KGKIEVGDKIISADGK 30
Score = 29.5 bits (67), Expect = 0.85
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS 465
G + +V A+ G +E+GD+IIS +G+ + + + ISS
Sbjct: 2 GIYASSVVENMPAK--GKIEVGDKIISADGKNYQ--SAEKLIDYISS 44
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 36.8 bits (86), Expect = 0.020
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 597 GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
G D +G + + +G AA G ++ D I++++ +
Sbjct: 239 GIDQLQGI---VVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALET 282
Score = 32.5 bits (75), Expect = 0.42
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453
G VV + G A G +++ D IISV+ +
Sbjct: 245 GIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS 278
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 36.5 bits (85), Expect = 0.023
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 597 GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
D RGA F+ +L + +K GD I ++NG+ + L +
Sbjct: 258 NLDVQRGA---FVSEVLPGS-GSAKAGVKAGDIITSLNGKPLNSFAELRSR 304
Score = 32.2 bits (74), Expect = 0.53
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
G V+ ++ G + K G ++ GD I S+NG+ L
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN 296
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 36.1 bits (84), Expect = 0.026
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 599 DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS- 657
P G+ I ++ A L+ GD ILAI Q+ + + ++ S
Sbjct: 250 SFPDVQHGVLIHKVILGS-PAHRAGLRPGDVILAIGEQMVQNAEDVYEA-----VRTQSQ 303
Query: 658 ISLHICRRLKSKK 670
+++ I R ++
Sbjct: 304 LAVQIRRGRETLT 316
Score = 33.8 bits (78), Expect = 0.14
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
G M+ ++ EL + + G ++ ++ G A + G L GD I+++
Sbjct: 230 GVMMLTLSP-SILAELQLREPSFPDVQHG----VLIHKVILGSPAHRAG-LRPGDVILAI 283
Query: 447 NGQRLRGLTMTQAKSIISSG-PLNMDLL 473
Q ++ + + L + +
Sbjct: 284 GEQMVQ--NAEDVYEAVRTQSQLAVQIR 309
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 35.5 bits (81), Expect = 0.068
Identities = 13/126 (10%), Positives = 29/126 (23%), Gaps = 10/126 (7%)
Query: 554 ETILTSTNFCTLPRRPRSAICTFHTIV----FEKGPGKKGLGFTIVGGKDSPRGAIGIFI 609
T + + + T H+ F + D +
Sbjct: 697 PLCKTRYDLSNVIVEMQGEYRTSHSYEMGGTFTDKDPFRSGRIACDFKLDGDHYVVAKAY 756
Query: 610 K----SILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
+ + E G G I I+G+ + + S + + +
Sbjct: 757 AGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGK 814
Query: 666 LKSKKT 671
K+
Sbjct: 815 GGDKRD 820
Score = 29.4 bits (65), Expect = 4.7
Identities = 12/106 (11%), Positives = 32/106 (30%), Gaps = 16/106 (15%)
Query: 358 IPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI 417
+P + D +++ + + F ++ +I + +
Sbjct: 696 VPLCKTRYDLSNVI--------VEMQGEYRTSHSYEMGGTFTDKDPFRSGRIACDFKLDG 747
Query: 418 GGFVVAHIVSGGL--------AEKEGCLELGDEIISVNGQRLRGLT 455
+VVA +G + G G I ++G+ + +
Sbjct: 748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS 793
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 33.6 bits (78), Expect = 0.22
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 539 RKAIISTGS------ISGDEEETILTSTNFCTLPRRPRS 571
+ +++TG+ I G +E TST P
Sbjct: 140 DRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPER 178
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 33.4 bits (77), Expect = 0.23
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEG----------CLELGDEIISVNGQRL 451
LGI A ++ + + G +V G A K G L LGD I SVNG ++
Sbjct: 235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKV 294
Query: 452 R 452
Sbjct: 295 S 295
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Chromobacterium violaceum}
Length = 407
Score = 32.8 bits (73), Expect = 0.39
Identities = 43/328 (13%), Positives = 98/328 (29%), Gaps = 21/328 (6%)
Query: 243 TSCNDSFSSLQTCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKF--RNS 300
S S+ QT ++PQ P L + +K D + R S + ++ + + S
Sbjct: 26 QSDAPDASAGQTRAAPQGSAAPALAAARAKADELGQAAREVRASVERQTAYETRLAAQRS 85
Query: 301 PSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPA 360
+ G+ P + ++ G + + S+ + E V + S Q
Sbjct: 86 AAAFSGGEPPQARREAPGAELDEARNAQTVSARLFEGNLKGVAQSGHAMSAEQKQALQSG 145
Query: 361 YQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGF 420
+ S + + + D + + I KIK++ G
Sbjct: 146 LDDVFADAPPQARSAGAPMLYSANAAAGQG--MADSDLWDMISDQIGKIKDNYLGVYENV 203
Query: 421 VVAHI-----VSGGLAEKEGCLELGDE--IISVNGQRLR-GLTMTQAKSIISSGPLNMDL 472
V + S L++ ++ G + + +N L+ L + + N
Sbjct: 204 VGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLNVDALKAALEKLKKDFSLGDNLDNKKA 263
Query: 473 LISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHS 532
++ K + + + R + ++ QK
Sbjct: 264 VLFPAQSK---------DGGIQGGSESDARKWAKEMGLPDAPPPGFSCVQKAADGNWVVV 314
Query: 533 INNKLLRKAIISTGSISGDEEETILTST 560
++ + I G++ E + +
Sbjct: 315 VDMTPIDTMIRDVGALGSGTELELDNAK 342
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 31.0 bits (71), Expect = 0.42
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
G+ ++S+ N A L++ D I ++ + T L++
Sbjct: 58 GVIVRSVQSNM-PANGH-LEKYDVITKVDDKEIASSTDLQSA 97
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 30.3 bits (69), Expect = 1.7
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 25/84 (29%)
Query: 563 CTLPRRPRSAICTFHTIV--------FEKGPGKKGLGFTIVGGKDSPRGAIG---IFIKS 611
C P R + IC +V E+ +GL ++ G SP +G + IK
Sbjct: 72 CADPSRDQRTIC----VVEEPGDVIALERSGEYRGLYH-VLHGVLSPMNGVGPDKLHIKP 126
Query: 612 ILDNGQAAEDGRLKEGDE-ILAIN 634
+L R+ +G E ILA
Sbjct: 127 LLP--------RVGQGMEVILATG 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,118,335
Number of extensions: 518830
Number of successful extensions: 1340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1136
Number of HSP's successfully gapped: 403
Length of query: 671
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 571
Effective length of database: 3,909,693
Effective search space: 2232434703
Effective search space used: 2232434703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)